BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00026402
         (697 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35661.3| unnamed protein product [Vitis vinifera]              105   1e-20
ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal doma...   103   7e-20
ref|XP_007225412.1| hypothetical protein PRUPE_ppa000589mg [Prun...    98   2e-18
gb|EXB81217.1| RNA polymerase II C-terminal domain phosphatase-l...    94   6e-17
ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphat...    90   6e-16
ref|XP_002297869.2| CTD phosphatase-like protein 3 [Populus tric...    86   2e-14
ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citr...    82   2e-13
ref|XP_006438858.1| hypothetical protein CICLE_v10030535mg [Citr...    82   2e-13
ref|XP_006438857.1| hypothetical protein CICLE_v10030535mg [Citr...    82   2e-13
ref|XP_002304648.2| hypothetical protein POPTR_0003s16280g [Popu...    81   4e-13
ref|XP_002304714.2| hypothetical protein POPTR_0003s16280g [Popu...    81   4e-13
ref|XP_002512650.1| RNA polymerase II ctd phosphatase, putative ...    80   6e-13
ref|XP_007139315.1| hypothetical protein PHAVU_008G019000g [Phas...    79   1e-12
ref|XP_004310239.1| PREDICTED: RNA polymerase II C-terminal doma...    75   3e-11
ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...    74   4e-11
ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal doma...    74   4e-11
ref|XP_003530482.2| PREDICTED: RNA polymerase II C-terminal doma...    69   1e-09
ref|XP_003621644.1| RNA polymerase II C-terminal domain phosphat...    67   4e-09
ref|XP_004492029.1| PREDICTED: RNA polymerase II C-terminal doma...    65   2e-08
ref|XP_004492028.1| PREDICTED: RNA polymerase II C-terminal doma...    65   2e-08

>emb|CBI35661.3| unnamed protein product [Vitis vinifera]
          Length = 1184

 Score =  105 bits (263), Expect = 1e-20
 Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 13/204 (6%)
 Frame = +3

Query: 123 LNLPSDHDGDR----TLDTLQLFPIQNQSDSATCTVSDKTEDAAVLPYETDALRAVSTYQ 290
           L+L  DHD D     T    Q FP+ N+S+  T  V+ +T+D+ + PYETDAL+AVSTYQ
Sbjct: 366 LDLHKDHDEDSLPSPTGKAPQCFPV-NKSELVTAKVAHETQDSIMHPYETDALKAVSTYQ 424

Query: 291 QRFN-SSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSVPVQPFTYATP 467
           Q+F  +SFL  ++LPSPTP                   T S+  T N      P   + P
Sbjct: 425 QKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAP 484

Query: 468 IVDCSSEQESIPAKTGQLGSCLNPILKAMPKSKDPR--------RALDLKQQSLTVDYNV 623
            +D   +   +P  TG + S  N IL+A  KS+DPR         +LDL ++ L    N 
Sbjct: 485 QMDI-VQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNS 543

Query: 624 PKREPIVGTMCSRKHKIVKESVLD 695
           PK +P+   + SRK K  +E +LD
Sbjct: 544 PKVDPLGEIVSSRKQKSAEEPLLD 567


>ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Vitis vinifera]
          Length = 1238

 Score =  103 bits (256), Expect = 7e-20
 Identities = 84/246 (34%), Positives = 119/246 (48%), Gaps = 18/246 (7%)
 Frame = +3

Query: 12   STKKFHLEPVSVQ-YRDQNDSNMEFKTLKSKGYGGVGSL-NLPSDHDGDR----TLDTLQ 173
            S KK  L+ +SV+ Y   N   ++     S+G    G L +L  DHD D     T    Q
Sbjct: 341  SAKKLSLDSISVESYNQNNPDALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQ 400

Query: 174  LFPIQNQSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRFN-SSFLLSNRLPSPTPXX 350
             FP+ N+S+  T  V+ +T+D+ + PYETDAL+AVSTYQQ+F  +SFL  ++LPSPTP  
Sbjct: 401  CFPV-NKSELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSE 459

Query: 351  XXXXXXXXXXXXXXXXXTASSIKTENPSVPVQPFTYATPIVDCSSEQESIPAKTGQL--- 521
                             T S+  T N      P   + P +D S  Q     +   L   
Sbjct: 460  ESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSS 519

Query: 522  GSCLNPILKAMPKSKDPR--------RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIV 677
            G  L+  + A  KS+DPR         +LDL ++ L    N PK +P+   + SRK K  
Sbjct: 520  GPHLDSSVVASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSA 579

Query: 678  KESVLD 695
            +E +LD
Sbjct: 580  EEPLLD 585


>ref|XP_007225412.1| hypothetical protein PRUPE_ppa000589mg [Prunus persica]
           gi|462422348|gb|EMJ26611.1| hypothetical protein
           PRUPE_ppa000589mg [Prunus persica]
          Length = 1085

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 80/217 (36%), Positives = 111/217 (51%), Gaps = 26/217 (11%)
 Frame = +3

Query: 123 LNLPSDHDGDR----TLDTLQLFPIQNQ-----------SDSATCTVSDKTEDAAVLPYE 257
           L+L  DHD D     T +T   FP+QN            SD+AT  V+   ED+ +  YE
Sbjct: 205 LDLHKDHDADSLPSPTRETPSCFPVQNTLVVADGMVKSASDTATARVALNAEDSRLHSYE 264

Query: 258 TDALRAVSTYQQRFN-SSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPS 434
           T+AL+AVS+YQQ+FN SSFL+S RLPSPTP                    AS+++T  P 
Sbjct: 265 TEALKAVSSYQQKFNRSSFLMSERLPSPTPSEDGGNGDDDTGGEVSSSF-ASNLRTSCPP 323

Query: 435 VPVQPFTYATPI-VDCSSEQESIPAKT-GQLGSCLNPILKAMPKSKDPR--------RAL 584
           +  +     +PI V   S Q    AK+     S  +  +KA  KS+DPR         AL
Sbjct: 324 ISGRQIVSPSPIPVGSPSMQGRATAKSAAPPNSEPSMTIKASAKSRDPRLRFANSDMGAL 383

Query: 585 DLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
           +L QQ  TV ++ PK + ++ T+ SRK K ++ES  D
Sbjct: 384 NLNQQPSTVVHSAPKVDSVI-TLSSRKQKPLEESRFD 419


>gb|EXB81217.1| RNA polymerase II C-terminal domain phosphatase-like 3 [Morus
            notabilis]
          Length = 1301

 Score = 93.6 bits (231), Expect = 6e-17
 Identities = 85/229 (37%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
 Frame = +3

Query: 87   TLKSKGYGGV-GSLNLPSDHDGDR----TLDTLQLFPIQN---------QSDSATCTVSD 224
            TL  KG G +   L+L  DHD D     T +    FP+           +  S T  V+ 
Sbjct: 386  TLAFKGRGLLLPLLDLHKDHDADSLPSPTREAPSCFPVYKPLGVADGIIKPVSTTAKVAP 445

Query: 225  KTEDAAVLPYETDALRAVSTYQQRF-NSSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXX 401
              E++ +  YETDAL+AVSTYQQ+F   SFL+S+RLPSPTP                   
Sbjct: 446  GAEESRLHRYETDALKAVSTYQQKFGRGSFLMSDRLPSPTP-SEECDEEDDINQEVSSSL 504

Query: 402  TASSIKTENPSVPVQPFTYATPIVDCSSE--QESIPAK-TGQLGSCLNPILKAMPKSKDP 572
            T+ +++T  P++P+   +  T  V  SS   Q  I AK    +GS  N  +KA  +S+DP
Sbjct: 505  TSGNLRT--PAIPILRPSVVTSSVPVSSPTMQGPIAAKNAAPVGSGSNSTMKASARSRDP 562

Query: 573  R--------RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
            R         ALDL Q+ LT  +N PK EP   T  SRK +IV+E  LD
Sbjct: 563  RLRFANSDAGALDLNQRPLTAVHNGPKVEPGDPT-SSRKQRIVEEPNLD 610


>ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphatase-like 3, putative
            [Theobroma cacao] gi|508707765|gb|EOX99661.1| RNA
            polymerase II C-terminal domain phosphatase-like 3,
            putative [Theobroma cacao]
          Length = 1290

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 84/254 (33%), Positives = 116/254 (45%), Gaps = 34/254 (13%)
 Frame = +3

Query: 36   PVSVQYRDQNDSNMEFKTLK-------SKGYGGVGSLNLPSDHDGDR----TLDTLQLFP 182
            P S ++   N  N   +TLK       ++G   +  L+L  DHD D     T +T    P
Sbjct: 364  PSSAKFVINNKPNALTETLKPGVPNFRNRGIS-LPLLDLHKDHDADSLPSPTRETTPCLP 422

Query: 183  IQNQSDSATCTV---------SDKTEDAAVLPYETDALRAVSTYQQRF-NSSFLLSNRLP 332
            +     S    V         S   E   + PYETDAL+A STYQQ+F   SF  S+RLP
Sbjct: 423  VNKPLTSGDVMVKSGFMTGKGSHDAEGDKLHPYETDALKAFSTYQQKFGQGSFFSSDRLP 482

Query: 333  SPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSVPV--QPFTYATPIVD--CSSEQESI 500
            SPTP                   ++SSI    P++P+   P   + P+VD   SS Q  I
Sbjct: 483  SPTP---SEESGDEGGDNGGEVSSSSSIGNFKPNLPILGHPIVSSAPLVDSASSSLQGQI 539

Query: 501  PAKTG-QLGSCLNPILKAMPKSKDPR--------RALDLKQQSLTVDYNVPKREPIVGTM 653
              +    + S  N + K++ KS+DPR         ALDL ++ L   +N  K  P+ G M
Sbjct: 540  TTRNATPMSSVSNIVSKSLAKSRDPRLWFANSNASALDLNERLL---HNASKVAPVGGIM 596

Query: 654  CSRKHKIVKESVLD 695
             SRK K V+E +LD
Sbjct: 597  DSRKKKSVEEPILD 610


>ref|XP_002297869.2| CTD phosphatase-like protein 3 [Populus trichocarpa]
            gi|550347145|gb|EEE82674.2| CTD phosphatase-like protein
            3 [Populus trichocarpa]
          Length = 1190

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 77/248 (31%), Positives = 107/248 (43%), Gaps = 36/248 (14%)
 Frame = +3

Query: 60   QNDSNMEFKTLKSKGYGGVGS-------LNLPSDHDGDRTLDTLQL---FPIQN------ 191
            QN  N   +  K  G     S       L+L   HD D      Q    FP+Q       
Sbjct: 283  QNKPNKSIEAPKPPGVPSFKSRGVLLPLLDLKKYHDEDSLPSPTQETTPFPVQRLLAIGD 342

Query: 192  ---QSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRFNSSFLLSNRLPSPTPXXXXXX 362
                S      V+   E+  + PYETDAL+AVS+YQQ+FN +   +N LPSPTP      
Sbjct: 343  GMVSSGLPVPKVTPVAEEPRMHPYETDALKAVSSYQQKFNRNSFFTNELPSPTPSEESGN 402

Query: 363  XXXXXXXXXXXXXTASSIKTENPSVPVQ--------PFTYATPIVDCSSEQESIPAK-TG 515
                         T  + +T NP V  Q        P     P  D S+ +  +P + + 
Sbjct: 403  GDGDTAGEVSSSSTVVNYRTVNPPVSDQKNAPPSPPPLPPPPPHPDSSNIRGVVPTRNSA 462

Query: 516  QLGSCLNPILKAMPKSKDPRR--------ALDLKQQSLTVDYNVPKREPIVGTMCSRKHK 671
             + S  +  +KA  KS+DPR         ALD  Q++L +  N+P+ EP    + S+KHK
Sbjct: 463  PVSSGPSSTIKASAKSRDPRLRYVNIDACALDHNQRALPMVNNLPRVEPAGAIVGSKKHK 522

Query: 672  IVKESVLD 695
            I +E VLD
Sbjct: 523  I-EEDVLD 529


>ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|568858958|ref|XP_006483010.1| PREDICTED: RNA
            polymerase II C-terminal domain phosphatase-like 3-like
            [Citrus sinensis] gi|557541056|gb|ESR52100.1|
            hypothetical protein CICLE_v10030535mg [Citrus
            clementina]
          Length = 1234

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 84/252 (33%), Positives = 109/252 (43%), Gaps = 42/252 (16%)
 Frame = +3

Query: 66   DSNMEFKTLKSK-----GYGGVGSLNLPSD----HDGDR----TLDTLQLFPIQN----- 191
            DS M+ K L++      GY   G L    D    HD D     T +T    P+Q      
Sbjct: 326  DSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVG 385

Query: 192  ----QSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRFN-SSFLLSNRLPSPTPXXXX 356
                +S +A   +S   E      YETDALRA S+YQQ+F  +SF +++ LPSPTP    
Sbjct: 386  DGVVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEES 445

Query: 357  XXXXXXXXXXXXXXXTASSIKTEN------PSVPVQPFTYATPIVDCSSEQ------ESI 500
                                K  N        V  QP   + P+ D SS Q       S 
Sbjct: 446  GDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPM-DISSVQALTTANNSA 504

Query: 501  PAKTGQLGSCL-NPILKAMPKSKDPR------RALDLKQQSLTVDYNVPKREPIVGTMCS 659
            PA +G       NP++KA  KS+DPR       AL+L  Q   + +N PK EP+   M S
Sbjct: 505  PASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSS 564

Query: 660  RKHKIVKESVLD 695
            RK K V+E VLD
Sbjct: 565  RKQKTVEEPVLD 576


>ref|XP_006438858.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|557541054|gb|ESR52098.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
          Length = 1208

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 84/252 (33%), Positives = 109/252 (43%), Gaps = 42/252 (16%)
 Frame = +3

Query: 66   DSNMEFKTLKSK-----GYGGVGSLNLPSD----HDGDR----TLDTLQLFPIQN----- 191
            DS M+ K L++      GY   G L    D    HD D     T +T    P+Q      
Sbjct: 326  DSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVG 385

Query: 192  ----QSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRFN-SSFLLSNRLPSPTPXXXX 356
                +S +A   +S   E      YETDALRA S+YQQ+F  +SF +++ LPSPTP    
Sbjct: 386  DGVVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEES 445

Query: 357  XXXXXXXXXXXXXXXTASSIKTEN------PSVPVQPFTYATPIVDCSSEQ------ESI 500
                                K  N        V  QP   + P+ D SS Q       S 
Sbjct: 446  GDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPM-DISSVQALTTANNSA 504

Query: 501  PAKTGQLGSCL-NPILKAMPKSKDPR------RALDLKQQSLTVDYNVPKREPIVGTMCS 659
            PA +G       NP++KA  KS+DPR       AL+L  Q   + +N PK EP+   M S
Sbjct: 505  PASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSS 564

Query: 660  RKHKIVKESVLD 695
            RK K V+E VLD
Sbjct: 565  RKQKTVEEPVLD 576


>ref|XP_006438857.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|567892677|ref|XP_006438859.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
            gi|557541053|gb|ESR52097.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
            gi|557541055|gb|ESR52099.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
          Length = 1118

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 84/252 (33%), Positives = 109/252 (43%), Gaps = 42/252 (16%)
 Frame = +3

Query: 66   DSNMEFKTLKSK-----GYGGVGSLNLPSD----HDGDR----TLDTLQLFPIQN----- 191
            DS M+ K L++      GY   G L    D    HD D     T +T    P+Q      
Sbjct: 326  DSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVG 385

Query: 192  ----QSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRFN-SSFLLSNRLPSPTPXXXX 356
                +S +A   +S   E      YETDALRA S+YQQ+F  +SF +++ LPSPTP    
Sbjct: 386  DGVVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEES 445

Query: 357  XXXXXXXXXXXXXXXTASSIKTEN------PSVPVQPFTYATPIVDCSSEQ------ESI 500
                                K  N        V  QP   + P+ D SS Q       S 
Sbjct: 446  GDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPM-DISSVQALTTANNSA 504

Query: 501  PAKTGQLGSCL-NPILKAMPKSKDPR------RALDLKQQSLTVDYNVPKREPIVGTMCS 659
            PA +G       NP++KA  KS+DPR       AL+L  Q   + +N PK EP+   M S
Sbjct: 505  PASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSS 564

Query: 660  RKHKIVKESVLD 695
            RK K V+E VLD
Sbjct: 565  RKQKTVEEPVLD 576


>ref|XP_002304648.2| hypothetical protein POPTR_0003s16280g [Populus trichocarpa]
            gi|550343308|gb|EEE79627.2| hypothetical protein
            POPTR_0003s16280g [Populus trichocarpa]
          Length = 1247

 Score = 80.9 bits (198), Expect = 4e-13
 Identities = 74/227 (32%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
 Frame = +3

Query: 123  LNLPSDHDGDR----TLDTLQLFPIQN---------QSDSATCTVSDKTEDAAVLPYETD 263
            L+L   HD D     T +T   FP+Q           S      V+  TE+  V PYETD
Sbjct: 341  LDLKKFHDEDSLPSPTRETAPSFPVQRLLPIGDGMISSGLPVPKVASITEEPRVHPYETD 400

Query: 264  ALRAVSTYQQRFNSSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSV-- 437
            AL+AVS+YQ++FN +   +N LPSPTP                   T  + +T NP V  
Sbjct: 401  ALKAVSSYQKKFNLNSFFTNELPSPTPSEESGNGDGDTAGEVSSSSTV-NYRTVNPPVSD 459

Query: 438  ------------PVQPFTYATPIVDCSSEQESIPAK-TGQLGSCLNPILKAMPKSKDPR- 575
                        P  P     P ++ SS +  IP + +  + S  +  +KA  KS+DPR 
Sbjct: 460  RKSASPSPSPPPPPPPPPPPPPHLNNSSIRVVIPTRNSAPVSSGTSSTVKASAKSRDPRL 519

Query: 576  -------RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
                    ALD  Q++L +  N P+ EP      SRK KI +E VLD
Sbjct: 520  RYVNTDASALDQNQRTLLMVNNPPRAEPSGAIAGSRKQKI-EEDVLD 565


>ref|XP_002304714.2| hypothetical protein POPTR_0003s16280g [Populus trichocarpa]
           gi|550343307|gb|EEE79693.2| hypothetical protein
           POPTR_0003s16280g [Populus trichocarpa]
          Length = 1030

 Score = 80.9 bits (198), Expect = 4e-13
 Identities = 74/227 (32%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
 Frame = +3

Query: 123 LNLPSDHDGDR----TLDTLQLFPIQN---------QSDSATCTVSDKTEDAAVLPYETD 263
           L+L   HD D     T +T   FP+Q           S      V+  TE+  V PYETD
Sbjct: 124 LDLKKFHDEDSLPSPTRETAPSFPVQRLLPIGDGMISSGLPVPKVASITEEPRVHPYETD 183

Query: 264 ALRAVSTYQQRFNSSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSV-- 437
           AL+AVS+YQ++FN +   +N LPSPTP                   T  + +T NP V  
Sbjct: 184 ALKAVSSYQKKFNLNSFFTNELPSPTPSEESGNGDGDTAGEVSSSSTV-NYRTVNPPVSD 242

Query: 438 ------------PVQPFTYATPIVDCSSEQESIPAK-TGQLGSCLNPILKAMPKSKDPR- 575
                       P  P     P ++ SS +  IP + +  + S  +  +KA  KS+DPR 
Sbjct: 243 RKSASPSPSPPPPPPPPPPPPPHLNNSSIRVVIPTRNSAPVSSGTSSTVKASAKSRDPRL 302

Query: 576 -------RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
                   ALD  Q++L +  N P+ EP      SRK KI +E VLD
Sbjct: 303 RYVNTDASALDQNQRTLLMVNNPPRAEPSGAIAGSRKQKI-EEDVLD 348


>ref|XP_002512650.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis]
           gi|223548611|gb|EEF50102.1| RNA polymerase II ctd
           phosphatase, putative [Ricinus communis]
          Length = 1195

 Score = 80.1 bits (196), Expect = 6e-13
 Identities = 70/204 (34%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
 Frame = +3

Query: 123 LNLPSDHDGDRTLDTLQ--LFPIQNQSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQR 296
           L+L  DHD D      +    P+          V D T ++ + PYETDAL+AVS+YQQ+
Sbjct: 316 LDLHKDHDADSLPSPTRESALPLPAYRVLTPKMVLD-TGNSRMHPYETDALKAVSSYQQK 374

Query: 297 FN-SSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSVPVQP-FTYATPI 470
           F+ SSF L++RLPSPTP                   + SS +  NP    Q   + + P 
Sbjct: 375 FSKSSFALTDRLPSPTPSEESGNGDGDTGGEVSSSLSVSSFRPANPLTSGQSNASISLPR 434

Query: 471 VDCSSEQESIPAKTG-QLGSCLNPILKAMPKSKDPR--------RALDLKQQSLTVDYNV 623
           +D SS    I  K+  +  S  +  +KA  KS+DPR         ALD   +++ V  N 
Sbjct: 435 MDGSSLPGVISIKSAVRASSAPSLTVKASAKSRDPRLRFVNSDSNALDQNHRAVPV-VNT 493

Query: 624 PKREPIVGTMCSRKHKIVKESVLD 695
            K EPI GTM  ++ KIV + + D
Sbjct: 494 LKVEPIGGTMNKKRQKIVDDPIPD 517


>ref|XP_007139315.1| hypothetical protein PHAVU_008G019000g [Phaseolus vulgaris]
            gi|561012448|gb|ESW11309.1| hypothetical protein
            PHAVU_008G019000g [Phaseolus vulgaris]
          Length = 1272

 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 71/215 (33%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
 Frame = +3

Query: 123  LNLPSDHDGDR----TLDTLQLFPIQNQSDSATCTVSDKTEDAAVLP------------- 251
            L+L  DHD D     T +    FP+          V   +  A + P             
Sbjct: 382  LDLHKDHDADSLPSPTREAPSCFPVNKLLSVGEVMVKSGSAAAKMQPGKLEVDSEGSKFH 441

Query: 252  -YETDALRAVSTYQQRFNSSFLLSN-RLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTE 425
             YETDAL+AVSTYQQ+F  S L +N +LPSPTP                   T+  + + 
Sbjct: 442  LYETDALKAVSTYQQKFGRSSLFTNDKLPSPTPSGDCDDMAVDTNEEVSSASTSGFLTST 501

Query: 426  NPSVPVQPFTYATPIVDCSSEQESIPAKTGQLGSCLNPILKAMPKSKDPRRALDLKQQS- 602
             P++  QP   AT  VD S     I ++    GS   P+ K+  KS+DPRR L   + S 
Sbjct: 502  KPTLLDQPPVSATS-VDKSRLLGLISSRVDAAGSGSFPV-KSSAKSRDPRRRLINSEASA 559

Query: 603  ----LTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
                 TV +N+PK E   G+  SRK K V+E   D
Sbjct: 560  VDNQFTVTHNMPKVE-YAGSTISRKQKAVEEPSFD 593


>ref|XP_004310239.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Fragaria vesca subsp. vesca]
          Length = 1230

 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 81/252 (32%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
 Frame = +3

Query: 39   VSVQYRDQNDSNMEFKTLKSKGYGGVGS----LNLPSDHDGDR----TLDTLQLFPIQN- 191
            VSV + + N S+ E     S  + G G     L+L  DHD D     T +    FP Q  
Sbjct: 321  VSVVHSNPNISS-EVPRSGSSSFKGRGLMLPLLDLHMDHDEDSLPSPTREPPACFPAQKP 379

Query: 192  ---------QSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRFNSSFLLSNRLPSPTP 344
                     +S   T   +   E + +  YET+AL+AVS+YQQ+F+ +  L++ LPSPTP
Sbjct: 380  VVVENGMVKKSGWETARAALDVEGSKMHVYETEALKAVSSYQQKFSRNSFLTSELPSPTP 439

Query: 345  XXXXXXXXXXXXXXXXXXXTAS-SIKTENPSV---PVQPFTYATPIVDCSSEQESIPAKT 512
                               +AS +++T  P V    V     AT +   S     I AKT
Sbjct: 440  SEEEGDNGDDAAVGEVSSSSASNNVRTPQPPVSGRQVVSSVPATTLPGSSGMHGLITAKT 499

Query: 513  G---QLGSCLNPILKAMPKSKDPR--------RALDLKQQSLTVDYNVPKREPIVGTMCS 659
                 LGS  N   K+  KS+DPR         AL L QQS    +N PK + ++ T+ S
Sbjct: 500  ASPVSLGS--NMPNKSSAKSRDPRLRFANSDAGALTLNQQSSIQVHNAPKVDSVI-TLSS 556

Query: 660  RKHKIVKESVLD 695
            RKHK  ++S  D
Sbjct: 557  RKHKSPEDSNFD 568


>ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain
           phosphatase-like 3-like [Cucumis sativus]
          Length = 1249

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
 Frame = +3

Query: 6   LNSTKKFHLEPVSVQYRDQNDSNMEFKTLKS-----KGYGGV-GSLNLPSDHDGDR---- 155
           L  + K   + +    + +N+ N+  + L+S     KG G +   L+L  DHD D     
Sbjct: 346 LTPSNKLASDSIPFGVKGKNNLNILSEGLQSGVSSIKGRGPLLPLLDLHKDHDADSLPSP 405

Query: 156 TLDTLQLFPIQNQSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRF-NSSFLLSNRLP 332
           T +   +F +Q +S +A   ++   + +   PYETDAL+AVSTYQQ+F  SSF +++RLP
Sbjct: 406 TREAPTIFSVQ-KSGNAPTKMAFPVDGSRSHPYETDALKAVSTYQQKFGRSSFSMADRLP 464

Query: 333 SPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSVPVQPFTYAT-------PIVDCSSEQ 491
           SPTP                      S+K+ N S P Q    A+       P +D SS +
Sbjct: 465 SPTP-SEEHDGGGDIGGEVSSSSIIRSLKSSNVSKPGQKSNSASNVSTGLFPNMDSSSTR 523

Query: 492 ESI-PAKTGQLGSCLNPILKAMPKSKDPR 575
             I P       S  NP +K + KS+DPR
Sbjct: 524 VLISPLNVAPPSSVSNPTVKPLAKSRDPR 552


>ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           3-like [Cucumis sativus]
          Length = 1249

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
 Frame = +3

Query: 6   LNSTKKFHLEPVSVQYRDQNDSNMEFKTLKS-----KGYGGV-GSLNLPSDHDGDR---- 155
           L  + K   + +    + +N+ N+  + L+S     KG G +   L+L  DHD D     
Sbjct: 346 LTPSNKLASDSIPFGVKGKNNLNILSEGLQSGVSSIKGRGPLLPLLDLHKDHDADSLPSP 405

Query: 156 TLDTLQLFPIQNQSDSATCTVSDKTEDAAVLPYETDALRAVSTYQQRF-NSSFLLSNRLP 332
           T +   +F +Q +S +A   ++   + +   PYETDAL+AVSTYQQ+F  SSF +++RLP
Sbjct: 406 TREAPTIFSVQ-KSGNAPTKMAFPVDGSRSHPYETDALKAVSTYQQKFGRSSFSMADRLP 464

Query: 333 SPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSVPVQPFTYAT-------PIVDCSSEQ 491
           SPTP                      S+K+ N S P Q    A+       P +D SS +
Sbjct: 465 SPTP-SEEHDGGGDIGGEVSSSSIIRSLKSSNVSKPGQKSNSASNVSTGLFPNMDSSSTR 523

Query: 492 ESI-PAKTGQLGSCLNPILKAMPKSKDPR 575
             I P       S  NP +K + KS+DPR
Sbjct: 524 VLISPLNVAPPSSVSNPTVKPLAKSRDPR 552


>ref|XP_003530482.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           3-like [Glycine max]
          Length = 1261

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 64/209 (30%), Positives = 90/209 (43%), Gaps = 18/209 (8%)
 Frame = +3

Query: 123 LNLPSDHDGDR----TLDTLQLFPIQN---------QSDSATCTVSDKTEDAAVLPYETD 263
           L+L  DHD D     T +    FP+           +S SA+  +   +E +    YETD
Sbjct: 378 LDLHKDHDADSLPSPTREAPSCFPVNKLLSVGESMVRSGSASAKMELDSEGSKFHLYETD 437

Query: 264 ALRAVSTYQQRFNSSFLLSN-RLPSPTPXXXXXXXXXXXXXXXXXXXTASSIKTENPSVP 440
           AL+AVSTYQQ+F  S L +N + PSPTP                   T   + +  P++ 
Sbjct: 438 ALKAVSTYQQKFGRSSLFTNDKFPSPTPSGDCEDEVVDTNEEVSSASTGDFLTSTKPTLL 497

Query: 441 VQPFTYATPIVDCSSEQESIPAKTGQLGSCLNPILKAMPKSKDPRRALDLKQQS----LT 608
            QP   AT  +D SS    I ++    G    P+ K+  K++DPR        S    L+
Sbjct: 498 DQPPVSATS-MDRSSMHGFISSRVDATGPGSFPV-KSSAKNRDPRLRFINSDASAVDNLS 555

Query: 609 VDYNVPKREPIVGTMCSRKHKIVKESVLD 695
              N   +    GT  SRK K  +E  LD
Sbjct: 556 TLINNMSKVEYSGTTISRKQKAAEEPSLD 584


>ref|XP_003621644.1| RNA polymerase II C-terminal domain phosphatase-like protein
           [Medicago truncatula] gi|355496659|gb|AES77862.1| RNA
           polymerase II C-terminal domain phosphatase-like protein
           [Medicago truncatula]
          Length = 1213

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
 Frame = +3

Query: 204 ATCTVSDKTE----DAAVLPYETDALRAVSTYQQRFN-SSFLLSNRLPSPTPXXXXXXXX 368
           A CT ++K E    D+ +  YETDAL+AVSTYQQ+F+ SS+   ++ PSPTP        
Sbjct: 409 AVCTEAEKMELDGKDSKLHIYETDALKAVSTYQQKFSRSSYFTDDKFPSPTPSGDCEGEA 468

Query: 369 XXXXXXXXXXXTASSIKTENPSVPVQPFTYATPIVDCSSEQESIPAKTGQLGSCLNPILK 548
                       ASS+ +  P  P+     ++  +D  +    + ++    GS   P  K
Sbjct: 469 VDTNDEVSSASIASSLTSFKPP-PLDQIPVSSTSLDRPNMHGLVDSRIDATGSGSYP-AK 526

Query: 549 AMPKSKDPR--------RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
           +  KS+DPR          LDL Q   T  +++P+ E   G + SRK K V+E  LD
Sbjct: 527 SSAKSRDPRLRFINPDASTLDLNQSLGT--HSMPRVE-YGGRVISRKQKTVEEPSLD 580


>ref|XP_004492029.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           3-like isoform X2 [Cicer arietinum]
          Length = 1227

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
 Frame = +3

Query: 228 TEDAAVLPYETDALRAVSTYQQRF-NSSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXT 404
           TE++    YETDAL+AVSTYQQ+F  SS+   ++ PSPTP                    
Sbjct: 390 TENSKNHLYETDALKAVSTYQQKFGRSSYFTDDKFPSPTPSGDCEEGVADANEEVSSASI 449

Query: 405 ASSIKTENPSVPVQPFTYATPIVDCSSEQESIPAKTGQLGSCLNPILKAMPKSKDPR--- 575
           A S+ +  P +   P +  +  VD SS    I ++     S   P+ K   +S+DPR   
Sbjct: 450 AVSLTSSKPLLDQMPVSSTS--VDRSSMHGLINSRIEAASSVTYPV-KTSARSRDPRLRF 506

Query: 576 -----RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
                 ALDL Q   T   N+PK E   G + SRK K  +E  LD
Sbjct: 507 INSDASALDLNQSLGT--NNMPKVEN-AGRVISRKQKTTEELSLD 548


>ref|XP_004492028.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           3-like isoform X1 [Cicer arietinum]
          Length = 1247

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
 Frame = +3

Query: 228 TEDAAVLPYETDALRAVSTYQQRF-NSSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXT 404
           TE++    YETDAL+AVSTYQQ+F  SS+   ++ PSPTP                    
Sbjct: 410 TENSKNHLYETDALKAVSTYQQKFGRSSYFTDDKFPSPTPSGDCEEGVADANEEVSSASI 469

Query: 405 ASSIKTENPSVPVQPFTYATPIVDCSSEQESIPAKTGQLGSCLNPILKAMPKSKDPR--- 575
           A S+ +  P +   P +  +  VD SS    I ++     S   P+ K   +S+DPR   
Sbjct: 470 AVSLTSSKPLLDQMPVSSTS--VDRSSMHGLINSRIEAASSVTYPV-KTSARSRDPRLRF 526

Query: 576 -----RALDLKQQSLTVDYNVPKREPIVGTMCSRKHKIVKESVLD 695
                 ALDL Q   T   N+PK E   G + SRK K  +E  LD
Sbjct: 527 INSDASALDLNQSLGT--NNMPKVEN-AGRVISRKQKTTEELSLD 568