BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00038201
         (621 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...   153   4e-35
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          153   4e-35
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   145   7e-33
ref|XP_003606104.1| Aspartyl-tRNA synthetase [Medicago truncatul...   145   9e-33
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   144   3e-32
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   144   3e-32
gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsi...   142   1e-31
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   140   2e-31
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   139   5e-31
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]   139   5e-31
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        139   7e-31
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         139   9e-31
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           139   9e-31
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   137   2e-30
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]   137   3e-30
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              136   4e-30
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              136   4e-30
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              136   4e-30
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   136   4e-30
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   136   4e-30

>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score =  153 bits (386), Expect = 4e-35
 Identities = 74/136 (54%), Positives = 98/136 (72%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3   RRSTIGYVFSIHGALVSWRSML*A------TEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
           RRS  GYVF++ G  VSW++ L +      TEAE+MA+ E  KEALW+  ++ DLG +QD
Sbjct: 448 RRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQD 507

Query: 165 CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            + LWCDS SAI L+KN  HH RTKHIDVRY+F+RDV+E  DV ++K+HT+ NPAD LTK
Sbjct: 508 KVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLKIHTSRNPADALTK 567

Query: 345 VVTSSKFQQCLDLLHI 392
            +  +KFQ  L+LL +
Sbjct: 568 SIPVNKFQSALELLKL 583


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  153 bits (386), Expect = 4e-35
 Identities = 78/136 (57%), Positives = 101/136 (74%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3   RRSTIGYVFSIHGALVSWRSML*AT------EAEYMAMVEGVKEALWLWDILDDLGTKQD 164
           +RST GYVF++ G  VSWRS+L +T      EAEY+A  E VKEA+WL  +L DLG  Q+
Sbjct: 158 QRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQE 217

Query: 165 CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            + ++CD+ SAI LAKNQ +HARTKHIDV+YH+VR++IE  DV L K+ T +NP+DMLTK
Sbjct: 218 NIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTK 277

Query: 345 VVTSSKFQQCLDLLHI 392
           VV+  KFQ CL L+ I
Sbjct: 278 VVSEVKFQHCLKLIQI 293


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  145 bits (367), Expect = 7e-33
 Identities = 77/139 (55%), Positives = 95/139 (68%), Gaps = 6/139 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*------ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF++ G++VSW++ L        TEAEYMA+ E  KE +WL  ++ DLG   D
Sbjct: 1172 RRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHD 1231

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
               ++CDS SAI LAK+QVHH RTKHIDVRYHF+R    E  + + KV T +NPADM TK
Sbjct: 1232 QATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTK 1288

Query: 345  VVTSSKFQQCLDLLHIGSC 401
             V  SKFQ CLDLL+I SC
Sbjct: 1289 PVPQSKFQHCLDLLNIRSC 1307


>ref|XP_003606104.1| Aspartyl-tRNA synthetase [Medicago truncatula]
           gi|355507159|gb|AES88301.1| Aspartyl-tRNA synthetase
           [Medicago truncatula]
          Length = 803

 Score =  145 bits (366), Expect = 9e-33
 Identities = 68/134 (50%), Positives = 99/134 (73%), Gaps = 6/134 (4%)
 Frame = +3

Query: 3   RRSTIGYVFSIHGALVSWRS------ML*ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
           R+S  G+VF+++G  +SW++       L  T+AEY+A+VEGVKEA+WL  ++ +LG  Q+
Sbjct: 21  RKSLSGFVFTLYGTTISWKANQQSVVALSTTQAEYIALVEGVKEAIWLKGMIGELGITQE 80

Query: 165 CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
           C+ + CDS SAIHLA +QV+H RTKHID+R HFVRD+IE  ++ + KV + ENPAD+ TK
Sbjct: 81  CVKIHCDSQSAIHLANHQVYHERTKHIDIRLHFVRDMIESKEIVVEKVASEENPADVFTK 140

Query: 345 VVTSSKFQQCLDLL 386
            +  S+F+ CLDL+
Sbjct: 141 SLPRSRFKHCLDLI 154


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  144 bits (362), Expect = 3e-32
 Identities = 68/136 (50%), Positives = 96/136 (70%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*------ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF+I G  VSW++ L        TEAEY+A+ E  KEA+W+  +L D+G +QD
Sbjct: 1217 RRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQD 1276

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + +WCDS SAI L+KN V+H RTKHIDVR++++RDV+E  DV ++K+HT+ NP D LTK
Sbjct: 1277 KVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTK 1336

Query: 345  VVTSSKFQQCLDLLHI 392
             +  +KF+  L +L +
Sbjct: 1337 CIPVNKFKSALGVLKL 1352


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  144 bits (362), Expect = 3e-32
 Identities = 71/139 (51%), Positives = 98/139 (70%), Gaps = 6/139 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*A------TEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            R+S  GYVF+  G  VSW++ L +      TEAEYMAM E VKEA+WL  I ++L   + 
Sbjct: 1070 RKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRG 1129

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CD+ SAIHLAKNQ  H R+KHIDVR HFVRD+I   ++ + KVHT +NP+DMLTK
Sbjct: 1130 KVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTK 1189

Query: 345  VVTSSKFQQCLDLLHIGSC 401
             +  +KF+ CL+L+++G C
Sbjct: 1190 SLNVTKFKHCLNLINMGDC 1208


>gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsis thaliana]
           gi|7267201|emb|CAB77912.1| putative transposon protein
           [Arabidopsis thaliana]
          Length = 570

 Score =  142 bits (357), Expect = 1e-31
 Identities = 70/127 (55%), Positives = 90/127 (70%), Gaps = 6/127 (4%)
 Frame = +3

Query: 3   RRSTIGYVFSIHGALVSWRSML*------ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
           RRST GYVF++ G  VSW+S L        TEAEY+A+ E VKEALW+  +L D+G KQD
Sbjct: 444 RRSTTGYVFTVGGNTVSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQGLLKDMGVKQD 503

Query: 165 CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            + +W DS   I L+K  + H RTKHI V+YHF+RDVIE  DV ++K+HT++NPADMLTK
Sbjct: 504 KVLVWSDSQCVISLSKKNMFHERTKHIAVKYHFIRDVIENGDVEVLKIHTSQNPADMLTK 563

Query: 345 VVTSSKF 365
           V+   KF
Sbjct: 564 VIPVQKF 570


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  140 bits (354), Expect = 2e-31
 Identities = 69/138 (50%), Positives = 96/138 (69%), Gaps = 6/138 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*------ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  G VF++ G  +SW+S L        TE+EYM++ E VKEA+WL  +L D G +Q 
Sbjct: 1218 RRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQK 1277

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CDS SAI L+KN VHH RTKHIDV+YHF+R++I +  V ++K+ T +NPAD+ TK
Sbjct: 1278 SVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLKISTEKNPADIFTK 1337

Query: 345  VVTSSKFQQCLDLLHIGS 398
            V+  SKFQ  L+LL + S
Sbjct: 1338 VLAVSKFQAALNLLRVKS 1355


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  139 bits (351), Expect = 5e-31
 Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 6/138 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRS------ML*ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  G+VF+  G  +SW+S       L  TEAEYMA+ E VKEA+WL  +  ++G +QD
Sbjct: 1204 RRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQD 1263

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + + CDS SAI L+KN VHH RTKHIDVRYHF+R+ I + ++ ++K+ T  NPAD+ TK
Sbjct: 1264 AVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTK 1323

Query: 345  VVTSSKFQQCLDLLHIGS 398
             V  SK Q+ L LL + S
Sbjct: 1324 TVPVSKLQEALKLLRVSS 1341


>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
          Length = 735

 Score =  139 bits (351), Expect = 5e-31
 Identities = 70/137 (51%), Positives = 98/137 (71%), Gaps = 6/137 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRS------ML*ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            R+S IGYVF++ G  VSW++       L ATEAEYMAM E VKE +WL  I+++L   + 
Sbjct: 597  RKSLIGYVFTVFGGAVSWKANLQSVVALSATEAEYMAMTEVVKEVIWLKGIIEELAMYKG 656

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CD+ SAIHLAKNQ  H R+KHIDVR HFVRD+I   ++ + KV T +NP+DMLTK
Sbjct: 657  KVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAVGEIGVGKVPTKDNPSDMLTK 716

Query: 345  VVTSSKFQQCLDLLHIG 395
             +  +KF+ CL+L+++G
Sbjct: 717  SLNVTKFKHCLNLINMG 733


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  139 bits (350), Expect = 7e-31
 Identities = 71/136 (52%), Positives = 94/136 (69%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*AT------EAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF+I G  VSW++ L AT      EAEYMA+ E  KEA+WL  +  +L     
Sbjct: 1044 RRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTS 1103

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            C+N++CDS SAI L K+Q+ H RTKHIDVRYHF+R VI E DV + K+ T++NPADM+TK
Sbjct: 1104 CINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTK 1163

Query: 345  VVTSSKFQQCLDLLHI 392
             V ++KF+ C  L+ +
Sbjct: 1164 PVPATKFELCSSLVGV 1179


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  139 bits (349), Expect = 9e-31
 Identities = 70/136 (51%), Positives = 94/136 (69%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*AT------EAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF+I G  VSW++ L AT      EAEYMA+ E  KEALWL  +  +L     
Sbjct: 807  RRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEALWLRGLYTELCGVTS 866

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            C+N++CDS SAI+L ++Q+ H RTKHIDVRYHF+R VI E DV + K+ T++NPADM+ K
Sbjct: 867  CINIFCDSQSAIYLTEDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMIK 926

Query: 345  VVTSSKFQQCLDLLHI 392
             V ++KF+ C  L+ +
Sbjct: 927  AVPATKFELCSSLVGV 942


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  139 bits (349), Expect = 9e-31
 Identities = 70/136 (51%), Positives = 94/136 (69%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*AT------EAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF+I G  VSW++ L AT      EAEYMA+ E  KEALWL  +  +L     
Sbjct: 807  RRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEALWLRGLYTELCGVTS 866

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            C+N++CDS SAI+L ++Q+ H RTKHIDVRYHF+R VI E DV + K+ T++NPADM+ K
Sbjct: 867  CINIFCDSQSAIYLTEDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMIK 926

Query: 345  VVTSSKFQQCLDLLHI 392
             V ++KF+ C  L+ +
Sbjct: 927  AVPATKFELCSSLVGV 942


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score =  137 bits (346), Expect = 2e-30
 Identities = 70/136 (51%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*AT------EAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF+I G  VSW++ L AT      EAEYMA+ E  KE +WL  +  +L     
Sbjct: 1001 RRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTS 1060

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            C+N++CDS SAI L K+Q+ H RTKHIDVRYHF+R VI E DV + K+ T++NPADM+TK
Sbjct: 1061 CINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTK 1120

Query: 345  VVTSSKFQQCLDLLHI 392
             V ++KF+ C  L+ +
Sbjct: 1121 PVPATKFELCSSLVGV 1136


>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
          Length = 406

 Score =  137 bits (345), Expect = 3e-30
 Identities = 69/133 (51%), Positives = 96/133 (72%), Gaps = 6/133 (4%)
 Frame = +3

Query: 3   RRSTIGYVFSIHGALVSWRSM------L*ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
           RRSTIGYVF++ G  + W+SM      L  T++EYMA+ E  KE+LWL  ++ +LG +Q 
Sbjct: 273 RRSTIGYVFTLGGGPICWKSMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQG 332

Query: 165 CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
            + L+ D+ SAI+L KNQV+HARTKHIDVR+H + +++   ++ L KVHT+EN ADMLTK
Sbjct: 333 GVQLYFDNQSAIYLEKNQVYHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTK 392

Query: 345 VVTSSKFQQCLDL 383
            VT+ KF+ CL L
Sbjct: 393 PVTTEKFKHCLKL 405


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  136 bits (343), Expect = 4e-30
 Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 6/130 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*A------TEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            R+ST GYVF++ G  VSW S L        TEAEYMA  +  KEA+W+  ++++LG KQ+
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CDS SA+H+A+N   H+RTKHI V+YHFVR+V+EE  V + K+HTN+N AD++TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTK 1286

Query: 345  VVTSSKFQQC 374
             + + KF  C
Sbjct: 1287 PINTDKFVWC 1296


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  136 bits (343), Expect = 4e-30
 Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 6/130 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*A------TEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            R+ST GYVF++ G  VSW S L        TEAEYMA  +  KEA+W+  ++++LG KQ+
Sbjct: 1167 RKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CDS SA+H+A+N   H+RTKHI V+YHFVR+V+EE  V + K+HTN+N AD++TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTK 1286

Query: 345  VVTSSKFQQC 374
             + + KF  C
Sbjct: 1287 PINADKFVWC 1296


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  136 bits (343), Expect = 4e-30
 Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 6/130 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*A------TEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            R+ST GYVF++ G  VSW S L        TEAEYMA  +  KEA+W+  ++++LG KQ+
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CDS SA+H+A+N   H+RTKHI V+YHFVR+V+EE  V + K+HTN+N AD++TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTK 1286

Query: 345  VVTSSKFQQC 374
             + + KF  C
Sbjct: 1287 PINADKFVWC 1296


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score =  136 bits (343), Expect = 4e-30
 Identities = 64/136 (47%), Positives = 96/136 (70%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRSML*------ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  GYVF++ G  VSW+S L       +T+AE++A+ E VKEA+W+  +L+D+G +  
Sbjct: 1171 RRSISGYVFTVGGNTVSWKSSLQHVVALSSTQAEFIALTEAVKEAIWIRGLLEDMGLQPK 1230

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
               +WCDS SAI L+KN   H RTKH++V+++F+RD+IE  +V + K+HT+ NPADMLTK
Sbjct: 1231 PATVWCDSQSAICLSKNNAFHDRTKHVEVKFYFIRDIIEAGEVKVRKIHTSVNPADMLTK 1290

Query: 345  VVTSSKFQQCLDLLHI 392
             +   KF++ LD+L +
Sbjct: 1291 CIPVKKFEEALDVLKL 1306


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  136 bits (343), Expect = 4e-30
 Identities = 66/136 (48%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3    RRSTIGYVFSIHGALVSWRS------ML*ATEAEYMAMVEGVKEALWLWDILDDLGTKQD 164
            RRS  G VF++ G+ +SW+S       L  TEAEYM++ E VKEA+W+  +L + G +Q 
Sbjct: 1195 RRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQK 1254

Query: 165  CMNLWCDS*SAIHLAKNQVHHARTKHIDVRYHFVRDVIEECDVSLIKVHTNENPADMLTK 344
             + ++CDS SAI L+KN VHH RTKHIDVRY ++RD+I   D  ++K+ T +NPAD+ TK
Sbjct: 1255 SVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTK 1314

Query: 345  VVTSSKFQQCLDLLHI 392
            +V  +KFQ  L LL +
Sbjct: 1315 IVPVNKFQAALTLLQV 1330