BLASTX nr result
ID: Akebia25_contig00044023
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia25_contig00044023 (1174 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 435 e-119 ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 431 e-118 ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 429 e-117 emb|CBI21038.3| unnamed protein product [Vitis vinifera] 426 e-116 ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 426 e-116 ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 426 e-116 ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 426 e-116 gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 420 e-115 gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 418 e-114 gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 417 e-114 emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 417 e-114 dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 417 e-114 ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun... 417 e-114 gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 414 e-113 ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 413 e-113 ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 412 e-112 gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops... 411 e-112 ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 410 e-112 ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha... 409 e-112 ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps... 408 e-111 >ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Citrus sinensis] Length = 1197 Score = 435 bits (1119), Expect = e-119 Identities = 210/299 (70%), Positives = 242/299 (80%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK L R V+ +DII+FF K+MVNENLGTICNAHVVHAD SEYGALDE C+ LAELAATA Sbjct: 895 EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATA 954 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK VTMP LKPK+YPDFMGKE +QSYKSNKILG+LYR KDA D D SE+ Sbjct: 955 VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 P DI YDTDLE+P S +FI DAWN KCSYDGQ+N LL QYKVN EEE+VTGHIWSMP Sbjct: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KYNSRKQGELKE+LKH+Y AL KEF+ VFE + D +LL+++EK+ L+E+KASAWYQ TY Sbjct: 1075 KYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134 Query: 729 HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905 HP WVKKSLDL+E D R +LSFAWI +YL RIKIRCR ++DT KP+N LA Y+ Sbjct: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYV 1193 >ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis] gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis] Length = 1203 Score = 431 bits (1109), Expect = e-118 Identities = 206/305 (67%), Positives = 242/305 (79%), Gaps = 6/305 (1%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK+L R VN+QDIIDFF KNMVNENLG ICNAHVVHAD SEYGALDE C+KLAELAATA Sbjct: 895 EAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATA 954 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDA------SDRDK 350 VD+PKTGK VTMP LKPK+YPDFMGKE++QSY SNKILG+LYR +KD D D Sbjct: 955 VDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDA 1014 Query: 351 LSPSELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTG 530 + SEL+ DIPYD DLE+ GSS++ILDAW+ KCSYDGQ+ LL QYKV EEE+VTG Sbjct: 1015 ATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTG 1074 Query: 531 HIWSMPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASA 710 HIWSMPK NSRKQGELKE+LK +YH+L KEF+ VFE + D + LT++EK+ LYEQKASA Sbjct: 1075 HIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASA 1134 Query: 711 WYQATYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINN 890 WYQ YHP WV KS++L+EPD ++LSFAWI +YL RIKIRCR + +DT KP+N+ Sbjct: 1135 WYQVAYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNS 1194 Query: 891 LASYL 905 L YL Sbjct: 1195 LVKYL 1199 >ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1200 Score = 429 bits (1102), Expect = e-117 Identities = 202/299 (67%), Positives = 243/299 (81%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK L R VN+QDII+FF KNMVN+NLG ICNAHVVHAD SEYGA D+ C+ LAELAATA Sbjct: 898 EAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATA 957 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK V+MP LKPKMYPDFMGKEE+QSYKS KILG+LYR IKDA D D + SEL Sbjct: 958 VDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSEL 1017 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 + P DIPYD+DLE+ G+S++I DAW+ KCSYDGQ+N LL QYKV EEE+VTGHIWSMP Sbjct: 1018 NLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMP 1077 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KY+SRKQGELK++LKH+Y++L KEF+ +FE + + + L EK+ LYEQKASAWYQ Y Sbjct: 1078 KYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVY 1137 Query: 729 HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905 HP WVKKSL+L++PDG +LSFAWI +YL RIKIR R T ++D+ KP+N+LA YL Sbjct: 1138 HPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYL 1196 >emb|CBI21038.3| unnamed protein product [Vitis vinifera] Length = 1035 Score = 426 bits (1095), Expect = e-116 Identities = 207/302 (68%), Positives = 242/302 (80%), Gaps = 3/302 (0%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK L R V + DIIDFFTKNMVNENLG ICNAHVVHAD+SEYGALDE C+ LAE AATA Sbjct: 732 EAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATA 791 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK VT+P LKPKMYPDFMGKEEFQ+Y+SNKILGK+YR IKDA + D SE Sbjct: 792 VDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQ 851 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 F + +P+D DL IPGS++FI DAW HKCSYDGQ+N LLGQYKV EEE+VTGH+WSMP Sbjct: 852 IFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMP 911 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KY SRKQGEL E+LKHAY +L KEF+ +FE + D LT +EK+ LYEQKASAWYQ TY Sbjct: 912 KYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTY 971 Query: 729 HPLWVKKSLDLREPD---GDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899 HP WVKKSL+L+ PD G+RV +LSFAWI +YL RIKIR + T ++D+ KPIN+LA Sbjct: 972 HPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLAR 1029 Query: 900 YL 905 +L Sbjct: 1030 FL 1031 >ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera] Length = 1197 Score = 426 bits (1095), Expect = e-116 Identities = 207/302 (68%), Positives = 242/302 (80%), Gaps = 3/302 (0%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK L R V + DIIDFFTKNMVNENLG ICNAHVVHAD+SEYGALDE C+ LAE AATA Sbjct: 894 EAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATA 953 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK VT+P LKPKMYPDFMGKEEFQ+Y+SNKILGK+YR IKDA + D SE Sbjct: 954 VDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQ 1013 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 F + +P+D DL IPGS++FI DAW HKCSYDGQ+N LLGQYKV EEE+VTGH+WSMP Sbjct: 1014 IFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMP 1073 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KY SRKQGEL E+LKHAY +L KEF+ +FE + D LT +EK+ LYEQKASAWYQ TY Sbjct: 1074 KYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTY 1133 Query: 729 HPLWVKKSLDLREPD---GDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899 HP WVKKSL+L+ PD G+RV +LSFAWI +YL RIKIR + T ++D+ KPIN+LA Sbjct: 1134 HPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLAR 1191 Query: 900 YL 905 +L Sbjct: 1192 FL 1193 >ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus] Length = 1197 Score = 426 bits (1094), Expect = e-116 Identities = 201/303 (66%), Positives = 243/303 (80%), Gaps = 1/303 (0%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K L R + DI++FF KNM+NE+LGTICNAHVVHAD+S++GALDE C++L+ELAA Sbjct: 892 PAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAA 951 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 TAVD+PKTGK VTMP LKPK+YPDFMGKE QSYKS KILGK+YR I+DA D D + S Sbjct: 952 TAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITS 1011 Query: 363 -ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIW 539 EL+F P D+ YD DLE+ G+ +FI +AW+ KCSYDGQ++ LLGQYKVN EEEIVTGHIW Sbjct: 1012 RELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIW 1071 Query: 540 SMPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQ 719 SMPKY SRKQGELKEKLKH+Y L K+F+ VFENLG + + LT +E++ LYE+KASAWYQ Sbjct: 1072 SMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQ 1131 Query: 720 ATYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899 YHP W+KKSL+LREPD +LSF WI +YL RIKI+CR T+S D KPIN+LAS Sbjct: 1132 VAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLAS 1191 Query: 900 YLT 908 YL+ Sbjct: 1192 YLS 1194 >ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus] gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus] Length = 1197 Score = 426 bits (1094), Expect = e-116 Identities = 201/303 (66%), Positives = 243/303 (80%), Gaps = 1/303 (0%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K L R + DI++FF KNM+NE+LGTICNAHVVHAD+S++GALDE C++L+ELAA Sbjct: 892 PAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAA 951 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 TAVD+PKTGK VTMP LKPK+YPDFMGKE QSYKS KILGK+YR I+DA D D + S Sbjct: 952 TAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITS 1011 Query: 363 -ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIW 539 EL+F P D+ YD DLE+ G+ +FI +AW+ KCSYDGQ++ LLGQYKVN EEEIVTGHIW Sbjct: 1012 RELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIW 1071 Query: 540 SMPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQ 719 SMPKY SRKQGELKEKLKH+Y L K+F+ VFENLG + + LT +E++ LYE+KASAWYQ Sbjct: 1072 SMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQ 1131 Query: 720 ATYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899 YHP W+KKSL+LREPD +LSF WI +YL RIKI+CR T+S D KPIN+LAS Sbjct: 1132 VAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLAS 1191 Query: 900 YLT 908 YL+ Sbjct: 1192 YLS 1194 >gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] Length = 1197 Score = 420 bits (1080), Expect = e-115 Identities = 204/301 (67%), Positives = 237/301 (78%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 893 PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD D + + Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L P+DIPYDT LEI GS+ FI DAWN KCSYDGQ+N LLGQYKVN EEE+VTGHIWS Sbjct: 1013 GLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KASAWYQ Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TYHP WV +SL+L+ PD +LSFAWI +YL RIKIR R D+ KPIN+L Y Sbjct: 1133 TYHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] Length = 1197 Score = 418 bits (1074), Expect = e-114 Identities = 201/301 (66%), Positives = 238/301 (79%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K++ R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 893 PAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD D + + Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSA 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L P DIPYD+ LEIPGS+ FI DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS Sbjct: 1013 GLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KASAWYQ Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TY+P WV +SL+L+ PD +LSFAWI +YL RIKIR R + D+ KPIN+L Y Sbjct: 1133 TYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 417 bits (1073), Expect = e-114 Identities = 203/301 (67%), Positives = 237/301 (78%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 893 PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD D + + Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L P+DIPYDT LEI GS+ FI DAWN KCSYDGQ+N LLGQYKVN EEE+VTG+IWS Sbjct: 1013 GLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKYN++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KASAWYQ Sbjct: 1073 MPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TYHP WV +SL+L+ D +LSFAWI +YL RIKIR R + D+ KPIN+L Y Sbjct: 1133 TYHPHWVARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 417 bits (1072), Expect = e-114 Identities = 202/301 (67%), Positives = 238/301 (79%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 893 PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD D + + Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L P+DIPYDT L IPGS+ FI DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS Sbjct: 1013 GLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KASAWYQ Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TY+P WV +SL+L+ PD +LSFAWI +YL RIKIR R + D+ KPIN+L Y Sbjct: 1133 TYNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 417 bits (1072), Expect = e-114 Identities = 202/301 (67%), Positives = 238/301 (79%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 893 PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD D + + Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSA 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L P+DIPYD+ LEI GS+ FI DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS Sbjct: 1013 GLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KASAWYQ Sbjct: 1073 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TYHP WV +SL+L+ PD +LSFAWI +YL RIKIR R + D+ KPIN+L Y Sbjct: 1133 TYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica] gi|462422376|gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica] Length = 1196 Score = 417 bits (1071), Expect = e-114 Identities = 196/302 (64%), Positives = 239/302 (79%), Gaps = 1/302 (0%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P EAK R V QDIIDFF KNM NENLG ICNAHVVHAD+S+YGALD C+KLAELAA Sbjct: 891 PAEAKLQGRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAA 950 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK V++PQ LKP++YPDF+GKE+ QSYKS KILG+LYR ++DA D D + S Sbjct: 951 LAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSS 1010 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 EL + P DIPYD DLE+PG+++F+ DAW KCSYDGQ+ L+GQYKV EEEIVTGH+WS Sbjct: 1011 ELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWS 1070 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 +PK NS+KQGELKE+L H+Y+AL KEF+ +FENL +L+ LT +EK+ L E+KASAWYQ Sbjct: 1071 IPKSNSKKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQV 1130 Query: 723 TYHPLWVKKSLDLREPDG-DRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLAS 899 TYHP WVK+S L+EPDG V +LSFAWI +YL RIKI+C E +D+ KPIN+L Sbjct: 1131 TYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKR 1190 Query: 900 YL 905 YL Sbjct: 1191 YL 1192 >gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] Length = 1197 Score = 414 bits (1065), Expect = e-113 Identities = 200/301 (66%), Positives = 237/301 (78%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P E K+L R VN+ DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 893 PAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKEEFQSYKS KILGKLYR +KD D + + Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSA 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L P DIPYD+ LEIPGS+ F+ DAWN KCSYDGQ++ LLGQYKVN EEE+VTGHIWS Sbjct: 1013 GLELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KASAWYQ Sbjct: 1073 MPKYSAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TY+P WV +SL+L+ PD +LSFAWI +YL RI IR R + D+ KPIN+L Y Sbjct: 1133 TYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum] gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum] Length = 1197 Score = 413 bits (1062), Expect = e-113 Identities = 198/301 (65%), Positives = 238/301 (79%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P EAK+L R V + DIIDFF KNMV E+LG ICNAHVVHAD SE+GA+DEKC+KLAELAA Sbjct: 893 PAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAA 952 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKE FQSY+S KILGKLYR + D D + S Sbjct: 953 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESS 1012 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L + P+DIPYDT+LEIPG +FI DAWNHKCSYDGQ+N LLGQYKVN EEE+VTGHIWS Sbjct: 1013 GLEYVPKDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWS 1072 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D LL +EK+ +YE+KA AWY+ Sbjct: 1073 MPKYSAKKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRV 1132 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TYHP WV +SL+L+ PD +LSFAWI +Y+ RIKIR R ++ D+ KPI++L Y Sbjct: 1133 TYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRY 1192 Query: 903 L 905 L Sbjct: 1193 L 1193 >ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Solanum tuberosum] Length = 1198 Score = 412 bits (1059), Expect = e-112 Identities = 198/301 (65%), Positives = 238/301 (79%) Frame = +3 Query: 3 PVEAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAA 182 P EAK+L R V + DIIDFF+KNMV E+LG ICNAHVVHAD SE+GALDEKC+KLAELAA Sbjct: 894 PAEAKQLGRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAA 953 Query: 183 TAVDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS 362 AVD+PKTGK VTMP LKPKMYPDFMGKE FQ+Y+S KILGKLYR + D D + S Sbjct: 954 LAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESS 1013 Query: 363 ELSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWS 542 L F P+DIPYDT++EI G +FI DAWNHKCSYDGQ+N LLGQYKVN EEE+VTGHIWS Sbjct: 1014 GLEFVPKDIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWS 1073 Query: 543 MPKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQA 722 MPKY+++KQGELKE+LKHAY+ L KEF++VFE + D +L +EK+ +YE+KASAWY+ Sbjct: 1074 MPKYSAKKQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRV 1133 Query: 723 TYHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASY 902 TYHP WV +SL+L+ PD +LSFAWI +Y+ RIKIR R ++ D+ KPIN L Y Sbjct: 1134 TYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRY 1193 Query: 903 L 905 L Sbjct: 1194 L 1194 >gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana] Length = 1196 Score = 411 bits (1056), Expect = e-112 Identities = 197/299 (65%), Positives = 239/299 (79%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 E K L RAVN+QDIIDFF +N+ NE LGTICNAHVVHAD+SEYGA+DE+C+ LAELAATA Sbjct: 894 EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 953 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK V+MP LKPK+YPDFMGKE++Q+YKSNKILG+LYR +K+ D D + SE Sbjct: 954 VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEVYDEDAEASSEE 1013 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 S P IPYD LEIPG + I +AW HKCSYDGQ+ LLGQYKV EEEIVTGHIWSMP Sbjct: 1014 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1073 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KY S+KQGELKE+LKH+Y++L KEF+ VFE D + L++EEK+ LYE+KASAWY TY Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTY 1133 Query: 729 HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905 HP WVKKSL+L++PD A+LSFAWI +YL RIKIR R S+D+ KP+++LA +L Sbjct: 1134 HPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFL 1192 >ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1198 Score = 410 bits (1054), Expect = e-112 Identities = 196/300 (65%), Positives = 240/300 (80%), Gaps = 1/300 (0%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK+L R VN+QDI++FF KNM NENLG ICNAHVV AD SEYGALDEKC+ LAELAATA Sbjct: 895 EAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATA 954 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPS-E 365 VD+PKTGK V+MP LKPK+YPDFMGKEE QSYKS KILG+LYR IKDA D D ++ S E Sbjct: 955 VDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSE 1014 Query: 366 LSFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSM 545 L+F DIPYD DLE+ G+++FI DAW+ KCSYDGQ+N LL QYKV EEE+VTGH+WSM Sbjct: 1015 LNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSM 1074 Query: 546 PKYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQAT 725 PK +SRKQG+LKE+LKH+Y+ L +EF+ VFE + D L +EK+ LYE+KASAWYQ T Sbjct: 1075 PKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVT 1134 Query: 726 YHPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905 YHP W++KSL+L++ DG + +LSFAWI +YL RIKIR ++D+ KP+N+LA YL Sbjct: 1135 YHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYL 1194 >ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana] gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName: Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName: Full=RNA-directed RNA polymerase 6 gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana] gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana] gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana] Length = 1196 Score = 409 bits (1052), Expect = e-112 Identities = 196/299 (65%), Positives = 238/299 (79%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 E K L RAVN+QDIIDFF +N+ NE LGTICNAHVVHAD+SEYGA+DE+C+ LAELAATA Sbjct: 894 EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 953 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK V+MP LKPK+YPDFMGKE++Q+YKSNKILG+LYR +K+ D D + SE Sbjct: 954 VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1013 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 S P IPYD LEIPG + I +AW HKC YDGQ+ LLGQYKV EEEIVTGHIWSMP Sbjct: 1014 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1073 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KY S+KQGELKE+LKH+Y++L KEF+ VFE D + L++EEK+ LYE+KASAWY TY Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTY 1133 Query: 729 HPLWVKKSLDLREPDGDRVPAVLSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905 HP WVKKSL+L++PD A+LSFAWI +YL RIKIR R S+D+ KP+++LA +L Sbjct: 1134 HPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFL 1192 >ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella] gi|482559225|gb|EOA23416.1| hypothetical protein CARUB_v10016597mg [Capsella rubella] Length = 1197 Score = 408 bits (1049), Expect = e-111 Identities = 197/300 (65%), Positives = 241/300 (80%), Gaps = 1/300 (0%) Frame = +3 Query: 9 EAKKLPRAVNNQDIIDFFTKNMVNENLGTICNAHVVHADQSEYGALDEKCMKLAELAATA 188 EAK L RAVN+QDIIDFF +NM NE+LGTICNAHVVHAD+SEYGA+DE C+ LAELAATA Sbjct: 894 EAKSLGRAVNHQDIIDFFARNMANESLGTICNAHVVHADRSEYGAMDEDCLLLAELAATA 953 Query: 189 VDYPKTGKPVTMPQSLKPKMYPDFMGKEEFQSYKSNKILGKLYRNIKDASDRDKLSPSEL 368 VD+PKTGK V++P LKPK+YPDFMGKE++Q+YKSNKILG+LYR +K+ D D + SE Sbjct: 954 VDFPKTGKIVSIPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1013 Query: 369 SFAPEDIPYDTDLEIPGSSNFILDAWNHKCSYDGQINALLGQYKVNTEEEIVTGHIWSMP 548 + DIPYDTDLEIPG ++ I +AW HKCSYDGQ+ LLGQYKV EEEIVTGHIWSMP Sbjct: 1014 NPDLSDIPYDTDLEIPGFADLIPEAWRHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1073 Query: 549 KYNSRKQGELKEKLKHAYHALSKEFKHVFENLGQDLQLLTKEEKSTLYEQKASAWYQATY 728 KY S+KQG+LKE+LKH+Y++L KEF+ VFE D + L+ EEK+ LYE+KASAWY TY Sbjct: 1074 KYTSKKQGDLKERLKHSYNSLKKEFRKVFEETIPDHENLSDEEKNILYEKKASAWYHVTY 1133 Query: 729 HPLWVKKSLDLREPDGDRVPAV-LSFAWIPVEYLVRIKIRCRVTESLDTRKPINNLASYL 905 HP WV KSL+L++PD AV LSFAWI +YL RIKIR R ++D+ KP+++LA +L Sbjct: 1134 HPKWVTKSLELQDPDESSTHAVMLSFAWIAADYLARIKIRSREIGNMDSAKPVDSLAKFL 1193