BLASTX nr result

ID: Akebia26_contig00020934 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00020934
         (456 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              135   8e-30
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   135   8e-30
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   128   7e-28
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   127   1e-27
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   125   5e-27
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   125   5e-27
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   124   1e-26
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   121   1e-25
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   119   6e-25
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu...   117   1e-24
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   116   3e-24
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   112   4e-23
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   109   4e-22
ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun...   108   8e-22
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   102   4e-20
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...    99   5e-19
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]    98   1e-18
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...    98   1e-18
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...    98   1e-18
gb|AAB95289.1| unknown protein [Arabidopsis thaliana]                  98   1e-18

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  135 bits (339), Expect = 8e-30
 Identities = 77/151 (50%), Positives = 97/151 (64%), Gaps = 7/151 (4%)
 Frame = +2

Query: 20   WGQWRESHTKPSEE---SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKS 178
            WG   E +  PS +   SP+ G  +  +++ +    WGQ  G+    EG+ GW       
Sbjct: 1650 WGPSNEQNQLPSSQGWGSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGWG------ 1699

Query: 179  QSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQ 358
              SN  +WK KK R     G  +D  D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+Q
Sbjct: 1700 --SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQ 1755

Query: 359  SIKRIMHQSRYNDGDPLTADDQSYVLDHVFN 451
            SI+RIMHQ+ YNDGDPL+ADDQSY+LD VFN
Sbjct: 1756 SIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1786


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  135 bits (339), Expect = 8e-30
 Identities = 77/151 (50%), Positives = 97/151 (64%), Gaps = 7/151 (4%)
 Frame = +2

Query: 20   WGQWRESHTKPSEE---SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKS 178
            WG   E +  PS +   SP+ G  +  +++ +    WGQ  G+    EG+ GW       
Sbjct: 1590 WGPSNEQNQLPSSQGWGSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGWG------ 1639

Query: 179  QSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQ 358
              SN  +WK KK R     G  +D  D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+Q
Sbjct: 1640 --SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQ 1695

Query: 359  SIKRIMHQSRYNDGDPLTADDQSYVLDHVFN 451
            SI+RIMHQ+ YNDGDPL+ADDQSY+LD VFN
Sbjct: 1696 SIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1726


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  128 bits (322), Expect = 7e-28
 Identities = 76/159 (47%), Positives = 93/159 (58%), Gaps = 10/159 (6%)
 Frame = +2

Query: 8    GNPQWGQWRESHTKPSEESPSYGGWNIRKSE----KRPCDAWGQRDGE------EGTGGW 157
            G P+     E    P E   +  GW +  S           WGQ+  E      EG+ GW
Sbjct: 1687 GKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGW 1746

Query: 158  NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
                     SN GDWK K+ R    P K     D +ASGIFT TRQRLD FTS+EQ+ILS
Sbjct: 1747 G--------SNNGDWKNKRNR----PSK--PHEDLNASGIFTTTRQRLDVFTSQEQDILS 1792

Query: 338  DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            D+EP++ SI+RIMHQ+ YNDGDPL+ADDQSYVLD+VF+Y
Sbjct: 1793 DIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHY 1831


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  127 bits (320), Expect = 1e-27
 Identities = 67/141 (47%), Positives = 95/141 (67%), Gaps = 4/141 (2%)
 Frame = +2

Query: 44   TKPSEESPSYGGWNIRKSEKRPCDA---WGQRDGEEGTGGWNKSEG-KSQSSNAGDWKIK 211
            TKP ++S S  GW+    +    +    WGQ  G++     N+ EG ++  S+ G+WK  
Sbjct: 1620 TKPQDDSASLSGWDSPTGDGNSGERNHQWGQHRGDQTKK--NRFEGARNWVSSPGEWK-N 1676

Query: 212  KGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRY 391
            K R   SPG  +D +   A  ++T TRQRLD FTSEEQ++LS++EP+++S++RIMHQS Y
Sbjct: 1677 KNRPPKSPGMVNDNSTMGA--LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGY 1734

Query: 392  NDGDPLTADDQSYVLDHVFNY 454
            NDGDPL+ DDQS+VLD+VFNY
Sbjct: 1735 NDGDPLSGDDQSFVLDNVFNY 1755


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  125 bits (315), Expect = 5e-27
 Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 19/170 (11%)
 Frame = +2

Query: 2    NDGNPQWGQWRESHTKPSEESPSYG--------------GWNIRKSEKRPCDAWGQ-RDG 136
            ND    WGQ + +  + S ES                  GW  +KS +     WG  ++ 
Sbjct: 1686 NDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPE-VSHGWGSHKES 1744

Query: 137  EEGTG--GWNKSE--GKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLD 304
             E T   GW+K     K    NAG+WK +K R   SPG  +D  D +   ++TA+ QRLD
Sbjct: 1745 SEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPKSPGMSND--DANLRALYTASGQRLD 1802

Query: 305  QFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
             FTSEEQ+IL+D+EPI+QSI+++MHQS YNDGDPL+A+DQS+VL  VFN+
Sbjct: 1803 MFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNF 1852


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  125 bits (315), Expect = 5e-27
 Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 19/170 (11%)
 Frame = +2

Query: 2    NDGNPQWGQWRESHTKPSEESPSYG--------------GWNIRKSEKRPCDAWGQ-RDG 136
            ND    WGQ + +  + S ES                  GW  +KS +     WG  ++ 
Sbjct: 1746 NDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPE-VSHGWGSNKES 1804

Query: 137  EEGTG--GWNKSE--GKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLD 304
             E T   GW+K     K    NAG+WK +K R   SPG  +D  D +   ++TA+ QRLD
Sbjct: 1805 SEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPKSPGMSND--DANLRALYTASGQRLD 1862

Query: 305  QFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
             FTSEEQ+IL+D+EPI+QSI+++MHQS YNDGDPL+A+DQS+VL  VFN+
Sbjct: 1863 MFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNF 1912


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  124 bits (311), Expect = 1e-26
 Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
 Frame = +2

Query: 20   WGQWRESHTKPSEESP-SYGGWNIRKS---EKRPCDAWGQRDGEEGTGGWNKSEGKSQSS 187
            WG  ++ HT+     P S   W++  +    +     WGQ   E     + K+ G + SS
Sbjct: 1637 WG--KQKHTENESSQPASSNAWDLPDATGGSETEMQVWGQSRKEP----FKKNRGWASSS 1690

Query: 188  NAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIK 367
              G+WK KK R   SPG  +D  D + + ++T TRQRLD FTSEEQ+ILSDVEPI++SI+
Sbjct: 1691 --GEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIR 1746

Query: 368  RIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            RIMHQS YNDGD L+ADD+S++ D+VFNY
Sbjct: 1747 RIMHQSGYNDGDRLSADDKSFIFDNVFNY 1775


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  121 bits (303), Expect = 1e-25
 Identities = 69/149 (46%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
 Frame = +2

Query: 20   WGQWRESHTKPSEESP-SYGGWNIRKS---EKRPCDAWGQRDGEEGTGGWNKSEGKSQSS 187
            WG  ++ HT+     P S   W++  +    +     WGQ   E     + K+ G + SS
Sbjct: 1635 WG--KQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEP----FKKNRGWASSS 1688

Query: 188  NAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIK 367
              G+WK KK R   SPG  +D  D + + ++T TRQRLD FTSEEQ+ILS VEPI++SI+
Sbjct: 1689 --GEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIR 1744

Query: 368  RIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            RIMHQS YNDGD L+ADD+S++ D+VFNY
Sbjct: 1745 RIMHQSGYNDGDRLSADDKSFIFDNVFNY 1773


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  119 bits (297), Expect = 6e-25
 Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
 Frame = +2

Query: 23   GQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNK--SEGKSQSSNAG 196
            G W +     + +  +   W+   S+        Q+ G  G     K    G+S   NAG
Sbjct: 1761 GSWGQQKPSDTSQPATVNQWD---SQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNAG 1817

Query: 197  DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIM 376
            +WK K  R A SPG  +D  D S + I+TATRQRLD FTSEEQ++LS +EP + SI+RIM
Sbjct: 1818 EWKGKNSRPAKSPGMVND--DSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIM 1875

Query: 377  HQSRYNDGDPLTADDQSYVLDHVFNY 454
            HQS YNDGD L+A+D S++LD VFN+
Sbjct: 1876 HQSGYNDGDQLSAEDHSFILDKVFNF 1901


>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
            gi|550346662|gb|EEE84012.2| hypothetical protein
            POPTR_0001s06460g [Populus trichocarpa]
          Length = 888

 Score =  117 bits (294), Expect = 1e-24
 Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 6/118 (5%)
 Frame = +2

Query: 119  WGQRDGE------EGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIF 280
            WGQ+ GE      EG+ GW         SN G WK K+ R    P K     D S+SG+F
Sbjct: 760  WGQQSGEFKKNRTEGSRGWG--------SNNGHWK-KRNR----PSK--PHEDSSSSGLF 804

Query: 281  TATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            T TRQ LD FTS+EQ+ILSDVEP++ SI+RIMHQ+ Y+DGDPL+ADDQSYVLD+VFNY
Sbjct: 805  TMTRQWLDIFTSQEQDILSDVEPLMLSIRRIMHQTGYSDGDPLSADDQSYVLDNVFNY 862


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  116 bits (291), Expect = 3e-24
 Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 11/156 (7%)
 Frame = +2

Query: 20   WGQWRESHTKPSEESPSYGGWNIRKSE----KRPCDAWGQRDGE------EGTGGWNKSE 169
            W +   S    + ES S+  W  R  +    ++P + W ++ G       E +GGW    
Sbjct: 1799 WEKRTSSEISQNVESASFNSWLPRAGDGGEVEKP-NEWVKKSGSFKKNHGETSGGWG--- 1854

Query: 170  GKSQSSNAGDWKIKKGRAAMSPGKFDD-RNDWSASGIFTATRQRLDQFTSEEQNILSDVE 346
                 S++GDWKIKK      PGKF    ND ++  +FT TRQRLD FTSEEQ+ LS +E
Sbjct: 1855 -----SDSGDWKIKKNH----PGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIE 1905

Query: 347  PILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            P ++SI+RIMH+S YNDGDP+  +DQS+++D+VFNY
Sbjct: 1906 PTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNY 1941


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  112 bits (281), Expect = 4e-23
 Identities = 70/168 (41%), Positives = 94/168 (55%), Gaps = 17/168 (10%)
 Frame = +2

Query: 2    NDGNPQ--WGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEE---GTGGWNKS 166
            ND  P   WG      TK  ++S    GW  +KS +     WG  D       + GW+  
Sbjct: 1531 NDALPWSGWGTQDVIPTKTLDDSSKSSGWEQQKSPECS-QGWGSLDESNQPASSNGWDTP 1589

Query: 167  EG--KSQSSNAGDWKIKKG--RAAMSPGKFDD--------RNDWSASGIFTATRQRLDQF 310
             G   +QS     W   +G  R A    K +          +D S + ++TATRQRLD F
Sbjct: 1590 NGLGSTQSEKQHQWGQSRGSRRWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMF 1649

Query: 311  TSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            TSEEQ+ILSDVEP++QSI++IMHQS YNDGDPL+A DQS++L++VF +
Sbjct: 1650 TSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTH 1697


>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  109 bits (273), Expect = 4e-22
 Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
 Frame = +2

Query: 5    DGNPQWGQWRESHTKPSEESPSYGGWNIRK------SEKRPCDAWGQRDGEEGTGGWNKS 166
            D       W  S  K   +S    GW   K      ++++P   WG+  G     GW + 
Sbjct: 1816 DNTKNESPWSSSQ-KLLNDSTDSQGWGSSKVDTANDNDEQP--QWGRGRGRGRGRGWGRG 1872

Query: 167  EGKSQSSNAG-------DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQ 325
             G+ +  + G       DWK K+     S G  DD N   A GIFTA+RQRLD FT+EEQ
Sbjct: 1873 VGRGREGSQGRGPTNDRDWKNKR-----SGGPVDDPN---APGIFTASRQRLDSFTAEEQ 1924

Query: 326  NILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
             +L + E I+++I+R+MHQ+ YNDGDPL+ADDQ Y++D+V N+
Sbjct: 1925 EVLLETETIMKNIRRVMHQTGYNDGDPLSADDQKYIVDNVLNH 1967


>ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica]
           gi|462416248|gb|EMJ20985.1| hypothetical protein
           PRUPE_ppa024567mg [Prunus persica]
          Length = 792

 Score =  108 bits (270), Expect = 8e-22
 Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
 Frame = +2

Query: 44  TKPSEESPSYGGWNIRKSEKRPCDA---WGQRDGEEGTGGWNKSEG-KSQSSNAGDWKIK 211
           TKP ++S S  GW+    +    +    WGQ  G++     ++ EG ++  S+ G+WK  
Sbjct: 588 TKPQDDSASLSGWDSPTGDGNSGERNHQWGQHRGDQTKK--SRFEGARNWVSSPGEWK-N 644

Query: 212 KGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRY 391
           K R   SPG  +D +   A  ++T TR RLD FTSEE ++LS++EP+++S++RIMHQS Y
Sbjct: 645 KNRPPKSPGMVNDNSTMGA--LYTVTRPRLDMFTSEE-HVLSNIEPVMRSLRRIMHQSGY 701

Query: 392 NDGDPLTADDQSYVLDHV 445
           NDGDPL+ DD+S+VLD+V
Sbjct: 702 NDGDPLSGDDESFVLDNV 719


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  102 bits (255), Expect = 4e-20
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 15/160 (9%)
 Frame = +2

Query: 20   WGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRD------GEEGTGGWNKSEGKSQ 181
            WG    +  K SE+  S+G  N+   +K   +     D      G+ G  GWNK + +  
Sbjct: 1640 WGSEDTNAGKDSEKQDSWGKSNVSTWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQPEGG 1699

Query: 182  ----SSNAGDWKIKKGRAAMSPGKFDDR-----NDWSASGIFTATRQRLDQFTSEEQNIL 334
                SSN G+WK +K +   +  +  +R     ND S     TATR+R+D+F +EE+++L
Sbjct: 1700 RGWGSSNTGEWKSRKNQN-QNQNQNQNRPPRGPNDDSPRVALTATRKRMDEFPTEEKDVL 1758

Query: 335  SDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            S+VE ++QSI+RIMHQS   DG+PL  DDQ+Y++D++ NY
Sbjct: 1759 SEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNY 1798


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
 Frame = +2

Query: 8    GNPQWGQWRESHTKPSEESPSYGGWN----IRKSEKRPCD-----AWGQRDGE-EGTGGW 157
            G   WG W +     + E  +    N    +++++ R  D      WG    +   +GGW
Sbjct: 1634 GAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRDKDDKERIQWGNPAKKFPSSGGW 1693

Query: 158  NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
            +   G        DWK K+      P     R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 1694 SNGGG-------ADWKGKRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 1741

Query: 338  DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 1742 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780


>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
          Length = 1081

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 60/131 (45%), Positives = 78/131 (59%), Gaps = 7/131 (5%)
 Frame = +2

Query: 20   WGQWRESHTKPSEE---SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKS 178
            WG   E +  PS +   SP+ G  +  +++ +    WGQ  G+    EG+ GW       
Sbjct: 782  WGPSNEQNQLPSSQGWGSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGWG------ 831

Query: 179  QSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQ 358
              SN  +WK KK R     G  +D  D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+Q
Sbjct: 832  --SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQ 887

Query: 359  SIKRIMHQSRY 391
            SI+RIMHQ+ Y
Sbjct: 888  SIRRIMHQAGY 898


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
 Frame = +2

Query: 8    GNPQWGQW-------RESHTKPSEESP--SYGGWNIRKSEKRPCDAWGQRDGE-EGTGGW 157
            G   WG W        +  T   + +P  S      R+ + +    WG    +   +GGW
Sbjct: 1634 GAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGW 1693

Query: 158  NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
            +   G        DWK  +      P     R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 1694 SNGGG-------ADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 1741

Query: 338  DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 1742 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase V subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
            DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
            DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
            Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
            AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
            gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
            alpha subunit [Arabidopsis thaliana]
            gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
            large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
 Frame = +2

Query: 8    GNPQWGQW-------RESHTKPSEESP--SYGGWNIRKSEKRPCDAWGQRDGE-EGTGGW 157
            G   WG W        +  T   + +P  S      R+ + +    WG    +   +GGW
Sbjct: 1634 GAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGW 1693

Query: 158  NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
            +   G        DWK  +      P     R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 1694 SNGGG-------ADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 1741

Query: 338  DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
            DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 1742 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780


>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
          Length = 839

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
 Frame = +2

Query: 8   GNPQWGQW-------RESHTKPSEESP--SYGGWNIRKSEKRPCDAWGQRDGE-EGTGGW 157
           G   WG W        +  T   + +P  S      R+ + +    WG    +   +GGW
Sbjct: 497 GAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGW 556

Query: 158 NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
           +   G        DWK  +      P     R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 557 SNGGG-------ADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 604

Query: 338 DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
           DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 605 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 643


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