BLASTX nr result

ID: Akebia25_contig00044134 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00044134
         (843 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT40500.1| Putative reverse transcriptase, identical [Solanu...    59   3e-06
ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596...    57   9e-06

>gb|AAT40500.1| Putative reverse transcriptase, identical [Solanum demissum]
          Length = 213

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
 Frame = -3

Query: 655 YLGLNIHRVRDFDANVAYKITIEWLKERCDSGVLCNMCIPIGSK-EIM*YGIKVAICY-A 482
           YLG  I    D D +V +++   W+K R  SGVLC+  IP+  K +     ++ A+ Y A
Sbjct: 39  YLGAVIQGSGDIDDDVTHRVGAAWMKWRLASGVLCDKKIPLKLKGKFYRVVVRPALLYGA 98

Query: 481 KCWAI-NKHMYIE*VWPRQACWGTCEKNVRLFFS**VNFN*KRATTAATEVKATYLGVAP 305
           +CW + N H++   V   +     C                 R+     EV    +GVA 
Sbjct: 99  ECWPVKNAHVHKMHVAEMRMLRWMCGHT--------------RSDKIRNEVIREKVGVAS 144

Query: 304 IGDKMKRS*LRWFHHVQRRT 245
           + DK++ + LRWF HV+RR+
Sbjct: 145 VVDKLREARLRWFGHVKRRS 164


>ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
          Length = 278

 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
 Frame = -3

Query: 655 YLGLNIHRVRDFDANVAYKITIEWLKERCDSGVLCNMCIPIGSK-EIM*YGIKVAICY-A 482
           YLG  I    D D +V ++I + W+K R  SGVLC+  IP   K +     ++ A+ Y A
Sbjct: 94  YLGSVIQGSGDIDDDVTHRIGVAWMKWRLASGVLCDKKIPPRLKGKFYRMVVRPALLYGA 153

Query: 481 KCWAI-NKHMYIE*VWPRQACWGTCEKNVRLFFS**VNFN*KRATTAATEVKATYLGVAP 305
           +CW + N H+    V   +     C                 R+     EV    +GVA 
Sbjct: 154 ECWPVKNSHVQKMHVAEMRMLRWMCGHT--------------RSDKIRNEVIREKVGVAS 199

Query: 304 IGDKMKRS*LRWFHHVQRR 248
           + DK++ + LRWF HV+RR
Sbjct: 200 VVDKLREARLRWFGHVRRR 218


Top