BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00025197
         (440 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   123   1e-36
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              109   1e-34
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              109   1e-34
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              109   1e-34
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              109   2e-33
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   112   2e-33
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     111   8e-33
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     121   1e-32
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   117   1e-32
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     112   2e-32
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  105   2e-32
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   111   2e-32
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   110   3e-32
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     110   3e-32
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     110   3e-32
gb|AFB73911.1| polyprotein [Citrus sinensis]                          109   4e-32
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   110   6e-32
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]         107   8e-32
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   110   1e-31
gb|AFB73912.1| polyprotein [Citrus sinensis]                          109   2e-31

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  123 bits (309), Expect(2) = 1e-36
 Identities = 60/91 (65%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            V+ KK+G S    V++K R+VA+G+ Q+EG++YNE+FSPVV+H SIR+LLA+VA  NLEL
Sbjct: 840  VFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLEL 899

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             QLDVKTAFLHG L EEIYMTQP GF+V GK
Sbjct: 900  EQLDVKTAFLHGELEEEIYMTQPDGFQVPGK 930



 Score = 55.5 bits (132), Expect(2) = 1e-36
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = -2

Query: 439 YALPVVEE---NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIRC 269
           YAL V EE   + PSTY  A   S +  W  AM ++M SLHKN TW+L   P G+K I C
Sbjct: 778 YALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITC 837


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  109 bits (273), Expect(2) = 1e-34
 Identities = 54/90 (60%), Positives = 67/90 (74%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            VY  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  +IR++LA+ A  +L L 
Sbjct: 837  VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLE 896

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            QLDVKTAFLHG L EEIYM QP GFK  GK
Sbjct: 897  QLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926



 Score = 62.4 bits (150), Expect(2) = 1e-34
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = -2

Query: 427 VVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           + EE  PST+H A  GS A+ W  AM E+M +LH+N TWEL  LP+G+KAI
Sbjct: 782 ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAI 832


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  109 bits (273), Expect(2) = 1e-34
 Identities = 54/90 (60%), Positives = 67/90 (74%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            VY  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  +IR++LA+ A  +L L 
Sbjct: 837  VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLE 896

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            QLDVKTAFLHG L EEIYM QP GFK  GK
Sbjct: 897  QLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926



 Score = 62.4 bits (150), Expect(2) = 1e-34
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = -2

Query: 427 VVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           + EE  PST+H A  GS A+ W  AM E+M +LH+N TWEL  LP+G+KAI
Sbjct: 782 ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAI 832


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  109 bits (273), Expect(2) = 1e-34
 Identities = 54/90 (60%), Positives = 67/90 (74%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            VY  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  +IR++LA+ A  +L L 
Sbjct: 837  VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLE 896

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            QLDVKTAFLHG L EEIYM QP GFK  GK
Sbjct: 897  QLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926



 Score = 62.4 bits (150), Expect(2) = 1e-34
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = -2

Query: 427 VVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           + EE  PST+H A  GS A+ W  AM E+M +LH+N TWEL  LP+G+KAI
Sbjct: 782 ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAI 832


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  109 bits (273), Expect(2) = 2e-33
 Identities = 54/90 (60%), Positives = 67/90 (74%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            VY  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  +IR++LA+ A  +L L 
Sbjct: 837  VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLE 896

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            QLDVKTAFLHG L EEIYM QP GFK  GK
Sbjct: 897  QLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926



 Score = 58.9 bits (141), Expect(2) = 2e-33
 Identities = 27/51 (52%), Positives = 35/51 (68%)
 Frame = -2

Query: 427 VVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           + EE  PST+H A  GS A+ W  A+ E+M +L KN TWEL  LP+G+KAI
Sbjct: 782 IAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAI 832


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  112 bits (281), Expect(2) = 2e-33
 Identities = 54/91 (59%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S  ++ R+K RL+AKGY+Q  GI++N+VFSPVVKH SIR LL++VA ++ EL
Sbjct: 1072 IFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYEL 1131

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q+DVKTAFLHG L E+IYM QP GF V GK
Sbjct: 1132 EQMDVKTAFLHGELEEDIYMEQPKGFVVPGK 1162



 Score = 55.5 bits (132), Expect(2) = 2e-33
 Identities = 31/61 (50%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439  YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
            YAL V EE      PSTY  A      N W  AM ++M SL KN TWEL  LP+ KK IR
Sbjct: 1009 YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 1068

Query: 271  C 269
            C
Sbjct: 1069 C 1069


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  111 bits (277), Expect(2) = 8e-33
 Identities = 54/91 (59%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S  ++ R+K RLVAKGY+Q  GI++N+VFSPV+KH SIR LL++VA ++ EL
Sbjct: 744  IFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYEL 803

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q+DVKTAFLHG L E+IYM QP GF V GK
Sbjct: 804  EQMDVKTAFLHGELEEDIYMEQPEGFVVPGK 834



 Score = 55.1 bits (131), Expect(2) = 8e-33
 Identities = 31/61 (50%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439 YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
           YAL V EE      PSTY  A      N W  AM ++M SL KN TWEL  LP+ KK IR
Sbjct: 681 YALSVAEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 740

Query: 271 C 269
           C
Sbjct: 741 C 741


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  121 bits (303), Expect(2) = 1e-32
 Identities = 56/91 (61%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQGSQEND-VRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            V+ KK+G  E+D + +K RLVAKGY+QKEG++Y+E+FSPVVKH SIR+LL++ A Y++E+
Sbjct: 831  VFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEI 890

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q+DVKTAFLHG+L E+IYM+QP GF   GK
Sbjct: 891  EQMDVKTAFLHGDLEEDIYMSQPEGFVETGK 921



 Score = 44.7 bits (104), Expect(2) = 1e-32
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -2

Query: 424 VEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIRC 269
           + +  P+TY  A    ++  W  AM E+M SLHKN  WEL   P+ +K + C
Sbjct: 777 ISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGC 828


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  117 bits (293), Expect(2) = 1e-32
 Identities = 57/78 (73%), Positives = 67/78 (85%)
 Frame = -1

Query: 251  SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELHQLDVKTA 72
            S +   ++K RLVAKG++QKEGI+YNEVFSPVVKH SIR+LLA+V+ +NLEL QLDVKTA
Sbjct: 971  SXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTA 1030

Query: 71   FLHGNLNEEIYMTQPSGF 18
            FLHGNL EEIYM QP GF
Sbjct: 1031 FLHGNLEEEIYMKQPEGF 1048



 Score = 48.1 bits (113), Expect(2) = 1e-32
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 439  YALPVVEE---NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIRC 269
            +AL V EE     P +Y  A     +  W  +M ++M SL KN TWEL  LPEG K + C
Sbjct: 901  FALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDC 960


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  112 bits (281), Expect(2) = 2e-32
 Identities = 55/91 (60%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S  ++ R+K RLVAKGY+Q  GI++N+VFSPVVKH SIR LL++VA ++ EL
Sbjct: 774  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYEL 833

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q+DVKTAFLHG L E+IYM QP GF V GK
Sbjct: 834  EQMDVKTAFLHGELEEDIYMEQPEGFVVPGK 864



 Score = 52.4 bits (124), Expect(2) = 2e-32
 Identities = 30/61 (49%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439 YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
           YAL V EE      PSTY  A      N W  AM ++M SL KN +WEL  LP+ KK IR
Sbjct: 711 YALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIR 770

Query: 271 C 269
           C
Sbjct: 771 C 771


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  105 bits (261), Expect(2) = 2e-32
 Identities = 51/86 (59%), Positives = 65/86 (75%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            V+  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  +IRI+LA+ A + L L 
Sbjct: 837  VFKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLE 896

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFK 15
            QLDVKTAFLHG L EEIYM QP GF+
Sbjct: 897  QLDVKTAFLHGELEEEIYMLQPEGFE 922



 Score = 59.7 bits (143), Expect(2) = 2e-32
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -2

Query: 421 EENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           E+  PST+H A  GS A+ W  AM+E++ +LH+N TWEL  LP+G+KAI
Sbjct: 784 EDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAI 832


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  111 bits (277), Expect(2) = 2e-32
 Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S     RFK RLVAKG++Q  G++YN+VFSPVVKH SIR   ++VA ++LEL
Sbjct: 855  IFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLEL 914

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             QLDVKTAFLHG L EEIYM QP GF V GK
Sbjct: 915  EQLDVKTAFLHGELEEEIYMDQPEGFIVPGK 945



 Score = 53.5 bits (127), Expect(2) = 2e-32
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = -2

Query: 409 PSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIRC 269
           P+TY  A        W  AM+E+M SL KNGTWEL  LP+ KK +RC
Sbjct: 806 PATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRC 852


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  110 bits (276), Expect(2) = 3e-32
 Identities = 53/91 (58%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S  ++ R+K RLVAKGY+Q  GI++N+VFSP++KH SIR LL +VA ++ EL
Sbjct: 900  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYEL 959

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q+DVKTAFLHG L E+IYM QP GF V GK
Sbjct: 960  EQMDVKTAFLHGELEEDIYMEQPEGFVVLGK 990



 Score = 53.5 bits (127), Expect(2) = 3e-32
 Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439  YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
            YAL V EE      PSTY  A      N W  AM ++M SL KN TWE   LP+ KK IR
Sbjct: 837  YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIR 896

Query: 271  C 269
            C
Sbjct: 897  C 897


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  110 bits (276), Expect(2) = 3e-32
 Identities = 53/91 (58%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S  ++ R+K RLVAKGY+Q  GI++N+VFSP++KH SIR LL +VA ++ EL
Sbjct: 900  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYEL 959

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q+DVKTAFLHG L E+IYM QP GF V GK
Sbjct: 960  EQMDVKTAFLHGELEEDIYMEQPEGFVVLGK 990



 Score = 53.5 bits (127), Expect(2) = 3e-32
 Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439  YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
            YAL V EE      PSTY  A      N W  AM ++M SL KN TWE   LP+ KK IR
Sbjct: 837  YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIR 896

Query: 271  C 269
            C
Sbjct: 897  C 897


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  110 bits (275), Expect(2) = 3e-32
 Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S  ++ R+K RLVAKGY+Q  GI++N+VFSPVVKH SIR LL +VA ++ EL
Sbjct: 837  IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYEL 896

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             Q++VKTAFLHG L E+IYM QP GF V GK
Sbjct: 897  EQMNVKTAFLHGELEEDIYMEQPEGFVVPGK 927



 Score = 53.9 bits (128), Expect(2) = 3e-32
 Identities = 30/61 (49%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439 YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
           YAL V E+      PSTY  A      N W  AM ++M SL KN TWEL  LP+ KK IR
Sbjct: 774 YALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 833

Query: 271 C 269
           C
Sbjct: 834 C 834


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  109 bits (272), Expect(2) = 4e-32
 Identities = 53/90 (58%), Positives = 67/90 (74%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            VY  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  ++RI+LA+ A ++L L 
Sbjct: 841  VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLE 900

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            QLDVKTAFLHG L EEIYM QP GF   GK
Sbjct: 901  QLDVKTAFLHGELEEEIYMLQPEGFAETGK 930



 Score = 54.7 bits (130), Expect(2) = 4e-32
 Identities = 25/51 (49%), Positives = 33/51 (64%)
 Frame = -2

Query: 427 VVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           + E+  PST+H A   S    W  AM+E++ +LHKN TWEL  LP G+KAI
Sbjct: 786 LTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAI 836


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  110 bits (274), Expect(2) = 6e-32
 Identities = 55/91 (60%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272  VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
            ++ +K+G S     RFKVRLVAKG++Q  G++YN+VFSPVVKH SIR   ++V  ++LEL
Sbjct: 855  IFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLEL 914

Query: 95   HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
             QLDVKT FLHG L EEIYM QP GF V GK
Sbjct: 915  EQLDVKTTFLHGELEEEIYMDQPEGFIVPGK 945



 Score = 53.1 bits (126), Expect(2) = 6e-32
 Identities = 26/57 (45%), Positives = 32/57 (56%)
 Frame = -2

Query: 439 YALPVVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIRC 269
           YA  V     P+TY  A        W  A++E+M SL KNGTWEL  LP+ KK +RC
Sbjct: 796 YAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRC 852


>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
          Length = 621

 Score =  107 bits (267), Expect(2) = 8e-32
 Identities = 52/83 (62%), Positives = 65/83 (78%)
 Frame = -1

Query: 251 SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELHQLDVKTA 72
           S  ++  +K RLVAKGY+Q  GI++N+VFSPVVKH SIR LL++VA ++ EL Q+DVKTA
Sbjct: 259 SPSDEAMYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTA 318

Query: 71  FLHGNLNEEIYMTQPSGFKVAGK 3
           FLHG L E+IYM QP GF V GK
Sbjct: 319 FLHGELEEDIYMEQPEGFVVPGK 341



 Score = 55.5 bits (132), Expect(2) = 8e-32
 Identities = 31/61 (50%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439 YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
           YAL V EE      PSTY  A      N W  AM ++M SL KN TWEL  LP+ KK IR
Sbjct: 188 YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 247

Query: 271 C 269
           C
Sbjct: 248 C 248


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 983

 Score =  110 bits (274), Expect(2) = 1e-31
 Identities = 53/91 (58%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
 Frame = -1

Query: 272 VYTKKQG-SQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLEL 96
           ++ +K+G S  ++ R+K RLVAKGY+Q   I++N+VFSP+VKH SIR LL++VA ++ EL
Sbjct: 607 IFKRKEGMSPSDEARYKARLVAKGYSQIPSIDFNDVFSPIVKHSSIRTLLSIVAMHDYEL 666

Query: 95  HQLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            Q+DVKTAFLHG L E+IYM QP GF V GK
Sbjct: 667 EQMDVKTAFLHGELEEDIYMEQPEGFVVPGK 697



 Score = 52.4 bits (124), Expect(2) = 1e-31
 Identities = 29/61 (47%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -2

Query: 439 YALPVVEE----NVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAIR 272
           YAL V EE      PS Y  A      N W   M ++M SL KN TWEL  LP+ KK+IR
Sbjct: 544 YALSVAEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIR 603

Query: 271 C 269
           C
Sbjct: 604 C 604


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  109 bits (272), Expect(2) = 2e-31
 Identities = 53/90 (58%), Positives = 67/90 (74%)
 Frame = -1

Query: 272  VYTKKQGSQENDVRFKVRLVAKGYAQKEGINYNEVFSPVVKHFSIRILLALVA*YNLELH 93
            VY  K+   +   R++ RLV KGYAQKEGI++NE+FSPVV+  ++RI+LA+ A ++L L 
Sbjct: 841  VYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLE 900

Query: 92   QLDVKTAFLHGNLNEEIYMTQPSGFKVAGK 3
            QLDVKTAFLHG L EEIYM QP GF   GK
Sbjct: 901  QLDVKTAFLHGELEEEIYMLQPEGFAETGK 930



 Score = 52.4 bits (124), Expect(2) = 2e-31
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = -2

Query: 427 VVEENVPSTYHRAAYGSKANSWEEAMKEDMFSLHKNGTWELF*LPEGKKAI 275
           + E+  PST+H A        W  AM+E++ +LHKN TWEL  LP G+KAI
Sbjct: 786 LTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAI 836