BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00022584
         (2085 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   818   0.0  
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   810   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   809   0.0  
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   791   0.0  
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   791   0.0  
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   791   0.0  
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   788   0.0  
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   785   0.0  
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   774   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   771   0.0  
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   770   0.0  
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   765   0.0  
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The...   761   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   760   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   759   0.0  
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   759   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         758   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   757   0.0  
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob...   757   0.0  
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...   757   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  818 bits (2113), Expect = 0.0
 Identities = 416/642 (64%), Positives = 493/642 (76%), Gaps = 19/642 (2%)
 Frame = -2

Query: 1871 MWRNVAKHVASSRNLTRFSQNSIIQK-----------KTRSFELKIQSSFDFSKMGIRN- 1728
            MWRN+AKH A +R L   SQ+S               K R+ E +   +      G+R  
Sbjct: 1    MWRNLAKH-AYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59

Query: 1727 GVLLSQEDQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDEIQGLL 1569
            GVL  Q+D++GR  F   + P++F       KG+AS AEA++S   EED+S VDE+Q L+
Sbjct: 60   GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIAS---EEDMSGVDEVQELV 116

Query: 1568 EKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMC 1389
            E+++K DK       +KQ  L+GG+  GK+++LR+RQ+K+ETEAW++AA+EY+ELL DMC
Sbjct: 117  EEVNKGDKL------EKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMC 170

Query: 1388 KQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMH 1209
            +QKLAPNLPY+KSLFLGWF P RD I  EQ+  ++GKNR  YA YFDHLPADMMAVITMH
Sbjct: 171  EQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMH 230

Query: 1208 KLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVA 1029
            KLMGLLMT + +G  R+VQA+  IGEAIE EVRI  F++K++  +          S+ V 
Sbjct: 231  KLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVT 289

Query: 1028 KEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPP 849
            KE+EKL                      QDD KPWGQDA  KVG RLIELL+ETAYIQPP
Sbjct: 290  KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPP 349

Query: 848  VDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPM 669
             DQL DGPPDIRPAF H+LK V K+T K  RR+GVIECDPLVR+GLEKTARH+VIPYMPM
Sbjct: 350  ADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPM 409

Query: 668  LVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRV 489
            LVPP+NWT YDKGA+LFLPS VMR HG+R QREAIKRAPRK LE  FEAL+TLGNTKWR+
Sbjct: 410  LVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRI 469

Query: 488  NKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHS 309
            NKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDE EIR WKWKV+++KKENSERHS
Sbjct: 470  NKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHS 529

Query: 308  KRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPL 129
            +RCD+ELKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPL
Sbjct: 530  QRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 589

Query: 128  GKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            GKSGL+WLKIH+AN+YAGGVDKLSY+GR+AFTENHL+DIFDS
Sbjct: 590  GKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDS 631


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  810 bits (2093), Expect = 0.0
 Identities = 418/685 (61%), Positives = 495/685 (72%), Gaps = 20/685 (2%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFDLFHFDRQNHPQPYTQFCWSKISVDMWRNVAKHVASSR----- 1833
            MS S+T +   N+   F  FH     H  P      S IS  +WRN AK   S +     
Sbjct: 1    MSRSQTPLSPANISKNFT-FHSPLIFHKNP------SMISTTVWRNFAKQAISRKQRFHI 53

Query: 1832 ---------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN-GVLLSQEDQMGRRNF 1683
                     +L    Q S+     + FEL   SS  FS++G R  G + S ED M + +F
Sbjct: 54   NSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSF 113

Query: 1682 RYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQK 1518
               RNPI F     KG+ASVAEAVSSTD EE+VSVVDE+Q LL++MS E+K+  +  Q+ 
Sbjct: 114  WSVRNPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRT 173

Query: 1517 QQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLG 1338
            +QN   GMG GKYH+L++RQ+KIETEAW++AA+EY+EL+ DMC+QKLAPNLPYMKSLFLG
Sbjct: 174  RQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLG 233

Query: 1337 WFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRL 1158
            WF P R++I  EQ+  R+GKN+  YA Y D LPADMM+VITMHKLMGLLMT  +HG  R+
Sbjct: 234  WFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRV 293

Query: 1157 VQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXX 978
            V A+  IGEAIEQEVRI+ FL+ +R             SDA  KE+EKL           
Sbjct: 294  VAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGE-SDAAKKEREKLNKKVTNLMKKQ 352

Query: 977  XXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRH 798
                        D  K W  +A+AKVG RLIELL +TA+IQPP DQLADGPPDIRPAF H
Sbjct: 353  KLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVH 412

Query: 797  SLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLF 618
            + + V KD    +RR+GVIECDPLV +GLEKTARH+VIPYMPMLVPP+NWT YDKG + F
Sbjct: 413  TFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFF 472

Query: 617  LPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGR 438
            LPS VMR HG+R QREAIKR PR+QLE VF+ALD LGNT+WRVNKRV  V+ +IWA+GG 
Sbjct: 473  LPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGH 532

Query: 437  LADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKD 258
            LADLVDR DVPLP +PDTEDET ++ WKWKVK++KKEN ERHS+RCD ELKLAVA KMKD
Sbjct: 533  LADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVARKMKD 592

Query: 257  EDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYA 78
            E+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGILEF EGRPLGKSGL WLKIH+ANLYA
Sbjct: 593  EEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYA 652

Query: 77   GGVDKLSYDGRIAFTENHLDDIFDS 3
            GGVDKLS +GRIAFTENHLDDIFDS
Sbjct: 653  GGVDKLSLEGRIAFTENHLDDIFDS 677


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  809 bits (2090), Expect = 0.0
 Identities = 429/692 (61%), Positives = 504/692 (72%), Gaps = 27/692 (3%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFDLF-HFDRQNHPQPYTQFCWSKISVDMWRNVAKHVA------- 1842
            MSS +T I + NL    DL   F++  + +P       K    MWRN+AK          
Sbjct: 1    MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPL----KKPTVMWRNIAKRAIPRAPRKC 56

Query: 1841 ---SSRNLTR------FSQNSIIQK--KTRSFELKIQSSFDFSKMGIRN-GVLLSQEDQM 1698
                S+ L+R      FSQ+ I  +  K  +FE    SS  FS+MG R  G + S+ED +
Sbjct: 57   VYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAV 116

Query: 1697 GRRNFRYFRNPISFKGF-----ASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFE 1533
            GR +F   RN + F GF     ASVAEAVSSTD EEDVS  DEIQ LL +M KE+K+   
Sbjct: 117  GRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVN 176

Query: 1532 LGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMK 1353
              ++++  +  GM  G+Y  LR+RQVKIETEAW+ AA+EYKELL DMC+QKLAPNLPYMK
Sbjct: 177  FKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMK 236

Query: 1352 SLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDH 1173
            SLFLGWF P RD+I  EQE  R GKN+  YA YFD LPADMM+VITMHKL+GLLMT  +H
Sbjct: 237  SLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEH 296

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKS-RSNTXXXXXXXXXESDAVAKEKEKLXXXXX 996
            G  R+VQA+  IG+AIEQEVRI+NFL+K+ R              D V  E+EKL     
Sbjct: 297  GSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVT 356

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVD-QLADGPPD 819
                              D+ KPWG +A+AKVG RLIELLM+TAYIQPPVD QLAD PPD
Sbjct: 357  NLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPD 416

Query: 818  IRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRY 639
            IRPAF H+ K V ++  K  RRFGVIECDPLV++GLE+TARH+VIPY+PMLVPP+ WT Y
Sbjct: 417  IRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGY 476

Query: 638  DKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHK 459
            DKGAHLFLPS VMRTHG+R QREA+KRAPR QLE VFEAL+TLGNTKWR+NKR+F V+ +
Sbjct: 477  DKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDR 536

Query: 458  IWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLA 279
            IWA GG LADLVDR DVPLP +PDTEDE ++R WKWKVK++KK NSERHS+RCD+ELKLA
Sbjct: 537  IWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLA 596

Query: 278  VAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKI 99
            VA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGL WLKI
Sbjct: 597  VARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKI 656

Query: 98   HMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            H+ANL+AGGVDKLS++GRI FTENHLDDIFDS
Sbjct: 657  HLANLFAGGVDKLSHEGRITFTENHLDDIFDS 688


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  791 bits (2042), Expect = 0.0
 Identities = 409/685 (59%), Positives = 505/685 (73%), Gaps = 20/685 (2%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 1839
            MS+++T  P     NKFD      ++ +  N+ +P  +F    KIS  MWRNVAK   S 
Sbjct: 1    MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 1838 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 1683
                    + +    SQ+SI+++K +   L +           R G +L+ ED MGR +F
Sbjct: 59   HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118

Query: 1682 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 1509
               +N   +  +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++  E G  + + 
Sbjct: 119  GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178

Query: 1508 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 1332
             V  GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179  RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238

Query: 1331 GPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQ 1152
             P RD+I  EQE+ R  K++  YA YFD LPADMMAVITMHKLMGLLMT  +HG  R+VQ
Sbjct: 239  EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298

Query: 1151 ASLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXX 978
            A+  IG+AIEQEVRI+ FL+K++  + T         ES+ V  E+EKL           
Sbjct: 299  AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358

Query: 977  XXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRH 798
                       QDD KPWGQDA+AKVG R+IELL +TAYIQ P DQL D PPDI PAF H
Sbjct: 359  KLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTH 418

Query: 797  SLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLF 618
            +L+ V+K+T   ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP+ WT YDKGAH F
Sbjct: 419  TLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478

Query: 617  LPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGR 438
            LPS VMRTHG++ QR+ +KR P+KQLE VFEALDTLGNTKWRVN RV  V+ +IW+ GGR
Sbjct: 479  LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538

Query: 437  LADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKD 258
            LADLVDR DVPLP +P+TEDE ++R W+WKV+ +KKEN ERHS+RCD+ELKL+VA KMKD
Sbjct: 539  LADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598

Query: 257  EDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYA 78
            E+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIH+ANLYA
Sbjct: 599  EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658

Query: 77   GGVDKLSYDGRIAFTENHLDDIFDS 3
            GGVDKLS++GR+AFTENHLDDIFDS
Sbjct: 659  GGVDKLSHEGRLAFTENHLDDIFDS 683


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  791 bits (2042), Expect = 0.0
 Identities = 409/685 (59%), Positives = 505/685 (73%), Gaps = 20/685 (2%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 1839
            MS+++T  P     NKFD      ++ +  N+ +P  +F    KIS  MWRNVAK   S 
Sbjct: 1    MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 1838 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 1683
                    + +    SQ+SI+++K +   L +           R G +L+ ED MGR +F
Sbjct: 59   HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118

Query: 1682 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 1509
               +N   +  +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++  E G  + + 
Sbjct: 119  GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178

Query: 1508 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 1332
             V  GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179  RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238

Query: 1331 GPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQ 1152
             P RD+I  EQE+ R  K++  YA YFD LPADMMAVITMHKLMGLLMT  +HG  R+VQ
Sbjct: 239  EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298

Query: 1151 ASLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXX 978
            A+  IG+AIEQEVRI+ FL+K++  + T         ES+ V  E+EKL           
Sbjct: 299  AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358

Query: 977  XXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRH 798
                       QDD KPWGQDA+AKVG R+IELL +TAYIQ P DQL D PPDI PAF H
Sbjct: 359  KLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTH 418

Query: 797  SLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLF 618
            +L+ V+K+T   ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP+ WT YDKGAH F
Sbjct: 419  TLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478

Query: 617  LPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGR 438
            LPS VMRTHG++ QR+ +KR P+KQLE VFEALDTLGNTKWRVN RV  V+ +IW+ GGR
Sbjct: 479  LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538

Query: 437  LADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKD 258
            LADLVDR DVPLP +P+TEDE ++R W+WKV+ +KKEN ERHS+RCD+ELKL+VA KMKD
Sbjct: 539  LADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598

Query: 257  EDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYA 78
            E+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIH+ANLYA
Sbjct: 599  EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658

Query: 77   GGVDKLSYDGRIAFTENHLDDIFDS 3
            GGVDKLS++GR+AFTENHLDDIFDS
Sbjct: 659  GGVDKLSHEGRLAFTENHLDDIFDS 683


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  791 bits (2042), Expect = 0.0
 Identities = 409/685 (59%), Positives = 505/685 (73%), Gaps = 20/685 (2%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 1839
            MS+++T  P     NKFD      ++ +  N+ +P  +F    KIS  MWRNVAK   S 
Sbjct: 1    MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 1838 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 1683
                    + +    SQ+SI+++K +   L +           R G +L+ ED MGR +F
Sbjct: 59   HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118

Query: 1682 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 1509
               +N   +  +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++  E G  + + 
Sbjct: 119  GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178

Query: 1508 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 1332
             V  GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179  RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238

Query: 1331 GPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQ 1152
             P RD+I  EQE+ R  K++  YA YFD LPADMMAVITMHKLMGLLMT  +HG  R+VQ
Sbjct: 239  EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298

Query: 1151 ASLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXX 978
            A+  IG+AIEQEVRI+ FL+K++  + T         ES+ V  E+EKL           
Sbjct: 299  AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358

Query: 977  XXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRH 798
                       QDD KPWGQDA+AKVG R+IELL +TAYIQ P DQL D PPDI PAF H
Sbjct: 359  KLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTH 418

Query: 797  SLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLF 618
            +L+ V+K+T   ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP+ WT YDKGAH F
Sbjct: 419  TLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478

Query: 617  LPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGR 438
            LPS VMRTHG++ QR+ +KR P+KQLE VFEALDTLGNTKWRVN RV  V+ +IW+ GGR
Sbjct: 479  LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538

Query: 437  LADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKD 258
            LADLVDR DVPLP +P+TEDE ++R W+WKV+ +KKEN ERHS+RCD+ELKL+VA KMKD
Sbjct: 539  LADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598

Query: 257  EDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYA 78
            E+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIH+ANLYA
Sbjct: 599  EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658

Query: 77   GGVDKLSYDGRIAFTENHLDDIFDS 3
            GGVDKLS++GR+AFTENHLDDIFDS
Sbjct: 659  GGVDKLSHEGRLAFTENHLDDIFDS 683


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  788 bits (2036), Expect = 0.0
 Identities = 407/684 (59%), Positives = 504/684 (73%), Gaps = 19/684 (2%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 1839
            MS+++T  P     NKFD      ++ +  N+ +P  +F    KIS  MWRNVAK   S 
Sbjct: 1    MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 1838 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 1683
                    + +    SQ+SI+++K +   L +           R G +L+ ED MGR +F
Sbjct: 59   HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118

Query: 1682 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 1509
               +N   +  +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE +     G + ++ 
Sbjct: 119  GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEQQSG---GGRNRRR 175

Query: 1508 LVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFG 1329
            +  GMG GKY +L+ RQVKIETEAW++AA EY+ELL DMC+QKLAPNLPYMKSLFLGWF 
Sbjct: 176  VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFE 235

Query: 1328 PFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQA 1149
            P RD+I  EQE+ R  K++  YA YFD LPADMMAVITMHKLMGLLMT  +HG  R+VQA
Sbjct: 236  PLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 295

Query: 1148 SLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXX 975
            +  IG+AIEQEVRI+ FL+K++  + T         ES+ V  E+EKL            
Sbjct: 296  ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 355

Query: 974  XXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHS 795
                      QDD KPWGQDA+AKVG R+IELL +TAYIQ P DQLAD PPDI PAF H+
Sbjct: 356  LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHA 415

Query: 794  LKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFL 615
            L+ V+K+T   ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP+ WT YDKGAH FL
Sbjct: 416  LRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL 475

Query: 614  PSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRL 435
            PS VMRTHG++ QR+ +KR P+KQLE VFEALDTLGNTKWRVN RV  V+ +IW+ GGRL
Sbjct: 476  PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 535

Query: 434  ADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDE 255
            ADLVDR DVPLP +P+TEDE ++R W+WKV+ +KKEN ERHS+RCD+ELKL+VA KMKDE
Sbjct: 536  ADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 595

Query: 254  DGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAG 75
            +GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIH+ANLYAG
Sbjct: 596  EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 655

Query: 74   GVDKLSYDGRIAFTENHLDDIFDS 3
            GVDKLS++GR+AFTENHLDDIFDS
Sbjct: 656  GVDKLSHEGRLAFTENHLDDIFDS 679


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  785 bits (2028), Expect = 0.0
 Identities = 402/660 (60%), Positives = 492/660 (74%), Gaps = 37/660 (5%)
 Frame = -2

Query: 1871 MWRNVAKHVASSR-NLTR-------------FSQNSIIQKKTRSFELKIQSSFDFSKMGI 1734
            MWRN+AK VAS + NL+              FSQ S    K R FE +   +     MG 
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 1733 RN-GVLLSQEDQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDEIQ 1578
            R  G + SQ++++GR +      P          KG+ASVAEA++STD EED S  +EIQ
Sbjct: 61   RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120

Query: 1577 GLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLE 1398
             +LE + +E+    E   ++ + +V GMG GKY+LLRKRQ+K+ETEAW +AA+EY+ELL 
Sbjct: 121  EMLEDLIRENN-MVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLA 179

Query: 1397 DMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVI 1218
            DMC+QKLAPNLPY+KSLFLGWF P RD+I  +Q+  ++  +R ++A YFDHLPAD MAVI
Sbjct: 180  DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVI 239

Query: 1217 TMHKLMGLLMTSDDH-GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES 1041
            TMHKLMGLLMT++   G VR+VQA+  IGEAIE EVRI+ FL+K++            +S
Sbjct: 240  TMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADS 299

Query: 1040 --------------DAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAK 903
                          + + KE+E+L                      Q+DLKPWGQ+A  K
Sbjct: 300  VPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVK 359

Query: 902  VGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLV 723
            VGCRLI+LLM+TAYIQPPVDQ+ DGPPDIRPAF H+LK +T+DT KT+RR+GVIECDP+V
Sbjct: 360  VGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIV 419

Query: 722  RQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQ 543
            R+G+EKTARH+V+PYMPMLVPPINWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQ
Sbjct: 420  RKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQ 479

Query: 542  LESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIR 363
            LE VFEALDTLG+TKWRVNKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDE EIR
Sbjct: 480  LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 539

Query: 362  SWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNH 183
             WKWK+K  KKENSERHS+RCD+ELKLA + KMKDE+GF+YPHNLDFRGRAYPMHP+LNH
Sbjct: 540  KWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 599

Query: 182  LGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            LGSD+CRGILEF+EGR LGKSGL+WLKIH+ANLYAGGVDKLS+D R AFTENH+D+IFDS
Sbjct: 600  LGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDS 659


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  774 bits (1999), Expect = 0.0
 Identities = 397/642 (61%), Positives = 479/642 (74%), Gaps = 19/642 (2%)
 Frame = -2

Query: 1871 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 1731
            MWRN+ K ++S         S+N T     F Q+S+ +  T+ F   I  S     MG +
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISCSNIVMGFQ 93

Query: 1730 N-GVLLSQEDQMGRRNFRYFRNPISF---KGFASVAEAV--SSTDTEEDVSVVDEIQGLL 1569
            N G  L  ++ + R   +   N   F   K +ASVAEAV  SSTD EEDVSVVDE+Q LL
Sbjct: 94   NLGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELL 153

Query: 1568 EKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMC 1389
             ++ KE+KK F   ++KQ+ L  GMG  KY  L++RQVK+ETEAW+QAA+EYKELL DMC
Sbjct: 154  TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 213

Query: 1388 KQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMH 1209
            +QKLAPNLPY+KSLFLGWF P RD I  EQE   +GK++  YA+Y   LPADMMAVITMH
Sbjct: 214  EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMH 273

Query: 1208 KLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVA 1029
            KLMGLLMT  DHG  R+VQA+L IG+AIEQEVRI+NFL+K++              + V 
Sbjct: 274  KLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED-GEHVT 332

Query: 1028 KEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPP 849
            +E+EKL                      QDD KPWGQDA+AKVG RLIELL++TAYIQPP
Sbjct: 333  QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPP 392

Query: 848  VDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPM 669
             +QLA  PPDIRPAF HS++ V K+T   +RR+G+I+CD LV +GLE+TARH+VIPYMPM
Sbjct: 393  ANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPM 452

Query: 668  LVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRV 489
            LVPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEALDTLG+TKWR+
Sbjct: 453  LVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRI 512

Query: 488  NKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHS 309
            NKRV  VI +IWA GGRLADLVDR+D PLP +PDTEDE     W+WKVK++KKEN ERHS
Sbjct: 513  NKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHS 572

Query: 308  KRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPL 129
            +RCD+ELKLAVA KMKDE+GFFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+L FAEGRPL
Sbjct: 573  QRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPL 632

Query: 128  GKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            G+SGL+WLKIH+ANL+AGGV+KLS +GRIAFTENH+DDIFDS
Sbjct: 633  GESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDS 674


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  771 bits (1992), Expect = 0.0
 Identities = 395/641 (61%), Positives = 477/641 (74%), Gaps = 18/641 (2%)
 Frame = -2

Query: 1871 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 1731
            MWRN+ K ++S         S+N T     F Q+SI +  T+ F   I  S     MG +
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISCSNIVMGFQ 93

Query: 1730 N-GVLLSQEDQMGRRNFR--YFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLE 1566
            N G  L  ++ + R   +     N    K +ASVAEAV  SSTD EEDVSVVDE+  LL 
Sbjct: 94   NLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153

Query: 1565 KMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 1386
            ++ KE+KK F   ++KQ+ L  GMG  KY  L++RQVK+ETEAW+QAA+EYKELL DMC+
Sbjct: 154  ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213

Query: 1385 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHK 1206
            QKLAPNLPY+KSLFLGWF P RD I  EQE   +GK++  YA+YF  LPADMMAVITMHK
Sbjct: 214  QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHK 273

Query: 1205 LMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAK 1026
            LMGLLMT  DHG  R+VQA+L IG+AIEQEVRI+NFL+K++              + V +
Sbjct: 274  LMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED-GEHVTQ 332

Query: 1025 EKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPV 846
            E+EKL                      QDD KPWGQDA+AKVG RLI+LL++TAYIQPP 
Sbjct: 333  EQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPA 392

Query: 845  DQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPML 666
            +QLA  PPDIRPAF HS++ V K+T   +RR+G+I+CD LV +GLE+TARH+VIPYMPML
Sbjct: 393  NQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPML 452

Query: 665  VPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVN 486
            VPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEALDTLGNTKWR+N
Sbjct: 453  VPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRIN 512

Query: 485  KRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSK 306
            KRV  V+ +IWA GGRLADLVDR+D PLP +PDTEDE     W+WKVK++KKEN ERHS+
Sbjct: 513  KRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQ 572

Query: 305  RCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG 126
            RCD+ELKLAVA KMKDE+ FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG
Sbjct: 573  RCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLG 632

Query: 125  KSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +SGL+WLKIH+ANL+AGGV+KLS +GRI FTENH+DDIFDS
Sbjct: 633  ESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDS 673


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  770 bits (1989), Expect = 0.0
 Identities = 394/641 (61%), Positives = 477/641 (74%), Gaps = 18/641 (2%)
 Frame = -2

Query: 1871 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 1731
            MWRN+ K ++S         S+N T     F Q+SI +  T+ F   I  S     MG +
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISCSNIVMGFQ 93

Query: 1730 N-GVLLSQEDQMGRRNFR--YFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLE 1566
            N G  L  ++ + R   +     N    K +ASVAEAV  SSTD EEDVSVVDE+  LL 
Sbjct: 94   NLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153

Query: 1565 KMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 1386
            ++ KE+KK F   ++KQ+ L  GMG  KY  L++RQVK+ETEAW+QAA+EYKELL DMC+
Sbjct: 154  ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213

Query: 1385 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHK 1206
            QKLAPNLPY+KSLFLGWF P RD I  EQE   +GK++  YA+YF  LPADMMAVITMHK
Sbjct: 214  QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHK 273

Query: 1205 LMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAK 1026
            LMGLLMT  DHG  R+VQA+L IG+AIEQEVRI+NFL+K++              + V +
Sbjct: 274  LMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED-GEHVTQ 332

Query: 1025 EKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPV 846
            E+EKL                      QDD KPWGQDA+AKVG RLI+LL++TAYIQPP 
Sbjct: 333  EQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPA 392

Query: 845  DQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPML 666
            +QLA  PPDI PAF HS++ V K+T   +RR+G+I+CD LV +GLE+TARH+VIPYMPML
Sbjct: 393  NQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPML 452

Query: 665  VPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVN 486
            VPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEALDTLGNTKWR+N
Sbjct: 453  VPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRIN 512

Query: 485  KRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSK 306
            KRV  V+ +IWA GGRLADLVDR+D PLP +PDTEDE  +  W+WKVK++KKEN ERHS+
Sbjct: 513  KRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQ 572

Query: 305  RCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG 126
            RCD+ELKLAVA KMKDE+ FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG
Sbjct: 573  RCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLG 632

Query: 125  KSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +SGL+WLKIH+ANL+AGGV+KLS +GRI FTENH+DDIFDS
Sbjct: 633  ESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDS 673


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  765 bits (1976), Expect = 0.0
 Identities = 389/647 (60%), Positives = 481/647 (74%), Gaps = 24/647 (3%)
 Frame = -2

Query: 1871 MWRNVAKHVASSRNLTRFSQN---------------SIIQKKTRSFELKIQSSFDFSKMG 1737
            MWRN++K  +  RN   FS++               SI  +     +L+   +   S++G
Sbjct: 1    MWRNLSKQ-SYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELG 59

Query: 1736 IRNGVLLSQEDQ--------MGRRNFRYFRNPISFKGFASVAEAVSSTDTEEDVSVVDEI 1581
             R  ++  +  +        +    FR+F    S +G+A+ AEA+ ST  EE    VDE+
Sbjct: 60   FRRALVFWRPPREASCPNYAISSHTFRFFG---STRGYAAAAEALVSTSEEE----VDEL 112

Query: 1580 QGLLEKMSKE-DKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKEL 1404
            Q L+E+++KE + K  +  +QKQ  LVGGMG GKY+ LR+RQ+KIETEAW+ AA+EY+EL
Sbjct: 113  QELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQEL 172

Query: 1403 LEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMA 1224
            LEDMC+QKLAPNLPY+KSLFLGWF P RD+I  EQ+  + GKNRG YA YFD LPA+MMA
Sbjct: 173  LEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMA 232

Query: 1223 VITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXE 1044
            VITMHKLMGLLMT   +G  R+VQA+  IGEAIE EVRI+ FL   +             
Sbjct: 233  VITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGP 292

Query: 1043 SDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETA 864
             D  AKE+++L                      QDDLKPWGQDAQ KVGCRLI++L +TA
Sbjct: 293  -DPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTA 351

Query: 863  YIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVI 684
            YIQPPVDQ  DG PDIRPAF H+LK V  +TLK +RR+GVIECDPLVR+G+EKTARH+VI
Sbjct: 352  YIQPPVDQRDDGAPDIRPAFVHTLKCV--ETLKGSRRYGVIECDPLVRKGMEKTARHMVI 409

Query: 683  PYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGN 504
            PYMPMLVPP+NWT Y++GA+LFLPS +MRTHG++ QREA+KR P+++LE +F+AL+TLGN
Sbjct: 410  PYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGN 469

Query: 503  TKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKEN 324
            TKWRVNKR+  V+ +IWA GGRLADLVDRED+PLP +PDTEDE EI+ WKWKVK +KK N
Sbjct: 470  TKWRVNKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVN 529

Query: 323  SERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFA 144
            SERHS+RCD+ELKLAVA K+K+E+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFA
Sbjct: 530  SERHSQRCDIELKLAVARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 589

Query: 143  EGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            EGRPLGKSGLQWLK+H+ANLY GGVDK SYDGRI+FTENH++DIFDS
Sbjct: 590  EGRPLGKSGLQWLKVHLANLYGGGVDKFSYDGRISFTENHMEDIFDS 636


>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  761 bits (1966), Expect = 0.0
 Identities = 405/691 (58%), Positives = 490/691 (70%), Gaps = 26/691 (3%)
 Frame = -2

Query: 1997 MSSSRTLIPTRNLCNKFDLF-HFDRQNHPQPYTQFCWSKISVDMWRNVAKHVASSR---- 1833
            MS   T + + NL +KFD F   D +N    Y      KIS+ MWRN+AKH  S R    
Sbjct: 1    MSIIETPLISSNLLDKFDHFVPLDNRNPSILYQNP--PKISIVMWRNIAKHAISRRTHSF 58

Query: 1832 -------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKM----GIRNGVLLSQEDQMGRRN 1686
                   +    SQ+SI  +K++   LK  S    S+     G R G +L+  + +G+++
Sbjct: 59   QCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSRFLDMGGRRIGEVLTNVEYIGKQS 118

Query: 1685 FRYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQ 1521
            F   RN I       +G+ SVAEAVSSTD EEDVSVV+EI+ LL++M KE ++     ++
Sbjct: 119  FGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKELLDEMKKEQRRETGNRRR 178

Query: 1520 KQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFL 1341
            + Q +  GMG  KY  LR+RQVKIETEAW+QAA+EY+ELL DMC+ KLAPNLPY+KSLFL
Sbjct: 179  RCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPYIKSLFL 238

Query: 1340 GWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVR 1161
            GWF P RD+I  EQE +R GK R  YA Y D LPADM AVITMHKLMGLLMT  +HG  R
Sbjct: 239  GWFEPLRDAIIKEQELYRLGKLRAGYAGYLDQLPADMTAVITMHKLMGLLMTGGEHGCAR 298

Query: 1160 LVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES-DAVAKEKEKLXXXXXXXXX 984
            +VQA+  IG+AIEQEVRI+ FL+K++            +  +A  KE+EKL         
Sbjct: 299  VVQAACLIGDAIEQEVRIHKFLEKTKKKRVDKKNEDEGDKPNAEIKEQEKLRKKVTDLIK 358

Query: 983  XXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAF 804
                         QDD KPWGQDA+AKVG  LIELLM+TAYIQPP DQLAD PPD+RPAF
Sbjct: 359  KQKLPAVRQIVKGQDDTKPWGQDAKAKVGSHLIELLMQTAYIQPPADQLADCPPDVRPAF 418

Query: 803  RHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVP----PINWTRYD 636
             HSL+ V K+  KT RR+GVIEC+PLVR+GLE+T+      +   L       + WT YD
Sbjct: 419  VHSLRTVVKENKKTGRRYGVIECNPLVRKGLERTSMDPCKAHGDSLYANVGVKVKWTGYD 478

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            +GA+LF+PS +MRTHG + QREA+KR PRKQLE VFEALDTLG TKWRVNKRV  V+ +I
Sbjct: 479  RGAYLFIPSYIMRTHGVKQQREAVKRTPRKQLEPVFEALDTLGCTKWRVNKRVLNVVDRI 538

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            W +GGRLADLVDR+DVPLP +PD+EDE  +R WKWKV+++KKEN ERHS RCDVELKLAV
Sbjct: 539  WTSGGRLADLVDRKDVPLPEKPDSEDEAVLRKWKWKVRSVKKENRERHSLRCDVELKLAV 598

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF EGRPLGKSGL+WLKIH
Sbjct: 599  ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFGEGRPLGKSGLRWLKIH 658

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLYAGGVDKLS+ GR+AF ENHLDDIFDS
Sbjct: 659  LANLYAGGVDKLSHGGRLAFAENHLDDIFDS 689


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  760 bits (1962), Expect = 0.0
 Identities = 380/609 (62%), Positives = 462/609 (75%), Gaps = 4/609 (0%)
 Frame = -2

Query: 1817 SQNSI---IQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNFRYFRNPISF-KG 1650
            SQNSI   I +K R  E   + S     +G+    L S      R   +     + F + 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1649 FASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLL 1470
            + S AEA++ST  E+    +DEIQ L+E+M+KE++      Q KQ   +GGMG GKY+LL
Sbjct: 114  YGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLL 169

Query: 1469 RKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQF 1290
            R+RQ+K+ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I  EQ+  
Sbjct: 170  RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229

Query: 1289 RRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVR 1110
              GKNRG YA +FD LPA+MMAVITMHKLMGLLMT    G  R+VQA+  IGEAIE E R
Sbjct: 230  DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 289

Query: 1109 IYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLK 930
            I+ FL+K++ +            D + KE+E+L                      QDD K
Sbjct: 290  IHRFLEKTKKSNALSGDLEDTPGD-IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEK 348

Query: 929  PWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRF 750
            PWGQD   KVGCRLI++LMETAYIQPP DQL D PPDIRPAF H+LK V  +T+K +RR+
Sbjct: 349  PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRY 406

Query: 749  GVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQRE 570
            GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W  YDKGA+LFLPS +MRTHG++ QRE
Sbjct: 407  GVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQRE 466

Query: 569  AIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQP 390
            A+KR P+KQLE VF+ALDTLGNTKWR+N++V G++ +IWA+GGRLADLVDREDVPLP +P
Sbjct: 467  AVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEP 526

Query: 389  DTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRA 210
            D EDE +IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRA
Sbjct: 527  DAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRA 586

Query: 209  YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTE 30
            YPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH+AN+Y GGVDKLSY+GR+AF+E
Sbjct: 587  YPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 646

Query: 29   NHLDDIFDS 3
            NH++DIFDS
Sbjct: 647  NHVEDIFDS 655


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  759 bits (1959), Expect = 0.0
 Identities = 379/609 (62%), Positives = 462/609 (75%), Gaps = 4/609 (0%)
 Frame = -2

Query: 1817 SQNSI---IQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNFRYFRNPISF-KG 1650
            SQNSI   I +K R  E   + S     +G+    L S      R   +     + F + 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1649 FASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLL 1470
            + S AEA++ST  E+    +DEIQ L+E+M+KE++      Q KQ   +GGMG GKY+LL
Sbjct: 114  YGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLL 169

Query: 1469 RKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQF 1290
            R+RQ+K+ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I  EQ+  
Sbjct: 170  RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229

Query: 1289 RRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVR 1110
              GKNRG YA +FD LPA+MMAVITMHKLMGLLMT    G  R+VQA+  IGEAIE E R
Sbjct: 230  DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 289

Query: 1109 IYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLK 930
            I+ FL+K++ +            D + KE+E++                      QDD K
Sbjct: 290  IHRFLEKTKKSNALSGDLEDTPGD-IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEK 348

Query: 929  PWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRF 750
            PWGQD   KVGCRLI++LMETAYIQPP DQL D PPDIRPAF H+LK V  +T+K +RR+
Sbjct: 349  PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRY 406

Query: 749  GVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQRE 570
            GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W  YDKGA+LFLPS +MRTHG++ QRE
Sbjct: 407  GVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQRE 466

Query: 569  AIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQP 390
            A+KR P+KQLE VF+ALDTLGNTKWR+N++V G++ +IWA+GGRLADLVDREDVPLP +P
Sbjct: 467  AVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEP 526

Query: 389  DTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRA 210
            D EDE +IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRA
Sbjct: 527  DAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRA 586

Query: 209  YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTE 30
            YPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH+AN+Y GGVDKLSY+GR+AF+E
Sbjct: 587  YPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 646

Query: 29   NHLDDIFDS 3
            NH++DIFDS
Sbjct: 647  NHVEDIFDS 655


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score =  759 bits (1959), Expect = 0.0
 Identities = 393/650 (60%), Positives = 476/650 (73%), Gaps = 27/650 (4%)
 Frame = -2

Query: 1871 MWRNVAKHVA-SSRNL------TRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN-GVLL 1716
            MWRN A+  + SS+ L      T+ +Q+  I +K R  E +      +S +G R    L 
Sbjct: 1    MWRNFARRTSLSSKKLNFSSDCTQLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISGLS 60

Query: 1715 SQEDQMGRRNFRYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKE 1551
            SQ  +  + +F    NP  F     KG+A+ A  V ++  E D S  DE+Q  +E+++K 
Sbjct: 61   SQNHEFIKPSFTNLTNPFGFSHFLFKGYATAAAQVIASTDESDFSGCDELQEQIEEINKH 120

Query: 1550 DKKF---FELGQQKQQN--LVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 1386
             KK    F   QQ+QQ    + GMG GKY +L+KRQ+K+ETEAW++AAREY+ELL DMC+
Sbjct: 121  HKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCE 180

Query: 1385 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHK 1206
            QKLAPNLPY+KSLFLGWF P RD+I  EQE  R   N+ ++  YFD LPADMMAVITMHK
Sbjct: 181  QKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHK 240

Query: 1205 LMGLLMTSDD-HGMVRLVQASLEIGEAIEQEVRIYNFL------KKSRSNTXXXXXXXXX 1047
            LMGLLMT++  +G VR+VQA+  +GEAIE E RI+ FL      KKS  N          
Sbjct: 241  LMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPV 300

Query: 1046 ESDA--VAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLM 873
             SDA  +AKE+EKL                       DD  PWGQ+AQ KVGCRLI+LL+
Sbjct: 301  TSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLI 360

Query: 872  ETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARH 693
            ETAYIQPPV+QL DG PDIRPAF H+LK V KDT KT+RR+GVIECDP+VR GLEK+ARH
Sbjct: 361  ETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARH 420

Query: 692  VVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDT 513
            +VIPYMPMLVPP+NW  YD+GA+LFLPS VMRTHG++ QR A+KR P KQLE V+EAL+T
Sbjct: 421  MVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNT 480

Query: 512  LGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLK 333
            LGNTKWR+NK++  V+ +IWA GGRLA L+DRED PLP + +TEDE EI+ WKWKVK +K
Sbjct: 481  LGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVK 540

Query: 332  KENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGIL 153
            KENSERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHPHLNHLGSD+CRGIL
Sbjct: 541  KENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGIL 600

Query: 152  EFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            EFAEGRPLGKSG +WLKIH+AN+YAGGVDKLSY+GR+AFTENHLD IFDS
Sbjct: 601  EFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDS 650


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  758 bits (1957), Expect = 0.0
 Identities = 388/662 (58%), Positives = 470/662 (70%), Gaps = 39/662 (5%)
 Frame = -2

Query: 1871 MWRNVAKHVASSR-------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLS 1713
            MWR ++KH  S +        L  FSQ S    KTR  +   + S     +G+    + S
Sbjct: 1    MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60

Query: 1712 QEDQMGRR---------------------------NFRYFRNPIS-----FKGFASVAEA 1629
            +  +  R                            +FR      S      + + S AEA
Sbjct: 61   RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120

Query: 1628 VSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKI 1449
            + ST  E+    +DEIQ L+E+M KE++      Q KQ   +GGMG GKY+ LR+RQ+K+
Sbjct: 121  IVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKV 176

Query: 1448 ETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRG 1269
            ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I  EQ+    GKNRG
Sbjct: 177  ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236

Query: 1268 NYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKK 1089
             YA +FD LPA+MMAVITMHKLMGLLMT    G  R+VQA+  IGEAIE E RI+ FL+K
Sbjct: 237  AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296

Query: 1088 SRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQ 909
            ++ +            D + KE+E+L                      QDD KPWGQD  
Sbjct: 297  TKKSNALSGDLEETPGDMM-KERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNL 355

Query: 908  AKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDP 729
             KVGCRLI++LMETAYIQPP DQL DGPPDIRPAF H+LK V  +T+K +RR+GVI+CDP
Sbjct: 356  VKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDP 413

Query: 728  LVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPR 549
            LVR+GL+KTARH+VIPYMPMLVPP +W  YDKG +LFLPS +MRTHG++ QREA+KR P+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 548  KQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETE 369
            KQLE VF+ALDTLGNTKWRVN++V G++++IWA+GGRLADLVDREDVPLP  PDTEDE E
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAE 533

Query: 368  IRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHL 189
            IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+L
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 593

Query: 188  NHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIF 9
            NHLGSDLCRGILEFAEGRPLG SGL+WLKIH+AN+Y GGVDKLSY+GR+AF+ENHL+DIF
Sbjct: 594  NHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIF 653

Query: 8    DS 3
            DS
Sbjct: 654  DS 655


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  757 bits (1955), Expect = 0.0
 Identities = 388/662 (58%), Positives = 469/662 (70%), Gaps = 39/662 (5%)
 Frame = -2

Query: 1871 MWRNVAKHVASSR-------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLS 1713
            MWR ++KH  S +        L  FSQ S    KTR  +   + S     +G+    + S
Sbjct: 1    MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60

Query: 1712 QEDQMGRR---------------------------NFRYFRNPIS-----FKGFASVAEA 1629
            +  +  R                            +FR      S      + + S AEA
Sbjct: 61   RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120

Query: 1628 VSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKI 1449
            + ST  E+    +DEIQ L+E+M KE++      Q KQ   +GGMG GKY+ LR+RQ+K+
Sbjct: 121  IVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKV 176

Query: 1448 ETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRG 1269
            ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I  EQ+    GKNRG
Sbjct: 177  ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236

Query: 1268 NYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKK 1089
             YA +FD LPA+MMAVITMHKLMGLLMT    G  R+VQA+  IGEAIE E RI+ FL+K
Sbjct: 237  AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296

Query: 1088 SRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQ 909
            ++ +            D + KE+E+L                      QDD KPWGQD  
Sbjct: 297  TKKSNALSGDLEETPGDMM-KERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNL 355

Query: 908  AKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDP 729
             KVGCRLI++LMETAYIQPP DQL DGPPDIRPAF H+LK V  +T+K +RR+GVI+CDP
Sbjct: 356  VKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDP 413

Query: 728  LVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPR 549
            LVR+GL+KTARH+VIPYMPMLVPP +W  YDKG +LFLPS +MRTHG++ QREA+KR P+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 548  KQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETE 369
            KQLE VF+ALDTLGNTKWRVN++V G++ +IWA+GGRLADLVDREDVPLP  PDTEDE E
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAE 533

Query: 368  IRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHL 189
            IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+L
Sbjct: 534  IRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 593

Query: 188  NHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIF 9
            NHLGSDLCRGILEFAEGRPLG SGL+WLKIH+AN+Y GGVDKLSY+GR+AF+ENHL+DIF
Sbjct: 594  NHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIF 653

Query: 8    DS 3
            DS
Sbjct: 654  DS 655


>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 932

 Score =  757 bits (1954), Expect = 0.0
 Identities = 393/654 (60%), Positives = 473/654 (72%), Gaps = 31/654 (4%)
 Frame = -2

Query: 1871 MWRNVAKHVA----------------SSRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKM 1740
            MWR++ K  A                SS + T FSQ+S+   K R+ E +    +     
Sbjct: 1    MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 1739 GIRN-GVLLSQEDQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDE 1584
            G R  GV  SQ+D +G+ +     +P+ F       KG+AS AEAV ST  EED+S  +E
Sbjct: 61   GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVIST--EEDMSGSEE 118

Query: 1583 IQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKEL 1404
            I  L+E M++E+KK   L Q K+  +  GMG  KY+ L+KRQ+KIETEAW++AA+EY+EL
Sbjct: 119  IHELMEAMAREEKKMSFLVQPKK--VAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQEL 176

Query: 1403 LEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMA 1224
            L DMC+ KLAPNLPY+KSLFLGWF P RDSI GEQE  +    R ++A YF+ L ADMMA
Sbjct: 177  LMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMA 235

Query: 1223 VITMHKLMGLLMTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXX 1047
            V+TMHKLMGLLMT+    G +R+VQA+ +IGEAIE E +I +FL K++            
Sbjct: 236  VVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGE 295

Query: 1046 ES------DAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLI 885
                    + + K++EKL                       D  K WGQ+A  KVGCRLI
Sbjct: 296  SEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLI 355

Query: 884  ELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEK 705
            +LL+E AYIQPPVDQL D PPDIRPAF HSLK +TKD  K +RR+GVIECD LVR+GLEK
Sbjct: 356  QLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEK 415

Query: 704  TARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFE 525
            TARH+VIPYMPMLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FE
Sbjct: 416  TARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFE 475

Query: 524  ALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKV 345
            ALDTLGNTKWR+NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDE EI+ WKWKV
Sbjct: 476  ALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKV 535

Query: 344  KTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLC 165
            K   K+N+ERHS RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLC
Sbjct: 536  KAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 595

Query: 164  RGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            RG+LEFAEGRPLGKSGL+WLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDS
Sbjct: 596  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDS 649


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score =  757 bits (1954), Expect = 0.0
 Identities = 393/654 (60%), Positives = 473/654 (72%), Gaps = 31/654 (4%)
 Frame = -2

Query: 1871 MWRNVAKHVA----------------SSRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKM 1740
            MWR++ K  A                SS + T FSQ+S+   K R+ E +    +     
Sbjct: 1    MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 1739 GIRN-GVLLSQEDQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDE 1584
            G R  GV  SQ+D +G+ +     +P+ F       KG+AS AEAV ST  EED+S  +E
Sbjct: 61   GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVIST--EEDMSGSEE 118

Query: 1583 IQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKEL 1404
            I  L+E M++E+KK   L Q K+  +  GMG  KY+ L+KRQ+KIETEAW++AA+EY+EL
Sbjct: 119  IHELMEAMAREEKKMSFLVQPKK--VAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQEL 176

Query: 1403 LEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMA 1224
            L DMC+ KLAPNLPY+KSLFLGWF P RDSI GEQE  +    R ++A YF+ L ADMMA
Sbjct: 177  LMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMA 235

Query: 1223 VITMHKLMGLLMTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXX 1047
            V+TMHKLMGLLMT+    G +R+VQA+ +IGEAIE E +I +FL K++            
Sbjct: 236  VVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGE 295

Query: 1046 ES------DAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLI 885
                    + + K++EKL                       D  K WGQ+A  KVGCRLI
Sbjct: 296  SEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLI 355

Query: 884  ELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEK 705
            +LL+E AYIQPPVDQL D PPDIRPAF HSLK +TKD  K +RR+GVIECD LVR+GLEK
Sbjct: 356  QLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEK 415

Query: 704  TARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFE 525
            TARH+VIPYMPMLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FE
Sbjct: 416  TARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFE 475

Query: 524  ALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKV 345
            ALDTLGNTKWR+NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDE EI+ WKWKV
Sbjct: 476  ALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKV 535

Query: 344  KTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLC 165
            K   K+N+ERHS RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLC
Sbjct: 536  KAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 595

Query: 164  RGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            RG+LEFAEGRPLGKSGL+WLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDS
Sbjct: 596  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDS 649