BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00035022
         (843 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   382   e-104
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              373   e-101
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob...   357   2e-96
gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus...   338   2e-90
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   333   4e-89
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   333   4e-89
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   333   4e-89
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   333   4e-89
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   333   5e-89
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   328   2e-87
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           326   8e-87
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   326   8e-87
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           325   1e-86
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   321   2e-85
gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial...   319   9e-85
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   317   5e-84
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   315   1e-83
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   313   7e-83
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   309   1e-81
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   308   1e-81

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  382 bits (981), Expect = e-104
 Identities = 185/248 (74%), Positives = 215/248 (86%)
 Frame = +1

Query: 67  KGILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLP 246
           +G+ P +RH+SR++PP+PA AAPVIRVSNN+AQL  PKE PKPRQLLSLP FPA   PLP
Sbjct: 10  QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAH--PLP 67

Query: 247 GKNSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIP 426
           GK+ V+  G P  +TAI+W+KYYFD+IP S++QSHFNKGLV ME S+  D+S  K+ QI 
Sbjct: 68  GKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIK 127

Query: 427 SLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSA 606
            LRKIKPNEVME G +IYVPVSVAE++ISKRFDTIPSGTL+PNADEI+YLQRLV YKD A
Sbjct: 128 PLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPA 187

Query: 607 IMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKES 786
           I+VLNKPPK+P+KGNLPVHNSMDALAAAAL++ YEEGPKLVHRLDRESSGLLLMGR KES
Sbjct: 188 ILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKES 247

Query: 787 IAQLHWLF 810
           +A LHWLF
Sbjct: 248 VAHLHWLF 255


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  373 bits (957), Expect = e-101
 Identities = 182/250 (72%), Positives = 215/250 (86%), Gaps = 2/250 (0%)
 Frame = +1

Query: 67  KGILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLP 246
           +G+ P +RH+SR++PP+PA AAPVIRVSNN+AQL  PKE PKPRQLLSLP FPA   PLP
Sbjct: 10  QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAH--PLP 67

Query: 247 GKNSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIP 426
           GK+ V+  G P  +TAI+W+KYYFD+IP S++QSHFNKGLV ME S+  D+S  K+ QI 
Sbjct: 68  GKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIK 127

Query: 427 SLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQR--LVMYKD 600
            LRKIKPNEVME G +IYVPVSVAE++ISKRFDTIPSGTL+PNADEI+YLQR  L+ ++D
Sbjct: 128 PLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQD 187

Query: 601 SAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRK 780
            AI+VLNKPPK+P+KGNLPVHNSMDALAAAAL++ YEEGPKLVHRLDRESSGLLLMGR K
Sbjct: 188 PAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTK 247

Query: 781 ESIAQLHWLF 810
           ES+A LHWLF
Sbjct: 248 ESVAHLHWLF 257


>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
           gi|508779021|gb|EOY26277.1| Pseudouridine synthase
           family protein [Theobroma cacao]
          Length = 471

 Score =  357 bits (917), Expect = 2e-96
 Identities = 181/255 (70%), Positives = 207/255 (81%)
 Frame = +1

Query: 46  MSKTLLRKGILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFP 225
           M K+ L    L  +RH+SR++PP PA A PV+RVSN++A L  PK+ PKPRQLLSLP FP
Sbjct: 1   MQKSRLGWQFLSLVRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFP 60

Query: 226 AQHQPLPGKNSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSK 405
               PLPGKN    PG  AR+TAI+WLKYYFD+IP S IQSHFNKGLVQME S+  DT  
Sbjct: 61  GY--PLPGKN----PGGTARVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCI 114

Query: 406 GKQAQIPSLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRL 585
            +   +  LRKIK NEVMEVG +++VPVS+AE++ISKRFD IPSGTLYPN DEIDYLQRL
Sbjct: 115 ERDGLMKPLRKIKHNEVMEVGTRVWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRL 174

Query: 586 VMYKDSAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLL 765
           V YKD AI+VLNKPPKLPVKG+LPVHNSMDALAAAALSY ++EGPKLVHRLDRESSGLLL
Sbjct: 175 VKYKDYAILVLNKPPKLPVKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLL 234

Query: 766 MGRRKESIAQLHWLF 810
           MGR KES+A LHWLF
Sbjct: 235 MGRTKESVAHLHWLF 249


>gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus guttatus]
          Length = 460

 Score =  338 bits (867), Expect = 2e-90
 Identities = 171/238 (71%), Positives = 194/238 (81%)
 Frame = +1

Query: 97  SRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVSPPGQ 276
           S++ PP PA A  V+RVSNNIA L  PKE PKPRQLLSLP FP    PLPG+NS S    
Sbjct: 5   SKIRPPPPASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPPFPGN--PLPGRNSTSVE-- 60

Query: 277 PARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIKPNEV 456
              +TAI+WLKYYFDD+   +IQ HFNKGLV+MEC + S  S+  + Q  S RKIKP+E+
Sbjct: 61  --HVTAISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRGQTMSTRKIKPSEI 118

Query: 457 MEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNKPPKL 636
           +E G ++YVPVSVAE+K+SKRFD IPSGTL+PNADEI YLQRLV YKDSAI+VLNKPPKL
Sbjct: 119 VEEGDRVYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYKDSAILVLNKPPKL 178

Query: 637 PVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHWLF 810
           PVKGNLPVHNSMDALAAAALSY Y+EGPKLVHRLDRESSGLLLMGR KESI+ LHWLF
Sbjct: 179 PVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLF 236


>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X2 [Cicer arietinum]
          Length = 360

 Score =  333 bits (855), Expect = 4e-89
 Identities = 164/242 (67%), Positives = 196/242 (80%)
 Frame = +1

Query: 85  IRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVS 264
           +RH+SR+ PPKP     VIRVSNNIA+L  PKE PKPRQLLSLP FP    PLPGKNS S
Sbjct: 18  VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCH--PLPGKNSTS 75

Query: 265 PPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIK 444
            PG+   +TA+ W+KYYF     S+I+SHF +GLVQME     D+ K K+  +  +RKI+
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIR 135

Query: 445 PNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNK 624
           PNEVM+ GA+++V VS+AE+KISKRFD IPSGTL PNADEI YLQRLV+YKDSAI++LNK
Sbjct: 136 PNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNK 195

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHW 804
           PPKLPVKGNLPVHNSMDALAAAALSY Y++GPKLVHRLDRESSG+LL+GR K+S++ L W
Sbjct: 196 PPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHLQW 255

Query: 805 LF 810
           LF
Sbjct: 256 LF 257


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  333 bits (855), Expect = 4e-89
 Identities = 164/242 (67%), Positives = 196/242 (80%)
 Frame = +1

Query: 85  IRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVS 264
           +RH+SR+ PPKP     VIRVSNNIA+L  PKE PKPRQLLSLP FP    PLPGKNS S
Sbjct: 18  VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCH--PLPGKNSTS 75

Query: 265 PPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIK 444
            PG+   +TA+ W+KYYF     S+I+SHF +GLVQME     D+ K K+  +  +RKI+
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIR 135

Query: 445 PNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNK 624
           PNEVM+ GA+++V VS+AE+KISKRFD IPSGTL PNADEI YLQRLV+YKDSAI++LNK
Sbjct: 136 PNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNK 195

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHW 804
           PPKLPVKGNLPVHNSMDALAAAALSY Y++GPKLVHRLDRESSG+LL+GR K+S++ L W
Sbjct: 196 PPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHLQW 255

Query: 805 LF 810
           LF
Sbjct: 256 LF 257


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  333 bits (855), Expect = 4e-89
 Identities = 168/250 (67%), Positives = 196/250 (78%)
 Frame = +1

Query: 61  LRKGILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQP 240
           +R+ +L   R +SR+SPP PA A P+IRVSNNIAQL  PKE PK RQLLSLP FP    P
Sbjct: 5   MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGY--P 62

Query: 241 LPGKNSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQ 420
           LPGKN V   G+   +TAI W+KYYFD+I  S IQSHF KGLVQ+EC  P      ++  
Sbjct: 63  LPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVEC--PQLGGLDEKGN 120

Query: 421 IPSLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKD 600
           +  +RKI+  E+ME GA+I++PVSVAE K+++RFDTIPSGTLYPNADEI YLQRLV YKD
Sbjct: 121 LKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKD 180

Query: 601 SAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRK 780
           SAI+VLNKPPKLPVKG LPVHNSMDALA AALSY Y++GPKLVHRLDRESSG+LLMGR K
Sbjct: 181 SAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTK 240

Query: 781 ESIAQLHWLF 810
           ES+  L WLF
Sbjct: 241 ESVDHLQWLF 250


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  333 bits (855), Expect = 4e-89
 Identities = 168/250 (67%), Positives = 196/250 (78%)
 Frame = +1

Query: 61  LRKGILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQP 240
           +R+ +L   R +SR+SPP PA A P+IRVSNNIAQL  PKE PK RQLLSLP FP    P
Sbjct: 5   MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGY--P 62

Query: 241 LPGKNSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQ 420
           LPGKN V   G+   +TAI W+KYYFD+I  S IQSHF KGLVQ+EC  P      ++  
Sbjct: 63  LPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVEC--PQLGGLDEKGN 120

Query: 421 IPSLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKD 600
           +  +RKI+  E+ME GA+I++PVSVAE K+++RFDTIPSGTLYPNADEI YLQRLV YKD
Sbjct: 121 LKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKD 180

Query: 601 SAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRK 780
           SAI+VLNKPPKLPVKG LPVHNSMDALA AALSY Y++GPKLVHRLDRESSG+LLMGR K
Sbjct: 181 SAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTK 240

Query: 781 ESIAQLHWLF 810
           ES+  L WLF
Sbjct: 241 ESVDHLQWLF 250


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
           gi|561034434|gb|ESW32964.1| hypothetical protein
           PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  333 bits (854), Expect = 5e-89
 Identities = 161/246 (65%), Positives = 198/246 (80%)
 Frame = +1

Query: 73  ILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGK 252
           +L  +RH+SR+ PP+P    PVIRVSNN+A+L  PKE PKPRQLLSLP FP    PLP K
Sbjct: 15  LLFVVRHYSRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGH--PLPAK 72

Query: 253 NSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSL 432
           +S S PGQ   +TA+ W+KYYF     S+I+SHF +GLVQME    +D+   K+  +  +
Sbjct: 73  SSTSDPGQRDYVTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPM 132

Query: 433 RKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIM 612
           RKI+PNEVM+ GA+++VPVS+AE+++SKR+D IP GTLYPNADEI YLQRLV+YKDSAI+
Sbjct: 133 RKIRPNEVMKHGARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAII 192

Query: 613 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIA 792
           VLNKPPKLPVKGNLPVHNSMDALAAAALSY Y+EGPKLVHRLDRE+SG+LL+GR K+S +
Sbjct: 193 VLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSAS 252

Query: 793 QLHWLF 810
            L WLF
Sbjct: 253 HLQWLF 258


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  328 bits (840), Expect = 2e-87
 Identities = 161/241 (66%), Positives = 195/241 (80%)
 Frame = +1

Query: 88  RHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVSP 267
           RH+SR+ PP+P    PVI VSNNIA+L  PKE PKPRQLLSLP FP    PLP K+S+S 
Sbjct: 19  RHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGH--PLPDKSSISG 76

Query: 268 PGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIKP 447
             Q   +TA+ W+KYYF     S+I+SHF +GLVQME  D   +S  K+ Q+  +RKI+P
Sbjct: 77  SRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADD---SSTQKEEQMKPMRKIRP 133

Query: 448 NEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNKP 627
           NEVM+ GA+++VPVS+ E++ISKR+D IPSGTLYPNADEI YLQRLV+YKDSAI+VLNKP
Sbjct: 134 NEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKP 193

Query: 628 PKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHWL 807
           PKLPVKG+LPVHNSMDALAAAALSY Y+EGPKLVHRLDRESSG+LL+GR K+S++ L WL
Sbjct: 194 PKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWL 253

Query: 808 F 810
           F
Sbjct: 254 F 254


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  326 bits (835), Expect = 8e-87
 Identities = 169/242 (69%), Positives = 193/242 (79%)
 Frame = +1

Query: 85  IRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVS 264
           IR +SR+ PP  A A PVIRVSNN+AQL  PKE PKPRQLLSLP FP    PLPGKNS  
Sbjct: 6   IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGL--PLPGKNS-- 61

Query: 265 PPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIK 444
                 R+TAI+W+KYYF+++  ++IQSHFNK LVQMECS+  D    +  ++  +RKIK
Sbjct: 62  -----ERVTAISWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRKIK 116

Query: 445 PNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNK 624
           PNEVM  G +IYVPVSVAES+ISKRFD IPSGTL+PNADEI YLQRL    DSAI+VLNK
Sbjct: 117 PNEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVLNK 172

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHW 804
           PP+LPVKG+LPVHNSMDALAAAALSY Y EGPKLVHRLDR+SSGLLLMGR KESI+ L W
Sbjct: 173 PPRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHLEW 232

Query: 805 LF 810
           LF
Sbjct: 233 LF 234


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  326 bits (835), Expect = 8e-87
 Identities = 169/255 (66%), Positives = 201/255 (78%)
 Frame = +1

Query: 46  MSKTLLRKGILPCIRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFP 225
           M K +  + ++   R +SR++PP PA A PVIRVSNN+A L  PK+ PKPRQLLSLP FP
Sbjct: 1   MWKNIYCRRVVSQGRSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFP 60

Query: 226 AQHQPLPGKNSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSK 405
               PLPG+NS++     + +TAI+W+KYYFD+I  S IQSHFNKGL  +EC  P+ +  
Sbjct: 61  GL--PLPGRNSMA-----SHVTAISWVKYYFDEILDSAIQSHFNKGLAHIEC--PNGSGS 111

Query: 406 GKQAQIPSLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRL 585
            +     SLRKIK N++ME GA+++V VSVAE++ISKRFDTIPSGTLYPNADEI YLQRL
Sbjct: 112 IEYGGQMSLRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRL 171

Query: 586 VMYKDSAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLL 765
           V YKDSAI+VLNKPP+LPVKGNLP+HNSMDALAAAALSY Y+EGPKLV RLDRESSGLLL
Sbjct: 172 VKYKDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLL 231

Query: 766 MGRRKESIAQLHWLF 810
           MGR KESI  L WLF
Sbjct: 232 MGRTKESIDHLQWLF 246


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  325 bits (833), Expect = 1e-86
 Identities = 169/242 (69%), Positives = 192/242 (79%)
 Frame = +1

Query: 85  IRHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVS 264
           IR +SR+ PP  A A PVIRVSNN+AQL  PKE PKPRQLLSLP FP    PLPGK S  
Sbjct: 6   IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGL--PLPGKKS-- 61

Query: 265 PPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIK 444
                 R+TAITW+KYYF+++  ++IQSHFNK LVQMECS+  D    +  ++  +RKIK
Sbjct: 62  -----ERVTAITWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRKIK 116

Query: 445 PNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNK 624
           PNEVM  G +IYVPVSVAES+ISKRFD IPSGTL+PNADEI YLQRL    DSAI+VLNK
Sbjct: 117 PNEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVLNK 172

Query: 625 PPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHW 804
           PP+LPVKG+LPVHNSMDALAAAALSY Y EGPKLVHRLDR+SSGLLLMGR KESI+ L W
Sbjct: 173 PPRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHLEW 232

Query: 805 LF 810
           LF
Sbjct: 233 LF 234


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
           gi|462405724|gb|EMJ11188.1| hypothetical protein
           PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  321 bits (822), Expect = 2e-85
 Identities = 163/241 (67%), Positives = 193/241 (80%)
 Frame = +1

Query: 88  RHFSRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVSP 267
           R +SR+ PP    A P+IRVSN++A+L  PKE PKPRQLLSLP FP    PLPGK S   
Sbjct: 16  REYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGH--PLPGKRS-HE 72

Query: 268 PGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIKP 447
            G  +R+TA++W+KYYFD I  S IQSHF +GLVQMEC    +    K+ Q+  +RKI+P
Sbjct: 73  GGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECPGMIE----KEGQMKPMRKIRP 128

Query: 448 NEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNKP 627
           +EVMEVGA++YVPVSV ES++S+RFD IPSGTLYPNADEI+Y+QR V YKDSAI+VLNKP
Sbjct: 129 SEVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAIIVLNKP 188

Query: 628 PKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHWL 807
           PKLPVKGNLPVHNSMDALAAAALSYG  +GPKLVHRLDRESSGL LMGR KES++ L WL
Sbjct: 189 PKLPVKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLDRESSGLHLMGRTKESVSLLQWL 248

Query: 808 F 810
           +
Sbjct: 249 Y 249


>gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial [Mimulus
           guttatus]
          Length = 452

 Score =  319 bits (817), Expect = 9e-85
 Identities = 165/238 (69%), Positives = 188/238 (78%)
 Frame = +1

Query: 97  SRLSPPKPARAAPVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSVSPPGQ 276
           S++ PP PA    V+RVSNNIA L  PKE PKP+QLLSLP FP    PLPG++S S    
Sbjct: 1   SKIRPPPPASTKAVLRVSNNIAHLGAPKEGPKPKQLLSLPPFPGN--PLPGRHSTSVE-- 56

Query: 277 PARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKIKPNEV 456
              +TAI+WLKYYFDD+   +IQ HFNKGLV+MEC + S  S+    Q  S RKIKP+E+
Sbjct: 57  --HVTAISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYTGQTMSTRKIKPSEI 114

Query: 457 MEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLNKPPKL 636
           ME G ++YVPVSVAE+K+SKRFD IPSGTL+PNADEI YLQRL    DSAI+VLNKPPKL
Sbjct: 115 MEEGDRVYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRL----DSAILVLNKPPKL 170

Query: 637 PVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLHWLF 810
           PVKGNL VHNSMDALAAAALSY Y+EGPKLVHRLDRESSGLLLMGR KESI+ LHWLF
Sbjct: 171 PVKGNLLVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLF 228


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  317 bits (811), Expect = 5e-84
 Identities = 165/246 (67%), Positives = 198/246 (80%), Gaps = 1/246 (0%)
 Frame = +1

Query: 76  LPCIRHFSRLSPPKPARAAPVIRVSNN-IAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGK 252
           L  IRH+SR+SPP+PA    VIRVS   +A L  PK  PKPRQLLSLP FP  +  LPGK
Sbjct: 12  LSSIRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHN--LPGK 65

Query: 253 NSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSL 432
           +     G+   +TA++W+KYYFD++  S+IQSHFNKGLVQMEC++  D S  +Q Q+  +
Sbjct: 66  HW----GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGD-SFVEQGQMKPI 120

Query: 433 RKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIM 612
           RKIK NEVME GA+I++PVS+ E +ISKR+DTIPSGTL PNADEIDYL+RLV Y+DSAI+
Sbjct: 121 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 180

Query: 613 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIA 792
           VLNKPPK+P+KG+LPVHNSMDALAAAALSY Y EGPKLVHRLDRESSGLLLMGR KES++
Sbjct: 181 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 240

Query: 793 QLHWLF 810
            L WLF
Sbjct: 241 LLTWLF 246


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  315 bits (807), Expect = 1e-83
 Identities = 165/246 (67%), Positives = 197/246 (80%), Gaps = 1/246 (0%)
 Frame = +1

Query: 76  LPCIRHFSRLSPPKPARAAPVIRVSNN-IAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGK 252
           L  IRH+SR+SPP+PA    VIRVS   +A L  PK  PKPRQLLSLP FP  +  LPGK
Sbjct: 12  LSSIRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHN--LPGK 65

Query: 253 NSVSPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSL 432
           +     G+   +TA++W+KYYFD++  S+IQSHFNKGLVQMEC++  D S  +Q Q+  +
Sbjct: 66  HW----GRQGHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGD-SFVEQGQMKPI 120

Query: 433 RKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIM 612
           RKIK NEVME GA+I++PVS+ E +ISKR+DTIPSGTL PNADEIDYL+RLV Y+DSAI+
Sbjct: 121 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 180

Query: 613 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIA 792
           VLNKPPK+P+KGNLPVHNSMDALAAAALSY   EGPKLVHRLDRESSGLLLMGR KES++
Sbjct: 181 VLNKPPKVPLKGNLPVHNSMDALAAAALSYDNNEGPKLVHRLDRESSGLLLMGRTKESVS 240

Query: 793 QLHWLF 810
            L WLF
Sbjct: 241 LLTWLF 246


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  313 bits (801), Expect = 7e-83
 Identities = 164/243 (67%), Positives = 197/243 (81%), Gaps = 1/243 (0%)
 Frame = +1

Query: 85  IRHFSRLSPPKPARAAPVIRVS-NNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSV 261
           +R +SR++P        V+RV+  N+A+L  PKE PKPRQLLSLP FP    PLPGK S+
Sbjct: 12  VRLYSRVAPQ-------VVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGF--PLPGKKSL 62

Query: 262 SPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKI 441
           +       +TAI+W+KYYFD+I  S+IQSHFNK LVQ+EC   SD+ + +    P +RKI
Sbjct: 63  NA----CHVTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKP-MRKI 117

Query: 442 KPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLN 621
           KP++VMEVGA+I++PVSVAE+ ISKRFDTIPSGTLYPNADEI+YLQRLV YKDSA++VLN
Sbjct: 118 KPSDVMEVGARIHIPVSVAETAISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLN 177

Query: 622 KPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLH 801
           KPPK+PVKGN+P+HNSMDALAAAALSYGY+EGPKLVHRLDRESSGLLLMGR KESIA L 
Sbjct: 178 KPPKVPVKGNMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQ 237

Query: 802 WLF 810
            LF
Sbjct: 238 LLF 240


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 469

 Score =  309 bits (791), Expect = 1e-81
 Identities = 164/243 (67%), Positives = 193/243 (79%), Gaps = 2/243 (0%)
 Frame = +1

Query: 88  RHFSRLSPPKPARAAP--VIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPLPGKNSV 261
           R +S  SPP PA AAP  +IRVSN++A+L  PK  PKPRQLLSLP FPA    LPGK S 
Sbjct: 16  RQYSSTSPPPPASAAPPPLIRVSNHVAKLGPPKAGPKPRQLLSLPPFPAGRH-LPGKKSY 74

Query: 262 SPPGQPARITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQIPSLRKI 441
              G  + +TA++WL+YYF +I  + I+SHFNKGLVQMEC    ++S GK      +RKI
Sbjct: 75  HD-GAVSHVTAVSWLRYYFHEIDDAAIRSHFNKGLVQMEC----ESSIGKH-----MRKI 124

Query: 442 KPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKDSAIMVLN 621
           +P+EVME GA++YV VS+AESK+S+RFD IPS TLYPNADEIDYLQRLV YKDSAI+VLN
Sbjct: 125 RPSEVMEEGARVYVAVSIAESKVSRRFDCIPSETLYPNADEIDYLQRLVKYKDSAIIVLN 184

Query: 622 KPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRKESIAQLH 801
           KPPKLPVKGN+PVHNSMDALAAAALSY Y+EGPKLVHRLDRESSG+LLMGR KES+  L 
Sbjct: 185 KPPKLPVKGNVPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLMGRTKESLYLLQ 244

Query: 802 WLF 810
            L+
Sbjct: 245 SLY 247


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  308 bits (790), Expect = 1e-81
 Identities = 167/250 (66%), Positives = 195/250 (78%), Gaps = 4/250 (1%)
 Frame = +1

Query: 73  ILPCIRHFSRLSPPKPARA---APVIRVSNNIAQLSCPKEEPKPRQLLSLPAFPAQHQPL 243
           +L  +R FSR S    A+A    PVIRVSNNI  L   KE  KP QLLSLP FP    PL
Sbjct: 11  LLFLVRRFSR-SVGHSAQANHCEPVIRVSNNITHLGRQKEGAKPSQLLSLPPFPGH--PL 67

Query: 244 PGKNSVSPPGQPA-RITAITWLKYYFDDIPASLIQSHFNKGLVQMECSDPSDTSKGKQAQ 420
           PGK   + P QP+  +TAI+W+KYYFD+IP S+IQ+HFNKGLVQ+E ++       K+ Q
Sbjct: 68  PGKKVATGPDQPSCHVTAISWIKYYFDEIPGSVIQTHFNKGLVQLEFNE---LFTSKEGQ 124

Query: 421 IPSLRKIKPNEVMEVGAKIYVPVSVAESKISKRFDTIPSGTLYPNADEIDYLQRLVMYKD 600
              LRKIK +EVMEVGA+I+VP+SVAE++ISKR+D IPSGTLYPNADEI YLQRLV YKD
Sbjct: 125 TRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKD 184

Query: 601 SAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYGYEEGPKLVHRLDRESSGLLLMGRRK 780
            AI+VLNKPPKLP+KGNLPVHNSMDALAAAALSY Y+EGP+LVHRLDRESSGL LMGR +
Sbjct: 185 PAILVLNKPPKLPLKGNLPVHNSMDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTE 244

Query: 781 ESIAQLHWLF 810
           ESI+ LH LF
Sbjct: 245 ESISHLHLLF 254