BLASTX nr result
ID: Akebia26_contig00020934
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia26_contig00020934
(456 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 135 8e-30
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 135 8e-30
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 128 7e-28
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 127 1e-27
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 125 5e-27
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 125 5e-27
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 124 1e-26
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 121 1e-25
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 119 6e-25
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 117 1e-24
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 116 3e-24
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 112 4e-23
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 109 4e-22
ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun... 108 8e-22
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 102 4e-20
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 99 5e-19
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 98 1e-18
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 98 1e-18
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 98 1e-18
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 98 1e-18
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 135 bits (339), Expect = 8e-30
Identities = 77/151 (50%), Positives = 97/151 (64%), Gaps = 7/151 (4%)
Frame = +2
Query: 20 WGQWRESHTKPSEE---SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKS 178
WG E + PS + SP+ G + +++ + WGQ G+ EG+ GW
Sbjct: 1650 WGPSNEQNQLPSSQGWGSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGWG------ 1699
Query: 179 QSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQ 358
SN +WK KK R G +D D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+Q
Sbjct: 1700 --SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQ 1755
Query: 359 SIKRIMHQSRYNDGDPLTADDQSYVLDHVFN 451
SI+RIMHQ+ YNDGDPL+ADDQSY+LD VFN
Sbjct: 1756 SIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1786
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 135 bits (339), Expect = 8e-30
Identities = 77/151 (50%), Positives = 97/151 (64%), Gaps = 7/151 (4%)
Frame = +2
Query: 20 WGQWRESHTKPSEE---SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKS 178
WG E + PS + SP+ G + +++ + WGQ G+ EG+ GW
Sbjct: 1590 WGPSNEQNQLPSSQGWGSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGWG------ 1639
Query: 179 QSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQ 358
SN +WK KK R G +D D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+Q
Sbjct: 1640 --SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQ 1695
Query: 359 SIKRIMHQSRYNDGDPLTADDQSYVLDHVFN 451
SI+RIMHQ+ YNDGDPL+ADDQSY+LD VFN
Sbjct: 1696 SIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1726
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 128 bits (322), Expect = 7e-28
Identities = 76/159 (47%), Positives = 93/159 (58%), Gaps = 10/159 (6%)
Frame = +2
Query: 8 GNPQWGQWRESHTKPSEESPSYGGWNIRKSE----KRPCDAWGQRDGE------EGTGGW 157
G P+ E P E + GW + S WGQ+ E EG+ GW
Sbjct: 1687 GKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGW 1746
Query: 158 NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
SN GDWK K+ R P K D +ASGIFT TRQRLD FTS+EQ+ILS
Sbjct: 1747 G--------SNNGDWKNKRNR----PSK--PHEDLNASGIFTTTRQRLDVFTSQEQDILS 1792
Query: 338 DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
D+EP++ SI+RIMHQ+ YNDGDPL+ADDQSYVLD+VF+Y
Sbjct: 1793 DIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHY 1831
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 127 bits (320), Expect = 1e-27
Identities = 67/141 (47%), Positives = 95/141 (67%), Gaps = 4/141 (2%)
Frame = +2
Query: 44 TKPSEESPSYGGWNIRKSEKRPCDA---WGQRDGEEGTGGWNKSEG-KSQSSNAGDWKIK 211
TKP ++S S GW+ + + WGQ G++ N+ EG ++ S+ G+WK
Sbjct: 1620 TKPQDDSASLSGWDSPTGDGNSGERNHQWGQHRGDQTKK--NRFEGARNWVSSPGEWK-N 1676
Query: 212 KGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRY 391
K R SPG +D + A ++T TRQRLD FTSEEQ++LS++EP+++S++RIMHQS Y
Sbjct: 1677 KNRPPKSPGMVNDNSTMGA--LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGY 1734
Query: 392 NDGDPLTADDQSYVLDHVFNY 454
NDGDPL+ DDQS+VLD+VFNY
Sbjct: 1735 NDGDPLSGDDQSFVLDNVFNY 1755
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 125 bits (315), Expect = 5e-27
Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 19/170 (11%)
Frame = +2
Query: 2 NDGNPQWGQWRESHTKPSEESPSYG--------------GWNIRKSEKRPCDAWGQ-RDG 136
ND WGQ + + + S ES GW +KS + WG ++
Sbjct: 1686 NDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPE-VSHGWGSHKES 1744
Query: 137 EEGTG--GWNKSE--GKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLD 304
E T GW+K K NAG+WK +K R SPG +D D + ++TA+ QRLD
Sbjct: 1745 SEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPKSPGMSND--DANLRALYTASGQRLD 1802
Query: 305 QFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
FTSEEQ+IL+D+EPI+QSI+++MHQS YNDGDPL+A+DQS+VL VFN+
Sbjct: 1803 MFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNF 1852
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 125 bits (315), Expect = 5e-27
Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 19/170 (11%)
Frame = +2
Query: 2 NDGNPQWGQWRESHTKPSEESPSYG--------------GWNIRKSEKRPCDAWGQ-RDG 136
ND WGQ + + + S ES GW +KS + WG ++
Sbjct: 1746 NDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPE-VSHGWGSNKES 1804
Query: 137 EEGTG--GWNKSE--GKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLD 304
E T GW+K K NAG+WK +K R SPG +D D + ++TA+ QRLD
Sbjct: 1805 SEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPKSPGMSND--DANLRALYTASGQRLD 1862
Query: 305 QFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
FTSEEQ+IL+D+EPI+QSI+++MHQS YNDGDPL+A+DQS+VL VFN+
Sbjct: 1863 MFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNF 1912
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 124 bits (311), Expect = 1e-26
Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Frame = +2
Query: 20 WGQWRESHTKPSEESP-SYGGWNIRKS---EKRPCDAWGQRDGEEGTGGWNKSEGKSQSS 187
WG ++ HT+ P S W++ + + WGQ E + K+ G + SS
Sbjct: 1637 WG--KQKHTENESSQPASSNAWDLPDATGGSETEMQVWGQSRKEP----FKKNRGWASSS 1690
Query: 188 NAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIK 367
G+WK KK R SPG +D D + + ++T TRQRLD FTSEEQ+ILSDVEPI++SI+
Sbjct: 1691 --GEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIR 1746
Query: 368 RIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
RIMHQS YNDGD L+ADD+S++ D+VFNY
Sbjct: 1747 RIMHQSGYNDGDRLSADDKSFIFDNVFNY 1775
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 121 bits (303), Expect = 1e-25
Identities = 69/149 (46%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Frame = +2
Query: 20 WGQWRESHTKPSEESP-SYGGWNIRKS---EKRPCDAWGQRDGEEGTGGWNKSEGKSQSS 187
WG ++ HT+ P S W++ + + WGQ E + K+ G + SS
Sbjct: 1635 WG--KQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEP----FKKNRGWASSS 1688
Query: 188 NAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIK 367
G+WK KK R SPG +D D + + ++T TRQRLD FTSEEQ+ILS VEPI++SI+
Sbjct: 1689 --GEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIR 1744
Query: 368 RIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
RIMHQS YNDGD L+ADD+S++ D+VFNY
Sbjct: 1745 RIMHQSGYNDGDRLSADDKSFIFDNVFNY 1773
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 119 bits (297), Expect = 6e-25
Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +2
Query: 23 GQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNK--SEGKSQSSNAG 196
G W + + + + W+ S+ Q+ G G K G+S NAG
Sbjct: 1761 GSWGQQKPSDTSQPATVNQWD---SQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNAG 1817
Query: 197 DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIM 376
+WK K R A SPG +D D S + I+TATRQRLD FTSEEQ++LS +EP + SI+RIM
Sbjct: 1818 EWKGKNSRPAKSPGMVND--DSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIM 1875
Query: 377 HQSRYNDGDPLTADDQSYVLDHVFNY 454
HQS YNDGD L+A+D S++LD VFN+
Sbjct: 1876 HQSGYNDGDQLSAEDHSFILDKVFNF 1901
>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
gi|550346662|gb|EEE84012.2| hypothetical protein
POPTR_0001s06460g [Populus trichocarpa]
Length = 888
Score = 117 bits (294), Expect = 1e-24
Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 6/118 (5%)
Frame = +2
Query: 119 WGQRDGE------EGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIF 280
WGQ+ GE EG+ GW SN G WK K+ R P K D S+SG+F
Sbjct: 760 WGQQSGEFKKNRTEGSRGWG--------SNNGHWK-KRNR----PSK--PHEDSSSSGLF 804
Query: 281 TATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
T TRQ LD FTS+EQ+ILSDVEP++ SI+RIMHQ+ Y+DGDPL+ADDQSYVLD+VFNY
Sbjct: 805 TMTRQWLDIFTSQEQDILSDVEPLMLSIRRIMHQTGYSDGDPLSADDQSYVLDNVFNY 862
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 116 bits (291), Expect = 3e-24
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 11/156 (7%)
Frame = +2
Query: 20 WGQWRESHTKPSEESPSYGGWNIRKSE----KRPCDAWGQRDGE------EGTGGWNKSE 169
W + S + ES S+ W R + ++P + W ++ G E +GGW
Sbjct: 1799 WEKRTSSEISQNVESASFNSWLPRAGDGGEVEKP-NEWVKKSGSFKKNHGETSGGWG--- 1854
Query: 170 GKSQSSNAGDWKIKKGRAAMSPGKFDD-RNDWSASGIFTATRQRLDQFTSEEQNILSDVE 346
S++GDWKIKK PGKF ND ++ +FT TRQRLD FTSEEQ+ LS +E
Sbjct: 1855 -----SDSGDWKIKKNH----PGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIE 1905
Query: 347 PILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
P ++SI+RIMH+S YNDGDP+ +DQS+++D+VFNY
Sbjct: 1906 PTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNY 1941
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 112 bits (281), Expect = 4e-23
Identities = 70/168 (41%), Positives = 94/168 (55%), Gaps = 17/168 (10%)
Frame = +2
Query: 2 NDGNPQ--WGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEE---GTGGWNKS 166
ND P WG TK ++S GW +KS + WG D + GW+
Sbjct: 1531 NDALPWSGWGTQDVIPTKTLDDSSKSSGWEQQKSPECS-QGWGSLDESNQPASSNGWDTP 1589
Query: 167 EG--KSQSSNAGDWKIKKG--RAAMSPGKFDD--------RNDWSASGIFTATRQRLDQF 310
G +QS W +G R A K + +D S + ++TATRQRLD F
Sbjct: 1590 NGLGSTQSEKQHQWGQSRGSRRWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMF 1649
Query: 311 TSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
TSEEQ+ILSDVEP++QSI++IMHQS YNDGDPL+A DQS++L++VF +
Sbjct: 1650 TSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTH 1697
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 109 bits (273), Expect = 4e-22
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
Frame = +2
Query: 5 DGNPQWGQWRESHTKPSEESPSYGGWNIRK------SEKRPCDAWGQRDGEEGTGGWNKS 166
D W S K +S GW K ++++P WG+ G GW +
Sbjct: 1816 DNTKNESPWSSSQ-KLLNDSTDSQGWGSSKVDTANDNDEQP--QWGRGRGRGRGRGWGRG 1872
Query: 167 EGKSQSSNAG-------DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQ 325
G+ + + G DWK K+ S G DD N A GIFTA+RQRLD FT+EEQ
Sbjct: 1873 VGRGREGSQGRGPTNDRDWKNKR-----SGGPVDDPN---APGIFTASRQRLDSFTAEEQ 1924
Query: 326 NILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
+L + E I+++I+R+MHQ+ YNDGDPL+ADDQ Y++D+V N+
Sbjct: 1925 EVLLETETIMKNIRRVMHQTGYNDGDPLSADDQKYIVDNVLNH 1967
>ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica]
gi|462416248|gb|EMJ20985.1| hypothetical protein
PRUPE_ppa024567mg [Prunus persica]
Length = 792
Score = 108 bits (270), Expect = 8e-22
Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Frame = +2
Query: 44 TKPSEESPSYGGWNIRKSEKRPCDA---WGQRDGEEGTGGWNKSEG-KSQSSNAGDWKIK 211
TKP ++S S GW+ + + WGQ G++ ++ EG ++ S+ G+WK
Sbjct: 588 TKPQDDSASLSGWDSPTGDGNSGERNHQWGQHRGDQTKK--SRFEGARNWVSSPGEWK-N 644
Query: 212 KGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRY 391
K R SPG +D + A ++T TR RLD FTSEE ++LS++EP+++S++RIMHQS Y
Sbjct: 645 KNRPPKSPGMVNDNSTMGA--LYTVTRPRLDMFTSEE-HVLSNIEPVMRSLRRIMHQSGY 701
Query: 392 NDGDPLTADDQSYVLDHV 445
NDGDPL+ DD+S+VLD+V
Sbjct: 702 NDGDPLSGDDESFVLDNV 719
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 102 bits (255), Expect = 4e-20
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 15/160 (9%)
Frame = +2
Query: 20 WGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRD------GEEGTGGWNKSEGKSQ 181
WG + K SE+ S+G N+ +K + D G+ G GWNK + +
Sbjct: 1640 WGSEDTNAGKDSEKQDSWGKSNVSTWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQPEGG 1699
Query: 182 ----SSNAGDWKIKKGRAAMSPGKFDDR-----NDWSASGIFTATRQRLDQFTSEEQNIL 334
SSN G+WK +K + + + +R ND S TATR+R+D+F +EE+++L
Sbjct: 1700 RGWGSSNTGEWKSRKNQN-QNQNQNQNRPPRGPNDDSPRVALTATRKRMDEFPTEEKDVL 1758
Query: 335 SDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
S+VE ++QSI+RIMHQS DG+PL DDQ+Y++D++ NY
Sbjct: 1759 SEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNY 1798
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 99.4 bits (246), Expect = 5e-19
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Frame = +2
Query: 8 GNPQWGQWRESHTKPSEESPSYGGWN----IRKSEKRPCD-----AWGQRDGE-EGTGGW 157
G WG W + + E + N +++++ R D WG + +GGW
Sbjct: 1634 GAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRDKDDKERIQWGNPAKKFPSSGGW 1693
Query: 158 NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
+ G DWK K+ P R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 1694 SNGGG-------ADWKGKRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 1741
Query: 338 DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 1742 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780
>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 98.2 bits (243), Expect = 1e-18
Identities = 60/131 (45%), Positives = 78/131 (59%), Gaps = 7/131 (5%)
Frame = +2
Query: 20 WGQWRESHTKPSEE---SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKS 178
WG E + PS + SP+ G + +++ + WGQ G+ EG+ GW
Sbjct: 782 WGPSNEQNQLPSSQGWGSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGWG------ 831
Query: 179 QSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQ 358
SN +WK KK R G +D D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+Q
Sbjct: 832 --SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQ 887
Query: 359 SIKRIMHQSRY 391
SI+RIMHQ+ Y
Sbjct: 888 SIRRIMHQAGY 898
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 97.8 bits (242), Expect = 1e-18
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Frame = +2
Query: 8 GNPQWGQW-------RESHTKPSEESP--SYGGWNIRKSEKRPCDAWGQRDGE-EGTGGW 157
G WG W + T + +P S R+ + + WG + +GGW
Sbjct: 1634 GAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGW 1693
Query: 158 NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
+ G DWK + P R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 1694 SNGGG-------ADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 1741
Query: 338 DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 1742 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 97.8 bits (242), Expect = 1e-18
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Frame = +2
Query: 8 GNPQWGQW-------RESHTKPSEESP--SYGGWNIRKSEKRPCDAWGQRDGE-EGTGGW 157
G WG W + T + +P S R+ + + WG + +GGW
Sbjct: 1634 GAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGW 1693
Query: 158 NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
+ G DWK + P R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 1694 SNGGG-------ADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 1741
Query: 338 DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 1742 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 97.8 bits (242), Expect = 1e-18
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Frame = +2
Query: 8 GNPQWGQW-------RESHTKPSEESP--SYGGWNIRKSEKRPCDAWGQRDGE-EGTGGW 157
G WG W + T + +P S R+ + + WG + +GGW
Sbjct: 497 GAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGW 556
Query: 158 NKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILS 337
+ G DWK + P R++ + + +FTATRQRLD FTSEEQ +LS
Sbjct: 557 SNGGG-------ADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFTSEEQELLS 604
Query: 338 DVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNY 454
DVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+
Sbjct: 605 DVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 643