BLASTX nr result
ID: Akebia25_contig00051702
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00051702
(258 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 52 3e-07
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D... 55 6e-07
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 54 6e-07
ref|XP_004150929.1| PREDICTED: uncharacterized protein LOC101213... 53 1e-06
dbj|BAA22288.1| polyprotein [Oryza australiensis] 52 2e-06
ref|XP_004153206.1| PREDICTED: uncharacterized protein LOC101203... 51 3e-06
emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group] 52 3e-06
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 49 4e-06
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 50 4e-06
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 50 4e-06
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 54 5e-06
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 50 6e-06
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 51 6e-06
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 51 6e-06
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 52 6e-06
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 51 6e-06
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 54 1e-05
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 52.4 bits (124), Expect(2) = 3e-07
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +2
Query: 107 TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
TL SD GG+Y+ S+ DYL + I SQ +AP PQ+N S RRN+TLLD+
Sbjct: 566 TLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDM 615
Score = 27.7 bits (60), Expect(2) = 3e-07
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYG+ LLHHKSE+ K
Sbjct: 531 SRYGHVYLLHHKSESFEK 548
>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 55.5 bits (132), Expect(2) = 6e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS E LDYLK+ IVSQ T P PQ N + RRN+TLLD+
Sbjct: 539 SDRGGEYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLDM 585
Score = 23.5 bits (49), Expect(2) = 6e-07
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ HKS+ K
Sbjct: 501 SRYGYIYLIKHKSDTFEK 518
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 28/47 (59%), Positives = 33/47 (70%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS D+L++ IVSQ T PG PQ N S RRNQTLLD+
Sbjct: 240 SDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQGNGVSERRNQTLLDM 286
Score = 24.6 bits (52), Expect(2) = 6e-07
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 4 RYGYTNLLHHKSENILKSSK 63
RYGY L+ HK E+ KS +
Sbjct: 203 RYGYVYLMKHKLESFEKSKE 222
>ref|XP_004150929.1| PREDICTED: uncharacterized protein LOC101213227 [Cucumis sativus]
Length = 513
Score = 52.8 bits (125), Expect(2) = 1e-06
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+Y+ DYL +N I SQ +AP PQ+N S RRNQTLLD+
Sbjct: 340 SDRGGEYMDLRFRDYLIENGIQSQLSAPSTPQQNGVSERRNQTLLDM 386
Score = 25.4 bits (54), Expect(2) = 1e-06
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYG+ L+HHKS ++ K
Sbjct: 302 SRYGHIYLIHHKSNSLEK 319
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 52.0 bits (123), Expect(2) = 2e-06
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+Y+S E ++LKD IV Q T PG PQ N S RRN+TLLD+
Sbjct: 564 SDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDM 610
Score = 25.4 bits (54), Expect(2) = 2e-06
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ HKSE+ K
Sbjct: 526 SRYGYIYLMRHKSESFEK 543
>ref|XP_004153206.1| PREDICTED: uncharacterized protein LOC101203928, partial [Cucumis
sativus]
Length = 486
Score = 51.2 bits (121), Expect(2) = 3e-06
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+Y+ DYL +N I SQ +AP PQ+N S RRN+TLLD+
Sbjct: 367 SDRGGEYMDLRFQDYLIENGIKSQLSAPSTPQQNGVSERRNRTLLDM 413
Score = 25.4 bits (54), Expect(2) = 3e-06
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYG+ L+HHKS ++ K
Sbjct: 329 SRYGHIYLIHHKSNSLEK 346
>emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group]
Length = 448
Score = 52.0 bits (123), Expect(2) = 3e-06
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = +2
Query: 47 F*KVQRIHTXXXXXXXXFI*TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS 226
F K + H I L SD GG+YL+ E ++LK+ IV Q T PG PQ N S
Sbjct: 120 FEKFKEFHNEVQNHLDKTIKYLRSDRGGEYLTLEFGNHLKEGGIVPQLTPPGMPQWNGVS 179
Query: 227 *RRNQTLLDV 256
RRN+TLLD+
Sbjct: 180 ERRNRTLLDM 189
Score = 24.6 bits (52), Expect(2) = 3e-06
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 1 TRYGYTNLLHHKSE 42
+RYGY L+ HKSE
Sbjct: 105 SRYGYVYLMRHKSE 118
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 49.3 bits (116), Expect(2) = 4e-06
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS E ++LK I Q+T PG PQ N S RRN+TLLD+
Sbjct: 523 SDCGGEYLSLEFGNHLKKCGIAPQFTPPGTPQWNGVSERRNRTLLDM 569
Score = 26.9 bits (58), Expect(2) = 4e-06
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILKSSK 63
+RYGY L+ HKSE+ K K
Sbjct: 485 SRYGYVYLMRHKSESFEKFKK 505
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 50.4 bits (119), Expect(2) = 4e-06
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +2
Query: 41 KTF*KVQRIHTXXXXXXXXFI*TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENS 220
++F K + H I L SD GG+Y S E ++LK+ IV Q T PG PQ N
Sbjct: 88 ESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNG 147
Query: 221 AS*RRNQTLLDV 256
S RRN+TLLD+
Sbjct: 148 VSKRRNRTLLDM 159
Score = 25.8 bits (55), Expect(2) = 4e-06
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ HKSE+ K
Sbjct: 75 SRYGYVYLMRHKSESFEK 92
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 50.4 bits (119), Expect(2) = 4e-06
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +2
Query: 41 KTF*KVQRIHTXXXXXXXXFI*TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENS 220
++F K + H I L SD GG+Y S E ++LK+ IV Q T PG PQ N
Sbjct: 88 ESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNG 147
Query: 221 AS*RRNQTLLDV 256
S RRN+TLLD+
Sbjct: 148 VSKRRNRTLLDM 159
Score = 25.8 bits (55), Expect(2) = 4e-06
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ HKSE+ K
Sbjct: 75 SRYGYVYLMRHKSESFEK 92
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 53.5 bits (127), Expect(2) = 5e-06
Identities = 33/72 (45%), Positives = 40/72 (55%)
Frame = +2
Query: 41 KTF*KVQRIHTXXXXXXXXFI*TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENS 220
+TF K + I L SD GGKYLS E ++LK+ IV Q T PG PQ N
Sbjct: 248 ETFEKFKEFQNEVQNHLGKTIKYLRSDRGGKYLSLEFGNHLKECRIVPQLTLPGTPQWNG 307
Query: 221 AS*RRNQTLLDV 256
S RRN+TLLD+
Sbjct: 308 VSERRNRTLLDM 319
Score = 22.3 bits (46), Expect(2) = 5e-06
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ KSE K
Sbjct: 235 SRYGYVYLMRQKSETFEK 252
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 49.7 bits (117), Expect(2) = 6e-06
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +2
Query: 41 KTF*KVQRIHTXXXXXXXXFI*TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENS 220
++F K + H I L SD GG+YLS E ++LK+ IV Q T PG PQ N
Sbjct: 515 ESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNG 574
Query: 221 AS*RRNQTLLDV 256
S RN+TLLD+
Sbjct: 575 VSEWRNRTLLDM 586
Score = 25.8 bits (55), Expect(2) = 6e-06
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ HKSE+ K
Sbjct: 502 SRYGYVYLMRHKSESFEK 519
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 50.8 bits (120), Expect(2) = 6e-06
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS E ++LK+ IV Q T PG PQ N S RRN+TLLD+
Sbjct: 656 SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDM 702
Score = 24.6 bits (52), Expect(2) = 6e-06
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILKSSK 63
+R GY L+ HKSE++ K K
Sbjct: 618 SRCGYVYLMRHKSESVEKFKK 638
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 50.8 bits (120), Expect(2) = 6e-06
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS E ++LK+ IV Q T PG PQ N S RRN+TLLD+
Sbjct: 656 SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDM 702
Score = 24.6 bits (52), Expect(2) = 6e-06
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILKSSK 63
+R GY L+ HKSE++ K K
Sbjct: 618 SRCGYVYLMRHKSESVEKFKK 638
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 52.4 bits (124), Expect(2) = 6e-06
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS D+L++ IVSQ T PG PQ N S RRN+TLLD+
Sbjct: 208 SDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDM 254
Score = 23.1 bits (48), Expect(2) = 6e-06
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 1 TRYGYTNLLHHKSEN 45
+RYGY L+ HKS++
Sbjct: 170 SRYGYVYLMKHKSKS 184
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 50.8 bits (120), Expect(2) = 6e-06
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +2
Query: 116 SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
SD GG+YLS E ++LK+ IV Q T PG PQ N S RRN+TLLD+
Sbjct: 449 SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDM 495
Score = 24.6 bits (52), Expect(2) = 6e-06
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 1 TRYGYTNLLHHKSENILK 54
+RYGY L+ HKS++ K
Sbjct: 411 SRYGYVYLMRHKSDSFEK 428
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 53.9 bits (128), Expect(2) = 1e-05
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +2
Query: 98 FI*TL*SD*GGKYLSSEILDYLKDNEIVSQWTAPGKPQENSAS*RRNQTLLDV 256
+I TL SD GG+Y+S E + +L + I SQ +APG PQ+N + RRN+TL+++
Sbjct: 882 YIKTLRSDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEM 934
Score = 20.8 bits (42), Expect(2) = 1e-05
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 1 TRYGYTNLLHHKSE 42
+RYGY LL KSE
Sbjct: 850 SRYGYIYLLCRKSE 863