BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00039967
         (500 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   191   1e-47
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   187   4e-46
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   183   2e-45
emb|CBI21038.3| unnamed protein product [Vitis vinifera]              183   2e-45
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   184   7e-45
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   184   7e-45
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   179   7e-45
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   179   7e-45
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       183   7e-45
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...   181   1e-44
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   178   9e-44
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...   178   1e-43
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops...   176   4e-43
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   177   5e-43
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha...   176   5e-43
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     176   6e-43
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     176   8e-43
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   175   1e-42
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   175   1e-42
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    175   1e-42

>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  191 bits (485), Expect(2) = 1e-47
 Identities = 93/152 (61%), Positives = 114/152 (75%), Gaps = 3/152 (1%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL  +C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKEA+Q+YKS KILG+ Y
Sbjct: 938  GALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
               KDA   DI  SSE+   P D+ +DTDLE+P S D I DAWN KC+Y+GQ+N LL QY
Sbjct: 998  RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
             V+ EEE+VTGH+WS+P YNSRK  ++KE++K
Sbjct: 1058 KVNREEELVTGHIWSMPKYNSRKQGELKERLK 1089



 Score = 24.6 bits (52), Expect(2) = 1e-47
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 498 ICNAHVVLADQSKKRSL 448
           ICNAHVV AD S+  +L
Sbjct: 924 ICNAHVVHADHSEYGAL 940


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  187 bits (475), Expect(2) = 4e-46
 Identities = 87/152 (57%), Positives = 118/152 (77%), Gaps = 3/152 (1%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GA   +C    +LAATAV+FPKTG  V MP +LKPK+Y DFMGKE +Q+YKSEKILG+ Y
Sbjct: 941  GATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLY 1000

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              IKDA   D+ +SSE++  P D+P+D+DLE+ G+SD I+DAW+ KC+Y+GQ+N LL QY
Sbjct: 1001 RQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQY 1060

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
             V  EEE+VTGH+WS+P Y+SRK  ++K+++K
Sbjct: 1061 KVKREEEVVTGHIWSMPKYSSRKQGELKDRLK 1092



 Score = 23.5 bits (49), Expect(2) = 4e-46
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD S+
Sbjct: 927 ICNAHVVHADLSE 939


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  183 bits (465), Expect(2) = 2e-45
 Identities = 93/158 (58%), Positives = 112/158 (70%), Gaps = 3/158 (1%)
 Frame = -1

Query: 467  RAKKGALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R++ GAL   C  LA   ATAV+FPKTG  V +P +LKPK+Y DFMGKE FQTY+S KIL
Sbjct: 933  RSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKIL 992

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            GK Y  IKDA   D+  SSE     + VPFD DL IPGS+D INDAW  KC+Y+GQ+N L
Sbjct: 993  GKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGL 1052

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMKDA 3
            L QY V  EEE+VTGHVWS+P Y SRK  ++ E++K A
Sbjct: 1053 LGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHA 1090



 Score = 25.0 bits (53), Expect(2) = 2e-45
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 498 ICNAHVVLADQSKKRSL 448
           ICNAHVV AD+S+  +L
Sbjct: 923 ICNAHVVHADRSEYGAL 939


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  183 bits (465), Expect(2) = 2e-45
 Identities = 93/158 (58%), Positives = 112/158 (70%), Gaps = 3/158 (1%)
 Frame = -1

Query: 467  RAKKGALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R++ GAL   C  LA   ATAV+FPKTG  V +P +LKPK+Y DFMGKE FQTY+S KIL
Sbjct: 771  RSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKIL 830

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            GK Y  IKDA   D+  SSE     + VPFD DL IPGS+D INDAW  KC+Y+GQ+N L
Sbjct: 831  GKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGL 890

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMKDA 3
            L QY V  EEE+VTGHVWS+P Y SRK  ++ E++K A
Sbjct: 891  LGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHA 928



 Score = 25.0 bits (53), Expect(2) = 2e-45
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 498 ICNAHVVLADQSKKRSL 448
           ICNAHVV AD+S+  +L
Sbjct: 761 ICNAHVVHADRSEYGAL 777


>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
            arietinum]
          Length = 1247

 Score =  184 bits (466), Expect(2) = 7e-45
 Identities = 90/152 (59%), Positives = 115/152 (75%), Gaps = 3/152 (1%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKE  Q+YKS+KILG+ Y
Sbjct: 982  GALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKKILGRLY 1041

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              IKDA   DI +  +++CA  D+ +DTDLE+PGS+D I+DAW  KC+Y+GQ++ LL QY
Sbjct: 1042 RQIKDAYDKDIDAP-DLNCASSDIHYDTDLEVPGSADFISDAWYQKCSYDGQLSGLLGQY 1100

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
             V TEEE+VTG +WS+P YNSRK  ++KE++K
Sbjct: 1101 KVKTEEEVVTGQIWSMPKYNSRKQGELKERLK 1132



 Score = 22.7 bits (47), Expect(2) = 7e-45
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 498  ICNAHVVLADQS 463
            ICNAHVV AD S
Sbjct: 968  ICNAHVVHADCS 979


>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
            arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
            arietinum]
          Length = 1201

 Score =  184 bits (466), Expect(2) = 7e-45
 Identities = 90/152 (59%), Positives = 115/152 (75%), Gaps = 3/152 (1%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKE  Q+YKS+KILG+ Y
Sbjct: 936  GALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKKILGRLY 995

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              IKDA   DI +  +++CA  D+ +DTDLE+PGS+D I+DAW  KC+Y+GQ++ LL QY
Sbjct: 996  RQIKDAYDKDIDAP-DLNCASSDIHYDTDLEVPGSADFISDAWYQKCSYDGQLSGLLGQY 1054

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
             V TEEE+VTG +WS+P YNSRK  ++KE++K
Sbjct: 1055 KVKTEEEVVTGQIWSMPKYNSRKQGELKERLK 1086



 Score = 22.7 bits (47), Expect(2) = 7e-45
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 498 ICNAHVVLADQS 463
           ICNAHVV AD S
Sbjct: 922 ICNAHVVHADCS 933


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  179 bits (455), Expect(2) = 7e-45
 Identities = 91/157 (57%), Positives = 116/157 (73%), Gaps = 4/157 (2%)
 Frame = -1

Query: 467  RAKKGALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R+K GAL  +C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKEA Q+YKS KIL
Sbjct: 933  RSKHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKIL 992

Query: 296  GKHYLMIKDA-SAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINA 120
            GK Y  I+DA    D+ +S E++  P DV +D DLE+ G+ D I +AW+ KC+Y+GQ++ 
Sbjct: 993  GKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSG 1052

Query: 119  LLRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            LL QY V+ EEEIVTGH+WS+P Y SRK  ++KEK+K
Sbjct: 1053 LLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLK 1089



 Score = 26.9 bits (58), Expect(2) = 7e-45
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 498 ICNAHVVLADQSKKRSL 448
           ICNAHVV AD+SK  +L
Sbjct: 923 ICNAHVVHADRSKHGAL 939


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  179 bits (455), Expect(2) = 7e-45
 Identities = 91/157 (57%), Positives = 116/157 (73%), Gaps = 4/157 (2%)
 Frame = -1

Query: 467  RAKKGALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R+K GAL  +C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKEA Q+YKS KIL
Sbjct: 933  RSKHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKIL 992

Query: 296  GKHYLMIKDA-SAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINA 120
            GK Y  I+DA    D+ +S E++  P DV +D DLE+ G+ D I +AW+ KC+Y+GQ++ 
Sbjct: 993  GKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSG 1052

Query: 119  LLRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            LL QY V+ EEEIVTGH+WS+P Y SRK  ++KEK+K
Sbjct: 1053 LLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLK 1089



 Score = 26.9 bits (58), Expect(2) = 7e-45
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 498 ICNAHVVLADQSKKRSL 448
           ICNAHVV AD+SK  +L
Sbjct: 923 ICNAHVVHADRSKHGAL 939


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  183 bits (465), Expect(2) = 7e-45
 Identities = 84/152 (55%), Positives = 113/152 (74%), Gaps = 3/152 (1%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C    +LAA AV+FPKTGI V MP HLKPK+Y DFMGKE +Q+YKS KI+G+ Y
Sbjct: 934  GALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLY 993

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              IKD  + D+  SSE++    ++PFDTDLE+PG++D ++DAW  KC+Y+GQ+  L+ QY
Sbjct: 994  RQIKDEYSDDVSPSSELNIVSSNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQY 1053

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
             V  EEE+VTG +WS+P +NSRK  D+KE++K
Sbjct: 1054 KVKREEEVVTGQIWSMPKHNSRKEGDLKERLK 1085



 Score = 23.1 bits (48), Expect(2) = 7e-45
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 498 ICNAHVVLADQS 463
           ICNAHVV AD S
Sbjct: 920 ICNAHVVHADLS 931


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
            gi|482559225|gb|EOA23416.1| hypothetical protein
            CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score =  181 bits (459), Expect(2) = 1e-44
 Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 3/156 (1%)
 Frame = -1

Query: 467  RAKKGALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R++ GA+  DC    +LAATAV+FPKTG  V +P HLKPKLY DFMGKE +QTYKS KIL
Sbjct: 933  RSEYGAMDEDCLLLAELAATAVDFPKTGKIVSIPFHLKPKLYPDFMGKEDYQTYKSNKIL 992

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            G+ Y  +K+    D ++SSE +    D+P+DTDLEIPG +DLI +AW  KC+Y+GQ+  L
Sbjct: 993  GRLYRRVKEVYDEDAEASSEENPDLSDIPYDTDLEIPGFADLIPEAWRHKCSYDGQLIGL 1052

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            L QY V  EEEIVTGH+WS+P Y S+K  D+KE++K
Sbjct: 1053 LGQYKVQKEEEIVTGHIWSMPKYTSKKQGDLKERLK 1088



 Score = 24.6 bits (52), Expect(2) = 1e-44
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD+S+
Sbjct: 923 ICNAHVVHADRSE 935


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  178 bits (451), Expect(2) = 9e-44
 Identities = 88/156 (56%), Positives = 112/156 (71%), Gaps = 3/156 (1%)
 Frame = -1

Query: 467  RAKKGALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R++ GA+  +C    +LAATAV+ PKTG  V MP HLKPKLY DFMGKE +QTYKS KIL
Sbjct: 933  RSEYGAMDEECVLLAELAATAVDSPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSSKIL 992

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            G+ Y  +K+    D ++SSE S  P D+P+D DLEIPG  DLI +AW  KC+Y+ Q+  L
Sbjct: 993  GRLYRRVKEVYDEDAEASSEESSDPSDIPYDIDLEIPGFEDLIPEAWGHKCSYDRQLIGL 1052

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            L QY V  EEEIVTGH+WS+P Y S+K  D+KE++K
Sbjct: 1053 LGQYKVQKEEEIVTGHIWSMPKYTSKKQCDLKERLK 1088



 Score = 24.6 bits (52), Expect(2) = 9e-44
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD+S+
Sbjct: 923 ICNAHVVHADRSE 935


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1188

 Score =  178 bits (452), Expect(2) = 1e-43
 Identities = 88/152 (57%), Positives = 113/152 (74%), Gaps = 3/152 (1%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL  +C    +LAATAV+FPKTG  V MP +LKPKLY DFMGKE  Q+YKS+KILG+ Y
Sbjct: 923  GALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLY 982

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              IKDA   DI +  E +C   D+ +DTDLE+PGSS+ I DAW  +C+Y+GQ++ LL QY
Sbjct: 983  RRIKDAYDKDIDAP-EFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQY 1041

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
             V TEEE+VTG +WS+P YNSRK  ++KE++K
Sbjct: 1042 KVKTEEEVVTGQIWSMPKYNSRKQGELKERLK 1073



 Score = 23.9 bits (50), Expect(2) = 1e-43
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 498 ICNAHVVLADQS 463
           ICNAHVV AD S
Sbjct: 909 ICNAHVVHADSS 920


>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
          Length = 1196

 Score =  176 bits (446), Expect(2) = 4e-43
 Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 3/156 (1%)
 Frame = -1

Query: 467  RAKKGALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R++ GA+  +C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKE +QTYKS KIL
Sbjct: 933  RSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKIL 992

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            G+ Y  +K+    D ++SSE S  P  +P+D  LEIPG  DLI +AW  KC+Y+GQ+  L
Sbjct: 993  GRLYRPVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCSYDGQLIGL 1052

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            L QY V  EEEIVTGH+WS+P Y S+K  ++KE++K
Sbjct: 1053 LGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLK 1088



 Score = 24.6 bits (52), Expect(2) = 4e-43
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD+S+
Sbjct: 923 ICNAHVVHADRSE 935


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  177 bits (448), Expect(2) = 5e-43
 Identities = 85/154 (55%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
 Frame = -1

Query: 455  GALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C KLA   A AV+FPKTG  V MP  LKPK+Y DFMGKE FQ+YKS+KILGK Y
Sbjct: 938  GALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLY 997

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              +KD    + + S+ +   P+D+P+DT LEI GS+  I+DAWN KC+Y+GQ+N LL QY
Sbjct: 998  RQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQY 1057

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMKDA 3
             V+ EEE+VTGH+WS+P Y+++K  ++KE++K A
Sbjct: 1058 KVNREEEVVTGHIWSMPKYSAKKQGELKERLKHA 1091



 Score = 23.5 bits (49), Expect(2) = 5e-43
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD S+
Sbjct: 924 ICNAHVVHADLSE 936


>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
            gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
            Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
            AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
            Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
            Full=RNA-directed RNA polymerase 6
            gi|12324444|gb|AAG52184.1|AC012329_11 putative
            RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
            thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
            polymerase-like protein [Arabidopsis thaliana]
            gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
            gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
            6 [Arabidopsis thaliana]
          Length = 1196

 Score =  176 bits (445), Expect(2) = 5e-43
 Identities = 87/156 (55%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
 Frame = -1

Query: 467  RAKKGALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R++ GA+  +C    +LAATAV+FPKTG  V MP HLKPKLY DFMGKE +QTYKS KIL
Sbjct: 933  RSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKIL 992

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            G+ Y  +K+    D ++SSE S  P  +P+D  LEIPG  DLI +AW  KC Y+GQ+  L
Sbjct: 993  GRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGL 1052

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            L QY V  EEEIVTGH+WS+P Y S+K  ++KE++K
Sbjct: 1053 LGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLK 1088



 Score = 24.6 bits (52), Expect(2) = 5e-43
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD+S+
Sbjct: 923 ICNAHVVHADRSE 935


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  176 bits (447), Expect(2) = 6e-43
 Identities = 85/154 (55%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
 Frame = -1

Query: 455  GALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C KLA   A AV+FPKTG  V MP  LKPK+Y DFMGKE FQ+YKS+KILGK Y
Sbjct: 938  GALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLY 997

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              +KD    + + S+ +   P+D+P+DT LEI GS+  I+DAWN KC+Y+GQ+N LL QY
Sbjct: 998  RQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQY 1057

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMKDA 3
             V+ EEE+VTG++WS+P YN++K  ++KE++K A
Sbjct: 1058 KVNREEEVVTGYIWSMPKYNAKKQGELKERLKHA 1091



 Score = 23.5 bits (49), Expect(2) = 6e-43
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD S+
Sbjct: 924 ICNAHVVHADLSE 936


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  176 bits (446), Expect(2) = 8e-43
 Identities = 84/154 (54%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
 Frame = -1

Query: 455  GALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C KLA   A AV+FPKTG  V MP  LKPK+Y DFMGKE FQ+YKS+KILGK Y
Sbjct: 938  GALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLY 997

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              +KD    + + S+ +   P D+P+D+ LEIPGS+  I+DAWN KC+Y+GQ++ LL QY
Sbjct: 998  RQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQY 1057

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMKDA 3
             V+ EEE+VTGH+WS+P Y+++K  ++KE++K A
Sbjct: 1058 KVNREEEVVTGHIWSMPKYSAKKQGELKERLKHA 1091



 Score = 23.5 bits (49), Expect(2) = 8e-43
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD S+
Sbjct: 924 ICNAHVVHADLSE 936


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  175 bits (443), Expect(2) = 1e-42
 Identities = 87/153 (56%), Positives = 113/153 (73%), Gaps = 4/153 (2%)
 Frame = -1

Query: 455  GALHGDC---KKLAATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C    +LAATAV+FPKTG  V MP  LKPK+Y DFMGKE  Q+YKS+KILG+ Y
Sbjct: 938  GALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLY 997

Query: 284  LMIKDA-SAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQ 108
              IKDA    D+ +SSE++    D+P+D DLE+ G++D I+DAW+ KC+Y+GQ+N LL Q
Sbjct: 998  RQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQ 1057

Query: 107  YMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMK 9
            Y V  EEE+VTGHVWS+P  +SRK  D+KE++K
Sbjct: 1058 YKVKREEEVVTGHVWSMPKGSSRKQGDLKERLK 1090



 Score = 24.3 bits (51), Expect(2) = 1e-42
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 498 ICNAHVVLADQSKKRSL 448
           ICNAHVV AD S+  +L
Sbjct: 924 ICNAHVVRADLSEYGAL 940


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  175 bits (443), Expect(2) = 1e-42
 Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 3/155 (1%)
 Frame = -1

Query: 467  RAKKGALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKIL 297
            R+  GAL  +C KLA   A AV+FPKTG  V +PQHLKP+LY DF+GKE  Q+YKS KIL
Sbjct: 932  RSDYGALDVNCLKLAELAALAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKIL 991

Query: 296  GKHYLMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINAL 117
            G+ Y  ++DA   D  +SSE+   P D+P+D DLE+PG++D + DAW  KC+Y+GQ+  L
Sbjct: 992  GRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGL 1051

Query: 116  LRQYMVSTEEEIVTGHVWSLPTYNSRKH*DIKEKM 12
            + QY V  EEEIVTGHVWS+P  NS+K  ++KE++
Sbjct: 1052 MGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERL 1086



 Score = 24.3 bits (51), Expect(2) = 1e-42
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 498 ICNAHVVLADQS 463
           ICNAHVV AD+S
Sbjct: 922 ICNAHVVHADRS 933


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  175 bits (444), Expect(2) = 1e-42
 Identities = 84/154 (54%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
 Frame = -1

Query: 455  GALHGDCKKLA---ATAVNFPKTGIFVPMPQHLKPKLYLDFMGKEAFQTYKSEKILGKHY 285
            GAL   C KLA   A AV+FPKTG  V MP  LKPK+Y DFMGKE FQ+YKS+KILGK Y
Sbjct: 938  GALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLY 997

Query: 284  LMIKDASAGDIQSSSEISCAPEDVPFDTDLEIPGSSDLINDAWNLKCAYEGQINALLRQY 105
              +KD    + + S+ +   P+D+P+DT L IPGS+  I+DAWN KC+Y+GQ++ LL QY
Sbjct: 998  RQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQY 1057

Query: 104  MVSTEEEIVTGHVWSLPTYNSRKH*DIKEKMKDA 3
             V+ EEE+VTGH+WS+P Y+++K  ++KE++K A
Sbjct: 1058 KVNREEEVVTGHIWSMPKYSAKKQGELKERLKHA 1091



 Score = 23.5 bits (49), Expect(2) = 1e-42
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 498 ICNAHVVLADQSK 460
           ICNAHVV AD S+
Sbjct: 924 ICNAHVVHADLSE 936