BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00027556
         (2847 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   379   e-171
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   389   e-150
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   380   e-150
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   343   e-146
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   370   e-142
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   369   e-141
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           367   e-140
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   369   e-140
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   320   e-122
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   397   e-118
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   303   e-117
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        379   e-117
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              305   e-117
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  302   e-117
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              302   e-116
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              304   e-116
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    311   e-115
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              302   e-115
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        385   e-113
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   376   e-113

>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  379 bits (972), Expect(3) = e-171
 Identities = 183/312 (58%), Positives = 231/312 (74%)
 Frame = -3

Query: 1075 LDSGCSFHMTPNKDWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRH 896
            L  G  F    +K   +T+K  DGG VLLGNNK C ++G GTVR+K +DG ER+L +VR+
Sbjct: 263  LIQGALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRY 322

Query: 895  IPKLKRNLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAI 716
            IP+LKRNLISLGMLD  GYT+K     L+V +GS+ VMKG   NGLYTL   TV G  + 
Sbjct: 323  IPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVST 382

Query: 715  VTHAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNS 536
            V    +  ++LWH++LGH+S RGLQEL+KQG+L   K+  L FCE+CVFGKATRVKF  +
Sbjct: 383  VLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKA 442

Query: 535  TYTTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWK 356
             + T+  L Y+H DLWGPSR  ++GG RYF+++IDD S+KVW+Y  K K E F KFK WK
Sbjct: 443  IHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWK 502

Query: 355  KMVEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLL 176
             +VE QT +KVKKLRTDNGLEFL+ +F+ LC KEG+ RH+TV+ TPQQNGLAERMNRT+L
Sbjct: 503  ILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTIL 562

Query: 175  ERVRCMLFSANM 140
            ERVRCML S+ +
Sbjct: 563  ERVRCMLSSSGL 574



 Score =  218 bits (556), Expect(3) = e-171
 Identities = 109/236 (46%), Positives = 157/236 (66%), Gaps = 5/236 (2%)
 Frame = -2

Query: 1889 TSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKK-----KAYNT 1725
            T+K ++EKF G NDF L ++KM ALL   GL +AL GE  +P+T  +++K     KA++ 
Sbjct: 3    TAKFDVEKFTGKNDFGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAHSA 62

Query: 1724 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 1545
            +ILSL D +LRE  K K++AEVWLKLESLYMTK+L+N L+ K K +TFKM  G  ++ H+
Sbjct: 63   IILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEXHL 122

Query: 1544 DEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSK 1365
            D FNK+ LDLENI +   DEDKA++LL SL  SY    D + +GR+++T D+V   L ++
Sbjct: 123  DHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILHAR 182

Query: 1364 ELQRKNELKEQTGEGLVVQGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGHIRR 1197
            ELQ++ E KE++GEGL ++GRS++RE                   + CH+EGH ++
Sbjct: 183  ELQKQEESKEESGEGLNIRGRSEKREKKGKNSKSRSKSKTKKFKCFICHKEGHFKK 238



 Score = 55.8 bits (133), Expect(3) = e-171
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EA  TA +LIN+ PS A+ FKTP+E WTG    Y +L++ GC
Sbjct: 579 WAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGC 622



 Score = 77.0 bits (188), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 47/61 (77%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            KN  +HER+KHID++ +F+RDI+A G++ + K+H  +NP +MLTK +  +KF  CLN+IN
Sbjct: 1145 KNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLIN 1204

Query: 2666 V 2664
            +
Sbjct: 1205 M 1205


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  389 bits (1000), Expect(3) = e-150
 Identities = 193/351 (54%), Positives = 248/351 (70%), Gaps = 6/351 (1%)
 Frame = -3

Query: 1171 KEVEQVNAIVEDDYESADVLV--VATDKCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 998
            KE E   A+V D+   A++LV  V   +   QWILD+ C++HM PN+DWF TY+ + GG 
Sbjct: 234  KEEEGKAAVVTDEKSDAELLVAYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQGGT 293

Query: 997  VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 818
            VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LIS   LD  GY Y GGDG
Sbjct: 294  VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDG 353

Query: 817  VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 650
            +LKV KGS+VVMK  ++S  LY L+ +T++G  A V+ + LS S    LWH +LGH+SE 
Sbjct: 354  ILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHMSEI 412

Query: 649  GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 470
            GL EL K+GLLYG  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+R  
Sbjct: 413  GLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 472

Query: 469  TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 290
            + GG RY ++I+DD S+KVW Y  K K +AF  FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 473  SFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEF 532

Query: 289  LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 137
             +  F   C  EG+VRH T+  TPQQNG+AERMNRT++ + RCML +A +P
Sbjct: 533  CSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNRTIISKARCMLSNAGLP 583



 Score =  135 bits (339), Expect(3) = e-150
 Identities = 80/205 (39%), Positives = 124/205 (60%), Gaps = 7/205 (3%)
 Frame = -2

Query: 1883 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKKKAYNTLI---L 1716
            K ++   +    FSLW++KM A+L    LD+AL G  K    +  DEKKK +  +    L
Sbjct: 5    KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSVDEKKKDHKVMSYIHL 64

Query: 1715 SLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEF 1536
             LS+ IL+EV K +T+  +WLKL+ + MTK L++ ++LK K F  K+ D + + +H+  F
Sbjct: 65   HLSNNILQEVLKEETAVGLWLKLKQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSAF 124

Query: 1535 NKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQ 1356
             ++  DLE+++V++D+ED  L+LL SLP SY  F D + + R+T+TL +V  AL +KE  
Sbjct: 125  KEIVADLESMEVKHDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKM 184

Query: 1355 RK---NELKEQTGEGLVVQGRSDRR 1290
            +K   +E      E LVV G  +RR
Sbjct: 185  KKMVPSEGSNSQAESLVV-GVGNRR 208



 Score = 61.2 bits (147), Expect(3) = e-150
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV+TA YLIN+ PS AI  KTP E+W+G P +Y +LR+ GC
Sbjct: 587 WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPVNYSDLRVFGC 630


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  380 bits (977), Expect(3) = e-150
 Identities = 184/356 (51%), Positives = 250/356 (70%), Gaps = 7/356 (1%)
 Frame = -3

Query: 1186 KNEKDKEVEQVNAIV--EDDYESADVLVVATDKCDKQ--WILDSGCSFHMTPNKDWFETY 1019
            K +K  E + V+A V  ED     D+ +VA +       W+LDSG S+H+ P ++WF TY
Sbjct: 240  KKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTY 299

Query: 1018 KRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGY 839
            +++DGG + + N+  C V+G G+++++THDG+   L EVRH+P + +NLISL +LD  G+
Sbjct: 300  EQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGF 359

Query: 838  TYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVT---HAKLSKSQLWHRKL 668
            ++ G DGVL+V+KGS +++KGV    LY LQ STV G A + +   H K   ++LWH +L
Sbjct: 360  SWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK-DMTKLWHIRL 418

Query: 667  GHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLW 488
            GH+ ERG+Q L K+ LL G KV  LEFCE+CVFGK  R KF  + + T+ TL Y+H D W
Sbjct: 419  GHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCW 478

Query: 487  GPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRT 308
            GP R E+LGG R+F+SIIDD S+  WVY+ K K EAF KFK WK ++E QTGKK+K+LRT
Sbjct: 479  GPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRT 538

Query: 307  DNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 140
            DNGLEF   EFD+ C  EG+ RH+TV+ TPQQNG+AERMN+TLLER RCML +A +
Sbjct: 539  DNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGL 594



 Score =  149 bits (377), Expect(3) = e-150
 Identities = 88/228 (38%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
 Frame = -2

Query: 1877 EIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DE--KKKAYNTLILSLSD 1704
            +I+KF G N FSLW++KM ALL   G    L  +     T      ++KA++T++L L+D
Sbjct: 7    KIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTIMLCLAD 66

Query: 1703 KILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLY 1524
             ++ EV+  +T+A +WLKLESLYMTK+L+N L LK + F  +M +G  L+ H+++ N L 
Sbjct: 67   DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126

Query: 1523 LDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQRK-- 1350
            L+L NI V+ +DED AL+LL SLP S+E FV     G++T++L++V  AL S+EL+ K  
Sbjct: 127  LELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHKAN 186

Query: 1349 NELKEQTGEGLVVQGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGH 1206
                +    GL    R  R+                   +Y C E+GH
Sbjct: 187  GTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNY-CKEKGH 233



 Score = 52.8 bits (125), Expect(3) = e-150
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV+TA YLIN+ P   I  KTP E+W+G    Y NL+  GC
Sbjct: 599 WAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGC 642



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 48/63 (76%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            K+ ++HERTKHID++++F+R   +E ++ +KK+   +NP +M TKPV  SKF  CL+++N
Sbjct: 1247 KDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLN 1303

Query: 2666 VRA 2658
            +R+
Sbjct: 1304 IRS 1306


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  343 bits (879), Expect(3) = e-146
 Identities = 180/352 (51%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1192 KRKNEKDKEVEQVNA-IVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYK 1016
            KR+N   K V + +A ++ D Y+SA VL VA     K+WILDSGCSFHM P K WFE +K
Sbjct: 287  KRQNTIKKTVNEGDAAVILDGYDSAKVLNVAEMDSGKEWILDSGCSFHMCPIKAWFEDFK 346

Query: 1015 RIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYT 836
              +GG VLLGNNK C ++G   VR+K +DG ER+L  VR+IP+LKRNLISLGMLD  GYT
Sbjct: 347  EANGGHVLLGNNKHCKILGTSIVRIKHYDGIERVLEVVRYIPELKRNLISLGMLDKLGYT 406

Query: 835  YKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVS 656
            +K     L+V +GS+ VMKG   NGLYTL   T+ G  +IV    +  ++LWH++LGH++
Sbjct: 407  FKSKPNSLRVARGSLTVMKGTIKNGLYTLIGQTMTGKVSIVLKEDMGITKLWHQRLGHIN 466

Query: 655  ERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSR 476
             + LQE QKQG+L   K+  L FCE+CVF KATRVKF  + + T+  L Y+H +LWGPS 
Sbjct: 467  HKRLQEPQKQGVLGNYKLTDLPFCEHCVFSKATRVKFAKAVHETQNQLDYIHSNLWGPSW 526

Query: 475  HETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGL 296
              +LGG R  I                              +VE Q G+KVKKLRTDN L
Sbjct: 527  VPSLGGARVEI------------------------------LVETQVGRKVKKLRTDNEL 556

Query: 295  EFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 140
            EFL+ +F+  C KEG+  H+TV+ TPQQNGLAERMNRT+LERVRCML S  +
Sbjct: 557  EFLSNDFNSFCQKEGIATHRTVRYTPQQNGLAERMNRTILERVRCMLSSLGL 608



 Score =  175 bits (443), Expect(3) = e-146
 Identities = 89/207 (42%), Positives = 131/207 (63%), Gaps = 5/207 (2%)
 Frame = -2

Query: 1802 GLDEALQGEAKMPTTY*DEKK-----KAYNTLILSLSDKILREVTKMKTSAEVWLKLESL 1638
            GL +AL GE  +  T  +++K     KA + +ILSL D +LREV K K +AE+WLKLESL
Sbjct: 76   GLQDALLGEKNLLNTMQEKEKTKLLEKAQSAIILSLGDTMLREVAKAKPTAELWLKLESL 135

Query: 1637 YMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHS 1458
            YMTK+L+N L+ K K +TFK+  G  ++ H D FNK+ LDLENI +   +EDKA++LL S
Sbjct: 136  YMTKSLANRLHKKIKLYTFKITPGMSIEEHFDHFNKIILDLENIDITVSNEDKAILLLTS 195

Query: 1457 LPKSYETFVDILKHGRETITLDDVVGALSSKELQRKNELKEQTGEGLVVQGRSDRREFXX 1278
            L  SY    + + +GR+++T D+V   L  +ELQ++ E K+++GEGL ++GR D+RE   
Sbjct: 196  LDASYTNMKEAIMYGRDSMTFDEVQSILHPRELQKQEESKDESGEGLNIRGRYDKREKKC 255

Query: 1277 XXXXXXXXXXXXXXXSYFCHEEGHIRR 1197
                            + CH+EGH ++
Sbjct: 256  KNLKAKSKSNTKKFKCFICHKEGHFKK 282



 Score = 52.0 bits (123), Expect(3) = e-146
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV T  +LI++ PS A+ FKTP+E WTG    Y +L++ GC
Sbjct: 613 WVEAVETVVHLISRSPSSALQFKTPQEKWTGKVVDYQHLKVFGC 656


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  370 bits (950), Expect(3) = e-142
 Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -3

Query: 1228 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 1055
            I   KKV  +  +RKN+KD +V   +A   DD +S D LVV         +WILDS CSF
Sbjct: 242  IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298

Query: 1054 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 878
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 299  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358

Query: 877  NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 710
            NLISL  LD  GY Y G DGVLKV KGS+V +KG V S  LY L+  T+ G    AA +T
Sbjct: 359  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAIT 418

Query: 709  HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 530
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 419  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478

Query: 529  TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 350
            TT+ TL YVH DLWGPS+  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 479  TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 349  VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 170
            +E QT +KVK LRTDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 539  IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598

Query: 169  VRCMLFSANM 140
             RCML  A M
Sbjct: 599  ARCMLSHARM 608



 Score =  127 bits (318), Expect(3) = e-142
 Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
 Frame = -2

Query: 1883 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 1719
            K ++   N    FSLW++KM  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 2    KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61

Query: 1718 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 1539
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 1538 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 1362
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 1361 ---LQRKNELKEQTGEGLVVQGRSDRR 1290
               + + +      GE L V+GR++ R
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENR 208



 Score = 58.9 bits (141), Expect(3) = e-142
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = -2

Query: 161 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           HA   +  W EA +TA YLIN+ PS+ +  KTP E+W+G P  Y  L++ GC
Sbjct: 605 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGC 656


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  369 bits (948), Expect(3) = e-141
 Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -3

Query: 1228 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 1055
            I   KKV  +  +RKN+KD +V   +A   DD +S D LVV         +WILDS CSF
Sbjct: 242  IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298

Query: 1054 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 878
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 299  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358

Query: 877  NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 710
            NLISL  LD  GY Y G DGVLKV KGS+V +KG + S  LY L+  T+ G    AA VT
Sbjct: 359  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVT 418

Query: 709  HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 530
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 419  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478

Query: 529  TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 350
            TT+ TL YVH DLWGPS+  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 479  TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 349  VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 170
            +E QT +KVK LRTDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 539  IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598

Query: 169  VRCMLFSANM 140
             RCML  A M
Sbjct: 599  ARCMLSHARM 608



 Score =  127 bits (318), Expect(3) = e-141
 Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
 Frame = -2

Query: 1883 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 1719
            K ++   N    FSLW++KM  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 2    KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61

Query: 1718 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 1539
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 1538 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 1362
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 1361 ---LQRKNELKEQTGEGLVVQGRSDRR 1290
               + + +      GE L V+GR++ R
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENR 208



 Score = 58.9 bits (141), Expect(3) = e-141
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = -2

Query: 161 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           HA   +  W EA +TA YLIN+ PS+ +  KTP E+W+G P  Y  L++ GC
Sbjct: 605 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGC 656



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 30/61 (49%), Positives = 48/61 (78%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            K+ M+HERTKHIDIK++F+RD++ EGK+ + KI   +NP +M+TKP+  +KF LC +++ 
Sbjct: 1271 KDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVG 1330

Query: 2666 V 2664
            +
Sbjct: 1331 L 1331


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  367 bits (942), Expect(3) = e-140
 Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -3

Query: 1228 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 1055
            I   KKV  +  +RKN+KD +V   +A V DD +S D LVV         +WILDS CSF
Sbjct: 244  IDECKKV--QAKERKNKKDGKVSVASAAVSDD-DSGDCLVVFAGCVAGHDEWILDSACSF 300

Query: 1054 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 878
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 301  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 360

Query: 877  NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 710
            NLISL  LD  GY Y G DGVLKV KGS+V +KG + S  LY L+  T+ G    AA VT
Sbjct: 361  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVT 420

Query: 709  HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 530
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 421  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVH 480

Query: 529  TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 350
            TT+ TL YVH DLWGPS+  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 481  TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 540

Query: 349  VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 170
            +E QT +KVK L TDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 541  IERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 600

Query: 169  VRCMLFSANM 140
             RCML  A M
Sbjct: 601  ARCMLSHARM 610



 Score =  125 bits (313), Expect(3) = e-140
 Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
 Frame = -2

Query: 1883 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 1719
            K ++   N    FSLW++ M  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 4    KFDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 63

Query: 1718 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 1539
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  HI E
Sbjct: 64   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAE 123

Query: 1538 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 1362
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 124  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 183

Query: 1361 ---LQRKNELKEQTGEGLVVQGRSDRR 1290
               + + +      GE L V+GR++ +
Sbjct: 184  MKIMVQNDGSSSSKGEALHVRGRTENK 210



 Score = 58.9 bits (141), Expect(3) = e-140
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = -2

Query: 161 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           HA   +  W EA +TA YLIN+ PS+ +  KTP E+W+G P  Y  L++ GC
Sbjct: 607 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGC 658



 Score = 76.6 bits (187), Expect = 6e-11
 Identities = 30/61 (49%), Positives = 48/61 (78%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            K+ M+HERTKHIDIK++F+RD++ EGK+ + KI   +NP +M+TKP+  +KF LC +++ 
Sbjct: 1273 KDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLVG 1332

Query: 2666 V 2664
            +
Sbjct: 1333 L 1333


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  369 bits (947), Expect(3) = e-140
 Identities = 190/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -3

Query: 1228 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 1055
            I   KKV  +  +RKN+KD +V   +A   DD +S D LVV         +WILDS CSF
Sbjct: 242  IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298

Query: 1054 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 878
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 299  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358

Query: 877  NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 710
            NLISL  LD  GY Y G DGVLKV KGS+V +KG + S  LY L+  T+ G    AA VT
Sbjct: 359  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVT 418

Query: 709  HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 530
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 419  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478

Query: 529  TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 350
            TT+ TL YVH DLWGPS+  +LGG RY +++IDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 479  TTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 349  VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 170
            +E QT +KVK LRTDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 539  IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598

Query: 169  VRCMLFSANM 140
             RCML  A M
Sbjct: 599  ARCMLSHARM 608



 Score =  120 bits (302), Expect(3) = e-140
 Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
 Frame = -2

Query: 1883 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 1719
            K ++   N    FSL ++KM  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 2    KFDLPLLNYDTRFSLRQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61

Query: 1718 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 1539
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  H+ E
Sbjct: 62   LHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 1538 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 1362
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 1361 ---LQRKNELKEQTGEGLVVQGRSDRR 1290
               + + +      GE L V+GR++ R
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENR 208



 Score = 59.7 bits (143), Expect(3) = e-140
 Identities = 24/52 (46%), Positives = 34/52 (65%)
 Frame = -2

Query: 161 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           HA   +  W EA +TA YLIN+ PS+ +  KTP E+W+G+P  Y  L++ GC
Sbjct: 605 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGC 656



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 30/61 (49%), Positives = 48/61 (78%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            K+ M+HERTKHIDIK++F+RD++ EGK+ + KI   +NP +M+TKP+  +KF LC +++ 
Sbjct: 1271 KDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVG 1330

Query: 2666 V 2664
            +
Sbjct: 1331 L 1331


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  320 bits (821), Expect(3) = e-122
 Identities = 157/346 (45%), Positives = 225/346 (65%), Gaps = 1/346 (0%)
 Frame = -3

Query: 1189 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 1010
            RK + + E +    ++ +    ++ L V        WILDSGC+ HMT  +DWF +++  
Sbjct: 272  RKKKMESEGQGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHMTSRRDWFISFQEK 331

Query: 1009 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 830
                +LLG++      G GT+R+ TH GT ++L  V+++P L+RNLIS G LD  GY ++
Sbjct: 332  GNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHE 391

Query: 829  GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 650
            GG+G ++ FK +   ++G  SNGLY L  STV+         K+ K+ LWH +LGH+S  
Sbjct: 392  GGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVMSELCNAETDKV-KTALWHSRLGHMSMN 450

Query: 649  GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWG-PSRH 473
             L+ L  +GL+   ++++LEFCE+CV GK+ +V FN   +T+ + LSYVH DLWG P+  
Sbjct: 451  NLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVT 510

Query: 472  ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 293
             ++ G +YF+SIIDD ++KVW+Y  K+KDE F KF  WK +VE Q  KKVK LRTDNGLE
Sbjct: 511  PSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLE 570

Query: 292  FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 155
            F N  FD  C + G+ RH+T   TPQQNG+AERMNRT++E+VRC+L
Sbjct: 571  FCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLL 616



 Score =  119 bits (299), Expect(3) = e-122
 Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 32/267 (11%)
 Frame = -2

Query: 1901 MAATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEAL------------QGEAKMPT- 1761
            MA TT++ EI+ FNG  DFSLWK+++ A LG LGL + L            + EAK  + 
Sbjct: 1    MATTTTRVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESG 60

Query: 1760 -------------TY*DEKKKAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTL 1620
                            ++ ++A N +I  +SD +L +V    T+A++W  L   YM  +L
Sbjct: 61   DGESSGTKEVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSL 120

Query: 1619 SNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYE 1440
             N +Y + K ++FKM     +  ++DEF ++  +L +++++ D+E +A+++L+SLP S+ 
Sbjct: 121  PNRIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHI 180

Query: 1439 TFVDILKHGRETITLDDVVGALSSKELQRKNELKEQTGEGLVV----QGRS--DRREFXX 1278
                 LK+G +T+T+ DV  +  S E +    +    G+  V+    +GR      +   
Sbjct: 181  QLKHTLKYGNKTLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGG 240

Query: 1277 XXXXXXXXXXXXXXXSYFCHEEGHIRR 1197
                            ++C +EGH+++
Sbjct: 241  QGKGRSRSNSKTKVPCWYCKKEGHVKK 267



 Score = 49.3 bits (116), Expect(3) = e-122
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCV 3
           W EA  TAAYLIN+ P+ AI    PEE+W    P Y +LR  G +
Sbjct: 626 WAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSI 670



 Score = 67.8 bits (164), Expect = 3e-08
 Identities = 29/61 (47%), Positives = 41/61 (67%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            KN +YHERTKHID++F +IRD+V  G V + KIH   NP + LTK +  +KF   L ++ 
Sbjct: 1292 KNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLK 1351

Query: 2666 V 2664
            +
Sbjct: 1352 L 1352


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  397 bits (1019), Expect(2) = e-118
 Identities = 194/351 (55%), Positives = 247/351 (70%), Gaps = 4/351 (1%)
 Frame = -3

Query: 1177 KDKEVEQVNAIVEDDYESADVLVVATDKC---DKQWILDSGCSFHMTPNKDWFETYKRID 1007
            K K+ EQ  A V  D +    L+VA   C     +W+LD+GC++HM PN+DWF TY+ + 
Sbjct: 207  KGKQEEQGKAAVATDNKPDAELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQ 266

Query: 1006 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 827
            GG VL+G+N PC V G+GT+++K  DG  R L++VRHIP LKRNLISL  LD  GY Y G
Sbjct: 267  GGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSG 326

Query: 826  GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 650
            GDG+LKV KGS+VVMK  +++  LY LQ +T++G  A VT + LS S LWH +LGH+SE 
Sbjct: 327  GDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVAAVTDS-LSNSDLWHMRLGHMSEI 385

Query: 649  GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 470
            GL EL K+GLL G  + KL+FCE+C+FGK  RVKF  ST+TT   L YVH DLWGP+R  
Sbjct: 386  GLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKR 445

Query: 469  TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 290
            + GG RY ++I+DD S+KVW Y  K K EAF  FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 446  SFGGARYMMTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEF 505

Query: 289  LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 137
             + +F   C  EG+VRH TV  TPQQNG+ ERMNRT++ + RCML +A +P
Sbjct: 506  CSRQFKSYCRSEGIVRHYTVSHTPQQNGVVERMNRTIISKARCMLSNAGLP 556



 Score = 58.2 bits (139), Expect(2) = e-118
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EA +TA YLIN+ PS AI  KTP E+W+G P +Y +L++ GC
Sbjct: 560 WAEAASTACYLINRSPSYAIDKKTPIEMWSGSPANYSDLKVFGC 603



 Score =  120 bits (300), Expect = 5e-24
 Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 3/146 (2%)
 Frame = -2

Query: 1718 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 1539
            L LS+ IL+EV K KT+  +WLKLE + MTK L++ ++LK K F  K+ D + + +H+  
Sbjct: 6    LHLSNNILQEVLKEKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLST 65

Query: 1538 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKEL 1359
            F ++  DLE+++++YD+ED  L+LL SLP SY  F D + + R+T+TL +V  AL +KE 
Sbjct: 66   FKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAKEK 125

Query: 1358 QRK---NELKEQTGEGLVVQGRSDRR 1290
             +K   +E      E LVV+GR   +
Sbjct: 126  MKKMVPSEGSNSQPESLVVRGRQQEK 151


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score =  303 bits (777), Expect(3) = e-117
 Identities = 149/344 (43%), Positives = 216/344 (62%)
 Frame = -3

Query: 1186 KNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRID 1007
            K + + E +    ++ +    ++ L +   +   +W++DSGC++HMT   DWF  +   +
Sbjct: 274  KRKLENEGQGKAGVITEKLVYSEALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENE 333

Query: 1006 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 827
               +LLG++      G GTV++ TH G+ R+L  VR +P L+RNLIS G LD  GY ++G
Sbjct: 334  TTMILLGDDHTVESKGSGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEG 393

Query: 826  GDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSERG 647
            GDG ++ +K +   + G   NGLY L   TV+     V  +   K++LWH +LGH+S   
Sbjct: 394  GDGKVRFYKENKTALCGNLVNGLYVLDGHTVVNENCNVEGSN-EKTELWHCRLGHMSLNN 452

Query: 646  LQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHET 467
            ++ L ++GLL    + +L FCENCV GK+ ++ FN   + T E L Y+H DLWG      
Sbjct: 453  MKILAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWGK----- 507

Query: 466  LGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEFL 287
                +YF+SIIDD S+KVW+   KTKDE F +F  WK++VE Q  KKVK LRTDNGLEF 
Sbjct: 508  ----QYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFC 563

Query: 286  NMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 155
            N++FDE C + G+ RH+T   TPQQNG+A+RMNRTL+E+VRC+L
Sbjct: 564  NLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVRCLL 607



 Score =  119 bits (297), Expect(3) = e-117
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 36/269 (13%)
 Frame = -2

Query: 1895 ATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQG---------------EAKMPT 1761
            A ++K EI+ FNG  DFSLWK+++ A LG LGL  AL                 E++   
Sbjct: 2    AMSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESED 61

Query: 1760 TY*DEKK--------------KAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKT 1623
               D KK              +A N +I  ++D +L +V    T+AE+W  L  L+M  +
Sbjct: 62   DETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETS 121

Query: 1622 LSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSY 1443
            L N +Y + + ++FKM D   +  + DEF ++  +L ++Q++  +E +A+++L+SLP SY
Sbjct: 122  LPNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSY 181

Query: 1442 ETFVDILKHGRETITLDDVVGALSSKELQRK-NELKE------QTGEGLVVQGRSDRREF 1284
                  LK+G +T+++ DVV   S+K L+R+ +E KE       T      +GR   +  
Sbjct: 182  IQLKHTLKYGNKTLSVQDVVS--SAKSLERELSEQKETIRAPASTALYTAERGRPQTKNT 239

Query: 1283 XXXXXXXXXXXXXXXXXSYFCHEEGHIRR 1197
                              +FC +EGH+++
Sbjct: 240  QGQGKGRGRSNSKSRLTCWFCKKEGHVKK 268



 Score = 52.0 bits (123), Expect(3) = e-117
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCV 3
           W EA  TAAYL+N+ P+ A+    PEE+W    P Y +LR  GC+
Sbjct: 617 WAEAAATAAYLVNRSPASAVDHNVPEELWLDKKPGYKHLRRFGCI 661



 Score = 72.4 bits (176), Expect = 1e-09
 Identities = 29/62 (46%), Positives = 46/62 (74%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            KN+ +H+RTKH+++KFYFIRDI+  G+V ++KIH   NP +MLTK +   KF   L+++ 
Sbjct: 1246 KNNAFHDRTKHVEVKFYFIRDIIEAGEVKVRKIHTSVNPADMLTKCIPVKKFEEALDVLK 1305

Query: 2666 VR 2661
            ++
Sbjct: 1306 LQ 1307


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  379 bits (974), Expect(2) = e-117
 Identities = 186/362 (51%), Positives = 252/362 (69%), Gaps = 5/362 (1%)
 Frame = -3

Query: 1207 ILEGLKRKNEKDKEVEQVNAIVEDD----YESADVLVVATDKCDKQWILDSGCSFHMTPN 1040
            I +  ++K ++ +E     A+  DD    Y+SAD+LV +      QW++DSGCSFH+ P 
Sbjct: 246  IRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQWVIDSGCSFHLCPE 305

Query: 1039 KDWFETYKRIDGGKVLLGNNKPCSVIGIGTV-RLKTHDGTERLLTEVRHIPKLKRNLISL 863
            K  F  Y+ +DGG+VL+GNN  C+++GI    R +      R L EVRH P+LKRNLISL
Sbjct: 306  KTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISL 365

Query: 862  GMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQL 683
            GMLD  GY +K   G L+V KG+ +VMKGV  NGLY LQ S+V     +   ++  +++L
Sbjct: 366  GMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKL 425

Query: 682  WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 503
            WH +LGH+S +GLQEL KQGLL GD++ +LEFCENC+FGK+ R KFN   + +++ L Y 
Sbjct: 426  WHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYA 485

Query: 502  HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 323
            H D WGP++  +L GGRYF+S+IDD S+KVW+YI K KD+A  KFK WK +VE Q+  K+
Sbjct: 486  HIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKL 545

Query: 322  KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 143
            K LRTDNGLEF +  F+E C K G+ RHKTV+ TPQQNGLAERMNRTL+++ RCML ++ 
Sbjct: 546  KCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSK 605

Query: 142  MP 137
            +P
Sbjct: 606  LP 607



 Score = 73.2 bits (178), Expect(2) = e-117
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAVNTA+YL+N+ PS AIGFKTPEE+W G P +Y NLR+ GC
Sbjct: 611 WAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGC 654



 Score =  181 bits (460), Expect = 1e-42
 Identities = 100/200 (50%), Positives = 140/200 (70%), Gaps = 8/200 (4%)
 Frame = -2

Query: 1883 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*--DEKKK-----AYNT 1725
            + EIEKF    DFSLWK+KM ALL + GL+ AL  E    +T    D+K++     A++T
Sbjct: 5    RHEIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHST 64

Query: 1724 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 1545
            LILSL D ILRE+++ KT+  +W K+E+L M K+L++ L+LK + +TF M +G  +Q+HI
Sbjct: 65   LILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHI 124

Query: 1544 DEFNKLYLDLENIQ-VEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSS 1368
            D FNK+ LDLE ++ V+  DEDKA  LL SLPKSYE FVD + +GR T+TL+DV  +LSS
Sbjct: 125  DTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSS 184

Query: 1367 KELQRKNELKEQTGEGLVVQ 1308
            KE+Q+  EL+   GEGL+ +
Sbjct: 185  KEIQKNCELETSNGEGLMAR 204



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            KN MYHERTKHID+K  FIRD V +G V + KIH   NP + LTK + ++KF  C+N++ 
Sbjct: 1269 KNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVNLMG 1328

Query: 2666 V 2664
            +
Sbjct: 1329 I 1329


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  305 bits (780), Expect(3) = e-117
 Identities = 161/361 (44%), Positives = 229/361 (63%), Gaps = 9/361 (2%)
 Frame = -3

Query: 1195 LKRKNEKDKEVEQVNAIVEDDYESADVL---VVATDKCDKQ----WILDSGCSFHMTPNK 1037
            +K+  EK+ E       V    +  ++L      + K +++    WI+DSG ++HMTP++
Sbjct: 246  IKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHR 305

Query: 1036 DWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGM 857
            DWF +Y+ I  G V +GN+    + G+GT+RLK HDGT R +  VRH+  LK+NL+S+G 
Sbjct: 306  DWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQ 365

Query: 856  LDHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQASTVIGIAAIVTHAKLSKS-QL 683
            LD  G       G+LKV KG++VVMK  + ++ LY L   T+    A V  A   ++  +
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMM 425

Query: 682  WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 503
            WH++LGH+SERGL+ L ++ LL+G K   L FCE+CV  K  R+KF   T  ++  L  +
Sbjct: 426  WHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLI 485

Query: 502  HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 323
            H D+W  S   +LGG RYF+S IDD S+++WVY  K K + F  FKA+K  +E++TGKK+
Sbjct: 486  HSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKI 544

Query: 322  KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 143
            K LRTDNG E+++ EF   C +EG+VR  TV  TPQQNG+AERMNRTLLER R ML +A 
Sbjct: 545  KCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 142  M 140
            M
Sbjct: 605  M 605



 Score =  111 bits (278), Expect(3) = e-117
 Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 12/211 (5%)
 Frame = -2

Query: 1886 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKKK-----AYNTL 1722
            +K EIEKFNG N FSLWK+K+ A+L      +A+ G    P    DEK K     A   L
Sbjct: 3    AKFEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGR---PADITDEKWKEMDDNAVANL 58

Query: 1721 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 1542
             L+++D +L  + + KT+ E+W  L  LY  K+L N ++LK + +T +M +   + +HI+
Sbjct: 59   HLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHIN 118

Query: 1541 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGR--ETITLDDVVGALSS 1368
              N L+  L     +  + ++A +LL SLP SY+  +  + +    +T+  DDV GA+  
Sbjct: 119  TLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILE 178

Query: 1367 KELQRKN-----ELKEQTGEGLVVQGRSDRR 1290
            +E +RKN     E  +Q     + +GRS  R
Sbjct: 179  EESRRKNKEERSESSKQAEALTMTRGRSTER 209



 Score = 57.4 bits (137), Expect(3) = e-117
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV TA Y+IN+ PS AI  KTP E+W G P  Y +L + GC
Sbjct: 610 WAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGC 653


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  302 bits (773), Expect(3) = e-117
 Identities = 160/360 (44%), Positives = 225/360 (62%), Gaps = 9/360 (2%)
 Frame = -3

Query: 1192 KRKNEKDKEVEQVNAIV---EDD----YESADVLVVATDKCDKQWILDSGCSFHMTPNKD 1034
            K+  EK  E       V    DD    Y  A V     ++    WI+DSG ++HMTP +D
Sbjct: 247  KKSGEKSSEASTSQGCVASTSDDGEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRD 306

Query: 1033 WFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGML 854
            WF TY+ +  G V +GN+    ++GIGTV++K +DGT R L EVRH+ +L +NL+S+G L
Sbjct: 307  WFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQL 366

Query: 853  DHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQAST-VIGIAAIVTHAKLSKSQLW 680
            D  GY Y    G+LKV KGS+VVMK  + +  LY L   T  +  A++   ++   + +W
Sbjct: 367  DDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASVAVGSQEETTMMW 426

Query: 679  HRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVH 500
            HR+LGH+SERGL+ L ++ L+ G K   L FCE+CV  K  R+KF  ST  ++  L  +H
Sbjct: 427  HRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHILDLIH 486

Query: 499  FDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVK 320
             D+W  S   ++GG +YF+S IDD S+++WVY  K K   +S FK +K  VE++TGK++K
Sbjct: 487  SDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIK 545

Query: 319  KLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 140
             LRTDNG E+ + +F   C +EG+ R  TV  TPQQNG+AERMNRTLLER R ML +A +
Sbjct: 546  CLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGL 605



 Score =  110 bits (276), Expect(3) = e-117
 Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 12/211 (5%)
 Frame = -2

Query: 1886 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKKK-----AYNTL 1722
            +K EI KFNGSN FSLWK+K+ A+L       A+ G    P    D+K+K     A   L
Sbjct: 3    AKFEIPKFNGSN-FSLWKLKIKAILRKDNCLPAIDGR---PADITDDKRKEMDDNAVANL 58

Query: 1721 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 1542
             L+++D +L  + + KT+ ++W  L  LY  K+L N ++LK + +TF+M +   + +HI+
Sbjct: 59   HLAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHIN 118

Query: 1541 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGR--ETITLDDVVGALSS 1368
              N ++  L        + ++A VLL SLP SY+  V  + +    + ++ +DV GA+  
Sbjct: 119  NLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILE 178

Query: 1367 KELQRKNELKEQTG----EGL-VVQGRSDRR 1290
            +E +RKN+   Q      E L V +GRS  R
Sbjct: 179  EESRRKNKEDRQDSSKQMEALTVTRGRSTER 209



 Score = 60.5 bits (145), Expect(3) = e-117
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EA  TA Y+IN+ PS AIG KTP E+W G P  Y +LR+ GC
Sbjct: 610 WAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSLRVFGC 653



 Score = 62.8 bits (151), Expect = 9e-07
 Identities = 24/55 (43%), Positives = 40/55 (72%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLC 2682
            +N  +H RTKHI ++++F+R++V EG V ++KIH  +N  +++TKP+ S KF  C
Sbjct: 1242 RNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKFIWC 1296


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  302 bits (774), Expect(3) = e-116
 Identities = 158/361 (43%), Positives = 229/361 (63%), Gaps = 9/361 (2%)
 Frame = -3

Query: 1195 LKRKNEKDKEVEQVNAIVEDDYESADVL---VVATDKCDKQ----WILDSGCSFHMTPNK 1037
            +K+  EK+ E       V    +  ++L      + K +++    WI+DSG ++HMTP++
Sbjct: 246  IKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHR 305

Query: 1036 DWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGM 857
            DWF +Y+ I  G V +GN+    + G+GT+RLK HDGT R +  VRH+  LK+NL+S+G 
Sbjct: 306  DWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQ 365

Query: 856  LDHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQASTVIGI-AAIVTHAKLSKSQL 683
            LD  G       G+LKV KG++VVMK  + ++ LY L   T+    A++   ++   + +
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAASSQEETTMM 425

Query: 682  WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 503
            WH++LGH+SERGL+ L ++ LL+G K   L FCE+CV  K  R+KF   T  ++  L  +
Sbjct: 426  WHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLI 485

Query: 502  HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 323
            H D+W  S   +LGG RYF+S IDD S+++WVY  K K + F  FKA+K  +E++T KK+
Sbjct: 486  HSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKI 544

Query: 322  KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 143
            K LRTDNG E+++ EF   C +EG+VR  TV  TPQQNG+AERMNRTLLER R ML +A 
Sbjct: 545  KCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 142  M 140
            M
Sbjct: 605  M 605



 Score =  112 bits (279), Expect(3) = e-116
 Identities = 74/211 (35%), Positives = 114/211 (54%), Gaps = 12/211 (5%)
 Frame = -2

Query: 1886 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKKK-----AYNTL 1722
            +K EIEKFNG N FSLWK+K+ A+L      +A+ G    P    DEK K     A   L
Sbjct: 3    AKFEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGR---PADITDEKWKEMDDNAVANL 58

Query: 1721 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 1542
             L+++D +L  + + KT+ E+W  L  LY  K+L N ++LK + +T +M +   + +HI+
Sbjct: 59   HLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHIN 118

Query: 1541 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITL--DDVVGALSS 1368
              N L+  L     +  + ++A +LL SLP SY+  +  + +   T TL  DDV GA+  
Sbjct: 119  TLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILE 178

Query: 1367 KELQRKN-----ELKEQTGEGLVVQGRSDRR 1290
            +E +RKN     E  +Q     + +GRS  R
Sbjct: 179  EESRRKNKEERSESSKQAEALTMTRGRSTER 209



 Score = 57.4 bits (137), Expect(3) = e-116
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV TA Y+IN+ PS AI  KTP E+W G P  Y +L + GC
Sbjct: 610 WAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGC 653



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 41/55 (74%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLC 2682
            +N  +H RTKHI ++++F+R++V EG V ++KIH ++N  +++TKP+ + KF  C
Sbjct: 1242 RNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWC 1296


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  304 bits (779), Expect(3) = e-116
 Identities = 161/360 (44%), Positives = 228/360 (63%), Gaps = 9/360 (2%)
 Frame = -3

Query: 1192 KRKNEKDKEVEQVNAIVEDDYESADVL---VVATDKCDKQ----WILDSGCSFHMTPNKD 1034
            K+  EK+ E       V    +  ++L      + + ++Q    WI+DSG ++HMTP++D
Sbjct: 247  KKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRD 306

Query: 1033 WFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGML 854
            WF +Y+ I  G V +GN+    + G+GT+RLK HDGT R +  VRH+  LK+NL+S+G L
Sbjct: 307  WFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQL 366

Query: 853  DHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQASTVIGIAAIVTHAKLSKS-QLW 680
            D  G       G+LKV KG++VVMK  + ++ LY L   T+    A V  A   ++  +W
Sbjct: 367  DDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMW 426

Query: 679  HRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVH 500
            H++LGH+SERGL+ L ++ LL+G K   L FCE+CV  K  R+KF   T  ++  L  +H
Sbjct: 427  HQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIH 486

Query: 499  FDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVK 320
             D+W  S   +LGG RYF+S IDD S+++WVY  K K + F  FKA+K  +E++TGKK+K
Sbjct: 487  SDVW-ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIK 545

Query: 319  KLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 140
             LRTDNG E+++ EF   C +EG+VR  TV  TPQQNG+AERMNRTLLER R ML +A M
Sbjct: 546  CLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEM 605



 Score =  109 bits (272), Expect(3) = e-116
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
 Frame = -2

Query: 1886 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKKK-----AYNTL 1722
            +K EIEKFNG   FSLWK+K+ A+L      +A+ G    P    DEK K     A   L
Sbjct: 3    AKFEIEKFNGRK-FSLWKLKIRAILRKDNCLDAIDGR---PADITDEKWKEMDDNAVANL 58

Query: 1721 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 1542
             L+++D +L  + + KT+ E+W  L  LY  K+L N ++LK + +T +M +   + +HI+
Sbjct: 59   HLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHIN 118

Query: 1541 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGR--ETITLDDVVGALSS 1368
              N L+  L     +  + ++A +LL SLP SY+  +  + +    +T+  DDV GA+  
Sbjct: 119  TLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILE 178

Query: 1367 KELQRKN-----ELKEQTGEGLVVQGRSDRR 1290
            +E +RKN     E  +Q     + +GRS  R
Sbjct: 179  EESRRKNKEERSESSKQAEALTMTRGRSTER 209



 Score = 55.8 bits (133), Expect(3) = e-116
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV TA Y+IN+ PS  I  KTP E+W G P  Y +L + GC
Sbjct: 610 WAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSLHVFGC 653



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 41/55 (74%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLC 2682
            +N  +H RTKHI ++++F+R++V EG V ++KIH ++N  +++TKP+ + KF  C
Sbjct: 1242 RNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWC 1296


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  311 bits (797), Expect(3) = e-115
 Identities = 150/346 (43%), Positives = 223/346 (64%), Gaps = 1/346 (0%)
 Frame = -3

Query: 1189 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 1010
            RK + + E      ++ +    ++ L V        W+LDSGC+ HM+  +DWF +++  
Sbjct: 282  RKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARRDWFCSFRED 341

Query: 1009 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 830
             G  +LLG++      G G+++++TH GT   L  V+++P+L+RNLIS G LD  GY ++
Sbjct: 342  GGPTILLGDDHSVKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYKHE 401

Query: 829  GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 650
            GGDG ++ FK     ++G   NGLY L  +TV+    +   +K  K++LWH +LGH+   
Sbjct: 402  GGDGKVRYFKNQKTALRGELVNGLYILDGNTVLSETCVAEGSK-GKTELWHSRLGHIGLN 460

Query: 649  GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSR-H 473
             ++ L  +GL+  +++  L+FCENCV GKA +V FN   + + + L YVH DLWG +   
Sbjct: 461  NMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVLRYVHADLWGSTNVT 520

Query: 472  ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 293
             +L G +YF+SIIDD ++KVW+Y  ++KDE F +F  WK++VE Q  KKVK LRTDNGLE
Sbjct: 521  PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLE 580

Query: 292  FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 155
            F N++FD  C + G+ RHKT   TPQQNG+AERMNRT++E+VRCML
Sbjct: 581  FCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCML 626



 Score =  107 bits (266), Expect(3) = e-115
 Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 37/269 (13%)
 Frame = -2

Query: 1892 TTSKQEIEKFNGSNDFSLWKMKMLALLGNLGL------------------------DEAL 1785
            T  K   + FN ++DFSLWK  M A LG  GL                        D   
Sbjct: 9    TILKTSFQVFNENSDFSLWKTCMKAHLGLAGLKGIIDDFDLTMTVPIPKSEGKKIEDGDE 68

Query: 1784 QGEAKMPTTY*D-----EKKKAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTL 1620
            QG++       D     + + A N +I  + D +LR++   K++AE+W  L   YM  +L
Sbjct: 69   QGDSSQTKIVPDLVKIEKSENAMNIIIAHVGDAVLRKIDHCKSAAEMWETLNKQYMETSL 128

Query: 1619 SNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYE 1440
             N +Y++ KF++FKM D K +  +++EF K+  +L ++++   +E +A++ L+ L   Y 
Sbjct: 129  PNRIYVQLKFYSFKMNDTKSINENVNEFLKIVAELSSLEINVVEEVRAILFLNRLSSRYS 188

Query: 1439 TFVDILKHGRETITLDDVVGALSS--KELQRKNELKEQTGEGLVV------QGRSDRREF 1284
                 LK+G + ++L DV+ A  S  +EL  + E  + T   L        Q R+     
Sbjct: 189  QLKHTLKYGNKALSLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRPQTRNQNHNK 248

Query: 1283 XXXXXXXXXXXXXXXXXSYFCHEEGHIRR 1197
                              ++C +EGH+++
Sbjct: 249  GGQGRGRSKSNSNAKLTCWYCKKEGHVKK 277



 Score = 49.3 bits (116), Expect(3) = e-115
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCV 3
           W EA  TAAYLIN+ P+ AI    PEE+W    P Y +LR  G +
Sbjct: 636 WAEAAATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSI 680


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  302 bits (773), Expect(3) = e-115
 Identities = 160/361 (44%), Positives = 228/361 (63%), Gaps = 9/361 (2%)
 Frame = -3

Query: 1195 LKRKNEKDKEVEQVNAIVEDDYESADVL---VVATDKCDKQ----WILDSGCSFHMTPNK 1037
            +K+  EK+ E       V    +  ++L      + K +++    WI+DSG ++HMTP++
Sbjct: 246  IKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHR 305

Query: 1036 DWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGM 857
            DWF +Y+ I  G V +GN+    + G+GT+RLK HDGT R +  VRH+  LK+NL+S+G 
Sbjct: 306  DWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQ 365

Query: 856  LDHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQASTVIGIAAIVTHAKLSKS-QL 683
            LD  G       G+LKV KG++VVMK  + ++ LY L   T+    A V  A   ++  +
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMM 425

Query: 682  WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 503
            WH++LGH+SERGL+ L ++ LL+G K   L FCE+CV  K  R+KF   T  ++  L  +
Sbjct: 426  WHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLI 485

Query: 502  HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 323
            H D+W  S   +LGG RYF+S IDD S+++WVY  K K + F  FKA+K  +E++T KK+
Sbjct: 486  HSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKI 544

Query: 322  KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 143
            K LRTDNG E+++ EF   C +EG+VR  TV  TPQQNG+AERMNRTLLER R ML +A 
Sbjct: 545  KCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 142  M 140
            M
Sbjct: 605  M 605



 Score =  108 bits (270), Expect(3) = e-115
 Identities = 72/211 (34%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
 Frame = -2

Query: 1886 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKKK-----AYNTL 1722
            +K EIEKFNG N FSLWK+K+ A+L      +A+ G     T   DEK K     A   L
Sbjct: 3    AKFEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRLADIT---DEKWKEMDDNAVANL 58

Query: 1721 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 1542
             L+++D +L  + + KT+ E+W  L  LY  K+L N ++LK + +T +M +   + +HI+
Sbjct: 59   HLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHIN 118

Query: 1541 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGR--ETITLDDVVGALSS 1368
              N L+  L     +    ++A +LL SLP SY+  +  + +    +T+  DDV GA+  
Sbjct: 119  TLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILE 178

Query: 1367 KELQRKN-----ELKEQTGEGLVVQGRSDRR 1290
            +E +RKN     E  +Q     + +GRS  R
Sbjct: 179  EESRRKNKEERSESSKQAEALTMTRGRSTER 209



 Score = 55.8 bits (133), Expect(3) = e-115
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EA  TA Y+IN+ PS AI  KTP E+W G P  Y +L + GC
Sbjct: 610 WAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGC 653



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 41/55 (74%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLC 2682
            +N  +H RTKHI ++++F+R++V EG V ++KIH ++N  +++TKP+ + KF  C
Sbjct: 1242 RNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFVWC 1296


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  385 bits (989), Expect(2) = e-113
 Identities = 193/351 (54%), Positives = 247/351 (70%), Gaps = 6/351 (1%)
 Frame = -3

Query: 1171 KEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 998
            KE E   A+V D+   A++LV      +   QWILD+ C++HM PN+DWF TY+ + GG 
Sbjct: 268  KEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGT 327

Query: 997  VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 818
            VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y GGDG
Sbjct: 328  VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDG 387

Query: 817  VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 650
            +LKV KGS+VVMK  ++S  LY LQ +T++G  A V+ + LS S    LWH +LGH+SE 
Sbjct: 388  ILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDS-LSNSDATNLWHMRLGHMSEI 446

Query: 649  GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 470
            GL EL K+GLL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+R  
Sbjct: 447  GLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 506

Query: 469  TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 290
            + GG RY ++I+DD S+KVW Y  K K +AF+ FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 507  SFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEF 566

Query: 289  LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 137
             +  F   C  EG+VRH TV  TPQQNG+AERMNR ++ + RCML +A +P
Sbjct: 567  CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLP 617



 Score = 54.7 bits (130), Expect(2) = e-113
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV+TA YLIN+ PS A   KTP E+W+G P +Y +L++ GC
Sbjct: 621 WAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPANYSDLKVFGC 663



 Score =  145 bits (365), Expect = 1e-31
 Identities = 84/208 (40%), Positives = 128/208 (61%), Gaps = 7/208 (3%)
 Frame = -2

Query: 1892 TTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNT 1725
            T+ K ++   +    FSLW++KM A+L    LD+AL G  K    +  DEKK   KA + 
Sbjct: 2    TSLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKRDRKAMSY 61

Query: 1724 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 1545
            + L LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F  K+ D   + +H+
Sbjct: 62   IHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHL 121

Query: 1544 DEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSK 1365
              F ++  DLE+++V+YD++D AL+LL SLP SY  F D + + R+T+TL +V  AL +K
Sbjct: 122  SAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAK 181

Query: 1364 ELQRK---NELKEQTGEGLVVQGRSDRR 1290
            E  +K   +E      EGLVV+G    +
Sbjct: 182  EKMKKMVPSEGSNSQAEGLVVRGSQQEK 209



 Score = 77.0 bits (188), Expect = 4e-11
 Identities = 31/61 (50%), Positives = 48/61 (78%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNIIN 2667
            K+ M+HERTKHID++++FIR ++AEG V + KI   +NP +M+TKPV ++KF LC +++ 
Sbjct: 1119 KDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVG 1178

Query: 2666 V 2664
            V
Sbjct: 1179 V 1179


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  376 bits (966), Expect(2) = e-113
 Identities = 189/351 (53%), Positives = 245/351 (69%), Gaps = 6/351 (1%)
 Frame = -3

Query: 1171 KEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 998
            KE E   A+V D+   A++LV      +   QWIL++ C +HM PN+DWF TY+ +  G 
Sbjct: 475  KEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGT 534

Query: 997  VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 818
            VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y GGDG
Sbjct: 535  VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDG 594

Query: 817  VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 650
            +LKV KGS+VVMK  ++S  LY L+ +T++G  A V+ + LS S    LWH +LGH++E 
Sbjct: 595  ILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHMTEI 653

Query: 649  GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 470
            GL EL K+GLL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+R  
Sbjct: 654  GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 713

Query: 469  TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 290
            + GG RY ++I+DD S+KVW Y  K K +AF  FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 714  SFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEF 773

Query: 289  LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 137
             +  F   C  EG+VRH TV  TPQQNG+AERMNRT++ + RC+L +A +P
Sbjct: 774  CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLP 824



 Score = 61.6 bits (148), Expect(2) = e-113
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = -2

Query: 137 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGC 6
           W EAV+TA YLIN+ PS AI  KTP E+W+G P +Y +LR+ GC
Sbjct: 828 WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGC 871



 Score =  137 bits (346), Expect = 2e-29
 Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 7/193 (3%)
 Frame = -2

Query: 1847 FSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNTLILSLSDKILREVTK 1680
            FSLW++KM A+L    LD+AL G  K    +  DEKK   KA + + L LS+ IL+EV K
Sbjct: 224  FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 283

Query: 1679 MKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQV 1500
             + +A +WLKLE + MTK L++ ++LK   F  K+ D   + +H+  F ++  DLE+++V
Sbjct: 284  EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 343

Query: 1499 EYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQRK---NELKEQT 1329
            +YD+ED  L+LL SLP SY  F D + + R+T+TL +V  AL  KE  +K   +E     
Sbjct: 344  KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 403

Query: 1328 GEGLVVQGRSDRR 1290
             EGL+V GR   +
Sbjct: 404  AEGLIVWGRQQEK 416



 Score = 76.3 bits (186), Expect = 8e-11
 Identities = 31/59 (52%), Positives = 48/59 (81%)
 Frame = -2

Query: 2846 KNHMYHERTKHIDIKFYFIRDIVAEGKVTIKKIHMDNNPENMLTKPVTSSKFNLCLNII 2670
            K+ M+HERTKHID++++FIR ++AEG V I KI + +NP +M+TKPV ++KF LC +++
Sbjct: 1477 KDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLV 1535