BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00042658
         (1130 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containi...   220   1e-54
ref|XP_006853118.1| hypothetical protein AMTR_s00038p00140720 [A...   213   2e-52
gb|EXB57399.1| hypothetical protein L484_016452 [Morus notabilis]     207   9e-51
emb|CBI21003.3| unnamed protein product [Vitis vinifera]              205   3e-50
ref|XP_006853110.1| hypothetical protein AMTR_s00038p00132760 [A...   195   3e-47
ref|XP_007206864.1| hypothetical protein PRUPE_ppa1027201mg, par...   188   4e-45
ref|XP_002309609.2| pentatricopeptide repeat-containing family p...   187   5e-45
ref|XP_002515553.1| pentatricopeptide repeat-containing protein,...   185   3e-44
ref|XP_004514126.1| PREDICTED: pentatricopeptide repeat-containi...   184   6e-44
ref|XP_007013815.1| Pentatricopeptide repeat superfamily protein...   183   1e-43
gb|EYU21955.1| hypothetical protein MIMGU_mgv1a001349mg [Mimulus...   179   1e-42
ref|XP_006450492.1| hypothetical protein CICLE_v10010816mg [Citr...   176   1e-41
ref|XP_007136983.1| hypothetical protein PHAVU_009G090400g [Phas...   172   3e-40
ref|XP_003607325.1| Pentatricopeptide repeat-containing protein ...   167   8e-39
ref|XP_004245400.1| PREDICTED: pentatricopeptide repeat-containi...   147   6e-33
ref|XP_006364273.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-31
ref|XP_004301621.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-31
ref|NP_181456.1| pentatricopeptide repeat protein LOJ [Arabidops...   139   2e-30
ref|XP_002879788.1| pentatricopeptide repeat-containing protein ...   138   4e-30
ref|XP_006293664.1| hypothetical protein CARUB_v10022620mg [Caps...   127   7e-27

>ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
            mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  220 bits (560), Expect = 1e-54
 Identities = 138/320 (43%), Positives = 188/320 (58%), Gaps = 5/320 (1%)
 Frame = +3

Query: 186  MRIYVASSSHSPWLLRSYRKSFCSASTLNSQDPVLKEKPISESGISETSDSKTGFFDKPI 365
            MR  ++ S+ SP L   +    C  S   S  P + E  I E     TS+S T F + P 
Sbjct: 1    MRSAISLSTFSPILRWPFTNPKCVCSV--SIPPAISEPEILEKS---TSESLTHFPEDPN 55

Query: 366  SETTFPVKPSSKIAFLEEPNLEIGVSDKPTSEGARNAF--TQFQQEISSQDTNTVLNQDL 539
             +  FP K S + +F        G S  P    +++    +Q  QE       T L+Q+ 
Sbjct: 56   PKANFPEKISPESSFP-------GNSSSPYPRYSQDTVPTSQIHQE------TTPLSQNH 102

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWD-ARKLLNQCL 716
            VI+ LL + +DP   L+YFK AE QRGF+RGVDA C+ LHIL+ S      ARKLLN+ +
Sbjct: 103  VIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYV 162

Query: 717  SGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIV 890
            SGDS P   + VD L   +KR    L+  +F+Y+LN+Y+RA RIE+A +CF+ MI  D++
Sbjct: 163  SGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVI 222

Query: 891  PGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKY 1070
            P + Y NILL ALVR NMIG+ RDLY  M+ RG+  D FT+ +M+ ACLKEG+ EEAE+Y
Sbjct: 223  PWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEY 282

Query: 1071 FREMKTRGFEFDPVTYNTVI 1130
            FRE K RG + D   Y+ +I
Sbjct: 283  FRETKERGVKLDAGAYSIII 302



 Score = 68.6 bits (166), Expect = 5e-09
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
 Frame = +3

Query: 633  VDALCITLHILVNSRNVWDARK----LLNQCLSGDSSPCATILVDRLTETSKRCGLNPLL 800
            +D  C  L  +VN   V +       +L  C  G+    +++  D L    K    N + 
Sbjct: 485  MDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKP---NVVT 541

Query: 801  FSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGML 980
            +S +++   + G  E A + FD+M+  +I P     N ++N L +   + +ARD  K  L
Sbjct: 542  YSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFL 601

Query: 981  ERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            E G    C T + ++   +KEG  + A   +REM   G   + VTY ++I
Sbjct: 602  EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLI 651


>ref|XP_006853118.1| hypothetical protein AMTR_s00038p00140720 [Amborella trichopoda]
            gi|548856757|gb|ERN14585.1| hypothetical protein
            AMTR_s00038p00140720 [Amborella trichopoda]
          Length = 855

 Score =  213 bits (541), Expect = 2e-52
 Identities = 111/254 (43%), Positives = 158/254 (62%), Gaps = 6/254 (2%)
 Frame = +3

Query: 387  KPSSKIAFLEEPNLEIGVSDKPTSEGARNAF------TQFQQEISSQDTNTVLNQDLVIE 548
            +P     +L +P      S  PTS+  R         +Q  ++IS   +NTVL Q+ V+E
Sbjct: 35   QPQISNGYLSQP-CRCTQSPLPTSQFDREILLSLSNTSQIDRQISLSHSNTVLTQEHVVE 93

Query: 549  FLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWDARKLLNQCLSGDS 728
             LL+NQ D    L+YF+WAE+QRGF+RG++ LC+ LHIL  ++++  AR L+   LS +S
Sbjct: 94   VLLSNQTDSKAALRYFRWAERQRGFIRGLEPLCVVLHILARNKDLPAARNLIKHSLSANS 153

Query: 729  SPCATILVDRLTETSKRCGLNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYR 908
            S  A+  +DRL ETS+RC  +P +F  VLN Y R G + ++ E + R++   + P +   
Sbjct: 154  SIGASAFIDRLLETSERCNSHPRVFDLVLNGYTRYGSVTESLETYHRLVSNGVFPSVGCI 213

Query: 909  NILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKT 1088
            N+LLN LVR N I +A DLY+ M+ERGV  DC TLD M+HAC K GK EEAE  F+EM+ 
Sbjct: 214  NLLLNKLVRLNFIDEAWDLYREMVERGVDLDCQTLDAMVHACSKGGKLEEAEGLFQEMRI 273

Query: 1089 RGFEFDPVTYNTVI 1130
            RG + D V+Y  +I
Sbjct: 274  RGCKLDSVSYTNII 287


>gb|EXB57399.1| hypothetical protein L484_016452 [Morus notabilis]
          Length = 907

 Score =  207 bits (526), Expect = 9e-51
 Identities = 128/320 (40%), Positives = 181/320 (56%), Gaps = 5/320 (1%)
 Frame = +3

Query: 186  MRIYVASSSHSPWLLRSYR--KSFCSASTLNSQDPVLKEKPISESGISETSDSKTGFFDK 359
            MR  + SS  SP L RS+   +  C   T+  +  V+ E P+SE+               
Sbjct: 1    MRSSITSSPISPLLRRSFLHPRYLCHEFTIPDKS-VISESPVSENA-------------- 45

Query: 360  PISETTFPVKPSSKIAFLEEPNLEIGVSDKPTSEGARNAFTQFQQEISSQDTNTVLNQDL 539
                      PS     L+E   E   ++KPTSE   N      + + S  T+  L Q  
Sbjct: 46   ---------SPSLATKSLDEFTSESNSAEKPTSEVDPN------RNLCSLSTD--LTQAH 88

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVW-DARKLLNQCL 716
            VI  LL++++DP   LKYFKWAE+ RGF+RGVD+  + LHIL+ S+     A+ LL+  +
Sbjct: 89   VINTLLSHKNDPYSALKYFKWAERMRGFIRGVDSFSVLLHILMGSQETHGSAQSLLSLYV 148

Query: 717  SGDSSPCATILVDRLTETSKRCGLNP--LLFSYVLNSYVRAGRIEDAAECFDRMIKYDIV 890
            SGDS P A + VD L + +KR    P   +F+Y+LNSY+RA RI DA  CF++M+++DI+
Sbjct: 149  SGDSGPSANVFVDHLFDCAKRFEFEPDSRIFNYLLNSYIRANRIRDAVHCFNKMVEHDIL 208

Query: 891  PGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKY 1070
            P + + NILL AL+R NM  +A DL+  M+ RGV  D  T+ ++M ACLK+ + EEAEKY
Sbjct: 209  PWVPFMNILLTALIRRNMSREALDLHHKMVLRGVFGDRVTVPVLMRACLKKEREEEAEKY 268

Query: 1071 FREMKTRGFEFDPVTYNTVI 1130
            FRE   RG E D   Y+ +I
Sbjct: 269  FREATVRGIELDAAAYSFLI 288



 Score = 71.2 bits (173), Expect = 7e-10
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
 Frame = +3

Query: 654  LHILVNSRNVWDARKLLNQCLSGDSSPCATILVDRLTETSKRCGL-NPLLFSYVLNSYVR 830
            LH L+  +   DA KL N+ +                     CG+ N  L++ +LNS   
Sbjct: 428  LHGLLKFQKFEDASKLFNEAVE--------------------CGVANTFLYNTLLNSLCN 467

Query: 831  AGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFT 1010
             G++ +A   +D MI  D+VP +   + ++    R   +  A +L+  MLER V  D FT
Sbjct: 468  EGKVNEACALWDNMISKDVVPNVVSYSSMILCHCRKGALDMAHNLFTEMLERSVKPDVFT 527

Query: 1011 LDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
              I++  C K+G  + A   + +M          TYNT+I
Sbjct: 528  YSILIDGCFKKGDVKRAFNVYEQMMAVNIAPTDYTYNTII 567


>emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  205 bits (521), Expect = 3e-50
 Identities = 108/207 (52%), Positives = 144/207 (69%), Gaps = 3/207 (1%)
 Frame = +3

Query: 519  TVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWD-AR 695
            T L+Q+ VI+ LL + +DP   L+YFK AE QRGF+RGVDA C+ LHIL+ S      AR
Sbjct: 56   TPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHAR 115

Query: 696  KLLNQCLSGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDR 869
            KLLN+ +SGDS P   + VD L   +KR    L+  +F+Y+LN+Y+RA RIE+A +CF+ 
Sbjct: 116  KLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNA 175

Query: 870  MIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGK 1049
            MI  D++P + Y NILL ALVR NMIG+ RDLY  M+ RG+  D FT+ +M+ ACLKEG+
Sbjct: 176  MICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGR 235

Query: 1050 PEEAEKYFREMKTRGFEFDPVTYNTVI 1130
             EEAE+YFRE K RG + D   Y+ +I
Sbjct: 236  VEEAEEYFRETKERGVKLDAGAYSIII 262



 Score = 68.6 bits (166), Expect = 5e-09
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
 Frame = +3

Query: 633  VDALCITLHILVNSRNVWDARK----LLNQCLSGDSSPCATILVDRLTETSKRCGLNPLL 800
            +D  C  L  +VN   V +       +L  C  G+    +++  D L    K    N + 
Sbjct: 445  MDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKP---NVVT 501

Query: 801  FSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGML 980
            +S +++   + G  E A + FD+M+  +I P     N ++N L +   + +ARD  K  L
Sbjct: 502  YSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFL 561

Query: 981  ERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            E G    C T + ++   +KEG  + A   +REM   G   + VTY ++I
Sbjct: 562  EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLI 611


>ref|XP_006853110.1| hypothetical protein AMTR_s00038p00132760 [Amborella trichopoda]
            gi|548856749|gb|ERN14577.1| hypothetical protein
            AMTR_s00038p00132760 [Amborella trichopoda]
          Length = 757

 Score =  195 bits (495), Expect = 3e-47
 Identities = 111/275 (40%), Positives = 158/275 (57%)
 Frame = +3

Query: 306  SESGISETSDSKTGFFDKPISETTFPVKPSSKIAFLEEPNLEIGVSDKPTSEGARNAFTQ 485
            S+S I + S S+      P +    P+ P +       PN +I   D+  S  + +  +Q
Sbjct: 30   SQSQIPDGSSSQV-----PETPPASPLPPETTPERTPLPNAQI---DEDISL-SHSKTSQ 80

Query: 486  FQQEISSQDTNTVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHIL 665
              +EI      TVL Q+ V+E LLNNQ  P   LKYF+WA+ QRG++RG++ LCITLHIL
Sbjct: 81   IDREILFSPAKTVLTQEHVVEVLLNNQSHPKASLKYFRWADAQRGYLRGLEPLCITLHIL 140

Query: 666  VNSRNVWDARKLLNQCLSGDSSPCATILVDRLTETSKRCGLNPLLFSYVLNSYVRAGRIE 845
              ++N+   RKL+    S  S P A   +D L ETSKRC  +P +F  VLN Y R G + 
Sbjct: 141  ARNKNLPSVRKLIKFFFSKKSIPGAPAFIDCLMETSKRCESHPQVFDLVLNGYTRHGSVP 200

Query: 846  DAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMM 1025
            ++ E + R++   + P I   N+ L  LVR + + +A +LY+ M++RG   D   L  M+
Sbjct: 201  ESVEAYKRLVSNGVFPSIECINLHLRKLVRLDFVDEAWNLYREMVDRGADLDSEILVTMV 260

Query: 1026 HACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            HAC K GKPEEAE +FREMK +G + D V Y +VI
Sbjct: 261  HACSKGGKPEEAEDFFREMKAKGCKLDAVIYTSVI 295


>ref|XP_007206864.1| hypothetical protein PRUPE_ppa1027201mg, partial [Prunus persica]
            gi|462402506|gb|EMJ08063.1| hypothetical protein
            PRUPE_ppa1027201mg, partial [Prunus persica]
          Length = 782

 Score =  188 bits (477), Expect = 4e-45
 Identities = 101/205 (49%), Positives = 134/205 (65%), Gaps = 3/205 (1%)
 Frame = +3

Query: 525  LNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVW-DARKL 701
            L Q  VI  LL+++ +P   LK+F WAEK+RGF++GVDA C+ LHIL         A+ L
Sbjct: 3    LTQTKVISTLLSHRSEPNSALKHFIWAEKERGFLKGVDAFCVLLHILTGFEETHVRAQIL 62

Query: 702  LNQCLSGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMI 875
            LNQ  SGDS P   +  DRL + +KR    L   +FSY+LNSYVRA RI+ A +CFDRMI
Sbjct: 63   LNQYASGDSGPSQQVFFDRLVDCAKRFDFELESRVFSYLLNSYVRANRIKYAIDCFDRMI 122

Query: 876  KYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPE 1055
            + ++ P ++  NILL  LVR  MI  AR+LY  M+ RG+  D  TL +MMHACLKEG+P 
Sbjct: 123  ELELYPCVTCMNILLVELVRRKMIVNARELYDKMVLRGMGGDRATLRVMMHACLKEGQPN 182

Query: 1056 EAEKYFREMKTRGFEFDPVTYNTVI 1130
            +AE+YFR+ + RG E D  ++   I
Sbjct: 183  KAEEYFRQARARGIELDAASHGVAI 207



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 22/246 (8%)
 Frame = +3

Query: 459  EGARNAFTQFQQEI--SSQDTNTVLNQDLVIEFLLNNQHDPVLVLKYFKWAE-KQRGFVR 629
            EGA N+     +E+       N V     V  F  +NQ D  L +    W + K++G   
Sbjct: 527  EGAMNSALAVYREMREGGVSPNVVTYTSFVNGFCKSNQIDLALQM----WNDMKKKGIKL 582

Query: 630  GVDALCITLHILVNSRNVWDARKLLNQCLSGDSSPCATI-------------------LV 752
             V A C  +      R++  ARKL ++ L    SP   +                   L 
Sbjct: 583  DVTAYCALIDGFCKRRDMGTARKLFSEFLEVGLSPSTAVYSSMIWGFQNLNNMEAALDLH 642

Query: 753  DRLTETSKRCGLNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALV 932
             ++      C L    ++ +++  ++ G ++ A + +  M++  IVP I    +L+N L 
Sbjct: 643  KKMISEGIPCDLKA--YTTLIDGLLKRGELQVATDLYSEMLQKKIVPDIKTYTVLINGLC 700

Query: 933  RANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPV 1112
                +  AR + + M +R ++        ++    KEG  +EA +   EM  RG   D +
Sbjct: 701  NKGQLENARKILEDMNKRSMTPSVHIYSTLIAGNFKEGNLQEAFRLHDEMLDRGLVPDDI 760

Query: 1113 TYNTVI 1130
            TY+ ++
Sbjct: 761  TYDILV 766



 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
 Frame = +3

Query: 783  GLNPLLFSY--VLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKA 956
            GL P +F+Y  ++  Y R G I+ A + F+ M+   I P     NI+++ L +A    +A
Sbjct: 439  GLKPNVFTYSILIKGYFRKGDIKRALDVFNDMVAAKITPTEFTVNIVIDGLCKAGCTSEA 498

Query: 957  RDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
             D    ++ERG    C + + ++   +KEG    A   +REM+  G   + VTY + +
Sbjct: 499  SDRLNKIVERGFVPGCMSYNNIIDGFIKEGAMNSALAVYREMREGGVSPNVVTYTSFV 556


>ref|XP_002309609.2| pentatricopeptide repeat-containing family protein [Populus
            trichocarpa] gi|550337148|gb|EEE93132.2|
            pentatricopeptide repeat-containing family protein
            [Populus trichocarpa]
          Length = 841

 Score =  187 bits (476), Expect = 5e-45
 Identities = 104/242 (42%), Positives = 150/242 (61%), Gaps = 3/242 (1%)
 Frame = +3

Query: 414  EEPNLEIGVSDKPTSEGARNAFTQFQQEISSQDTNTVLNQDLVIEFLLNNQHDPVLVLKY 593
            E PN+ I  S+ P S+   +  T F  + +    ++ L Q   I+ LLN+Q+DP   L Y
Sbjct: 28   ELPNIPI--SETPLSQNP-HPNTNFPGKSAPTSQDSFLTQTQYIDTLLNHQNDPQSALSY 84

Query: 594  FKWAEKQRGFVRGVDALCITLHILVNSRNVWD-ARKLLNQCLSGDSSPCATILVDRLTET 770
            F WA ++RG ++ VDALC+ LHIL  S      AR LLN+  S D  P  +++V RL E+
Sbjct: 85   FTWASQKRGLIKSVDALCVLLHILTKSTETCGKARNLLNRFASDDWGPVPSVVVSRLIES 144

Query: 771  SKRCGL--NPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANM 944
            S+R     +  +F+Y+LNSYV+  RI DA +CF+ +I+ DIVP ++  NI L+ LV+ NM
Sbjct: 145  SRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNM 204

Query: 945  IGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNT 1124
            I +ARD+Y  M  +GV  DC T+ +M+ A ++EGK EEAE +FRE K +G E D   Y+ 
Sbjct: 205  IREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSI 264

Query: 1125 VI 1130
            VI
Sbjct: 265  VI 266



 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
 Frame = +3

Query: 699  LLNQCLSGDSSPCATILVDRLTETSKRCGLNPLLFSY--VLNSYVRAGRIEDAAECFDRM 872
            +L  C  GD      + V+ L +     GL P L +Y  +++ Y + G  E A   +DRM
Sbjct: 475  ILGHCQQGDMDSANGVFVEMLEK-----GLKPNLITYSVLMDGYFKKGDTEYAFGLYDRM 529

Query: 873  IKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKP 1052
               +I P     NI++N L +A    +++D  K +++ G    C T + ++   +KEG  
Sbjct: 530  RGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSV 589

Query: 1053 EEAEKYFREMKTRGFEFDPVTYNTVI 1130
              A   + EM   G   +  TY  +I
Sbjct: 590  NSALAVYTEMCKIGVSPNVFTYTNLI 615


>ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545497|gb|EEF47002.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 927

 Score =  185 bits (469), Expect = 3e-44
 Identities = 106/263 (40%), Positives = 159/263 (60%), Gaps = 8/263 (3%)
 Frame = +3

Query: 366  SETTFPVKPSSKIAFLEEPNLEIGVSDKPTSEGARNAFTQFQQEI-----SSQDTNTVLN 530
            S+  FP +P S +     PN      +   S  + N      +++     +SQD+  VL 
Sbjct: 26   SQPQFPNEPQSSLYQNSYPNFSYAEKNSQDSNFSENLIFLKSRQVELTKPASQDS--VLA 83

Query: 531  QDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILV-NSRNVWDARKLLN 707
            +  VI+ LL+ + DP   L YFK  E  RGFVR +D+LC+ LHIL  +S  +  A+ LLN
Sbjct: 84   RTNVIDTLLSYKRDPYSALTYFKQLECTRGFVRSLDSLCVLLHILTRSSETLKQAQNLLN 143

Query: 708  QCLSGDSSPCATILVDRLTETSKRCGLNP--LLFSYVLNSYVRAGRIEDAAECFDRMIKY 881
            + +SGDS P   ILVD    ++KR   +    +++Y+LNSY++A ++ DA  CF+R+++ 
Sbjct: 144  RFISGDSGPMPNILVDHFIGSTKRFDFDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVES 203

Query: 882  DIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEA 1061
            DIVP I + N LL ALV+ +MI +AR++Y+ M+ +GV  DCFT+ IMM A LK+   EEA
Sbjct: 204  DIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEA 263

Query: 1062 EKYFREMKTRGFEFDPVTYNTVI 1130
            +K+F E K+RG + D   Y+ VI
Sbjct: 264  KKFFLEAKSRGVKLDAAAYSIVI 286



 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
 Frame = +3

Query: 699  LLNQCLSGDSSPCATILVDRLTETSKRCGLNP--LLFSYVLNSYVRAGRIEDAAECFDRM 872
            +L  C  G+    A++  D L      CGL P  + +S +++ Y + G  E A   FDRM
Sbjct: 495  ILGHCRQGNLDMAASVFSDMLD-----CGLKPNVITYSILMDGYFKNGDTEYAFYVFDRM 549

Query: 873  IKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKP 1052
            +  +IVP     NI +N L +     +A+D+ K  +E+G    C T + +M   +KEG  
Sbjct: 550  VDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSV 609

Query: 1053 EEAEKYFREMKTRGFEFDPVTYNTVI 1130
              A   +REM   G   + +TY T+I
Sbjct: 610  SSALTAYREMCESGVSPNVITYTTLI 635


>ref|XP_004514126.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
            mitochondrial-like [Cicer arietinum]
          Length = 850

 Score =  184 bits (467), Expect = 6e-44
 Identities = 96/208 (46%), Positives = 139/208 (66%), Gaps = 3/208 (1%)
 Frame = +3

Query: 516  NTVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWDA- 692
            +T  +Q+ +++ LL ++ +P   LK+FK  E++RGFV+ VD   + L IL ++     + 
Sbjct: 71   STSNSQNQILDTLLTHKSNPKSALKFFKGVERKRGFVKTVDVFSLLLQILSSTPQTHSSL 130

Query: 693  RKLLNQCLSGDSSPCATILVDRLTETSKRCGL--NPLLFSYVLNSYVRAGRIEDAAECFD 866
            R LLN  + GDSSP   +LV+ L E S R G   +  +F+Y+LNSYVRA +I DA ECF 
Sbjct: 131  RNLLNNYVFGDSSPSPKVLVEHLLECSGRYGFESDSRVFNYLLNSYVRANKIVDAVECFR 190

Query: 867  RMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEG 1046
             ++++D++P +   NILL A+VR NMI  AR LY  M+ERG+  DCFTL ++M ACLKEG
Sbjct: 191  TLLEHDVIPWVPIMNILLTAMVRRNMICNARQLYDEMVERGMYGDCFTLHVVMRACLKEG 250

Query: 1047 KPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            K EEAEK+F+E K RG + D  +Y+ V+
Sbjct: 251  KFEEAEKFFKEAKGRGLKLDAASYSIVV 278


>ref|XP_007013815.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
            cacao] gi|508784178|gb|EOY31434.1| Pentatricopeptide
            repeat superfamily protein, putative [Theobroma cacao]
          Length = 1159

 Score =  183 bits (464), Expect = 1e-43
 Identities = 111/264 (42%), Positives = 157/264 (59%), Gaps = 10/264 (3%)
 Frame = +3

Query: 369  ETTFPVKPSSKIAFLEE-------PNLEIGVSDKPTSEGARNAFTQFQQEISSQDTNTVL 527
            +T  P  P+    FLE+       P+  I  SD P S               +QDT+  L
Sbjct: 324  QTPLPGNPNPNTNFLEKVTSDSHCPSKSISDSDSPGSLIPPTPKDPRLTPSLTQDTS--L 381

Query: 528  NQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNV-WDARKLL 704
             +  VI  LL ++++P   LKYF++ E +RGFVR +D  C+ LHILV S+      + LL
Sbjct: 382  TRTHVINTLLIHRNNPESALKYFRFVENKRGFVRSIDVFCVLLHILVGSQQTNKQVKYLL 441

Query: 705  NQCLSGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIK 878
            N+ ++GDS P   + +D L + +KR    L+  +F+Y+LNSYVR  RI+DA +CF+ MI+
Sbjct: 442  NRFVAGDSGPTPIVFLDHLIDIAKRFDFELDSRVFNYLLNSYVRV-RIDDAVDCFNGMIE 500

Query: 879  YDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEE 1058
            +DIVP + + NILL ALVR N+I KAR+LY  M+  GV  D  T+ +MM A LK+GKP E
Sbjct: 501  HDIVPMLPFMNILLTALVRGNLIDKARELYDKMVSIGVRGDRVTVLLMMRAFLKDGKPWE 560

Query: 1059 AEKYFREMKTRGFEFDPVTYNTVI 1130
            AE++F+E K RG E D   Y+  I
Sbjct: 561  AEEFFKEAKARGTELDAAVYSIAI 584



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
 Frame = +3

Query: 699  LLNQCLSGDSSPCATILVDRLTETSKRCGLNPLLFSY--VLNSYVRAGRIEDAAECFDRM 872
            +L  C +G+     T+  + L       G+ P + +Y  +++ + + G  E A + FD M
Sbjct: 793  ILAHCRAGNMDMAHTVFSEMLER-----GIKPTVITYTILMDGHFKKGNAEQALDVFDEM 847

Query: 873  IKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKP 1052
            +  +I P     NI++N L +     +ARD+ K  +++G    C T + +++  +KEG  
Sbjct: 848  VGVNITPSDFTFNIIINGLAKVGRTSEARDMLKKFVDKGFVPICLTYNSIINGFVKEGAM 907

Query: 1053 EEAEKYFREMKTRGFEFDPVTYNTVI 1130
              A   +REM   G   + VTY T+I
Sbjct: 908  NSALAVYREMCESGLSPNVVTYTTLI 933


>gb|EYU21955.1| hypothetical protein MIMGU_mgv1a001349mg [Mimulus guttatus]
          Length = 836

 Score =  179 bits (455), Expect = 1e-42
 Identities = 100/219 (45%), Positives = 140/219 (63%), Gaps = 4/219 (1%)
 Frame = +3

Query: 486  FQQEISSQDTNTVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGV-DALCITLHI 662
            FQ+ IS    N  L+Q  V+E LL+N +DP   L YF+WAEKQRGFVR + D+  + LHI
Sbjct: 59   FQKPISE---NPRLSQANVVETLLSNFNDPRSALDYFRWAEKQRGFVREIGDSFLVLLHI 115

Query: 663  LVNSR-NVWDARKLLNQCLSGDSSPCATILVDRLTETSKRCGL--NPLLFSYVLNSYVRA 833
            LV+S  +   AR LLN  LS DS+P   +LV RL + S + G   +P +F Y LN YVRA
Sbjct: 116  LVSSHYHHGSARNLLNNYLSSDSAPSGGVLVQRLIDCSDKFGFRRSPRIFDYALNGYVRA 175

Query: 834  GRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTL 1013
             R +DA +CF  ++   ++P +   N  L++L+R +MI +AR L+ G++ + +S DC T+
Sbjct: 176  QRYKDAEDCFYALVSRGVIPCVRILNNFLHSLIRTSMIDEARGLFGGIVSKKLSYDCATV 235

Query: 1014 DIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            ++MM A L+EGK EEAEK+F E K  G   DP  YNT +
Sbjct: 236  NMMMCASLREGKTEEAEKFFLEAKRSGIILDPFVYNTAV 274



 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
 Frame = +3

Query: 789  NPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGI-SYRNILLNALVRANMIGKARDL 965
            N   ++ +++ +   GR+ DA   +D+MI + I P + SY N++L    R   +  A  L
Sbjct: 440  NVFTYNNLISWFCEGGRLGDAIRVWDKMIDHGIEPSVVSYNNMILGNC-RKGFMDVAAAL 498

Query: 966  YKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
               M E+ V  +  T  I++    K+G+ E+A   F  M T G     VTYNTVI
Sbjct: 499  LSEMAEKNVKPNVITYSILVDGYFKKGETEKAIALFDSMLTSGISPTDVTYNTVI 553


>ref|XP_006450492.1| hypothetical protein CICLE_v10010816mg [Citrus clementina]
            gi|568859583|ref|XP_006483317.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g54980,
            mitochondrial-like [Citrus sinensis]
            gi|557553718|gb|ESR63732.1| hypothetical protein
            CICLE_v10010816mg [Citrus clementina]
          Length = 850

 Score =  176 bits (447), Expect = 1e-41
 Identities = 118/320 (36%), Positives = 166/320 (51%), Gaps = 5/320 (1%)
 Frame = +3

Query: 186  MRIYVASSSHSPWLLRSYR--KSFCSASTLNSQDPVLKEKPISESGISETSDSKTGFFDK 359
            MR  + SS   P+++R ++  KS CS        P   EKPIS               + 
Sbjct: 1    MRSSLTSSPIRPFIIRPFKNTKSICS-------QPQSSEKPISS--------------ES 39

Query: 360  PISETTFPVKPSSKIAFLEEPNLEIGVSDKPTSEGARNAFTQFQQEISSQDTNTVLNQDL 539
            P+SE  FP K +    F   P      + +PT                       L+Q  
Sbjct: 40   PVSEN-FPEKITKGSHFSGNPIFPESNTFQPTD----------------------LSQTS 76

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWD-ARKLLNQCL 716
            VI  LL+ +++PV   +YFK  E++RGF++ +D  C+ LHIL+  R     AR LLN  +
Sbjct: 77   VISSLLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYV 136

Query: 717  SGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIV 890
            SG S P +  ++D L ET+KR    L+  +FSY+L SYVRA RI DA +C + MI+ DI+
Sbjct: 137  SGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDII 196

Query: 891  PGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKY 1070
            P +   N +L ALVR N+I +A++ Y  M  +G+  D  T+ +MM ACLKE   EEAEKY
Sbjct: 197  PLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKY 256

Query: 1071 FREMKTRGFEFDPVTYNTVI 1130
            FR+ K  G + D   Y  VI
Sbjct: 257  FRDAKALGVKLDARAYRMVI 276


>ref|XP_007136983.1| hypothetical protein PHAVU_009G090400g [Phaseolus vulgaris]
            gi|561010070|gb|ESW08977.1| hypothetical protein
            PHAVU_009G090400g [Phaseolus vulgaris]
          Length = 741

 Score =  172 bits (435), Expect = 3e-40
 Identities = 93/216 (43%), Positives = 136/216 (62%), Gaps = 4/216 (1%)
 Frame = +3

Query: 495  EISSQDTNTVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNS 674
            E  S ++  + +Q+ V++ LL  + DP+  L +FK  E++RGFV+ VD LC+ L IL +S
Sbjct: 50   EAQSPESPLIPSQNEVLDTLLLRKADPISALMFFKQVERKRGFVKTVDILCLLLQILASS 109

Query: 675  RNVW-DARKLLNQCLSGDSSPCATILVDRLTETSKRCGL---NPLLFSYVLNSYVRAGRI 842
             +   DA+ LLN  + GDS+PCA +LV+ L E ++R G    +  +F+Y+LNSYVRA +I
Sbjct: 110  PDTHGDAKYLLNNYVFGDSAPCAKVLVELLVECAERYGFELSDSRVFNYLLNSYVRANKI 169

Query: 843  EDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIM 1022
             DA ECF  M+++ ++P +   NILL A+VR NM      +Y  M+ER +  DC+TL I+
Sbjct: 170  TDAVECFRTMLEHGVLPWVPIVNILLTAMVRRNMAYNVCQVYDEMVERELYGDCYTLHIL 229

Query: 1023 MHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            M ACLK G+  EA  YF E   RG + D   Y+ VI
Sbjct: 230  MRACLKGGRFAEAWNYFEEAVGRGLKLDAAAYSIVI 265



 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 29/110 (26%), Positives = 55/110 (50%)
 Frame = +3

Query: 801  FSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGML 980
            F+ ++N   + GR+ +A +  +  IK   VP     N +++  V+   I  A   Y+ M 
Sbjct: 540  FNTIMNGLCKVGRVSEAKDKLNTFIKQGFVPTSMTYNCIIDGFVKEGAIDSAESTYREMC 599

Query: 981  ERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
            + G+S +  T   +++   K  K + A K + +MK++G E D   Y+ +I
Sbjct: 600  DSGISPNVITCTTLINGFFKTNKIDLALKMYDDMKSKGLELDITAYSALI 649


>ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355508380|gb|AES89522.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  167 bits (423), Expect = 8e-39
 Identities = 86/196 (43%), Positives = 128/196 (65%), Gaps = 3/196 (1%)
 Frame = +3

Query: 552  LLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILV-NSRNVWDARKLLNQCLSGDS 728
            LL+++ +P   LK+F   E++RGFV+ VD + + +HIL  NS+     + LLN  + GD+
Sbjct: 67   LLSHKSNPKSALKFFHQVERKRGFVKTVDFISLLIHILSSNSKTCSSLQFLLNNYVFGDA 126

Query: 729  SPCATILVDRLTETSKRCGL--NPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGIS 902
            +P A + V+ L E S R G   +  +F+Y+L S+VR  +I DA ECF  M+++D+VP + 
Sbjct: 127  TPSAKVFVECLLECSGRYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVP 186

Query: 903  YRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREM 1082
              N LL A+VR NM+  AR LY  M+ERG+  DC+TL ++M AC+KEGK EE EK+F+E 
Sbjct: 187  IMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEA 246

Query: 1083 KTRGFEFDPVTYNTVI 1130
            K RG E D   Y+ ++
Sbjct: 247  KGRGLEVDAAAYSILV 262


>ref|XP_004245400.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
            mitochondrial-like [Solanum lycopersicum]
          Length = 850

 Score =  147 bits (372), Expect = 6e-33
 Identities = 84/211 (39%), Positives = 127/211 (60%), Gaps = 4/211 (1%)
 Frame = +3

Query: 501  SSQDTNTVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGV-DALCITLHILVNSR 677
            +S+D     N   V++ LL+++ DP    +YF+ A  QRGF+    D   + LHILVNS 
Sbjct: 62   NSEDVKFTKNH--VVDVLLSHRDDPDSAYRYFQTARLQRGFLHSKSDPFFVLLHILVNSA 119

Query: 678  -NVWDARKLLNQCLSGDSSPCATILVDRLTETSKRC--GLNPLLFSYVLNSYVRAGRIED 848
             +   +R+LL+   S DS P AT++ + L +  K    GLNP +F+++++S ++A R+ D
Sbjct: 120  MHQHKSRRLLDYYASSDSGPSATVVFNGLVKCGKTFDFGLNPKIFNFLVSSCMKANRLND 179

Query: 849  AAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMH 1028
            A +CF+ M+++DI+  I   N LL  LVR  M+G A DLY  ++ RG   DC T+ I+M 
Sbjct: 180  AIDCFNAMLEHDIMLWIPIMNSLLKKLVRQGMVGVAEDLYTDIVSRGTHYDCGTVHILME 239

Query: 1029 ACLKEGKPEEAEKYFREMKTRGFEFDPVTYN 1121
            ACL+EGK +EA K   E K  G +FD   Y+
Sbjct: 240  ACLREGKMKEAVKLLEETKMSGIKFDAGLYS 270



 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 30/120 (25%), Positives = 61/120 (50%)
 Frame = +3

Query: 771  SKRCGLNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIVPGISYRNILLNALVRANMIG 950
            +K   L+ + ++ +++ + +   ++ A+E FD +++  I P +   N +++  +  N + 
Sbjct: 644  NKEIKLDVIAYAVLIDGFCKRRDMKSASELFDEILQVGISPNLFVYNSMMSGFINVNNME 703

Query: 951  KARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
             A  L   M+  GV CD  T   ++   LK+GK + A   F EM  +G   D +TY  ++
Sbjct: 704  AALVLRDKMINEGVPCDLKTYTTLIDGLLKDGKIDLASHLFTEMLGKGIMPDDITYTVLV 763


>ref|XP_006364273.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
            mitochondrial-like isoform X1 [Solanum tuberosum]
            gi|565397380|ref|XP_006364274.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g54980,
            mitochondrial-like isoform X2 [Solanum tuberosum]
          Length = 854

 Score =  142 bits (358), Expect = 3e-31
 Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
 Frame = +3

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGV-DALCITLHILVNSR-NVWDARKLLNQC 713
            V++ LL+++ DP    ++F+ A  QRGF+    D   + LHILVNS  +   AR+LL+  
Sbjct: 77   VVDVLLSHRDDPDSAYRHFQTARLQRGFLHSKSDPFFVLLHILVNSAMHQHKARRLLDYY 136

Query: 714  LSGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDI 887
             S DS P ATI+ + L +  K     LNP +F+++++S V+A R+ DA +CF+ M+++DI
Sbjct: 137  ASSDSGPSATIIFNGLVKCGKTFDFELNPKIFNFLISSCVKANRLNDAIDCFNGMLEHDI 196

Query: 888  VPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEK 1067
            +  I   N LL  LVR +M+G A DLY  ++ RG   DC T+ I+M ACL+EG+ +EA K
Sbjct: 197  MLWIPIMNRLLKELVRQDMVGVAGDLYTDIVSRGTHYDCRTVHILMAACLREGRIKEAVK 256

Query: 1068 YFREMKTRGFEFDPVTYN 1121
               E K  G +FD   Y+
Sbjct: 257  LLEEAKMSGIKFDAGLYS 274



 Score = 58.9 bits (141), Expect = 4e-06
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
 Frame = +3

Query: 699  LLNQCLSGDSSPCATILVDRLTETSKRCGLNPLLFSYVLNSYVRAGRIEDAAECFDRMIK 878
            +L  C +G+    A  L  +L E   +   N + +S +++ Y R G  + A   FD+M+ 
Sbjct: 486  ILGNCRNGNMDK-ALDLFSQLPERHLKA--NVVTYSILIDGYFRKGDADKAENMFDQMVS 542

Query: 879  YDIVPGISYRNILLNALVRANMIGKARDLYKGMLERG-VSCDCFTLDIMMHACLKEGKPE 1055
              I P     N +++ + +     +A+DL K ++E G +   C + + ++   LKEG   
Sbjct: 543  SGISPTDYTFNTVISGMSKVGKTSEAKDLLKKIVEGGDLIPTCMSYNSLIDGFLKEGDVS 602

Query: 1056 EAEKYFREMKTRGFEFDPVTYNTVI 1130
             A   +REM   G   D VTY T+I
Sbjct: 603  SALAVYREMCNSGISPDVVTYTTLI 627


>ref|XP_004301621.1| PREDICTED: pentatricopeptide repeat-containing protein At2g39230,
            mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 374

 Score =  142 bits (357), Expect = 3e-31
 Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 4/215 (1%)
 Frame = +3

Query: 498  ISSQDTNTVLNQDLVIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSR 677
            +SSQ       Q  ++  LL+++ DP   L  FK        +  +  + + LHIL+   
Sbjct: 22   LSSQPNPLPPTQTQLLTSLLSHKSDPSSALHLFKTNPSS---LHSLHTVAVMLHILMPFP 78

Query: 678  NVWD-ARKLLNQCLSGDSSPCATILVDRLTETSKRCGLNPL---LFSYVLNSYVRAGRIE 845
                 A+ LL   +SG S P   +LVD L + +KR   + +   +FSY+LNSYVRA RI 
Sbjct: 79   ETHARAKTLLYSYVSGGSGPAPALLVDSLLDCAKRFEFDSVSSPVFSYLLNSYVRADRIR 138

Query: 846  DAAECFDRMIKYDIVPGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMM 1025
            DA  C +RM++  +   +   NI+L AL R NM  +A++LY GM+ RGV  DC TL +MM
Sbjct: 139  DAVNCLERMVEIGVCGSVECMNIVLKALFRRNMFKEAKELYGGMVGRGVGGDCATLHVMM 198

Query: 1026 HACLKEGKPEEAEKYFREMKTRGFEFDPVTYNTVI 1130
              C KEGKP EAE+YFR  + RG   D   Y+  I
Sbjct: 199  RVCFKEGKPGEAEEYFRNARGRGIAADGELYDVAI 233


>ref|NP_181456.1| pentatricopeptide repeat protein LOJ [Arabidopsis thaliana]
            gi|75100007|sp|O80958.1|PP194_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At2g39230, mitochondrial; AltName: Full=Protein LATERAL
            ORGAN JUNCTION; Flags: Precursor
            gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis
            thaliana] gi|330254554|gb|AEC09648.1| pentatricopeptide
            repeat protein LOJ [Arabidopsis thaliana]
          Length = 867

 Score =  139 bits (350), Expect = 2e-30
 Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 10/260 (3%)
 Frame = +3

Query: 381  PVKPSSKIAFLEEP-NLEIGVSDKPTSEGA------RNAFTQFQQEISSQDTNTVLNQDL 539
            P   SS+  FL  P N    +SD  T   +      + +        S+ +T   ++   
Sbjct: 22   PKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSVPNHSPLTSTSETENHVDDAR 81

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWD-ARKLLNQCL 716
            VIE LL  ++DPV  L+Y  W +       G D   + +HIL++S +  D A  LL   +
Sbjct: 82   VIEVLLGRRNDPVSALQYCNWVKPLHRLCEGGDVFWVLIHILLSSIHTHDRASNLLVMFV 141

Query: 717  SGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIV 890
            S + +    ++V+ L ++SKR G  L P  F+Y+LN+Y+R  R++ A +CF  M+   +V
Sbjct: 142  SNNPTLIPNVMVNNLVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVV 201

Query: 891  PGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKY 1070
            P + Y N +L++LVR+N+I +A+++Y  M+  GV+ D  T  ++M A L+E KPEEA K 
Sbjct: 202  PFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKI 261

Query: 1071 FREMKTRGFEFDPVTYNTVI 1130
            FR + +RG E D + ++  +
Sbjct: 262  FRRVMSRGAEPDGLLFSLAV 281


>ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297325627|gb|EFH56047.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 867

 Score =  138 bits (348), Expect = 4e-30
 Identities = 87/260 (33%), Positives = 144/260 (55%), Gaps = 10/260 (3%)
 Frame = +3

Query: 381  PVKPSSKIAFLEEP-NLEIGVSDKPTSEGARNAFTQ------FQQEISSQDTNTVLNQDL 539
            P   SS+  FL  P N    +SD  T   +   F            IS+ +T+  ++   
Sbjct: 22   PKPISSQYRFLHPPDNQSRDISDSTTEVFSELEFPHKASGPNHSPLISTSETDNHVDDAH 81

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWD-ARKLLNQCL 716
            VIE LL  ++DPV  L+Y  W +  R    G D   + +HIL +S +  D A  LL   +
Sbjct: 82   VIEVLLGRRNDPVSALQYCNWVKPLRSLCEGGDVFWVLIHILFSSPHTHDRASNLLVMFV 141

Query: 717  SGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIV 890
            S + +   + +V+ L ++SKR    L+   F+Y+LN+Y+R  R++ A +CF+ M+  ++V
Sbjct: 142  SSNPTLIPSAMVNNLVDSSKRFDFELSSRAFNYLLNAYIRNRRMDYAVDCFNLMVDRNVV 201

Query: 891  PGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKY 1070
            P + Y N +L++LVR+N+I +A+++Y  M+  GV+ D  T  ++M A L+E KPEEA K 
Sbjct: 202  PFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAMKI 261

Query: 1071 FREMKTRGFEFDPVTYNTVI 1130
            FR + +RG E D + ++  +
Sbjct: 262  FRRVMSRGAEPDGLLFSLAV 281


>ref|XP_006293664.1| hypothetical protein CARUB_v10022620mg [Capsella rubella]
            gi|482562372|gb|EOA26562.1| hypothetical protein
            CARUB_v10022620mg [Capsella rubella]
          Length = 861

 Score =  127 bits (320), Expect = 7e-27
 Identities = 70/200 (35%), Positives = 122/200 (61%), Gaps = 3/200 (1%)
 Frame = +3

Query: 540  VIEFLLNNQHDPVLVLKYFKWAEKQRGFVRGVDALCITLHILVNSRNVWD-ARKLLNQCL 716
            VIE LL  ++DPV  L+Y  W +       G D   + +HIL +S +  D A  LL   +
Sbjct: 88   VIEVLLGRRNDPVSALQYCNWVKPLPHLYEGGDVFWVLVHILFSSPHTHDRASNLLVMFV 147

Query: 717  SGDSSPCATILVDRLTETSKRCG--LNPLLFSYVLNSYVRAGRIEDAAECFDRMIKYDIV 890
            S + +   +++V+ L E+++R G  L+   F+Y+LN+Y+R  R++ A +CF+ M++ +++
Sbjct: 148  SSNPTLIPSVIVNYLVESAERYGFELSSRAFNYLLNAYIRNRRMDYAVDCFNLMVERNVI 207

Query: 891  PGISYRNILLNALVRANMIGKARDLYKGMLERGVSCDCFTLDIMMHACLKEGKPEEAEKY 1070
            P + Y N +L++LVR+N+I +A+++Y  M+  GV+ D  T  ++M A L+E   EEA K 
Sbjct: 208  PFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERNSEEAVKI 267

Query: 1071 FREMKTRGFEFDPVTYNTVI 1130
            FR + +RG E D + Y+  +
Sbjct: 268  FRRVMSRGAEPDGLLYSLAV 287