BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00044023
         (1174 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   435   e-119
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   431   e-118
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   429   e-117
emb|CBI21038.3| unnamed protein product [Vitis vinifera]              426   e-116
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   426   e-116
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   426   e-116
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   426   e-116
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   420   e-115
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     418   e-114
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     417   e-114
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    417   e-114
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    417   e-114
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   417   e-114
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   414   e-113
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   413   e-113
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   412   e-112
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops...   411   e-112
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   410   e-112
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha...   409   e-112
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...   408   e-111

>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  435 bits (1119), Expect = e-119
 Identities = 210/299 (70%), Positives = 242/299 (80%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK L R V+ +DII+FF K+MVNENLGTICNAHVVHAD SEYGALDE C+ LAELAATA
Sbjct: 895  EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATA 954

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK VTMP  LKPK+YPDFMGKE +QSYKSNKILG+LYR  KDA D D    SE+
Sbjct: 955  VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
               P DI YDTDLE+P S +FI DAWN KCSYDGQ+N LL QYKVN EEE+VTGHIWSMP
Sbjct: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KYNSRKQGELKE+LKH+Y AL KEF+ VFE +  D +LL+++EK+ L+E+KASAWYQ TY
Sbjct: 1075 KYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134

Query: 729  HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905
            HP WVKKSLDL+E D  R   +LSFAWI  +YL RIKIRCR   ++DT KP+N LA Y+
Sbjct: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYV 1193


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  431 bits (1109), Expect = e-118
 Identities = 206/305 (67%), Positives = 242/305 (79%), Gaps = 6/305 (1%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK+L R VN+QDIIDFF KNMVNENLG ICNAHVVHAD SEYGALDE C+KLAELAATA
Sbjct: 895  EAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATA 954

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDA------SDRDK 350
            VD+PKTGK VTMP  LKPK+YPDFMGKE++QSY SNKILG+LYR +KD        D D 
Sbjct: 955  VDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDA 1014

Query: 351  LSPSELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTG 530
             + SEL+    DIPYD DLE+ GSS++ILDAW+ KCSYDGQ+  LL QYKV  EEE+VTG
Sbjct: 1015 ATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTG 1074

Query: 531  HIWSMPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASA 710
            HIWSMPK NSRKQGELKE+LK +YH+L KEF+ VFE +  D + LT++EK+ LYEQKASA
Sbjct: 1075 HIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASA 1134

Query: 711  WYQATYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINN 890
            WYQ  YHP WV KS++L+EPD     ++LSFAWI  +YL RIKIRCR  + +DT KP+N+
Sbjct: 1135 WYQVAYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNS 1194

Query: 891  LASYL 905
            L  YL
Sbjct: 1195 LVKYL 1199


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  429 bits (1102), Expect = e-117
 Identities = 202/299 (67%), Positives = 243/299 (81%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK L R VN+QDII+FF KNMVN+NLG ICNAHVVHAD SEYGA D+ C+ LAELAATA
Sbjct: 898  EAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATA 957

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK V+MP  LKPKMYPDFMGKEE+QSYKS KILG+LYR IKDA D D  + SEL
Sbjct: 958  VDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSEL 1017

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
            +  P DIPYD+DLE+ G+S++I DAW+ KCSYDGQ+N LL QYKV  EEE+VTGHIWSMP
Sbjct: 1018 NLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMP 1077

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KY+SRKQGELK++LKH+Y++L KEF+ +FE +  + + L   EK+ LYEQKASAWYQ  Y
Sbjct: 1078 KYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVY 1137

Query: 729  HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905
            HP WVKKSL+L++PDG     +LSFAWI  +YL RIKIR R T ++D+ KP+N+LA YL
Sbjct: 1138 HPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYL 1196


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  426 bits (1095), Expect = e-116
 Identities = 207/302 (68%), Positives = 242/302 (80%), Gaps = 3/302 (0%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK L R V + DIIDFFTKNMVNENLG ICNAHVVHAD+SEYGALDE C+ LAE AATA
Sbjct: 732  EAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATA 791

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK VT+P  LKPKMYPDFMGKEEFQ+Y+SNKILGK+YR IKDA + D    SE 
Sbjct: 792  VDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQ 851

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
             F  + +P+D DL IPGS++FI DAW HKCSYDGQ+N LLGQYKV  EEE+VTGH+WSMP
Sbjct: 852  IFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMP 911

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KY SRKQGEL E+LKHAY +L KEF+ +FE +  D   LT +EK+ LYEQKASAWYQ TY
Sbjct: 912  KYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTY 971

Query: 729  HPLWVKKSLDLREPD---GDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899
            HP WVKKSL+L+ PD   G+RV  +LSFAWI  +YL RIKIR + T ++D+ KPIN+LA 
Sbjct: 972  HPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLAR 1029

Query: 900  YL 905
            +L
Sbjct: 1030 FL 1031


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  426 bits (1095), Expect = e-116
 Identities = 207/302 (68%), Positives = 242/302 (80%), Gaps = 3/302 (0%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK L R V + DIIDFFTKNMVNENLG ICNAHVVHAD+SEYGALDE C+ LAE AATA
Sbjct: 894  EAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATA 953

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK VT+P  LKPKMYPDFMGKEEFQ+Y+SNKILGK+YR IKDA + D    SE 
Sbjct: 954  VDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQ 1013

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
             F  + +P+D DL IPGS++FI DAW HKCSYDGQ+N LLGQYKV  EEE+VTGH+WSMP
Sbjct: 1014 IFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMP 1073

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KY SRKQGEL E+LKHAY +L KEF+ +FE +  D   LT +EK+ LYEQKASAWYQ TY
Sbjct: 1074 KYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTY 1133

Query: 729  HPLWVKKSLDLREPD---GDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899
            HP WVKKSL+L+ PD   G+RV  +LSFAWI  +YL RIKIR + T ++D+ KPIN+LA 
Sbjct: 1134 HPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLAR 1191

Query: 900  YL 905
            +L
Sbjct: 1192 FL 1193


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  426 bits (1094), Expect = e-116
 Identities = 201/303 (66%), Positives = 243/303 (80%), Gaps = 1/303 (0%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K L R +   DI++FF KNM+NE+LGTICNAHVVHAD+S++GALDE C++L+ELAA
Sbjct: 892  PAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAA 951

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
            TAVD+PKTGK VTMP  LKPK+YPDFMGKE  QSYKS KILGK+YR I+DA D D +  S
Sbjct: 952  TAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITS 1011

Query: 363  -ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIW 539
             EL+F P D+ YD DLE+ G+ +FI +AW+ KCSYDGQ++ LLGQYKVN EEEIVTGHIW
Sbjct: 1012 RELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIW 1071

Query: 540  SMPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQ 719
            SMPKY SRKQGELKEKLKH+Y  L K+F+ VFENLG + + LT +E++ LYE+KASAWYQ
Sbjct: 1072 SMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQ 1131

Query: 720  ATYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899
              YHP W+KKSL+LREPD      +LSF WI  +YL RIKI+CR T+S D  KPIN+LAS
Sbjct: 1132 VAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLAS 1191

Query: 900  YLT 908
            YL+
Sbjct: 1192 YLS 1194


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  426 bits (1094), Expect = e-116
 Identities = 201/303 (66%), Positives = 243/303 (80%), Gaps = 1/303 (0%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K L R +   DI++FF KNM+NE+LGTICNAHVVHAD+S++GALDE C++L+ELAA
Sbjct: 892  PAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAA 951

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
            TAVD+PKTGK VTMP  LKPK+YPDFMGKE  QSYKS KILGK+YR I+DA D D +  S
Sbjct: 952  TAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITS 1011

Query: 363  -ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIW 539
             EL+F P D+ YD DLE+ G+ +FI +AW+ KCSYDGQ++ LLGQYKVN EEEIVTGHIW
Sbjct: 1012 RELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIW 1071

Query: 540  SMPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQ 719
            SMPKY SRKQGELKEKLKH+Y  L K+F+ VFENLG + + LT +E++ LYE+KASAWYQ
Sbjct: 1072 SMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQ 1131

Query: 720  ATYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899
              YHP W+KKSL+LREPD      +LSF WI  +YL RIKI+CR T+S D  KPIN+LAS
Sbjct: 1132 VAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLAS 1191

Query: 900  YLT 908
            YL+
Sbjct: 1192 YLS 1194


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  420 bits (1080), Expect = e-115
 Identities = 204/301 (67%), Positives = 237/301 (78%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 893  PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD  D +    +
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L   P+DIPYDT LEI GS+ FI DAWN KCSYDGQ+N LLGQYKVN EEE+VTGHIWS
Sbjct: 1013 GLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KASAWYQ 
Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TYHP WV +SL+L+ PD      +LSFAWI  +YL RIKIR R     D+ KPIN+L  Y
Sbjct: 1133 TYHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  418 bits (1074), Expect = e-114
 Identities = 201/301 (66%), Positives = 238/301 (79%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K++ R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 893  PAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD  D +    +
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSA 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L   P DIPYD+ LEIPGS+ FI DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS
Sbjct: 1013 GLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KASAWYQ 
Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TY+P WV +SL+L+ PD      +LSFAWI  +YL RIKIR R  +  D+ KPIN+L  Y
Sbjct: 1133 TYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  417 bits (1073), Expect = e-114
 Identities = 203/301 (67%), Positives = 237/301 (78%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 893  PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD  D +    +
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L   P+DIPYDT LEI GS+ FI DAWN KCSYDGQ+N LLGQYKVN EEE+VTG+IWS
Sbjct: 1013 GLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKYN++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KASAWYQ 
Sbjct: 1073 MPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TYHP WV +SL+L+  D      +LSFAWI  +YL RIKIR R  +  D+ KPIN+L  Y
Sbjct: 1133 TYHPHWVARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  417 bits (1072), Expect = e-114
 Identities = 202/301 (67%), Positives = 238/301 (79%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 893  PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD  D +    +
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L   P+DIPYDT L IPGS+ FI DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS
Sbjct: 1013 GLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KASAWYQ 
Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TY+P WV +SL+L+ PD      +LSFAWI  +YL RIKIR R  +  D+ KPIN+L  Y
Sbjct: 1133 TYNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  417 bits (1072), Expect = e-114
 Identities = 202/301 (67%), Positives = 238/301 (79%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 893  PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD  D +    +
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L   P+DIPYD+ LEI GS+ FI DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS
Sbjct: 1013 GLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KASAWYQ 
Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TYHP WV +SL+L+ PD      +LSFAWI  +YL RIKIR R  +  D+ KPIN+L  Y
Sbjct: 1133 TYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  417 bits (1071), Expect = e-114
 Identities = 196/302 (64%), Positives = 239/302 (79%), Gaps = 1/302 (0%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P EAK   R V  QDIIDFF KNM NENLG ICNAHVVHAD+S+YGALD  C+KLAELAA
Sbjct: 891  PAEAKLQGRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAA 950

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK V++PQ LKP++YPDF+GKE+ QSYKS KILG+LYR ++DA D D  + S
Sbjct: 951  LAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSS 1010

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
            EL + P DIPYD DLE+PG+++F+ DAW  KCSYDGQ+  L+GQYKV  EEEIVTGH+WS
Sbjct: 1011 ELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWS 1070

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            +PK NS+KQGELKE+L H+Y+AL KEF+ +FENL  +L+ LT +EK+ L E+KASAWYQ 
Sbjct: 1071 IPKSNSKKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQV 1130

Query: 723  TYHPLWVKKSLDLREPDG-DRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899
            TYHP WVK+S  L+EPDG   V  +LSFAWI  +YL RIKI+C   E +D+ KPIN+L  
Sbjct: 1131 TYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKR 1190

Query: 900  YL 905
            YL
Sbjct: 1191 YL 1192


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  414 bits (1065), Expect = e-113
 Identities = 200/301 (66%), Positives = 237/301 (78%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 893  PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD  D +    +
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSA 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L   P DIPYD+ LEIPGS+ F+ DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS
Sbjct: 1013 GLELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KASAWYQ 
Sbjct: 1073 MPKYSAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TY+P WV +SL+L+ PD      +LSFAWI  +YL RI IR R  +  D+ KPIN+L  Y
Sbjct: 1133 TYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  413 bits (1062), Expect = e-113
 Identities = 198/301 (65%), Positives = 238/301 (79%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P EAK+L R V + DIIDFF KNMV E+LG ICNAHVVHAD SE+GA+DEKC+KLAELAA
Sbjct: 893  PAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAA 952

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKE FQSY+S KILGKLYR + D  D +    S
Sbjct: 953  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESS 1012

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L + P+DIPYDT+LEIPG  +FI DAWNHKCSYDGQ+N LLGQYKVN EEE+VTGHIWS
Sbjct: 1013 GLEYVPKDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWS 1072

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  LL  +EK+ +YE+KA AWY+ 
Sbjct: 1073 MPKYSAKKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRV 1132

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TYHP WV +SL+L+ PD      +LSFAWI  +Y+ RIKIR R  ++ D+ KPI++L  Y
Sbjct: 1133 TYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRY 1192

Query: 903  L 905
            L
Sbjct: 1193 L 1193


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  412 bits (1059), Expect = e-112
 Identities = 198/301 (65%), Positives = 238/301 (79%)
 Frame = +3

Query: 3    PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182
            P EAK+L R V + DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA
Sbjct: 894  PAEAKQLGRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 953

Query: 183  TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362
             AVD+PKTGK VTMP  LKPKMYPDFMGKE FQ+Y+S KILGKLYR + D  D +    S
Sbjct: 954  LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESS 1013

Query: 363  ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542
             L F P+DIPYDT++EI G  +FI DAWNHKCSYDGQ+N LLGQYKVN EEE+VTGHIWS
Sbjct: 1014 GLEFVPKDIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWS 1073

Query: 543  MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722
            MPKY+++KQGELKE+LKHAY+ L KEF++VFE +  D  +L  +EK+ +YE+KASAWY+ 
Sbjct: 1074 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRV 1133

Query: 723  TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902
            TYHP WV +SL+L+ PD      +LSFAWI  +Y+ RIKIR R  ++ D+ KPIN L  Y
Sbjct: 1134 TYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRY 1193

Query: 903  L 905
            L
Sbjct: 1194 L 1194


>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
          Length = 1196

 Score =  411 bits (1056), Expect = e-112
 Identities = 197/299 (65%), Positives = 239/299 (79%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            E K L RAVN+QDIIDFF +N+ NE LGTICNAHVVHAD+SEYGA+DE+C+ LAELAATA
Sbjct: 894  EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 953

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK V+MP  LKPK+YPDFMGKE++Q+YKSNKILG+LYR +K+  D D  + SE 
Sbjct: 954  VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEVYDEDAEASSEE 1013

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
            S  P  IPYD  LEIPG  + I +AW HKCSYDGQ+  LLGQYKV  EEEIVTGHIWSMP
Sbjct: 1014 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1073

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KY S+KQGELKE+LKH+Y++L KEF+ VFE    D + L++EEK+ LYE+KASAWY  TY
Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTY 1133

Query: 729  HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905
            HP WVKKSL+L++PD     A+LSFAWI  +YL RIKIR R   S+D+ KP+++LA +L
Sbjct: 1134 HPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFL 1192


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  410 bits (1054), Expect = e-112
 Identities = 196/300 (65%), Positives = 240/300 (80%), Gaps = 1/300 (0%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK+L R VN+QDI++FF KNM NENLG ICNAHVV AD SEYGALDEKC+ LAELAATA
Sbjct: 895  EAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATA 954

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS-E 365
            VD+PKTGK V+MP  LKPK+YPDFMGKEE QSYKS KILG+LYR IKDA D D ++ S E
Sbjct: 955  VDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSE 1014

Query: 366  LSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSM 545
            L+F   DIPYD DLE+ G+++FI DAW+ KCSYDGQ+N LL QYKV  EEE+VTGH+WSM
Sbjct: 1015 LNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSM 1074

Query: 546  PKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQAT 725
            PK +SRKQG+LKE+LKH+Y+ L +EF+ VFE +  D   L  +EK+ LYE+KASAWYQ T
Sbjct: 1075 PKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVT 1134

Query: 726  YHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905
            YHP W++KSL+L++ DG  +  +LSFAWI  +YL RIKIR     ++D+ KP+N+LA YL
Sbjct: 1135 YHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYL 1194


>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
            gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
            Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
            AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
            Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
            Full=RNA-directed RNA polymerase 6
            gi|12324444|gb|AAG52184.1|AC012329_11 putative
            RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
            thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
            polymerase-like protein [Arabidopsis thaliana]
            gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
            gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
            6 [Arabidopsis thaliana]
          Length = 1196

 Score =  409 bits (1052), Expect = e-112
 Identities = 196/299 (65%), Positives = 238/299 (79%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            E K L RAVN+QDIIDFF +N+ NE LGTICNAHVVHAD+SEYGA+DE+C+ LAELAATA
Sbjct: 894  EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 953

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK V+MP  LKPK+YPDFMGKE++Q+YKSNKILG+LYR +K+  D D  + SE 
Sbjct: 954  VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1013

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
            S  P  IPYD  LEIPG  + I +AW HKC YDGQ+  LLGQYKV  EEEIVTGHIWSMP
Sbjct: 1014 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1073

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KY S+KQGELKE+LKH+Y++L KEF+ VFE    D + L++EEK+ LYE+KASAWY  TY
Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTY 1133

Query: 729  HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905
            HP WVKKSL+L++PD     A+LSFAWI  +YL RIKIR R   S+D+ KP+++LA +L
Sbjct: 1134 HPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFL 1192


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
            gi|482559225|gb|EOA23416.1| hypothetical protein
            CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score =  408 bits (1049), Expect = e-111
 Identities = 197/300 (65%), Positives = 241/300 (80%), Gaps = 1/300 (0%)
 Frame = +3

Query: 9    EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188
            EAK L RAVN+QDIIDFF +NM NE+LGTICNAHVVHAD+SEYGA+DE C+ LAELAATA
Sbjct: 894  EAKSLGRAVNHQDIIDFFARNMANESLGTICNAHVVHADRSEYGAMDEDCLLLAELAATA 953

Query: 189  VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368
            VD+PKTGK V++P  LKPK+YPDFMGKE++Q+YKSNKILG+LYR +K+  D D  + SE 
Sbjct: 954  VDFPKTGKIVSIPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1013

Query: 369  SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548
            +    DIPYDTDLEIPG ++ I +AW HKCSYDGQ+  LLGQYKV  EEEIVTGHIWSMP
Sbjct: 1014 NPDLSDIPYDTDLEIPGFADLIPEAWRHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1073

Query: 549  KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728
            KY S+KQG+LKE+LKH+Y++L KEF+ VFE    D + L+ EEK+ LYE+KASAWY  TY
Sbjct: 1074 KYTSKKQGDLKERLKHSYNSLKKEFRKVFEETIPDHENLSDEEKNILYEKKASAWYHVTY 1133

Query: 729  HPLWVKKSLDLREPDGDRVPAV-LSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905
            HP WV KSL+L++PD     AV LSFAWI  +YL RIKIR R   ++D+ KP+++LA +L
Sbjct: 1134 HPKWVTKSLELQDPDESSTHAVMLSFAWIAADYLARIKIRSREIGNMDSAKPVDSLAKFL 1193