BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00033585
         (2342 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004928118.1| polyprotein [Hibiscus green spot virus] gi|3...   141   1e-30
ref|YP_762617.1| putative replicase [Streptocarpus flower break ...   138   1e-29
gb|AHW98777.1| RNA replicase readthrough protein [Wasabi mottle ...   137   2e-29
gb|AAZ81884.1| RdRp readthrough protein [Odontoglossum ringspot ...   136   4e-29
gb|AAS87224.1| RNA-dependent RNA polymerase readthrough protein ...   136   4e-29
gb|AFY98072.1| ORF1 [Ngewotan virus]                                  136   5e-29
sp|P89659.2|RDRP_ORSVC RecName: Full=Replicase large subunit; Al...   135   6e-29
gb|AAB53794.1| polyprotein [Odontoglossum ringspot virus]             135   6e-29
ref|NP_543049.1| unnamed protein product [Wasabi mottle virus] g...   135   6e-29
gb|AFT83336.1| replicase read-through product [Youcai mosaic virus]   135   6e-29
gb|AAB49498.2| 183 kDa protein, partial [Odontoglossum ringspot ...   135   6e-29
gb|AHG97553.1| 183 kDa replicase protein [Odontoglossum ringspot...   135   8e-29
ref|NP_659020.2| replicase [Sorghum chlorotic spot virus]             135   8e-29
dbj|BAA94803.1| 59-kDa readthrough protein [Sorghum chlorotic sp...   135   8e-29
gb|AEI69664.1| replicase readthrough component [Ribgrass mosaic ...   135   8e-29
ref|YP_005476600.1| replicase readthrough component [Ribgrass mo...   135   8e-29
gb|ACB73170.1| replicase read-through product [Youcai mosaic virus]   135   8e-29
sp|Q84133.2|RDRP_ORSVS RecName: Full=Replicase large subunit; Al...   134   1e-28
gb|AEI69657.1| replicase readthrough component [Ribgrass mosaic ...   134   2e-28
gb|ACV13190.1| RNA replicase [Ribgrass mosaic virus] gi|25669286...   134   2e-28

>ref|YP_004928118.1| polyprotein [Hibiscus green spot virus] gi|353703574|gb|AER13445.1|
            polyprotein [Hibiscus green spot virus]
          Length = 2645

 Score =  141 bits (356), Expect = 1e-30
 Identities = 134/499 (26%), Positives = 230/499 (46%), Gaps = 8/499 (1%)
 Frame = +2

Query: 788  EVQDNAYVPNIVPDPKVALQHVYDEAFPGNSTAQLQNVAELKKVK-DVNVNTEFYGKIEP 964
            EV++   +P  V D    LQ      FP + T  L  +      K D+++  E    ++ 
Sbjct: 2144 EVEELDNMPVDVGDYVGHLQSAIGSCFP-SCTYHLNQLDSFITYKFDLDLKLEDMS-LQD 2201

Query: 965  NKDIVAHEKLHLDAPIRTAALPVSNTP-LLDAVLASAKRNFNPPDIQLQNDPWEYAGYLA 1141
             + +    K     P+ + + P   T  L+++++A  KRN N P +  +  P+  A  L 
Sbjct: 2202 IRFVSPDRKYECMVPVLSHSGPTFRTACLVESLIAVGKRNRNVPKLDAECSPYIMADMLF 2261

Query: 1142 NKFMDWAFIPGFRNTVGRAYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVELGL 1321
            ++F+D  +         RA    P+    +D  EW   ++      +  EC   + +L +
Sbjct: 2262 DRFIDVYY---------RAEGFVPVHRGPKDVAEWCDGQENLVPDRVVGECSLYLQDLSV 2312

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLFRKIFERFDNALRPEIK 1501
              Y+ I K   K  L+  +  E + PQ ++   K   +++  +FR+I +     LR   K
Sbjct: 2313 --YNFITKGNPKVNLTDRSCEEFTAPQTVLFQGKDVNSMYCVIFRRIKKSLLKMLRISGK 2370

Query: 1502 SAGRLSDDQISI--WLTQNAA--LVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
                   D I     LT+     +VK  +A+E+D SKYDKSQGL+A + E  +M+  G++
Sbjct: 2371 YFIYTDMDAIDFAAMLTKKVPPHMVKYSKALEIDISKYDKSQGLIALLFECKIMRWFGVE 2430

Query: 1670 PGVAQIFSDSYV-GKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + Q++ D ++  +V  R   L F    Q +SG   T+LGN ++ M         E++ 
Sbjct: 2431 EHLVQLWFDMHMCSRVDDRHTSLKFEVRLQRRSGDAATLLGNTMFLMAVIAYHYKVEEMD 2490

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
            L    GDD++L  +  +   DAT   + LFNLE K       +F S +++P+ DR +FVP
Sbjct: 2491 LCAFAGDDSLLIGANHLLDTDAT-EFTDLFNLEVKFFRYEYYHFCSKFLIPVGDRWYFVP 2549

Query: 2027 DPIKMIELLGELGGSLDTVPERF-ISFKDRVRSLTKETALVPVLQRLVRARLGVPDLDVV 2203
            DP+K++  L           ER+ +S+ D V+    +  L+ VL++ V  R  VP +   
Sbjct: 2550 DPVKLLVKLARCDLRNRVHIERYRVSYMDSVQFFCNDEVLL-VLEKAVHERY-VPSMCCR 2607

Query: 2204 MCVDALAAVAGDYKQFQEI 2260
              +  L  VA D + F  +
Sbjct: 2608 DWIKLLYYVAADPEMFDSL 2626


>ref|YP_762617.1| putative replicase [Streptocarpus flower break virus]
            gi|90855256|emb|CAJ13997.1| putative replicase
            [Streptocarpus flower break virus]
          Length = 1606

 Score =  138 bits (348), Expect = 1e-29
 Identities = 125/428 (29%), Positives = 193/428 (45%), Gaps = 9/428 (2%)
 Frame = +2

Query: 800  NAYVPNIVPDPKVALQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEF----YGKIEPN 967
            N +VP       + LQ  YD   PGNST      A    + D ++N       + K  P 
Sbjct: 1118 NLFVPAAKSGDPMDLQFYYDTLLPGNSTILNNFDAVSMVLSDNSLNVRDCVIDFSKSVPV 1177

Query: 968  KDIVAHEKLHLDAPIRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANK 1147
               VA ++  L   +RTAA       LL+ ++A  KRNFN PD+    D  + AGY A K
Sbjct: 1178 PRTVASKEF-LVPVLRTAAERPRTPSLLENLVAMIKRNFNAPDLTGVIDIEQTAGYAAEK 1236

Query: 1148 FMDWAFIPGFRNTVGRAYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVELGLEK 1327
            F +   +P F          D +         WLA +D      L      D+ E+   K
Sbjct: 1237 FWEAFILPEFSGGTSGMLTTDMVH-------RWLAKQDEATIGQLANFDYVDLPEISAYK 1289

Query: 1328 YDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALRPE 1495
            +  +IK + K KL +S Q E    Q IV  SK+  A+F  +F    R++ ER D +    
Sbjct: 1290 H--MIKTQPKQKLDLSIQDEYPALQTIVYHSKQINAIFGPMFSELTRQLLERIDGS---R 1344

Query: 1496 IKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPG 1675
              S  R +  QI  + +   A  +++  +ELD SKYDKSQG     +E  + + LG+D  
Sbjct: 1345 FLSYTRKTPSQIEDFFSDLNAN-EAMDILELDISKYDKSQGEFHCAVEYKIWELLGIDAY 1403

Query: 1676 VAQIFSDSYVG-KVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLM 1852
            + +++   ++   +   + G+  +  YQ KSG   T +GN I         V  +++   
Sbjct: 1404 LEEVWKRGHMRTSLKDYTAGIKTVLWYQRKSGDVTTFIGNTIIIAACLATLVPMDRVIKA 1463

Query: 1853 IAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDP 2032
               GDD+++++ + +D  D     + ++N EAKL   N  YF   YI+  D       DP
Sbjct: 1464 AFCGDDSIIYLPKGLDLPDIQIGANLMWNFEAKLFRKNYGYFCGRYIIHHDRGAIVYYDP 1523

Query: 2033 IKMIELLG 2056
            +K+I  LG
Sbjct: 1524 LKLISKLG 1531


>gb|AHW98777.1| RNA replicase readthrough protein [Wasabi mottle virus]
          Length = 1597

 Score =  137 bits (345), Expect = 2e-29
 Identities = 130/469 (27%), Positives = 213/469 (45%), Gaps = 15/469 (3%)
 Frame = +2

Query: 695  VEDAFTSFIGMAEKTAAPTVFQERYTDSTIDEVQDNAYVPNI---VPDPKVA----LQHV 853
            V D   S I   EK +   +   +    T  ++Q +A    +   VP PK      +Q  
Sbjct: 1074 VLDPLVSVISEMEKLSNFILDMYKVESGTQXQLQIDAVFKGVNLNVPTPKSGDWRDMQFY 1133

Query: 854  YDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAHEK-LHLDAPIRTAAL 1027
            YD   PGNST   +  A    ++D+++N +   +I+ +K + V  EK + L   IRTAA 
Sbjct: 1134 YDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQVPKEKPVFLKPKIRTAAE 1192

Query: 1028 PVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGRAYKK 1207
                  L++ ++A  KRN N PD+    D  + A  +  KF D   I  F    G A  +
Sbjct: 1193 MPRTAGLIENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKFWDSYIIKEFSGIEGMARTR 1252

Query: 1208 DPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTIIKKRIKPKLSVSAQY 1384
                   Q +  WL+ ++ +    L      + V+L  +++Y  +IK + K KL +S Q 
Sbjct: 1253 -------QGFSRWLSKQESSTVGQL---ADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQD 1302

Query: 1385 ELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALRPEIKSAGRLSDDQISIWLTQN 1552
            E    Q IV  SKK  A+F  +F    R + ER D +   +     R +  QI  + +  
Sbjct: 1303 EYPALQTIVYHSKKINAIFGPMFSELTRMLLERVDTS---KFLFYTRKTPTQIEEFFSDL 1359

Query: 1553 AALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSY-VGKVSSRSL 1729
             +  +++  +ELD SKYDKSQ      +E  + ++LG+D  +A+++   +    +   + 
Sbjct: 1360 DSS-QAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLKDYTA 1418

Query: 1730 GLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQDVDPED 1909
            G+     YQ KSG   T +GN I         +  EK+      GDD+++++ + +D  D
Sbjct: 1419 GIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMEKVIKAAFCGDDSLIYIPKGLDLPD 1478

Query: 1910 ATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLG 2056
                 +  +N EAKL      YF   Y++  D       DP+K+I  LG
Sbjct: 1479 IQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLG 1527


>gb|AAZ81884.1| RdRp readthrough protein [Odontoglossum ringspot virus]
          Length = 1617

 Score =  136 bits (343), Expect = 4e-29
 Identities = 133/454 (29%), Positives = 213/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1128 VPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1186

Query: 986  EKLHLDAP-IRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P IRTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1187 QQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1244

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1245 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1290

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK + K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1291 DQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1348

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1349 -KFLFYTRKTPEQIEEFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1406

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1407 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1466

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1467 KAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1526

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  IS  D   SL
Sbjct: 1527 DPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSL 1560


>gb|AAS87224.1| RNA-dependent RNA polymerase readthrough protein [Odontoglossum
            ringspot virus]
          Length = 1612

 Score =  136 bits (343), Expect = 4e-29
 Identities = 133/454 (29%), Positives = 213/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1128 VPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1186

Query: 986  EKLHLDAP-IRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P IRTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1187 QQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1244

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1245 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1290

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK + K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1291 DQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1348

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1349 -KFLFYTRKTPEQIEEFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1406

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1407 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1466

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1467 KAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1526

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  IS  D   SL
Sbjct: 1527 DPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSL 1560


>gb|AFY98072.1| ORF1 [Ngewotan virus]
          Length = 2282

 Score =  136 bits (342), Expect = 5e-29
 Identities = 123/468 (26%), Positives = 219/468 (46%), Gaps = 16/468 (3%)
 Frame = +2

Query: 830  PKVALQHVYDEAFPGN-------STAQLQNVAELKKVKDVNVNTEFYG-KIEPNKDIVAH 985
            P  ++QHV+  +   N       + A +    +   V++ ++N E    K  P   +   
Sbjct: 1783 PSFSVQHVFSPSSAQNFIDNFFGACAYIDQSFDGWDVRNSDLNIEVGDIKFAPIGCVQLP 1842

Query: 986  EKLHLDAPIRTAALP-VSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P+    +P + +  + + +LA  KRN N P +    D    +  +    ++  
Sbjct: 1843 KRFDTMRPVLKTPMPHIRDYNMRELMLALEKRNRNVPSMNGVVDVDVSSSSMLESLLEEC 1902

Query: 1163 FIPGFRNTVGRAYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVE-LGLEKYDTI 1339
            F P       R +  +P++ +     EWL+ +  + R  +    P+  +  L L +Y+  
Sbjct: 1903 FDPALL----RFHLSEPITVSANSVGEWLSGQPLSVRPMI---VPDFALHCLALNQYNFS 1955

Query: 1340 IKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLFRKIFERFDNALRPEIKSAGRLS 1519
            IK++ KP L+V A       Q IV   K   A+F S+FR+I +R   +L P +K    +S
Sbjct: 1956 IKRKPKPNLTVDAASSYLALQTIVYHEKTINAMFCSIFREIKKRVTLSLLPHVKIFCDMS 2015

Query: 1520 DDQISIWLTQN---AALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIF 1690
             ++    L ++    +L   L  +E+D SKYDKSQ  LA   E  +M+  G+D  + +++
Sbjct: 2016 AEEFEEVLMRDIPPTSLSSYLDKLEIDISKYDKSQRELALEFECKLMKRFGVDDDLVELW 2075

Query: 1691 SDSYV-GKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGD 1867
             +++V  +V  ++  L  + +YQ KSG   T +GN ++ M    + +    + L +  GD
Sbjct: 2076 FNAHVLSQVYDKTTKLSALVSYQRKSGDASTFIGNTLFLMAVVCDLIPVSSLELALFSGD 2135

Query: 1868 DNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIE 2047
            D++L+    +            FNLE K       YF S +++P+D R  F PDP+K + 
Sbjct: 2136 DSLLY-GHSLGQFKNAQHFGLKFNLEIKFFEFEHSYFCSKFLLPVDGRWTFTPDPLKFMT 2194

Query: 2048 LLG--ELGGSLDTVPERFISFKDRVRSLTKETALVPVLQRLVRARLGV 2185
             LG  +L  SL  V E  ISF D V++  +E ++   +   +R R GV
Sbjct: 2195 KLGRHDLVNSLH-VEEYRISFVDIVKNY-REYSVCTAVALALRERYGV 2240


>sp|P89659.2|RDRP_ORSVC RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein;
            AltName: Full=RNA-directed RNA polymerase; Contains:
            RecName: Full=Replicase small subunit; AltName: Full=126
            kDa protein; AltName: Full=Methyltransferase/RNA
            helicase; Short=MT/HEL gi|2339961|dbj|BAA21828.1| 180k
            protein [Odontoglossum ringspot virus]
          Length = 1612

 Score =  135 bits (341), Expect = 6e-29
 Identities = 133/454 (29%), Positives = 213/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1128 VPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1186

Query: 986  EKLHLDAP-IRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P IRTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1187 QQQEFFTPVIRTAAERPRSRGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1244

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1245 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1290

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK + K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1291 DQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1348

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1349 -KFLFYTRKTPEQIEEFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1406

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1407 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1466

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1467 KAAFCGDDSMLYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1526

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  IS  D   SL
Sbjct: 1527 DPVKLISKLGCKHIKSLDHLEEFRISLCDVSASL 1560


>gb|AAB53794.1| polyprotein [Odontoglossum ringspot virus]
          Length = 1612

 Score =  135 bits (341), Expect = 6e-29
 Identities = 133/454 (29%), Positives = 212/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1128 VPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1186

Query: 986  EKLHLDAP-IRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P IRTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1187 QQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1244

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1245 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1290

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK   K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1291 DQYKHMIKGEPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1348

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1349 -KFLFYTRKTPEQIEEFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1406

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1407 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1466

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1467 KAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1526

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  IS  D   SL
Sbjct: 1527 DPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSL 1560


>ref|NP_543049.1| unnamed protein product [Wasabi mottle virus]
            gi|18146764|dbj|BAB82440.1| RNA replicase readthrough
            protein [Wasabi mottle virus]
          Length = 1597

 Score =  135 bits (341), Expect = 6e-29
 Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 15/469 (3%)
 Frame = +2

Query: 695  VEDAFTSFIGMAEKTAAPTVFQERYTDSTIDEVQDNAYVPNI---VPDPKVA----LQHV 853
            V D   S I   EK +   +   +    T  ++Q +A    +   VP PK      +Q  
Sbjct: 1074 VLDPLVSVISEMEKLSNFILDMYKVESGTQYQLQIDAVFKGVNLNVPTPKSGDWRDMQFY 1133

Query: 854  YDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAHEK-LHLDAPIRTAAL 1027
            YD   PGNST   +  A    ++D+++N +   +I+ +K + V  EK + L   IRTAA 
Sbjct: 1134 YDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQVPKEKPVFLKPKIRTAAE 1192

Query: 1028 PVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGRAYKK 1207
                  L++ ++A  KRN N PD+    D  + A  +  KF D   +  F    G A  +
Sbjct: 1193 MPRTAGLIENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKFWDSYIVKEFSGIEGMAKTR 1252

Query: 1208 DPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTIIKKRIKPKLSVSAQY 1384
            +  S        WL+ ++ +    L      + V+L  +++Y  +IK + K KL +S Q 
Sbjct: 1253 EGFS-------RWLSKQESSTVGQL---ADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQD 1302

Query: 1385 ELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALRPEIKSAGRLSDDQISIWLTQN 1552
            E    Q IV  SKK  A+F  +F    R + ER D +   +     R +  QI  + +  
Sbjct: 1303 EYPALQTIVYHSKKINAIFGPMFSELTRMLLERVDTS---KFLFYTRKTPTQIEEFFSDL 1359

Query: 1553 AALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSY-VGKVSSRSL 1729
             +  +++  +ELD SKYDKSQ      +E  + ++LG+D  +A+++   +    +   + 
Sbjct: 1360 DSS-QAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLKDYTA 1418

Query: 1730 GLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQDVDPED 1909
            G+     YQ KSG   T +GN I         +  EK+      GDD+++++ + +D  D
Sbjct: 1419 GIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMEKVIKAAFCGDDSLIYIPKGLDLPD 1478

Query: 1910 ATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLG 2056
                 +  +N EAKL      YF   Y++  D       DP+K+I  LG
Sbjct: 1479 IQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLG 1527


>gb|AFT83336.1| replicase read-through product [Youcai mosaic virus]
          Length = 1597

 Score =  135 bits (341), Expect = 6e-29
 Identities = 119/428 (27%), Positives = 200/428 (46%), Gaps = 13/428 (3%)
 Frame = +2

Query: 812  PNI-VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI 976
            PN+ VP PK      +Q  YD   PGNST   +  A    ++D+++N +   +I+ +K +
Sbjct: 1115 PNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSV 1173

Query: 977  VAHEK--LHLDAPIRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKF 1150
               ++  + +   +RTAA       LL+ ++A  KRN N PD+    D  + A  +  KF
Sbjct: 1174 QVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF 1233

Query: 1151 MDWAFIPGFRNTVGRAYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEK 1327
             D   I  F  T G A  ++  S        WL+ ++ +    L      + V+L  +++
Sbjct: 1234 WDAYVIKEFSGTDGMAMTRESFS-------RWLSKQESSTVGQL---ADFNFVDLPAVDE 1283

Query: 1328 YDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALRPE 1495
            Y  +IK + K KL +S Q E    Q IV  SKK  A+F  +F    R + ER D +   +
Sbjct: 1284 YKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTS---K 1340

Query: 1496 IKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPG 1675
                 R +  QI  + +   +  +++  +ELD SKYDKSQ      +E  + ++LG+D  
Sbjct: 1341 FLFYTRKTPTQIEEFFSDLDSS-QAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDW 1399

Query: 1676 VAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLM 1852
            +A+++   +    +   + G+     YQ KSG   T +GN I         +  +K+   
Sbjct: 1400 LAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKA 1459

Query: 1853 IAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDP 2032
               GDD+++++ + +D  D     +  +N EAKL      YF   Y++  D       DP
Sbjct: 1460 AFCGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDP 1519

Query: 2033 IKMIELLG 2056
            +K+I  LG
Sbjct: 1520 LKLISKLG 1527


>gb|AAB49498.2| 183 kDa protein, partial [Odontoglossum ringspot virus]
          Length = 1611

 Score =  135 bits (341), Expect = 6e-29
 Identities = 133/454 (29%), Positives = 213/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1127 VPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1185

Query: 986  EKLHLDAP-IRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P IRTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1186 QQQEFFTPVIRTAAERPRSRGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1243

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1244 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1289

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK + K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1290 DQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1347

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1348 -KFLFYTRKTPEQIEEFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1405

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1406 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1465

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1466 KAAFCGDDSMLYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1525

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  IS  D   SL
Sbjct: 1526 DPVKLISKLGCKHIKSLDHLEEFRISLCDVSASL 1559


>gb|AHG97553.1| 183 kDa replicase protein [Odontoglossum ringspot virus]
          Length = 1596

 Score =  135 bits (340), Expect = 8e-29
 Identities = 132/454 (29%), Positives = 213/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1128 VPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1186

Query: 986  EKLHLDAP-IRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P IRTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1187 QQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1244

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1245 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1290

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK + K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1291 DQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1348

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1349 -KFLFYTRKTPEQIEEFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1406

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1407 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1466

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1467 KAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1526

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  +S  D   SL
Sbjct: 1527 DPLKLISKLGCKHIKSLDHLEEFRMSLCDVSSSL 1560


>ref|NP_659020.2| replicase [Sorghum chlorotic spot virus]
          Length = 1785

 Score =  135 bits (340), Expect = 8e-29
 Identities = 129/479 (26%), Positives = 224/479 (46%), Gaps = 6/479 (1%)
 Frame = +2

Query: 842  LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYG-KIEPNKDI-VAHEKLHLDAPIR 1015
            +Q  YD  FPGNST  ++   +  +V    +  E    KI P+K++ V  EK  L   +R
Sbjct: 1305 IQDFYDRTFPGNST--IETFFDGYEVATGGIQIEVDNCKIFPHKNVKVWQEKRGLIPALR 1362

Query: 1016 TAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGR 1195
            TA        L++++LA  KRN   P +Q   + +E  G    K    A    F  T+  
Sbjct: 1363 TAMPEKRQNGLVESLLALKKRNMAAPKLQEAVNEFEIIGETIEK----AKAVFFNETLID 1418

Query: 1196 AYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVELGLEKYDTIIKKRIKPKLSVS 1375
              +   L  N++    W   +    R  + A+    + ++ L  Y+ +IK  +KPK+ ++
Sbjct: 1419 NTECSTLEANMR----WWEKQSHTARQQMLADT-RFVDQIDLCTYNFMIKNDVKPKMDLT 1473

Query: 1376 AQYELSQPQVIVSLSKKDTALFTSLFRKIFERFDNALRPEIKSAGRLSDDQISIWLTQNA 1555
             Q E +  Q +V   K   ALF  + ++I ER   AL+P +    R++ D++   + +  
Sbjct: 1474 PQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNADELDRTV-EFL 1532

Query: 1556 ALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSYVGKV-SSRSLG 1732
             + K   A E+D SK+DKS+  L       + +  GL+  +A ++  S    V   R  G
Sbjct: 1533 DVNKKYNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLEELLAFMWEKSQCQTVVKDRLNG 1592

Query: 1733 LMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQDVDPEDA 1912
            ++    YQ KSG   T   N     ++ +E++  EK   MI  GDD+++   ++V  ED 
Sbjct: 1593 IVAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAEFMIFGGDDSLILFPEEVVVEDP 1652

Query: 1913 TNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLGE---LGGSLDTV 2083
              R++SL+N + KL   N   F   +++ + DR  F PDP+K++  LG    + G +  +
Sbjct: 1653 CRRLASLWNFDCKLFSFNHNLFCGKFLLKIGDRYRFSPDPVKLMTKLGRKDIVDGQV--L 1710

Query: 2084 PERFISFKDRVRSLTKETALVPVLQRLVRARLGVPDLDVVMCVDALAAVAGDYKQFQEI 2260
             E F+S  D  +S  ++  ++  L   V+ R    + D +  + +L     D+  F  +
Sbjct: 1711 SEIFVSIGDNYKSY-RDFRILSALAAAVQERYRTNE-DALAALISLRKYISDFSLFSSM 1767


>dbj|BAA94803.1| 59-kDa readthrough protein [Sorghum chlorotic spot virus]
          Length = 507

 Score =  135 bits (340), Expect = 8e-29
 Identities = 129/479 (26%), Positives = 224/479 (46%), Gaps = 6/479 (1%)
 Frame = +2

Query: 842  LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYG-KIEPNKDI-VAHEKLHLDAPIR 1015
            +Q  YD  FPGNST  ++   +  +V    +  E    KI P+K++ V  EK  L   +R
Sbjct: 27   IQDFYDRTFPGNST--IETFFDGYEVATGGIQIEVDNCKIFPHKNVKVWQEKRGLIPALR 84

Query: 1016 TAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGR 1195
            TA        L++++LA  KRN   P +Q   + +E  G    K    A    F  T+  
Sbjct: 85   TAMPEKRQNGLVESLLALKKRNMAAPKLQEAVNEFEIIGETIEK----AKAVFFNETLID 140

Query: 1196 AYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVELGLEKYDTIIKKRIKPKLSVS 1375
              +   L  N++    W   +    R  + A+    + ++ L  Y+ +IK  +KPK+ ++
Sbjct: 141  NTECSTLEANMR----WWEKQSHTARQQMLADT-RFVDQIDLCTYNFMIKNDVKPKMDLT 195

Query: 1376 AQYELSQPQVIVSLSKKDTALFTSLFRKIFERFDNALRPEIKSAGRLSDDQISIWLTQNA 1555
             Q E +  Q +V   K   ALF  + ++I ER   AL+P +    R++ D++   + +  
Sbjct: 196  PQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNADELDRTV-EFL 254

Query: 1556 ALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSYVGKV-SSRSLG 1732
             + K   A E+D SK+DKS+  L       + +  GL+  +A ++  S    V   R  G
Sbjct: 255  DVNKKYNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLEELLAFMWEKSQCQTVVKDRLNG 314

Query: 1733 LMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQDVDPEDA 1912
            ++    YQ KSG   T   N     ++ +E++  EK   MI  GDD+++   ++V  ED 
Sbjct: 315  IVAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAEFMIFGGDDSLILFPEEVVVEDP 374

Query: 1913 TNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLGE---LGGSLDTV 2083
              R++SL+N + KL   N   F   +++ + DR  F PDP+K++  LG    + G +  +
Sbjct: 375  CRRLASLWNFDCKLFSFNHNLFCGKFLLKIGDRYRFSPDPVKLMTKLGRKDIVDGQV--L 432

Query: 2084 PERFISFKDRVRSLTKETALVPVLQRLVRARLGVPDLDVVMCVDALAAVAGDYKQFQEI 2260
             E F+S  D  +S  ++  ++  L   V+ R    + D +  + +L     D+  F  +
Sbjct: 433  SEIFVSIGDNYKSY-RDFRILSALAAAVQERYRTNE-DALAALISLRKYISDFSLFSSM 489


>gb|AEI69664.1| replicase readthrough component [Ribgrass mosaic virus]
          Length = 1601

 Score =  135 bits (340), Expect = 8e-29
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 10/415 (2%)
 Frame = +2

Query: 842  LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKD--IVAHEKLHLDAPIR 1015
            +Q  YD   PGNST   +  A    ++D+++N +   +I+ +K   I   +   L   IR
Sbjct: 1134 MQFYYDALLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQIPKEQPSFLKPKIR 1192

Query: 1016 TAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGR 1195
            TAA       LL+ ++A  KRN N PD+    D  + A  +A KF D      F  T   
Sbjct: 1193 TAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYIDKEFSGT--- 1249

Query: 1196 AYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTIIKKRIKPKLSV 1372
                + +S   + +  WL+ ++    S +      + V+L  +++Y  +IK + K KL +
Sbjct: 1250 ----NKMSLTRESFSRWLSKQE---TSTIGQLADFNFVDLPAVDEYKHMIKSQPKQKLDL 1302

Query: 1373 SAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNA--LRPEIKSAGRLSDDQIS 1534
            S Q E    Q IV  SKK  A+F  +F    R + ER D++  L    K+ G++ +    
Sbjct: 1303 SIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSSKFLFYTRKTPGQIEEFFSD 1362

Query: 1535 IWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSY-VGK 1711
            +  TQ      ++  +ELD SKYDKSQ      +E  + ++LG+D  +A+++   +    
Sbjct: 1363 LDSTQ------AMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTT 1416

Query: 1712 VSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQ 1891
            +   + G+     YQ KSG   T +GN I         +  +K+      GDD+++++ +
Sbjct: 1417 LKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVIKAAFCGDDSLIYIPK 1476

Query: 1892 DVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLG 2056
             +D  D     + ++N EAKL      YF   Y++  D       DP+K+I  LG
Sbjct: 1477 GIDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLG 1531


>ref|YP_005476600.1| replicase readthrough component [Ribgrass mosaic virus]
            gi|337271810|gb|AEI69660.1| replicase readthrough
            component [Ribgrass mosaic virus]
          Length = 1601

 Score =  135 bits (340), Expect = 8e-29
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 10/415 (2%)
 Frame = +2

Query: 842  LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKD--IVAHEKLHLDAPIR 1015
            +Q  YD   PGNST   +  A    ++D+++N +   +I+ +K   I   +   L   IR
Sbjct: 1134 MQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQIPKEQPSFLKPKIR 1192

Query: 1016 TAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGR 1195
            TAA       LL+ ++A  KRN N PD+    D  + A  +A KF D      F  T   
Sbjct: 1193 TAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYIDKEFSGT--- 1249

Query: 1196 AYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTIIKKRIKPKLSV 1372
                + +S   + +  WL+ ++    S +      + V+L  +++Y  +IK + K KL +
Sbjct: 1250 ----NKMSLTRESFSRWLSKQE---TSTIGQLADFNFVDLPAVDEYKHMIKSQPKQKLDL 1302

Query: 1373 SAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNA--LRPEIKSAGRLSDDQIS 1534
            S Q E    Q IV  SKK  A+F  +F    R + ER D++  L    K+ G++ +    
Sbjct: 1303 SIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSSKFLFYTRKTPGQIEEFFSD 1362

Query: 1535 IWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSY-VGK 1711
            +  TQ      ++  +ELD SKYDKSQ      +E  + ++LG+D  +A+++   +    
Sbjct: 1363 LDSTQ------AMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTT 1416

Query: 1712 VSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQ 1891
            +   + G+     YQ KSG   T +GN I         +  +K+      GDD+++++ +
Sbjct: 1417 LKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVIKAAFCGDDSLIYIPK 1476

Query: 1892 DVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLG 2056
             +D  D     + ++N EAKL      YF   Y++  D       DP+K+I  LG
Sbjct: 1477 GIDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLG 1531


>gb|ACB73170.1| replicase read-through product [Youcai mosaic virus]
          Length = 1596

 Score =  135 bits (340), Expect = 8e-29
 Identities = 118/424 (27%), Positives = 197/424 (46%), Gaps = 12/424 (2%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDIVAHE 988
            VP PK      +Q  YD   PGNST   +  A    ++D+++N +   +I+ +K +   +
Sbjct: 1118 VPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQVPK 1176

Query: 989  K--LHLDAPIRTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            +  + +   +RTAA       LL+ ++A  KRN N PD+    D  + A  +  KF D  
Sbjct: 1177 ERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKFWDAY 1236

Query: 1163 FIPGFRNTVGRAYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTI 1339
             I  F  T G A  K+  S        WL+ ++ +    L      + V+L  +++Y  +
Sbjct: 1237 VIKEFSGTDGMAMTKESFS-------RWLSKQESSTVGQL---ADFNFVDLPAVDEYKHM 1286

Query: 1340 IKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALRPEIKSA 1507
            IK + K KL +S Q E    Q IV  SKK  A+F  +F    R + ER D +   +    
Sbjct: 1287 IKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTS---KFLFY 1343

Query: 1508 GRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQI 1687
             R +  QI  + +   +  +++  +ELD SKYDKSQ      +E  + ++LG+D  +A++
Sbjct: 1344 TRKTPTQIEEFFSDLDSS-QAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEV 1402

Query: 1688 FSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKG 1864
            +   +    +   + G+     YQ KSG   T +GN I         +  +K+      G
Sbjct: 1403 WRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAFCG 1462

Query: 1865 DDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMI 2044
            DD+++++ + +D  D     +  +N EAKL      YF   Y++  D       DP+K+I
Sbjct: 1463 DDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLI 1522

Query: 2045 ELLG 2056
              LG
Sbjct: 1523 SKLG 1526


>sp|Q84133.2|RDRP_ORSVS RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein;
            AltName: Full=RNA-directed RNA polymerase; Contains:
            RecName: Full=Replicase small subunit; AltName: Full=126
            kDa protein; AltName: Full=Methyltransferase/RNA
            helicase; Short=MT/HEL gi|383215011|gb|AAC55012.2| 183
            kDa readthrough protein [Odontoglossum ringspot virus]
          Length = 1612

 Score =  134 bits (338), Expect = 1e-28
 Identities = 132/454 (29%), Positives = 212/454 (46%), Gaps = 19/454 (4%)
 Frame = +2

Query: 821  VPDPKVA----LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKDI-VAH 985
            VP PK      +Q  YD   PGNST   +  A    +++ N+N +    I+ +K + V  
Sbjct: 1128 VPCPKSGYISDMQTYYDTLVPGNSTILNEYDAVTMNLRENNLNVKDC-TIDFSKSVSVPR 1186

Query: 986  EKLHLDAPI-RTAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWA 1162
            ++     P  RTAA    +  LL+ ++A  KRNFN PD+    D  + A  + NKF D  
Sbjct: 1187 QQQEFFTPAHRTAAERPRSAGLLENLVAMIKRNFNSPDLTGILDIEDTAELVVNKFWD-- 1244

Query: 1163 FIPGFRNTVGRAYKKDPLS------FNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GL 1321
                       AY  D LS           +  W+A ++   +S +      D V+L  +
Sbjct: 1245 -----------AYIIDELSGGNVTPMTSDAFHRWMAKQE---KSTIGQLADFDFVDLPAI 1290

Query: 1322 EKYDTIIKKRIKPKLSVSAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNALR 1489
            ++Y  +IK + K KL +S Q E +  Q IV  SK+  A+F  LF    R++ ER D++  
Sbjct: 1291 DQYKHMIKAQPKQKLGLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLERIDSS-- 1348

Query: 1490 PEIKSAGRLSDDQISIWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLD 1669
             +     R + +QI  + +   + V  +  +ELD SKYDKSQ      +E L+ ++LGL+
Sbjct: 1349 -KFLFYTRKTPEQIEAFFSDLDSTVP-MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLN 1406

Query: 1670 PGVAQIFSDSY-VGKVSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIR 1846
              + +++   +    +   + G+     YQ KSG   T +GN +         +  +K+ 
Sbjct: 1407 GFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIPMDKVI 1466

Query: 1847 LMIAKGDDNVLWVSQDVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVP 2026
                 GDD++L++ + +D  D  +  + ++N EAKL      YF   YI+  D       
Sbjct: 1467 KAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDRGAIVYY 1526

Query: 2027 DPIKMIELLG-ELGGSLDTVPERFISFKDRVRSL 2125
            DP+K+I  LG +   SLD + E  IS  D   SL
Sbjct: 1527 DPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSL 1560


>gb|AEI69657.1| replicase readthrough component [Ribgrass mosaic virus]
          Length = 1601

 Score =  134 bits (337), Expect = 2e-28
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 10/415 (2%)
 Frame = +2

Query: 842  LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKD--IVAHEKLHLDAPIR 1015
            +Q  YD   PGNST   +  A    ++D+++N +   +I+ +K   I   +   L   IR
Sbjct: 1134 MQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQIPKEQPSFLKPKIR 1192

Query: 1016 TAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGR 1195
            TAA       LL+ ++A  KRN N PD+    D  + A  +A KF D      F  T   
Sbjct: 1193 TAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYIDKEFSGT--- 1249

Query: 1196 AYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTIIKKRIKPKLSV 1372
                + +S   + +  WL+ ++ +    L      + V+L  +++Y  +IK + K KL +
Sbjct: 1250 ----NKMSLTRESFSRWLSKQESSTVGQL---ADFNFVDLPAVDEYKHMIKSQPKQKLDL 1302

Query: 1373 SAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNA--LRPEIKSAGRLSDDQIS 1534
            S Q E    Q IV  SKK  A+F  +F    R + ER D++  L    K+ G++ +    
Sbjct: 1303 SIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSSKFLFYTRKTPGQIEEFFSD 1362

Query: 1535 IWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSY-VGK 1711
            +  TQ      ++  +ELD SKYDKSQ      +E  + ++LG+D  +A+++   +    
Sbjct: 1363 LDSTQ------AMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTT 1416

Query: 1712 VSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQ 1891
            +   + G+     YQ KSG   T +GN I         +  +K+      GDD+++++ +
Sbjct: 1417 LKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVIKAAFCGDDSLVYIPK 1476

Query: 1892 DVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLG 2056
             +D  D     + ++N EAKL      YF   Y++  D       DP+K+I  LG
Sbjct: 1477 GMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLG 1531


>gb|ACV13190.1| RNA replicase [Ribgrass mosaic virus] gi|256692860|gb|ACV13194.1| RNA
            replicase [Ribgrass mosaic virus]
          Length = 1601

 Score =  134 bits (337), Expect = 2e-28
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 10/415 (2%)
 Frame = +2

Query: 842  LQHVYDEAFPGNSTAQLQNVAELKKVKDVNVNTEFYGKIEPNKD--IVAHEKLHLDAPIR 1015
            +Q  YD   PGNST   +  A    ++D+++N +   +I+ +K   I   +   L   IR
Sbjct: 1134 MQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDC-RIDFSKSVQIPKEQPSFLKPKIR 1192

Query: 1016 TAALPVSNTPLLDAVLASAKRNFNPPDIQLQNDPWEYAGYLANKFMDWAFIPGFRNTVGR 1195
            TAA       LL+ ++A  KRN N PD+    D  + A  +A KF D      F  T   
Sbjct: 1193 TAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYIDKEFSGT--- 1249

Query: 1196 AYKKDPLSFNVQDYLEWLATRDGNYRSALEAECPEDMVEL-GLEKYDTIIKKRIKPKLSV 1372
                + +S   + +  WL+ ++ +    L      + V+L  +++Y  +IK + K KL +
Sbjct: 1250 ----NKMSLTRESFSRWLSRQESSTVGQL---ADFNFVDLPAVDEYKHMIKSQPKQKLDL 1302

Query: 1373 SAQYELSQPQVIVSLSKKDTALFTSLF----RKIFERFDNA--LRPEIKSAGRLSDDQIS 1534
            S Q E    Q IV  SKK  A+F  +F    R + ER D++  L    K+ G++ +    
Sbjct: 1303 SIQDEYPALQTIVYHSKKINAIFGPMFAELTRMLLERVDSSKFLFYTRKTPGQIEEFFSD 1362

Query: 1535 IWLTQNAALVKSLRAIELDSSKYDKSQGLLARMIESLVMQELGLDPGVAQIFSDSY-VGK 1711
            +  TQ      ++  +ELD SKYDKSQ      +E  + ++LG+D  +A+++   +    
Sbjct: 1363 LDSTQ------AMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTT 1416

Query: 1712 VSSRSLGLMFISAYQMKSGAPQTMLGNLIYNMVSAMESVGKEKIRLMIAKGDDNVLWVSQ 1891
            +   + G+     YQ KSG   T +GN I         +  +K+      GDD+++++ +
Sbjct: 1417 LKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVIKAAFCGDDSLVYIPK 1476

Query: 1892 DVDPEDATNRMSSLFNLEAKLIYNNVLYFSSGYIVPLDDRIWFVPDPIKMIELLG 2056
             +D  D     + ++N EAKL      YF   Y++  D       DP+K+I  LG
Sbjct: 1477 GMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLG 1531