BLASTX nr result
ID: Akebia25_contig00045987
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00045987
(461 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera] 154 3e-40
gb|ABG22123.1| polyprotein [Prunus avium] 152 5e-36
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 144 3e-35
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 141 7e-35
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 142 7e-35
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 142 9e-35
emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group] 140 1e-34
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 141 2e-34
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 140 3e-34
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 140 4e-34
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group] 137 9e-34
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 134 1e-33
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 139 1e-33
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 137 1e-33
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 137 2e-33
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 140 2e-33
gb|ABG22121.1| polyprotein [Solanum melongena] 142 3e-33
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 135 6e-33
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 136 8e-33
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 135 2e-32
>emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]
Length = 734
Score = 154 bits (388), Expect(2) = 3e-40
Identities = 72/101 (71%), Positives = 85/101 (84%)
Frame = -2
Query: 304 E*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKPGKIYWQVVKWILRYLKGTAE 125
E MSHV YAS VGS+MYV+VCTR + H VSVV+RYMD P KI+WQ VKWILR+L+GT+
Sbjct: 580 EYMSHVPYASTVGSIMYVMVCTRLEKSHAVSVVSRYMDHPEKIHWQAVKWILRHLRGTSH 639
Query: 124 VGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTIC 2
VGL+YD++ D S+ VGYVDFDYVGDLDRRRSLT YVFT+C
Sbjct: 640 VGLVYDKNFDISRGIVGYVDFDYVGDLDRRRSLTRYVFTLC 680
Score = 37.4 bits (85), Expect(2) = 3e-40
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR V LY+S KYIEKVL+ FGMQ SK
Sbjct: 550 DRKVWKLYLSWKKYIEKVLERFGMQGSK 577
>gb|ABG22123.1| polyprotein [Prunus avium]
Length = 276
Score = 152 bits (383), Expect(2) = 5e-36
Identities = 73/120 (60%), Positives = 89/120 (74%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLA HF+LSA MS T+EE M+ + YAS VGSLMY +VCTRPDI VS+V+RYM P
Sbjct: 78 PLAPHFKLSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNP 137
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +WQ VKWILRY+ GT +VGLL+ + + + VGYVD DY GDLD+RRS T +VFTI
Sbjct: 138 GKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAGDLDKRRSTTGFVFTI 197
Score = 25.0 bits (53), Expect(2) = 5e-36
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDS 379
DR + + Q +Y++KVL FGM ++
Sbjct: 45 DRAKGKISLCQKQYLKKVLQRFGMNEN 71
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 144 bits (362), Expect(2) = 3e-35
Identities = 70/120 (58%), Positives = 89/120 (74%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLAAHFRLS+ + ++ ++E MS V Y+S VGSLMY +VC RPD+ H +SVVNRYM P
Sbjct: 1061 PLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANP 1120
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL+GT+ L ++RS D VGYVD D+ GDLDRRRS+T YVFTI
Sbjct: 1121 GKEHWKAVQWIFRYLRGTSSACLQFERSRD---GLVGYVDSDFAGDLDRRRSITGYVFTI 1177
Score = 30.4 bits (67), Expect(2) = 3e-35
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
+R LY+SQ YIEKVL F M D+K
Sbjct: 1029 ERHSGKLYLSQKGYIEKVLRRFNMHDAK 1056
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 141 bits (356), Expect(2) = 7e-35
Identities = 70/120 (58%), Positives = 88/120 (73%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLAAHFRLS+ + Q++ +E MS V Y+S VGSLMY ++C+RPD+ H +SVV+RYM P
Sbjct: 938 PLAAHFRLSSDLCPQSDYNIEYMSRVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMANP 997
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL GT+ L + RS D VGYVD D+ GDLDRRRSLT YVFTI
Sbjct: 998 GKEHWKDVQWIFRYLHGTSSACLQFGRSRD---GLVGYVDSDFAGDLDRRRSLTGYVFTI 1054
Score = 31.6 bits (70), Expect(2) = 7e-35
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
+R D LY+SQ YIEKV F M D+K
Sbjct: 906 ERHSDKLYLSQKGYIEKVFRRFNMHDAK 933
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 142 bits (359), Expect(2) = 7e-35
Identities = 71/120 (59%), Positives = 89/120 (74%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLAAHFRLS+ + Q++ ++E MS V Y+SVVGSLMY +VC+RPD+ H +SVV+RYM P
Sbjct: 895 PLAAHFRLSSDLCPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHALSVVSRYMANP 954
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL GT+ L + RS D VGYVD D+ GDLDRRRSL YVFTI
Sbjct: 955 GKEHWKAVQWIFRYLCGTSSACLQFGRSRD---GLVGYVDSDFAGDLDRRRSLAGYVFTI 1011
Score = 30.4 bits (67), Expect(2) = 7e-35
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
+R LY+SQ YIEKVL F M D+K
Sbjct: 863 ERHSGKLYLSQKGYIEKVLRRFNMHDAK 890
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 142 bits (358), Expect(2) = 9e-35
Identities = 71/120 (59%), Positives = 90/120 (75%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLAAHFRLS+ + Q++ ++E MS V Y SVVGSLMY +VC+R D+ H +SVV+RYM P
Sbjct: 968 PLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANP 1027
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+VV+WI +YL+GT+ L + RS D VGYVD D+ GDLDRRRSLT YVFTI
Sbjct: 1028 GKEHWKVVQWIFKYLRGTSSACLQFGRSRD---GLVGYVDSDFAGDLDRRRSLTGYVFTI 1084
Score = 30.4 bits (67), Expect(2) = 9e-35
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
+R LY+SQ YIEKVL F M D+K
Sbjct: 936 ERHSGKLYLSQKGYIEKVLRRFNMHDAK 963
>emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group]
Length = 375
Score = 140 bits (354), Expect(2) = 1e-34
Identities = 68/120 (56%), Positives = 88/120 (73%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+ +HF+LSA T+E+VE MS V Y+S VGSLMY +VC+RPD+ H +S+V+RYM P
Sbjct: 146 PIVSHFKLSALQCASTDEDVEYMSRVPYSSDVGSLMYAMVCSRPDLSHAMSLVSRYMANP 205
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL+GTA+ L + R T K VGYVD D+ DLD+RRSLT YVFTI
Sbjct: 206 GKEHWKAVQWIFRYLRGTADACLKFGR---TDKGLVGYVDSDFAADLDKRRSLTDYVFTI 262
Score = 31.6 bits (70), Expect(2) = 1e-34
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL F M D+K
Sbjct: 114 DRNSGLLFLSQQSYIKKVLQRFNMHDAK 141
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 141 bits (356), Expect(2) = 2e-34
Identities = 68/124 (54%), Positives = 88/124 (70%)
Frame = -2
Query: 376 ICEFPLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRY 197
+ P+A HF+LS T+E+VE MS V Y+S VGSLMY +VC+RPD+ H +S+V+RY
Sbjct: 758 LVSIPIAPHFKLSVLQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRY 817
Query: 196 MDKPGKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSY 17
M PGK +W+ V+WI RYL+GTA+ L + R T K VGYVD D+ DLD+RRSLT Y
Sbjct: 818 MANPGKEHWKAVQWIFRYLRGTADACLKFGR---TDKGLVGYVDSDFAADLDKRRSLTGY 874
Query: 16 VFTI 5
VFTI
Sbjct: 875 VFTI 878
Score = 29.6 bits (65), Expect(2) = 2e-34
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+ VL F M D+K
Sbjct: 730 DRNSGLLFLSQQSYIKNVLQRFNMHDAK 757
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 140 bits (353), Expect(2) = 3e-34
Identities = 69/119 (57%), Positives = 88/119 (73%)
Frame = -2
Query: 361 LAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKPG 182
LAAHFRLS+ + Q+ ++E MS V Y+S V SLMY +VC+RPD+ H +SVV+RYM PG
Sbjct: 999 LAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPG 1058
Query: 181 KIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
K +W+ V+WI RYL+GT+ L + RSSD VGYVD D+ GDLDRRRSLT YVFT+
Sbjct: 1059 KEHWKAVQWIFRYLRGTSSACLQFGRSSD---GLVGYVDSDFAGDLDRRRSLTGYVFTV 1114
Score = 30.4 bits (67), Expect(2) = 3e-34
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
+R LY+SQ YIEKVL F M D+K
Sbjct: 966 ERHSGKLYLSQKCYIEKVLHRFNMHDAK 993
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 140 bits (353), Expect(2) = 4e-34
Identities = 69/120 (57%), Positives = 88/120 (73%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLAAHFRLS+ + Q++ ++E MS V Y+S VGSLMY +VC+RPD+ H +SVV+RYM P
Sbjct: 1296 PLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANP 1355
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL+GT+ L + RS D VGYVD D+ GDLDR RSL YVFTI
Sbjct: 1356 GKEHWKAVQWIFRYLRGTSSACLQFGRSRD---GLVGYVDSDFAGDLDRGRSLAGYVFTI 1412
Score = 30.0 bits (66), Expect(2) = 4e-34
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 441 LYVSQMKYIEKVLDLFGMQDSK 376
LY+SQ YIEKVL F M D+K
Sbjct: 1270 LYLSQKGYIEKVLRRFNMHDAK 1291
>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
Length = 293
Score = 137 bits (346), Expect(2) = 9e-34
Identities = 66/119 (55%), Positives = 85/119 (71%)
Frame = -2
Query: 361 LAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKPG 182
+A HF+LSA T+E+VE MS V Y+S VGSLMY +VC+RPD+ H +S+V+RYM PG
Sbjct: 51 IAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPG 110
Query: 181 KIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
K +W+ + WI RYL+GT + L + R T K VGYVD D+ DLD+RRSLT YVFTI
Sbjct: 111 KEHWKAIHWIFRYLRGTTDACLKFGR---TDKGLVGYVDSDFAADLDKRRSLTGYVFTI 166
Score = 31.6 bits (70), Expect(2) = 9e-34
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL F M D+K
Sbjct: 18 DRNSGLLFLSQQSYIKKVLQRFNMHDAK 45
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 134 bits (338), Expect(2) = 1e-33
Identities = 66/120 (55%), Positives = 85/120 (70%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLA HF+ T+EEVE M V Y+SVVGSLMY +VCTRPD+ VSVV+R+M P
Sbjct: 1389 PLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNP 1448
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ VKWI+RYLKG++ V L+Y + D S VG+ D D+ GDL +RRSLT Y+FT+
Sbjct: 1449 GKAHWEAVKWIMRYLKGSSSVCLVYG-NGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTL 1507
Score = 34.3 bits (77), Expect(2) = 1e-33
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR LYVSQ KYIEK++ F M SK
Sbjct: 1357 DRDAGLLYVSQQKYIEKLMQAFHMDHSK 1384
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 139 bits (349), Expect(2) = 1e-33
Identities = 68/120 (56%), Positives = 86/120 (71%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+A HF+LSA T+ E+E MS V Y+S VGSLMY +VC+RPD+ + +S+V+RYM P
Sbjct: 1090 PIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNP 1149
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+VV+WI RYL+GT L + R T K +GYVD DY DLDRRRSLT YVFTI
Sbjct: 1150 GKEHWRVVQWIFRYLRGTTYSCLKFGR---TDKGLIGYVDSDYAADLDRRRSLTGYVFTI 1206
Score = 30.0 bits (66), Expect(2) = 1e-33
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL F MQ++K
Sbjct: 1058 DRKSGLLFLSQHNYIKKVLQRFNMQNAK 1085
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 137 bits (345), Expect(2) = 1e-33
Identities = 67/120 (55%), Positives = 86/120 (71%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+A HF+LSA T+E+VE MS V Y+S VGSLMY +VC+ PD+ H +S+V+RYM P
Sbjct: 1079 PIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANP 1138
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL+GTA+ L + R K VGYVD D+ DLD+RRSLT YVFTI
Sbjct: 1139 GKEHWKAVQWIFRYLRGTADACLKFGR---IDKGLVGYVDSDFAADLDKRRSLTGYVFTI 1195
Score = 31.6 bits (70), Expect(2) = 1e-33
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL F M D+K
Sbjct: 1047 DRNSGLLFLSQQSYIKKVLQRFNMHDAK 1074
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 137 bits (346), Expect(2) = 2e-33
Identities = 69/120 (57%), Positives = 87/120 (72%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P AA+ L+A + Q+EEE E MS V YAS VGSLMY +VCTRPD+ H VSVV+R+M +P
Sbjct: 1065 PSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQP 1124
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
G+ +WQ VK I RYL+GT++VGL+Y DT GY D DY GD+D RRS+T YVFT+
Sbjct: 1125 GREHWQAVKRIFRYLRGTSDVGLIY--GGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTL 1182
Score = 30.4 bits (67), Expect(2) = 2e-33
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL FGM SK
Sbjct: 1033 DRERRKLFLSQRSYIQKVLARFGMSSSK 1060
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 140 bits (354), Expect(2) = 2e-33
Identities = 69/120 (57%), Positives = 88/120 (73%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+A HF+LSA T+E+VE MS V Y+SVVGSLMY +VC+RP + H +S+V+RYM P
Sbjct: 1025 PIAPHFKLSALQCTSTDEDVEYMSRVPYSSVVGSLMYAMVCSRPVLSHAMSLVSRYMANP 1084
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL+GTA+ L + R T K VGYVD D+ DLD+RRSLT YVFTI
Sbjct: 1085 GKEHWKAVQWIFRYLRGTADACLKFGR---TDKGLVGYVDSDFAADLDKRRSLTGYVFTI 1141
Score = 27.3 bits (59), Expect(2) = 2e-33
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 441 LYVSQMKYIEKVLDLFGMQDSK 376
L++SQ YI+KVL F + D+K
Sbjct: 999 LFLSQQSYIKKVLQRFNIHDAK 1020
>gb|ABG22121.1| polyprotein [Solanum melongena]
Length = 361
Score = 142 bits (358), Expect(2) = 3e-33
Identities = 67/120 (55%), Positives = 87/120 (72%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
PLA H +LS+ +S +T+EE E M+ V YA+ VGSLMY +VCTR DI VSVV+RYM P
Sbjct: 163 PLAPHLKLSSQLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDP 222
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +WQ VKWILRY+K T ++GL++++ VGY D DY GDLD+RRS T Y+FT+
Sbjct: 223 GKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGSCVVGYCDSDYAGDLDKRRSTTGYLFTL 282
Score = 25.0 bits (53), Expect(2) = 3e-33
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQD 382
DR L ++Q +Y++KVL FG+ D
Sbjct: 130 DRQRGKLCLTQKQYLKKVLQRFGIND 155
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 135 bits (341), Expect(2) = 6e-33
Identities = 64/117 (54%), Positives = 85/117 (72%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+A HF+LSA T+E+VE MS V Y+S VGSLMY +VC+RPD+ H +S+V+RYM P
Sbjct: 1079 PIAPHFKLSALQCANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNP 1138
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYV 14
GK +W+ V+WI RYL+GTA+ L + R T K +GYVD D+ DLD+RRSLT Y+
Sbjct: 1139 GKEHWKAVQWIFRYLRGTADACLKFGR---TDKGLIGYVDSDFAADLDKRRSLTEYM 1192
Score = 30.8 bits (68), Expect(2) = 6e-33
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
D+ L++SQ YI+KVL F M D+K
Sbjct: 1047 DKNSGLLFLSQQSYIKKVLQCFNMHDAK 1074
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 136 bits (342), Expect(2) = 8e-33
Identities = 66/120 (55%), Positives = 85/120 (70%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+A HF+LSA T+ E+E MS V Y+S VGSLMY +VC+RPD+ + +S+V+RYM P
Sbjct: 1092 PIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNP 1151
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ ++WI RYL+GT L + R T K +GYVD DY DLDRRRSLT YVFTI
Sbjct: 1152 GKEHWRALQWIFRYLRGTTYSCLKFGR---TDKGLIGYVDSDYAADLDRRRSLTGYVFTI 1208
Score = 30.0 bits (66), Expect(2) = 8e-33
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL F MQ++K
Sbjct: 1060 DRKSGLLFLSQHNYIKKVLQRFNMQNAK 1087
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 135 bits (339), Expect(2) = 2e-32
Identities = 66/120 (55%), Positives = 84/120 (70%)
Frame = -2
Query: 364 PLAAHFRLSA*MSLQTEEEVE*MSHVLYASVVGSLMYVIVCTRPDILHVVSVVNRYMDKP 185
P+A HF+LSA + E+E MS V Y+S VGSLMY +VC+RPD+ + +S+V+RYM P
Sbjct: 1090 PIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNP 1149
Query: 184 GKIYWQVVKWILRYLKGTAEVGLLYDRSSDTSKSFVGYVDFDYVGDLDRRRSLTSYVFTI 5
GK +W+ V+WI RYL+GT L + R T K +GYVD DY DLDRRRSLT YVFTI
Sbjct: 1150 GKEHWRAVQWIFRYLRGTTYSCLKFGR---TDKGLIGYVDSDYAADLDRRRSLTGYVFTI 1206
Score = 30.0 bits (66), Expect(2) = 2e-32
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 459 DRGVDTLYVSQMKYIEKVLDLFGMQDSK 376
DR L++SQ YI+KVL F MQ++K
Sbjct: 1058 DRKSGLLFLSQHNYIKKVLQRFNMQNAK 1085