BLASTX nr result
ID: Akebia26_contig00020810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia26_contig00020810
(2006 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 205 e-121
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 210 e-112
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 193 e-107
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 193 e-107
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 193 e-107
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 190 e-102
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 190 e-102
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 211 e-102
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 185 e-101
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 188 e-101
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 184 1e-99
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 180 1e-99
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 182 5e-99
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 180 8e-99
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 201 1e-98
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 183 2e-98
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 184 2e-98
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 194 4e-98
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 183 7e-98
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 182 1e-97
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 205 bits (522), Expect(4) = e-121
Identities = 96/119 (80%), Positives = 108/119 (90%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1504 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 1563
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+TLLR +IKKN+KTWEDCLPHVEFAYN +HSA+KFSPF+IVY FN TPL+L PLP+
Sbjct: 1564 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPL 1622
Score = 143 bits (361), Expect(4) = e-121
Identities = 64/104 (61%), Positives = 83/104 (79%)
Frame = -3
Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFL 784
D + +DALS RYVLLS+LDAKL GFE IK LYA + DF + Y+ C+K G Y+RHDGFL
Sbjct: 1311 DNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFL 1370
Query: 783 FRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
F +N+LC+PN ++RE +RE+HGGGLMGHFGV+KT+ V Q+HF+
Sbjct: 1371 FYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFH 1414
Score = 134 bits (338), Expect(4) = e-121
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
MKR ++RIC RC TC+QAK++ PHGLYTPLPIPS PW DISMDFV+GLPR R G+D IF
Sbjct: 1418 MKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIF 1477
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA H+A
Sbjct: 1478 VVVDRFSKMAHFIPCHKTDDAIHIA 1502
Score = 24.6 bits (52), Expect(4) = e-121
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 42 LSECVNLDGKRKAE 1
LSE V+LDGK+KAE
Sbjct: 1622 LSERVSLDGKKKAE 1635
Score = 189 bits (481), Expect(2) = 1e-61
Identities = 111/238 (46%), Positives = 147/238 (61%), Gaps = 2/238 (0%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKP-- 1314
N++I D +E+ HYVE+EELLHKAI EKQ+K P KD + F+
Sbjct: 574 NRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKP--SYHKDERSGFQKDY 631
Query: 1315 KEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESA 1494
K K K+ K + + + ++R IK F+CQG H ASE NKR+M++ G+IES
Sbjct: 632 KPFIKPKVEDQDQKGKGKA-VMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGEIESE 690
Query: 1495 SSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKV 1674
E S ED + P G+LLVT +ALS+ K+D ++EQRE++FH C V DKV
Sbjct: 691 DEQLEESSSTED-----YEAPSKGELLVTMKALSVIAKTD-EQEQRENLFHSSCMVNDKV 744
Query: 1675 CILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGK 1848
C LIID SCTNVAS +VEKL LK+ KHP+ YKLQ LN+ GE+ V++QV+VP SIGK
Sbjct: 745 CSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGK 802
Score = 76.6 bits (187), Expect(2) = 1e-61
Identities = 34/66 (51%), Positives = 52/66 (78%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
+MK++M KRF+ SHYY++L+ +L+ LVQG+ +VE YYK+M+ M+RA+I+ D EA M+RF
Sbjct: 510 QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569
Query: 1133 IAGTKR 1150
+ G R
Sbjct: 570 MGGLNR 575
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 192 bits (488), Expect(3) = e-112
Identities = 96/130 (73%), Positives = 106/130 (81%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF++IVRLHG+PR+IVSDRD KFLS F K LW KLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 905 LFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRT 964
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV* 35
L+TLLR II+KN+K WEDCLP EFAYNR VHS T FSPFEIVY FN LTPL+L PLPV
Sbjct: 965 LSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVN 1024
Query: 34 VCESRWKKKS 5
S +KK+
Sbjct: 1025 EMTSLDEKKN 1034
Score = 133 bits (334), Expect(3) = e-112
Identities = 64/102 (62%), Positives = 77/102 (75%)
Frame = -3
Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFRENK 769
DALS RY L+STL+AKL GFE +KELYA + DF+ Y C+K G ++R DG+LFREN+
Sbjct: 717 DALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENR 776
Query: 768 LCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
LCVPN +MRE LVRE+H GGLMGHFGV KTL V EH + K
Sbjct: 777 LCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPK 818
Score = 129 bits (325), Expect(3) = e-112
Identities = 61/85 (71%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
MKR ++R C RCIT R AKS+V PHGLYT L +PS PW+DISMDFVLGL R+R+GRD IF
Sbjct: 819 MKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIF 878
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA+H+A
Sbjct: 879 VVVDRFSKMTHFISCHKTDDATHIA 903
Score = 210 bits (534), Expect(2) = 4e-59
Identities = 113/232 (48%), Positives = 146/232 (62%), Gaps = 4/232 (1%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNP--WRPNW-KDNKIPFK 1311
N++IA+VVEL HYVE+E ++H AIKVE+Q+K + WRPN KD + FK
Sbjct: 176 NRDIANVVELQHYVELENMVHMAIKVERQLKRKGTLSFQNPGSSASWRPNGRKDEGVVFK 235
Query: 1312 PKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIES 1491
K + + ++ + ++ IKCF G HIAS+ PNKR M+ +G++E+
Sbjct: 236 SKTKPPKRRDEAPNVNKGKNESQTRNHDIKCFHYLGVGHIASQCPNKRTMIAHVDGEVET 295
Query: 1492 ASSSDNEMSP-LEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFHPRCHVKD 1668
S D++ P LED D V+ PV G+ LV RRALS Q K D E+QRE+IFH RCH+ +
Sbjct: 296 ESEEDDDQMPSLEDSCDDNVEYPVEGESLVARRALSAQVKKDDMEQQRENIFHTRCHINN 355
Query: 1669 KVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQV 1824
KVC +IID SC NVAST LVEKLNL KHP+ YKLQ LNDCGEVK K V
Sbjct: 356 KVCSMIIDGGSCANVASTTLVEKLNLPTLKHPRPYKLQWLNDCGEVKEYKDV 407
Score = 47.8 bits (112), Expect(2) = 4e-59
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +2
Query: 1046 NVEYYYKKMKITMIRANIEGDKEATMARFIAGTKR 1150
NV+ Y+K+M+I MIRAN+E D+E TMARF+ G R
Sbjct: 143 NVDDYHKEMEIAMIRANVEEDRETTMARFLNGLNR 177
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 193 bits (491), Expect(3) = e-107
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+
Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 1434
Score = 133 bits (335), Expect(3) = e-107
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1230 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 1289
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDASH+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKSDDASHIA 1314
Score = 114 bits (284), Expect(3) = e-107
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781
I +DALS + VLL+ L+ K+ G E IKELY+ +LDFSE Y C Y HDGFLF
Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 1183
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K
Sbjct: 1184 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 1229
Score = 162 bits (411), Expect(2) = 9e-52
Identities = 101/286 (35%), Positives = 146/286 (51%), Gaps = 24/286 (8%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXX--------NNPWRPNWKDN 1296
++ I +VE Y + EL+H+A K E+Q++ + + N
Sbjct: 277 HRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSRGSGN 336
Query: 1297 KIPFKPKEDA--------KSKLSISIPKDRPET--------NPLIKSRQIKCFRCQGFKH 1428
+ F S ++ P +R KS I+CF+C G H
Sbjct: 337 RGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCGGRGH 396
Query: 1429 IASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPK 1608
+A E PN R +VV G+ ES S + E S E+ + ++ E G LV + LS+Q
Sbjct: 397 VARECPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDICEFESGAALVVTQILSVQ-M 455
Query: 1609 SDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLL 1788
SD + QR ++F R V+DKV +IID SC N+AS +VEKL LKL KHP Y +Q L
Sbjct: 456 SDAENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWL 515
Query: 1789 NDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1926
N+ G +K+ ++V+VPF IG+Y+D + CDVAPM H+LLGRPW D
Sbjct: 516 NNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRPWQYD 561
Score = 70.5 bits (171), Expect(2) = 9e-52
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
EMK M RF+ HY +DL+ KLQ L QGS++V+ YYK+M+ MIRAN+ D+E ++ARF
Sbjct: 213 EMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARF 272
Query: 1133 IAGTKR 1150
++G R
Sbjct: 273 MSGLHR 278
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 193 bits (491), Expect(3) = e-107
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 402
Score = 133 bits (335), Expect(3) = e-107
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282
Score = 114 bits (284), Expect(3) = e-107
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781
I +DALS + VLL+ L+ K+ G E IKELY+ +LDFSE Y C Y HDGFLF
Sbjct: 92 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 193 bits (490), Expect(3) = e-107
Identities = 91/119 (76%), Positives = 101/119 (84%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPL 402
Score = 133 bits (335), Expect(3) = e-107
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282
Score = 112 bits (280), Expect(3) = e-107
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781
I +DALS + VLL+ L+ K+ G E IKELY +LDFSE Y C Y HDGFLF
Sbjct: 92 IVADALSRKNVLLNQLEVKVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 171 bits (434), Expect(3) = e-102
Identities = 83/118 (70%), Positives = 97/118 (82%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383
Score = 127 bits (319), Expect(3) = e-102
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778
+ +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134
Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176
Score = 124 bits (311), Expect(3) = e-102
Identities = 54/86 (62%), Positives = 70/86 (81%)
Frame = -1
Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSI 1238
Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399
FVVVDRFS M FI KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264
Score = 190 bits (482), Expect(2) = 5e-59
Identities = 112/275 (40%), Positives = 160/275 (58%), Gaps = 11/275 (4%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------W--K 1290
N EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN W +
Sbjct: 254 NTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKPWSTQ 307
Query: 1291 DNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVV 1467
+ K P KP++D K K+ P+++ S I+C +C G H+ E P++R +++
Sbjct: 308 EGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRRNILL 365
Query: 1468 LANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFH 1647
NG+ ES S E + +++ P G + V RR ++I S DE QRE++FH
Sbjct: 366 RENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSV-DEGQRENLFH 424
Query: 1648 PRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVR 1827
RC +K K +IID SC NV S+ LV+KL + K Y+LQ LNDCGEV+VNKQ
Sbjct: 425 TRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCM 484
Query: 1828 VPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1932
+ F++G+Y DE++CDV PM A H+LLGRPW D D
Sbjct: 485 ISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519
Score = 67.4 bits (163), Expect(2) = 5e-59
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ARF
Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249
Query: 1133 IAG 1141
+ G
Sbjct: 250 LNG 252
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 171 bits (434), Expect(3) = e-102
Identities = 83/118 (70%), Positives = 97/118 (82%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383
Score = 127 bits (319), Expect(3) = e-102
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778
+ +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134
Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176
Score = 123 bits (308), Expect(3) = e-102
Identities = 54/86 (62%), Positives = 70/86 (81%)
Frame = -1
Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSI 1238
Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399
FVVVDRFS M FI KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264
Score = 190 bits (482), Expect(2) = 5e-59
Identities = 112/275 (40%), Positives = 160/275 (58%), Gaps = 11/275 (4%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------W--K 1290
N EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN W +
Sbjct: 254 NTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKPWSTQ 307
Query: 1291 DNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVV 1467
+ K P KP++D K K+ P+++ S I+C +C G H+ E P++R +++
Sbjct: 308 EGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRRNILL 365
Query: 1468 LANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFH 1647
NG+ ES S E + +++ P G + V RR ++I S DE QRE++FH
Sbjct: 366 RENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSV-DEGQRENLFH 424
Query: 1648 PRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVR 1827
RC +K K +IID SC NV S+ LV+KL + K Y+LQ LNDCGEV+VNKQ
Sbjct: 425 TRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCM 484
Query: 1828 VPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1932
+ F++G+Y DE++CDV PM A H+LLGRPW D D
Sbjct: 485 ISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519
Score = 67.4 bits (163), Expect(2) = 5e-59
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ARF
Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249
Query: 1133 IAG 1141
+ G
Sbjct: 250 LNG 252
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 209 bits (532), Expect(3) = e-102
Identities = 98/119 (82%), Positives = 109/119 (91%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 879 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+TLLR +IKKN+KTWEDCLPHVEFAYN VHSATKFSPF+IVY FN +TPL+L PLP+
Sbjct: 939 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPL 997
Score = 129 bits (323), Expect(3) = e-102
Identities = 59/85 (69%), Positives = 68/85 (80%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
MKR ++R+C RC TC+QAK++ PHGL TPLPIP PW DISMDFV+GLPR R G+D IF
Sbjct: 793 MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIF 852
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA H+A
Sbjct: 853 VVVDRFSKMAHFIPCHKTDDAMHIA 877
Score = 84.0 bits (206), Expect(3) = e-102
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = -3
Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
RH+GFLF +N+LC+PN ++RE +RE+HGGGLMGHFGV+KTL V Q+HF+
Sbjct: 740 RHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFH 789
Score = 211 bits (538), Expect(2) = 3e-66
Identities = 113/262 (43%), Positives = 159/262 (60%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKPKE 1320
N++I D E+ HY +EEL HKA+ EKQIK + P ++ K F+ +
Sbjct: 195 NRDILDRFEVIHYENLEELFHKAVMFEKQIKRRSAKPSYNSSKP--SYQREEKSGFQKEY 252
Query: 1321 DAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASS 1500
K + + + + ++R +KCF+C G H ASE NKR+M++ +G++ES
Sbjct: 253 KPFVKPKVEEISSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEVESEDE 312
Query: 1501 SDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCI 1680
E SDVE E G+LLVT R LS+ K++ ++ QRE++FH RC +K KVC
Sbjct: 313 KPEE-------SDVE--EAPKGELLVTMRVLSVLNKAE-EQAQRENLFHTRCLIKGKVCS 362
Query: 1681 LIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDE 1860
LIID SCTNVAS +V+KL L+ HPK YKLQ LN+ GE+ V +QV+VP +IGKY DE
Sbjct: 363 LIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAVTRQVQVPLAIGKYEDE 422
Query: 1861 VICDVAPMHAGHILLGRPWVRD 1926
++CD+ P+ A H+LLGRPW D
Sbjct: 423 ILCDILPLEASHVLLGRPWQSD 444
Score = 70.1 bits (170), Expect(2) = 3e-66
Identities = 29/67 (43%), Positives = 53/67 (79%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
+++K++M +RF+ SHY+++L+ +L+ LVQG+ VE Y+K+M+ M+RA+++ + EATM+R
Sbjct: 130 NQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSR 189
Query: 1130 FIAGTKR 1150
F+ G R
Sbjct: 190 FMGGLNR 196
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 185 bits (470), Expect(3) = e-101
Identities = 86/118 (72%), Positives = 100/118 (84%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1313 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1372
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPH+EFAYNR +HS TK PF+IVY P++L PLP
Sbjct: 1373 LSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1430
Score = 131 bits (330), Expect(3) = e-101
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1286
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDASH+A
Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIA 1311
Score = 103 bits (256), Expect(3) = e-101
Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
I +DALS RY LL+ LD K+FG E IK+ YA + DF++ CK T + +DGF+F
Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1180
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+
Sbjct: 1181 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223
Score = 157 bits (398), Expect(2) = 7e-48
Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 27/292 (9%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKPKE 1320
N+EI D+V+ Y M L H A K E++++ + +W+ P +
Sbjct: 287 NREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPPAGRT 346
Query: 1321 DAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHIASEGP 1446
+ S K + + P + + + R ++C RC+GF H+ + P
Sbjct: 347 ASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCP 406
Query: 1447 NKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTRRALSI 1599
+KRV+VV +G+ SAS D++ L + + P H + L+ +R LS
Sbjct: 407 SKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSA 466
Query: 1600 QPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKL 1779
Q + ++ QR +F +C VK++ C +IID SC N+AS+ +VEKL L + HP Y +
Sbjct: 467 QMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYI 525
Query: 1780 QLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1935
Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW D D+
Sbjct: 526 QWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 577
Score = 62.4 bits (150), Expect(2) = 7e-48
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
D +K VM RF+ S+Y +DL +LQ L QG+ +VE YY+++++ ++R N+E ++A MAR
Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMAR 281
Query: 1130 FIAGTKR 1150
F+ G R
Sbjct: 282 FLGGLNR 288
Score = 105 bits (262), Expect(2) = 8e-33
Identities = 51/112 (45%), Positives = 73/112 (65%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
L+F IV LHG+P+ IVSDR+++F S+F K L +LGT+L FST HPQ DGQTE +N+
Sbjct: 2135 LYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQI 2194
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPL 59
L +L + KTW+ LP+ EF+YN ++ + +P+E +Y TPL
Sbjct: 2195 LEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 2246
Score = 64.3 bits (155), Expect(2) = 8e-33
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -1
Query: 656 SMKRKIKRICGRCITCRQAKSQ-VHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDL 480
SMKR+I C C++ K++ P GL PL +P W +I MDF+ GLP+ + G D
Sbjct: 2047 SMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDS 2106
Query: 479 IFVVVDRFS*MVHFI 435
I+VVVDR + + FI
Sbjct: 2107 IWVVVDRLTKVARFI 2121
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 188 bits (478), Expect(3) = e-101
Identities = 88/118 (74%), Positives = 101/118 (85%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRDAKFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1375
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WEDCLPH+EFAYNR +HS TK PF+IVY P++L PLP
Sbjct: 1376 LSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1433
Score = 130 bits (327), Expect(3) = e-101
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + R+ RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR R GRD +F
Sbjct: 1230 MRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVF 1289
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA+H+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKTDDATHIA 1314
Score = 101 bits (251), Expect(3) = e-101
Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTN-GTYFRHDGFLF 781
I +DALS RY LL+ LD K+FG E IK+ Y + DF + CK Y DGF+F
Sbjct: 1124 IIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVF 1183
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ K
Sbjct: 1184 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPK 1229
Score = 157 bits (396), Expect(2) = 2e-48
Identities = 98/300 (32%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRPNWKDNKI-- 1302
N+EI D++ Y + L H A K E++++ + PW+ +
Sbjct: 281 NREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTTTSMTGR 340
Query: 1303 -----------------PFKPKEDAKSKLSISIPKDRPETNPLI---KSRQIKCFRCQGF 1422
KP+ + + + S K + + ++R + C+RC+G+
Sbjct: 341 TLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCYRCKGY 400
Query: 1423 KHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV----------HGDL 1572
H+ + PN+RV+VV +G SAS D L D KEP H +
Sbjct: 401 GHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDAEHYES 460
Query: 1573 LVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKL 1752
L+ +R LS Q + ++ QR +F +C +K++ C LIID SC N+AS+ +VEKL L
Sbjct: 461 LIVQRVLSAQMEK-AEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEKLALTT 519
Query: 1753 QKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1932
+ HP Y +Q LN+ G+VKV K VR+ F+IG Y D V CDV PM A +ILLGRPW D D
Sbjct: 520 KPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPWQFDSD 579
Score = 64.7 bits (156), Expect(2) = 2e-48
Identities = 31/67 (46%), Positives = 47/67 (70%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
D +K VM RF+ S+Y +D+ KLQ L QG+ +VE YY+++++ M+R NIE +E+ MAR
Sbjct: 216 DALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMAR 275
Query: 1130 FIAGTKR 1150
F+ G R
Sbjct: 276 FLGGLNR 282
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 184 bits (467), Expect(3) = 1e-99
Identities = 88/118 (74%), Positives = 99/118 (83%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458
Score = 126 bits (316), Expect(3) = 1e-99
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AK +++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339
Score = 103 bits (258), Expect(3) = 1e-99
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF + CK+ T + +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254
Score = 155 bits (391), Expect = 8e-35
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 36/301 (11%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKI------ 1302
N+EI D++ Y + L H A K E++++ + +W + +
Sbjct: 289 NREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAGRASSWTSSNVAAPSTR 348
Query: 1303 ---PFKPKEDAKSKLSISIPKDRPETNPLI--------------KSRQIKCFRCQGFKHI 1431
P + + S P T + ++R I+C RC+G+ H+
Sbjct: 349 AAAPSSSNNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASSGRTRDIQCLRCKGYGHV 408
Query: 1432 ASEGPNKRVMVVLANGDIESASSSDNEM-------------SPLEDCSDVEVKEPVHGDL 1572
+ P+ RVM+V A+G SAS D E +P +D + + H +
Sbjct: 409 RKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAPHQDEEHIGAEAAEHYES 468
Query: 1573 LVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKL 1752
LV +R LS Q + ++ QR +F +C +K++ C +IID SC N+AS +VEKL L
Sbjct: 469 LVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALST 527
Query: 1753 QKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1932
Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV PM A I LGRPW D D
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSIFLGRPWQFDKD 587
Query: 1933 A 1935
+
Sbjct: 588 S 588
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 180 bits (456), Expect(3) = 1e-99
Identities = 84/118 (71%), Positives = 98/118 (83%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 1292 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRT 1351
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPH+EFA NR +HS TK PF+IVY P++L PLP
Sbjct: 1352 LSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLP 1409
Score = 133 bits (334), Expect(3) = 1e-99
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1206 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1265
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS MVHFI HKTDDASH+A
Sbjct: 1266 VVVDRFSKMVHFIPCHKTDDASHIA 1290
Score = 101 bits (251), Expect(3) = 1e-99
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
I ++ALS RY LL+ LD K+FG E IK+ YA + DF++ CK T + +DGF+F
Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1159
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+
Sbjct: 1160 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202
Score = 159 bits (403), Expect(2) = 4e-39
Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 27/292 (9%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKPKE 1320
N+EI D+V+ Y M L H A K E++++ + +W+ P +
Sbjct: 266 NREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPLAGRT 325
Query: 1321 DAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHIASEGP 1446
+ S K + + P + + + R ++C RC+GF H+ + P
Sbjct: 326 ASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCP 385
Query: 1447 NKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTRRALSI 1599
+KRV+VV +G+ SAS D++ L + + P H + L+ +R LS
Sbjct: 386 SKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSA 445
Query: 1600 QPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKL 1779
Q + ++ QR +F +C VK++ C +IID SC N+AS+ +VEKL L + HP Y +
Sbjct: 446 QMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHSYYI 504
Query: 1780 QLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1935
Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW D D+
Sbjct: 505 QWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 556
Score = 31.2 bits (69), Expect(2) = 4e-39
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
D +K VM RF+ S+Y +DL +LQ L Q E ++A MAR
Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQ---------------------EETEDAAMAR 260
Query: 1130 FIAGTKR 1150
F+ G R
Sbjct: 261 FLGGLNR 267
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 182 bits (462), Expect(3) = 5e-99
Identities = 87/118 (73%), Positives = 98/118 (83%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 654 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 713
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYN HS TK PFEIVY P++L PLP
Sbjct: 714 LSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 771
Score = 128 bits (322), Expect(3) = 5e-99
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 568 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 627
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 628 VVVDRFSKMAHFIPCHKSDDATHVA 652
Score = 101 bits (252), Expect(3) = 5e-99
Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF + C + T + +GF+F
Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVF 521
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K
Sbjct: 522 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 567
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 180 bits (456), Expect(3) = 8e-99
Identities = 86/118 (72%), Positives = 97/118 (82%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTK LFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRT 1400
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L P P
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHP 1458
Score = 128 bits (322), Expect(3) = 8e-99
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339
Score = 103 bits (256), Expect(3) = 8e-99
Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF CK+ T + +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVF 1208
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254
Score = 154 bits (389), Expect = 1e-34
Identities = 98/301 (32%), Positives = 146/301 (48%), Gaps = 36/301 (11%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKPKE 1320
N+EI D++ Y + L H A K E++++ + +W +
Sbjct: 289 NREIQDILTYKEYNSINHLFHLACKAEREVQGRRASFRTNISAGRASSWTSSNAAAPSTR 348
Query: 1321 DA-----KSKLSISIPKDRP--------------ETNPLIKS----RQIKCFRCQGFKHI 1431
A +KL S P +T+ + S R I+C RC+G+ H+
Sbjct: 349 AAAPSSSSNKLRPSTTNSTPCPSEPTRGVAATPSKTSSSVASSGRTRDIQCLRCKGYGHV 408
Query: 1432 ASEGPNKRVMVVLANGDIESASSSDNEM-------------SPLEDCSDVEVKEPVHGDL 1572
+ P+ RVM+V A+G SAS D E +P +D + + H +
Sbjct: 409 RKDCPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAPHQDEEHIGAEAAEHYES 468
Query: 1573 LVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKL 1752
LV +R LS Q + ++ QR +F +C +K++ C +IID SC N+AS +VEKL L
Sbjct: 469 LVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALST 527
Query: 1753 QKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1932
Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV PM A +LLGRPW D D
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587
Query: 1933 A 1935
+
Sbjct: 588 S 588
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 196 bits (498), Expect(3) = 1e-98
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFFKEIVRLHG+PR+IVSDRDAKFLS+F +TLW K+GTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 910 LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 969
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L TLLR ++KKN+K+WE CLPHVEFAYNR VHS T SPFEIVY FN LTPL+L P+P
Sbjct: 970 LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLLPMP 1027
Score = 128 bits (321), Expect(3) = 1e-98
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + + CG CI C+QAKS+V PHGLYTPLP+P PW DISMDFVLGLP+ ++G+D +F
Sbjct: 824 MRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVF 883
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI K DDA HVA
Sbjct: 884 VVVDRFSKMAHFIPCKKVDDACHVA 908
Score = 86.7 bits (213), Expect(3) = 1e-98
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = -3
Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
RHDGFLF+ NKLCVP C++RE LV ESH GGLMGHFGV KTL + QEHF+
Sbjct: 771 RHDGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFF 820
Score = 201 bits (512), Expect(2) = 2e-63
Identities = 118/272 (43%), Positives = 164/272 (60%), Gaps = 10/272 (3%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNW-----KDNKIP 1305
N EI DVVEL YV +++LLH+A++VE+QIK N + NW K+
Sbjct: 217 NPEIRDVVELQEYVVLDDLLHRALRVEQQIKRRSATRRNSPNT-YNQNWANRSKKEGGNS 275
Query: 1306 FKPKEDAKSKLSISIPKDRPETNPLIKS-----RQIKCFRCQGFKHIASEGPNKRVMVVL 1470
F+P + S + + N S R IKCF+C G HIASE P +R M++
Sbjct: 276 FRPAATSPYGKSATPSVGGSKHNTSTSSSNTGTRNIKCFKCLGRGHIASECPTRRTMIMK 335
Query: 1471 ANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFHP 1650
A+G+I +S++E+S E + +E + GD+L+ RR L Q + D+ QRE+IFH
Sbjct: 336 ADGEI----TSESEISEEEVEEEEYEEEAMQGDMLMVRRLLGNQMQPL-DDNQRENIFHT 390
Query: 1651 RCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRV 1830
RC + K+C LI+D SCTNVAS+ LV KLNL+ + HP+ YKLQ L++ EVKV +QV V
Sbjct: 391 RCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEVKVTQQVEV 450
Query: 1831 PFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1926
+IG+Y D+V+CDV PM A H+LLGRPW D
Sbjct: 451 CLTIGRYNDKVLCDVVPMEATHVLLGRPWQYD 482
Score = 70.9 bits (172), Expect(2) = 2e-63
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
EMK VM KR++ + Y + + KLQGL QG++ VE YYK+M++ ++RANIE D E TMARF
Sbjct: 153 EMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEEDSEDTMARF 212
Query: 1133 IAG 1141
+ G
Sbjct: 213 LNG 215
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 183 bits (464), Expect(3) = 2e-98
Identities = 87/118 (73%), Positives = 99/118 (83%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1237 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1296
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
++T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP
Sbjct: 1297 VSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1354
Score = 128 bits (322), Expect(3) = 2e-98
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1210
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 1211 VVVDRFSKMAHFIPCHKSDDATHVA 1235
Score = 99.0 bits (245), Expect(3) = 2e-98
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Frame = -3
Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLFREN 772
DALS RY +LS LD K+FG E IKE YA + DF + CK+ T + +GF+FR N
Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107
Query: 771 KLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
KLC+P ++ L++E+HGGGLMGHFGV KT + +H + K
Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150
Score = 114 bits (285), Expect(2) = 5e-33
Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN--------NPWRPNWKDN 1296
N+EI D++ Y + L H A K E++++ + N RP+ N
Sbjct: 289 NREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAAAPSSSSNKLRPS-TTN 347
Query: 1297 KIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLAN 1476
P P E + ++ + K L ++R I+C RC+G+ H+ + P+ RVM+V A+
Sbjct: 348 STPC-PSEPTRG-VAATPSKSSSSVASLGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRAD 405
Query: 1477 GDIESASSSDNEM-------------SPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDG 1617
G SAS D E +P +D ++ + H + LV +R LS Q +
Sbjct: 406 GGYSSASDLDEETYALLATNNAGEGDAPHQDEEHIKAEAAEHYESLVVQRVLSAQMER-A 464
Query: 1618 DEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDC 1797
++ QR +F +C +K++ C +IID SC N+AS +VEKL L Q HP+ Y +Q LN
Sbjct: 465 EQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSS 524
Query: 1798 GE 1803
G+
Sbjct: 525 GK 526
Score = 56.2 bits (134), Expect(2) = 5e-33
Identities = 32/79 (40%), Positives = 46/79 (58%)
Frame = +2
Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R
Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271
Query: 1094 NIEGDKEATMARFIAGTKR 1150
+ + +A MARF+ R
Sbjct: 272 GLVENDDAGMARFMGELNR 290
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 184 bits (467), Expect(3) = 2e-98
Identities = 88/118 (74%), Positives = 99/118 (83%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458
Score = 126 bits (317), Expect(3) = 2e-98
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = -1
Query: 650 KRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIFV 471
+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IFV
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315
Query: 470 VVDRFS*MVHFILSHKTDDASHVA 399
VVDRFS M HFI HK+DDA+HVA
Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVA 1339
Score = 99.8 bits (247), Expect(3) = 2e-98
Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF + CK+ T + +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++ L++E+HGGGLMGHFGV K + +HF+ K
Sbjct: 1209 RANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254
Score = 147 bits (371), Expect(2) = 8e-44
Identities = 95/303 (31%), Positives = 141/303 (46%), Gaps = 38/303 (12%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKPKE 1320
N+EI D++ Y + L H A K E++++ + +W +
Sbjct: 289 NREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAGCASSWTSSNAAAPSTR 348
Query: 1321 DAKSKLSISIPKDRPETNPLI-------------------------KSRQIKCFRCQGFK 1425
A S S K RP T ++R I+C RC+G+
Sbjct: 349 AAAP--SCSSNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASSGRTRDIQCLRCKGYG 406
Query: 1426 HIASEGPNKRVMVVLANGDIESASSSDNEM-------------SPLEDCSDVEVKEPVHG 1566
H+ + P+ RVM+V A+G S D E +P +D + + H
Sbjct: 407 HVRKDCPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGDAPHQDEEHIRAEAAEHY 466
Query: 1567 DLLVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNL 1746
+ LV +R LS Q + ++ Q +F +C +K++ C +IID SC N+AS +VEKL L
Sbjct: 467 ESLVVQRVLSAQMER-AEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLAL 525
Query: 1747 KLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1926
Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV PM A +LLGRPW D
Sbjct: 526 STQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFD 585
Query: 1927 *DA 1935
D+
Sbjct: 586 KDS 588
Score = 59.3 bits (142), Expect(2) = 8e-44
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +2
Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R
Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271
Query: 1094 NIEGDKEATMARFIAGTKR 1150
+ + +A MARF+ G R
Sbjct: 272 GLVENDDAGMARFMGGLNR 290
>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
Length = 1191
Score = 171 bits (434), Expect(3) = 4e-98
Identities = 83/118 (70%), Positives = 97/118 (82%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1048 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1107
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP
Sbjct: 1108 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1165
Score = 127 bits (319), Expect(3) = 4e-98
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = -3
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778
+ +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+
Sbjct: 832 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 891
Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY
Sbjct: 892 ENKLCVPNCSLRELFVREAHYGGLMGHFGVPKTLEILSEHFY 933
Score = 110 bits (275), Expect(3) = 4e-98
Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 25/111 (22%)
Frame = -1
Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDIS----------------- 528
SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDIS
Sbjct: 936 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVF 995
Query: 527 --------MDFVLGLPRNRHGRDLIFVVVDRFS*MVHFILSHKTDDASHVA 399
MDF+LGLPR ++G+D IFVVVDRFS M FI KT+DASHVA
Sbjct: 996 NTPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVA 1046
Score = 194 bits (493), Expect(2) = 3e-60
Identities = 113/273 (41%), Positives = 160/273 (58%), Gaps = 11/273 (4%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------W--K 1290
N EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN W +
Sbjct: 280 NTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKPWSTQ 333
Query: 1291 DNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVV 1467
+ K P KP++D K K+ P+++ S I+C +C G H+ E P++R +++
Sbjct: 334 EGKAPSKPQDDRGKGKVEEGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRRNILL 391
Query: 1468 LANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKSDGDEEQREHIFH 1647
NG+ ES S E + +++ P G + V RR ++I S DE QRE++FH
Sbjct: 392 RENGEYESEKSEGEEEEREGVSEEDDLELPNDGIIGVVRRIMTINLGSV-DEGQRENLFH 450
Query: 1648 PRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVR 1827
RC +K K +IID SC NV S+ LV+KL + K P Y+LQ LNDCGEVKVNKQ
Sbjct: 451 TRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRPTPYRLQWLNDCGEVKVNKQCM 510
Query: 1828 VPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1926
+ F++G+Y DE++CDV PM A H+LLGRPW D
Sbjct: 511 ISFNVGRYEDEILCDVVPMQACHVLLGRPWQYD 543
Score = 67.4 bits (163), Expect(2) = 3e-60
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ARF
Sbjct: 216 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 275
Query: 1133 IAG 1141
+ G
Sbjct: 276 LNG 278
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 183 bits (464), Expect(3) = 7e-98
Identities = 84/118 (71%), Positives = 100/118 (84%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1372 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1431
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++K NIK WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P
Sbjct: 1432 LSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1489
Score = 125 bits (315), Expect(3) = 7e-98
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1345
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA++VA
Sbjct: 1346 VVVDRFSKMAHFIPCHKSDDAANVA 1370
Score = 99.8 bits (247), Expect(3) = 7e-98
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = -3
Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGF 787
D + +DALS RY +LS LD K+FG E IK+ Y + DF + C++ T + ++GF
Sbjct: 1178 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1237
Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
+FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+
Sbjct: 1238 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1282
Score = 135 bits (341), Expect = 5e-29
Identities = 93/298 (31%), Positives = 140/298 (46%), Gaps = 36/298 (12%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP--------- 1281
N++I ++E Y + L H A K E++++ + + W P
Sbjct: 322 NRDIQTILEYKDYXTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRP 381
Query: 1282 -----------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKH 1428
+ +D + AKS S T ++ ++ C RC+G H
Sbjct: 382 PASAPPVSAASSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGH 441
Query: 1429 IASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG------------DL 1572
A E P+KRVM++ +G +SAS D E L + V + +
Sbjct: 442 YARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVADTAQETQYMAADYADRYES 501
Query: 1573 LVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKL 1752
LV +R LS+Q + ++ QR ++FH + VK++ +IID SC N+AS +VEKL+L
Sbjct: 502 LVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTT 560
Query: 1753 QKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1926
+ HP Y +Q N+ G+VKV + VRV FSI Y D V CDV PM A +LLGRPW D
Sbjct: 561 RPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQFD 618
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 182 bits (461), Expect(3) = 1e-97
Identities = 83/118 (70%), Positives = 100/118 (84%)
Frame = -2
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1369 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1428
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++K N+K WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P
Sbjct: 1429 LSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1486
Score = 125 bits (315), Expect(3) = 1e-97
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = -1
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1342
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA++VA
Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVA 1367
Score = 99.8 bits (247), Expect(3) = 1e-97
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = -3
Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGF 787
D + +DALS RY +LS LD K+FG E IK+ Y + DF + C++ T + ++GF
Sbjct: 1175 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1234
Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
+FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+
Sbjct: 1235 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1279
Score = 135 bits (339), Expect = 9e-29
Identities = 93/298 (31%), Positives = 140/298 (46%), Gaps = 36/298 (12%)
Frame = +1
Query: 1141 NKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP--------- 1281
N++I ++E Y + L H A K E++++ + + W P
Sbjct: 319 NRDIQTILEYKDYNTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRP 378
Query: 1282 -----------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKH 1428
+ +D + AKS S T ++ ++ C RC+G H
Sbjct: 379 PASAPPVSAANSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGH 438
Query: 1429 IASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG------------DL 1572
A E P+KRVM++ +G +SAS D E L + V + +
Sbjct: 439 YARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVXDTAQETQYMAADYADRYES 498
Query: 1573 LVTRRALSIQPKSDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKL 1752
LV +R LS+Q + ++ QR ++FH + VK++ +IID SC N+AS +VEKL+L
Sbjct: 499 LVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTT 557
Query: 1753 QKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1926
+ HP Y +Q N+ G+VKV + VRV FSI Y D V CDV PM A +LLGRPW D
Sbjct: 558 RPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQFD 615