BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00030462
         (2020 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     597   e-168
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   584   e-164
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   581   e-163
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   580   e-162
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   561   e-157
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   557   e-156
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   547   e-153
gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus...   543   e-151
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   543   e-151
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   541   e-151
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      538   e-150
ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prun...   531   e-148
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   531   e-148
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              530   e-147
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   530   e-147
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   530   e-147
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   526   e-146
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   526   e-146
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha...   525   e-146
dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI...   523   e-145

>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  597 bits (1540), Expect = e-168
 Identities = 333/576 (57%), Positives = 390/576 (67%), Gaps = 28/576 (4%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHTNSL--------KVREPVCSRARCILXXXXXXXXXXXX 1737
            M CLLPQF C PDT S  +   T+SL        K R+ + S A+C+L            
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARD-INSLAQCVLSTTSPSTSVGAT 59

Query: 1736 XXTVVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXX 1557
               V+ VEKL  PSL+A++ SVT++RP +Y G  GPP + NFEATLATE LL S      
Sbjct: 60   Y--VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIA 117

Query: 1556 XXXXXXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGT-----KTKQD------------ 1428
                                 L +    R     LV +     KT Q             
Sbjct: 118  AAAAEAVTLAKAAVKVAKDAALLVRPSTRAESISLVSSEARNIKTAQAASRVRDSLRAEM 177

Query: 1427 ---EEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXAN 1257
               E+H  + + K+S +L PT++EL++ + QL  SI VRS RQ+E             AN
Sbjct: 178  ALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAAN 237

Query: 1256 VVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLLKLENL 1077
            VV     ++ RKKR ++ +VD+SDP                    E SEGIQ LLKLE L
Sbjct: 238  VVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKL 297

Query: 1076 HRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAKNYQGA 897
              ELAERCG  PTF QWA AAGVDQKTLR+RINYG+LCK+KM+KSN+RLVISIAKNYQGA
Sbjct: 298  QEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGA 357

Query: 896  GMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMV 717
            GMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP HMV
Sbjct: 358  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 417

Query: 716  EATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNL 537
            EATYRV+EARK LY ENGR PN+EE+AEATGLSMKRL AVLLTP+ PRSL+QKIGINQNL
Sbjct: 418  EATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 477

Query: 536  KPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIG 357
            KP E+I  P AET ED+L +QFM+QDL++VLDSLN RE QVIRWRFG+ DGRM+TLQEIG
Sbjct: 478  KPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIG 537

Query: 356  ELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            ELMGVSRERIRQIE+CAFRKLKNKKRTK LQQYL+S
Sbjct: 538  ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  584 bits (1506), Expect = e-164
 Identities = 329/590 (55%), Positives = 381/590 (64%), Gaps = 42/590 (7%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHTNSL-------KVREPVCSRARCILXXXXXXXXXXXXX 1734
            M CLLPQFKC PDT S H+RT  N         K +EP+C R  C+L             
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83

Query: 1733 XTVVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXX 1554
              V+DVEKL LPSLEAH+N+V A+R  +Y G +GP T+ N   +LATE L          
Sbjct: 84   --VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141

Query: 1553 XXXXXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQ------------------- 1431
                              +D  LM      HH+    K+K                    
Sbjct: 142  SAEAVALARAAVKVA---KDAALMVN----HHNSAKPKSKPAISLSADTNTSMWAQLTER 194

Query: 1430 ----------------DEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEX 1299
                            +EE+S Q     S +L PT +ELKL E Q+  SI VRS RQTE 
Sbjct: 195  ERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTER 254

Query: 1298 XXXXXXXXXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXE 1119
                        ANV+     ++ R+KR ++ EVDYSDP                    +
Sbjct: 255  KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314

Query: 1118 FSEGIQKLLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSN 939
             S GIQ LLKLE L   L+ERCG  PTF QWA AAGVDQ+ LR+R+NYG+LCK+KM+ SN
Sbjct: 315  LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374

Query: 938  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSL 759
            IRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSL
Sbjct: 375  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434

Query: 758  SEQSRTIRLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRP 579
            S+QSRTIRLP HMVEATYRV+EARK LY ENGRHPNNEE+AEATGLSMKRL AVLLTP+ 
Sbjct: 435  SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKA 494

Query: 578  PRSLDQKIGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRF 399
            PRSLDQK GINQNLKP EVI  P AET EDLL K+FM++DLE+VLD+LN RE QV+RWRF
Sbjct: 495  PRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRF 554

Query: 398  GLKDGRMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            GL+DGRM+TLQEIGELMGVSRERIRQIE+ AFRKLKNKKRTK L QY ++
Sbjct: 555  GLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  581 bits (1497), Expect = e-163
 Identities = 327/590 (55%), Positives = 380/590 (64%), Gaps = 42/590 (7%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHTNSL-------KVREPVCSRARCILXXXXXXXXXXXXX 1734
            M CLLPQFKC PDT S H+RT  N         K +EP+C R  C+L             
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83

Query: 1733 XTVVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXX 1554
              V+DVEKL LPSLEAH+N+V A+R  +Y G +GP T+ N   +LATE L          
Sbjct: 84   --VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141

Query: 1553 XXXXXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQ------------------- 1431
                              +D  LM      HH+    K+K                    
Sbjct: 142  SAEAVALARAAVKVA---KDAALMVN----HHNSAKPKSKPAISLSADTSTSMWAQLTER 194

Query: 1430 ----------------DEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEX 1299
                            +EE+S Q     S +L PT +ELKL E Q+  SI VRS RQTE 
Sbjct: 195  ERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTER 254

Query: 1298 XXXXXXXXXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXE 1119
                        ANV+     ++ R+KR ++ EVDYSDP                    +
Sbjct: 255  KARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314

Query: 1118 FSEGIQKLLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSN 939
             S GIQ LLKLE L   L+ERCG  PTF QWA AAGVDQ+ LR+R+NYG+LCK+KM+ SN
Sbjct: 315  LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374

Query: 938  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSL 759
            IRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSL
Sbjct: 375  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434

Query: 758  SEQSRTIRLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRP 579
            S+QSRTIRLP HMVEATYRV+EARK LY ENGRHPNNEE+A+ATGLSMKRL AVLL P+ 
Sbjct: 435  SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKA 494

Query: 578  PRSLDQKIGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRF 399
            PRSLDQK GINQNLKP EVI  P AET EDLL K+FM++DLE+VLD+LN RE QV+RWRF
Sbjct: 495  PRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRF 554

Query: 398  GLKDGRMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            GL+DGRM+TLQEIGELMGVSRERIRQIE+ AFRKLKNKKRTK L QY ++
Sbjct: 555  GLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  580 bits (1494), Expect = e-162
 Identities = 345/624 (55%), Positives = 390/624 (62%), Gaps = 76/624 (12%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTH--------------------------TNSLKV------ 1809
            M CLLPQFKC PDT S  +RTH                          TN  KV      
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 1808 -----REPVCSRARCILXXXXXXXXXXXXXXTVVDVEKLGLPSLEAHTNSVTADRPLSYI 1644
                 +E +C R +C+L               V+DVEKL LPS EAH NSV  DRP +YI
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSSTSTTATA--VLDVEKLRLPSFEAHPNSVAVDRPWTYI 118

Query: 1643 GPIGPPTKPNFEATLATEALLPSXXXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQ---- 1476
            G  GPP++ +  ATLAT+ LL S                        A+D  LM +    
Sbjct: 119  GATGPPSEASLGATLATDNLLTS--DEAVIAAAAAEAVALARAAVKVAKDAALMAENYNY 176

Query: 1475 VRTIHHHLVGTKTKQDEEHSIQFSQKDSENLI---PTD---------------------- 1371
             +T     V   T         F++ +   +I   PTD                      
Sbjct: 177  AKTEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEP 236

Query: 1370 --DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXANVVFGNPRTSRRKKRVALHEV 1197
              +EL+  E QL  SI VRS RQTE             ANVV     ++ RK+R AL +V
Sbjct: 237  TNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDV 296

Query: 1196 DYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLLKLENLHRELAERCGVQPTFVQWAEA 1017
            DYSDP                    E SEGIQ LLKLE L  ELAERCG QPTF QWA A
Sbjct: 297  DYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAA 356

Query: 1016 AGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAE 837
            AGVDQKTLR R+NYGV CK+KM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAE
Sbjct: 357  AGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 416

Query: 836  KFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMVEATYRVREARKLLYCENGRH 657
            KFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP HMVEATYRV+EARK LY ENGRH
Sbjct: 417  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 476

Query: 656  PNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNLKP--------LEVITYPGAE 501
            P+NEE+AEATGLSMKRLTAVLLTP+ PRSLDQKIGINQNLKP         EVI  P AE
Sbjct: 477  PDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAE 536

Query: 500  TTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIGELMGVSRERIRQ 321
            T ED+L KQFM++DLE+VLDSL+ RE QVIRWRFG++DGRM+TLQEIGELMGVSRERIRQ
Sbjct: 537  TAEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQ 596

Query: 320  IETCAFRKLKNKKRTKILQQYLVS 249
            IE+CAFRKLKNKKRTK LQQYL+S
Sbjct: 597  IESCAFRKLKNKKRTKHLQQYLLS 620


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  561 bits (1446), Expect = e-157
 Identities = 324/583 (55%), Positives = 380/583 (65%), Gaps = 35/583 (6%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTH-------TNSLKVREPVCSRARCILXXXXXXXXXXXXX 1734
            M CLLPQFKC PDT S H+R +       T S K REP+  RA+CIL             
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58

Query: 1733 XTVVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXX 1554
              V+D+EKL LPS EA ++S+  + P +Y           F +TLATE L+ S       
Sbjct: 59   --VLDLEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAA 107

Query: 1553 XXXXXXXXXXXXXXXXXAQDL----------------------------TLMEQVRTIHH 1458
                                L                            T  E+ R I  
Sbjct: 108  AAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWPQFTETERARIIGD 167

Query: 1457 HLVGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXX 1278
              V T+T   EE S+Q S K+S+ L  T  EL+L + QL   I VRS RQTE        
Sbjct: 168  S-VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARA 226

Query: 1277 XXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQK 1098
                 ++VV   P ++ +KKR +L EVDYSDP                    E S  IQ 
Sbjct: 227  VEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQD 286

Query: 1097 LLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISI 918
            LLKLE L  ELAER G QPTF QWA AAGVDQ+TLRKRIN+G +CK+KM+KSNIRLVISI
Sbjct: 287  LLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISI 346

Query: 917  AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTI 738
            AKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTI
Sbjct: 347  AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 406

Query: 737  RLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQK 558
            RLP HMVEATYRV+EARK LY ENGRHP++EE+AEA GLSMKRL+AVLLTP+ PRSLDQK
Sbjct: 407  RLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQK 466

Query: 557  IGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRM 378
            IG+N +LKP EVI  P AET E+LL KQFM+QDLE+VL++LN RE QV+RWRFGL+DGRM
Sbjct: 467  IGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRM 526

Query: 377  RTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            +TLQEIGE+MGVSRERIRQIE+ AFRKLKNKKRTK L+QYL++
Sbjct: 527  KTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  557 bits (1436), Expect = e-156
 Identities = 303/524 (57%), Positives = 362/524 (69%), Gaps = 31/524 (5%)
 Frame = -3

Query: 1727 VVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATE-------------- 1590
            ++D+E+  LPSL  +++S+  +RP +Y G IGPPT+ N+ A LATE              
Sbjct: 95   LLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAA 154

Query: 1589 -----------------ALLPSXXXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRTIH 1461
                             ALL S                        AQ L     +R   
Sbjct: 155  AEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLETEPTLRI-- 212

Query: 1460 HHLVGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXX 1281
               + ++T   E+H +Q +  +SEN+ P ++E +L + QL   I  RS RQTE       
Sbjct: 213  GDSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRTR 272

Query: 1280 XXXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQ 1101
                  A++V     ++ RKKR +L +VD+SDP                    E SEGIQ
Sbjct: 273  AAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQ 332

Query: 1100 KLLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVIS 921
            +LLKLE L  +LA+RCG QPTF QWA AAGVDQKTLRKR+NYG++CK+KM+KSNIRLVIS
Sbjct: 333  ELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVIS 392

Query: 920  IAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRT 741
            IAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRT
Sbjct: 393  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 452

Query: 740  IRLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQ 561
            IRLP HMVEATYRVREA+K LY  NGRHPN+EE+AEATGLSMKRL AVLLTP+ PRSL+Q
Sbjct: 453  IRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQ 512

Query: 560  KIGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGR 381
            KIGINQNLKP +VI  P AET EDLL K+FM+QDLE+VLDSLN RE QVIRWRFG++DGR
Sbjct: 513  KIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGR 572

Query: 380  MRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            M+TLQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY++S
Sbjct: 573  MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  547 bits (1410), Expect = e-153
 Identities = 305/528 (57%), Positives = 353/528 (66%), Gaps = 35/528 (6%)
 Frame = -3

Query: 1727 VVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXXXX 1548
            V+DVEKL LPSLEAH+N+V A+R  +Y G +GP T+ N   +LATE L            
Sbjct: 4    VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 63

Query: 1547 XXXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQ--------------------- 1431
                            +D  LM      HH+    K+K                      
Sbjct: 64   EAVALARAAVKVA---KDAALMVN----HHNSAKPKSKPAISLSADTNTSMWAQLTERER 116

Query: 1430 --------------DEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXX 1293
                          +EE+S Q     S +L PT +ELKL E Q+  SI VRS RQTE   
Sbjct: 117  ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 176

Query: 1292 XXXXXXXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFS 1113
                      ANV+     ++ R+KR ++ EVDYSDP                    + S
Sbjct: 177  RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236

Query: 1112 EGIQKLLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIR 933
             GIQ LLKLE L   L+ERCG  PTF QWA AAGVDQ+ LR+R+NYG+LCK+KM+ SNIR
Sbjct: 237  AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296

Query: 932  LVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSE 753
            LVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+
Sbjct: 297  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356

Query: 752  QSRTIRLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPR 573
            QSRTIRLP HMVEATYRV+EARK LY ENGRHPNNEE+AEATGLSMKRL AVLLTP+ PR
Sbjct: 357  QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPR 416

Query: 572  SLDQKIGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGL 393
            SLDQK GINQNLKP EVI  P AET EDLL K+FM++DLE+VLD+LN RE QV+RWRFGL
Sbjct: 417  SLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGL 476

Query: 392  KDGRMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            +DGRM+TLQEIGELMGVSRERIRQIE+ AFRKLKNKKRTK L QY ++
Sbjct: 477  EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524


>gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus guttatus]
          Length = 589

 Score =  543 bits (1399), Expect = e-151
 Identities = 313/593 (52%), Positives = 384/593 (64%), Gaps = 46/593 (7%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHT----NSLKVREPVCSRARCILXXXXXXXXXXXXXXTV 1725
            M CLLPQFKCSPDT + ++++ T    +S K RE +  R +C+L               +
Sbjct: 1    MSCLLPQFKCSPDTFAVNFKSQTLFTVHSSKSRESINFRTQCVLSTTSPPPTMAATTT-L 59

Query: 1724 VDVEKLGLPSLEAHTNSVTADRP--------------------------LSYIGPIGPPT 1623
            ++ EKL L  LE   NS+ ADR                           L+Y+G +GPP+
Sbjct: 60   LEFEKLQLSPLETIPNSLPADRSWTTPRAKTSLLDLDKLTSLPVASNKTLTYVGSVGPPS 119

Query: 1622 KPNFEATLATEALLPSXXXXXXXXXXXXXXXXXXXXXXXXAQ------------DLTLME 1479
            + N  A L  EAL+ S                                      D     
Sbjct: 120  EINLGANLDKEALITSDEAVITAAASEALALAKAAVKVAKDAAMMVSLHRSTKPDTKSFL 179

Query: 1478 QVRTIHHHLVGTKTK----QDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGR 1311
            +V T    +V  + +    ++++H +  S    E   P+ +EL+L ++QL +SI VRS R
Sbjct: 180  EVDTSAERVVVREAEIGSGENDDHVLGESDDSEE---PSAEELELLDLQLSSSIAVRSKR 236

Query: 1310 QTEXXXXXXXXXXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXX 1131
            Q E             ANVV     +S+ KKR  + EVDYSDP                 
Sbjct: 237  QIERKVRRGRAAEKAAANVVSVKSGSSK-KKRSPVQEVDYSDPLRYLRATTSSTRLLTAS 295

Query: 1130 XXXEFSEGIQKLLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKM 951
                 SEGIQ LLKLE L  EL ER G +P++ QWA AAGVDQKTLR++INYG+LCK+KM
Sbjct: 296  EEQVLSEGIQVLLKLERLQVELIERFGGEPSYSQWAAAAGVDQKTLREQINYGILCKDKM 355

Query: 950  VKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAV 771
            +KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV
Sbjct: 356  IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAV 415

Query: 770  QKSLSEQSRTIRLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLL 591
            +KSLS+QSRTIRLP HMVEATYRV+EARK LY ENGR PN+EE+AEATGLSMKRL+AV+L
Sbjct: 416  RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRVPNDEEVAEATGLSMKRLSAVML 475

Query: 590  TPRPPRSLDQKIGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVI 411
            TP+PPRSLDQKIG+NQ+LKP EVI+ P AET+E+LL KQFM+QDL  VLDSLN RE QV+
Sbjct: 476  TPKPPRSLDQKIGVNQDLKPSEVISDPEAETSEELLIKQFMKQDLADVLDSLNPREKQVV 535

Query: 410  RWRFGLKDGRMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLV 252
            +WRFG++DGRM+TLQEIGELMGVSRER+RQIE+CAFRKLKNKKRTK LQQY++
Sbjct: 536  KWRFGIEDGRMKTLQEIGELMGVSRERVRQIESCAFRKLKNKKRTKQLQQYVM 588


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  543 bits (1399), Expect = e-151
 Identities = 314/585 (53%), Positives = 378/585 (64%), Gaps = 37/585 (6%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHTNS--------------LKVREPVCSRARCILXXXXXX 1755
            M CLLPQFKC P+T S  ++T  N                KVR+P   R +CIL      
Sbjct: 1    MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 1754 XXXXXXXXTVVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNF----EATLATEA 1587
                      +DV++L LP  + +T+SV+ +R  SY+G +            EA++A  A
Sbjct: 61   TSTGTAT--TLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAA 118

Query: 1586 ------------------LLPSXXXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRT-I 1464
                              LL +                        AQ    ME  R  I
Sbjct: 119  AEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQ---FMESERADI 175

Query: 1463 HHHLVGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXX 1284
                VG   +  E  +++ S  +S+++ PT +EL+L + +L  SI V+S RQTE      
Sbjct: 176  IGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRT 235

Query: 1283 XXXXXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGI 1104
                    +V+     +S RKKR ++ EVDYSDP                    E SEGI
Sbjct: 236  RAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGI 295

Query: 1103 QKLLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVI 924
            Q LLKLE L  EL ER G +PTF QWA AAGV+Q+TLRKR+NYG LCK+KM+KSNIRLVI
Sbjct: 296  QDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVI 355

Query: 923  SIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSR 744
            SIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+K LS+QSR
Sbjct: 356  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSR 415

Query: 743  TIRLPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLD 564
            TIRLP HMVEATYRV+EARK L  ENGRHP+++EIAEA GLSMKRL AVL+TP+ PRSL+
Sbjct: 416  TIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLE 475

Query: 563  QKIGINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDG 384
            QKIGINQNLKP EVI+ P AET ED+L KQFM+QDLE+VLDSLN RE QVIRWRFG++DG
Sbjct: 476  QKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDG 535

Query: 383  RMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            RM+TLQEIGE+MGVSRERIRQIE+CAFRKLKNKKRTK LQQY++S
Sbjct: 536  RMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  541 bits (1394), Expect = e-151
 Identities = 308/576 (53%), Positives = 370/576 (64%), Gaps = 30/576 (5%)
 Frame = -3

Query: 1886 CLLPQFKCSPDTLSTHYRTHTNSLKVRE-PVCSRARCILXXXXXXXXXXXXXXTVVDVEK 1710
            CLLPQFKC PD+ S H+RT  +  K  + PV  + +C +                +DV K
Sbjct: 4    CLLPQFKCQPDSFSIHFRTSFSVSKQNKGPVFFQPQCAVTTSPALLTS------TLDVAK 57

Query: 1709 LGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXXXXXXXXXX 1530
            L LPS +  ++S  +DR  +Y G +GP T+  +   LA+E LL S               
Sbjct: 58   LRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVAL 117

Query: 1529 XXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQDEEHSIQFSQKD--------------- 1395
                      +D TL +     +  +  T  K+ +    QF++K+               
Sbjct: 118  ARAAVKVA--KDATLFKNSNNTNLLISSTADKRSKWD--QFTEKERAGILGHLAVSDTGI 173

Query: 1394 --------------SENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXAN 1257
                          S +LI    E++L E Q   S+ VRS RQTE             + 
Sbjct: 174  VSDKSTAPASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAKGLEKSASA 233

Query: 1256 VVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLLKLENL 1077
            +      +S RKKRV   EVD++DP                    E S GIQ LLKLE L
Sbjct: 234  IPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERL 293

Query: 1076 HRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAKNYQGA 897
              EL ERCG QPTF QWA AAGVDQK+LRKRINYG  CK+KM+KSNIRLVISIAKNYQGA
Sbjct: 294  QAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGA 353

Query: 896  GMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMV 717
            GMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IRLP HMV
Sbjct: 354  GMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMV 413

Query: 716  EATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNL 537
            EATYRV+EARK LY E GRHP NEE+AEATGLSMKRL AVLL+P+PPRSLDQKIG+NQNL
Sbjct: 414  EATYRVKEARKQLYTEKGRHPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNL 473

Query: 536  KPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIG 357
            KP EVI  P AET+ED+L KQFM++DL++VLDSL +RE QVIRWRFG++DGRM+TLQEIG
Sbjct: 474  KPSEVIADPEAETSEDILIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIG 533

Query: 356  ELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            ELMGVSRER+RQIE+ AFRKLKNKKR+  LQQYLV+
Sbjct: 534  ELMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLVA 569


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  538 bits (1387), Expect = e-150
 Identities = 304/577 (52%), Positives = 373/577 (64%), Gaps = 31/577 (5%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTH--------TNSLKVREPVCSRARCILXXXXXXXXXXXX 1737
            M CLLPQFKC PDT S     H        T+ L+ R+ VC R +C +            
Sbjct: 1    MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60

Query: 1736 XXTVVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXX 1557
               + DVEKL LP +E+++NS++A    +++  +G P +  F+  L  + L+ +      
Sbjct: 61   S--IFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIA 118

Query: 1556 XXXXXXXXXXXXXXXXXXAQDLTLM----------EQVRTIHHHLVGTKTKQDEEHSIQF 1407
                               +D  LM           ++     H  G +  ++E+     
Sbjct: 119  AAAAEAVALARAAAKLA--KDAALMAFNSQPTKPVSKLEGQSLHFSGAQLLENEQVGSMR 176

Query: 1406 SQKDSENLI-------------PTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXX 1266
            + + SEN +             PT +EL+L E++L  SI VRS RQ E            
Sbjct: 177  NFEGSENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARAAEKV 236

Query: 1265 XANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLLKL 1086
             +NVV     ++ RKKR ++ EVDYSDP                    E S GIQ LLKL
Sbjct: 237  ASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKL 296

Query: 1085 ENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAKNY 906
            E LH EL  R G  P+FVQWA AAG+DQ+TLR+R+N+G  CK+KM+KSN+RLVISIAKNY
Sbjct: 297  EKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNY 356

Query: 905  QGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPS 726
            QG+GMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP 
Sbjct: 357  QGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 725  HMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGIN 546
            HMVEATYRV+EARK L  ENG+ PNNEE+AEATGLSMKRLTAVL+TP+ PRSLDQKIG N
Sbjct: 417  HMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFN 476

Query: 545  QNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQ 366
             NLKP EVI  P AET EDLL KQFM+QDLE+VLD+L+SRE QVIRWRFGL+DGRM+TLQ
Sbjct: 477  MNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQ 536

Query: 365  EIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYL 255
            EIGELMGVSRERIRQIE+ AFRKL+NKK+T  LQQY+
Sbjct: 537  EIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573


>ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
            gi|462399411|gb|EMJ05079.1| hypothetical protein
            PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  531 bits (1368), Expect = e-148
 Identities = 276/401 (68%), Positives = 316/401 (78%)
 Frame = -3

Query: 1451 VGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXX 1272
            +G++T   E H IQ + K+SE++  T+ E +L   QL   I  RS RQ E          
Sbjct: 1    MGSETALVENHFIQVAIKESEDVESTNQEFELLREQLSEGITARSSRQIERKARRAKAAE 60

Query: 1271 XXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLL 1092
               A+VV     ++ RKKR +L +VD+SDP                    E SEGIQ+LL
Sbjct: 61   KAAASVVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELL 120

Query: 1091 KLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAK 912
            KLE L  EL +RCG QPT  QWA AAGVDQKTLRKRINYG+LCK+KM+KSNIRLVISIAK
Sbjct: 121  KLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAK 180

Query: 911  NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRL 732
            NYQGAGMNLQDLVQ+GCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRL
Sbjct: 181  NYQGAGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 240

Query: 731  PSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIG 552
            P HMVEATYRVREA+K LY  NGRHPN+EE+AEATGLSMKRL AVLLTP+ PRSL+QKIG
Sbjct: 241  PFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIG 300

Query: 551  INQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRT 372
            INQNLKP EVI  P AET ED+L K+FM+QDLE+VLDSLN+RE QV+RWRFGL+DGRM+T
Sbjct: 301  INQNLKPSEVIADPEAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKT 360

Query: 371  LQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            LQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY+VS
Sbjct: 361  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 401


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  531 bits (1367), Expect = e-148
 Identities = 290/520 (55%), Positives = 353/520 (67%), Gaps = 29/520 (5%)
 Frame = -3

Query: 1727 VVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNF--EATLATE-ALLPSXXXXXX 1557
            V  ++KL LPS EA+ +SV  DRP +Y G +GPP + N   E +LA+E A++ +      
Sbjct: 92   VPGIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSLASEEAIVAAAAAEAV 151

Query: 1556 XXXXXXXXXXXXXXXXXXAQDLTLMEQV-------------RTIH-------------HH 1455
                                +L   + V              ++H               
Sbjct: 152  ALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAE 211

Query: 1454 LVGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1275
            L G++ K       + +  DS++L P+ +EL++ + QL   I V+S RQTE         
Sbjct: 212  LNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQTERKARRAKAV 271

Query: 1274 XXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKL 1095
                ANVV     ++ RKKR ++ +VDYSDP                    E S GIQ L
Sbjct: 272  ERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDL 331

Query: 1094 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIA 915
            LKLE L  EL ERCG QPTF QWA AAGVDQ TLRKR+NYG+LCK+KM+KSN+RLVISIA
Sbjct: 332  LKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIA 391

Query: 914  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 735
            KNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSRTIR
Sbjct: 392  KNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 451

Query: 734  LPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 555
            LP HMVEATYRV+EARK L  ENGRHPN+ E+AEATGLSMKRL AV+LTP+ PRSLDQK+
Sbjct: 452  LPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKV 511

Query: 554  GINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 375
            G N++LKP EV+  P AET+E++L KQFM+QDLE+VLD+LN RE QV+RWRFGL+DGRM+
Sbjct: 512  GFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMK 571

Query: 374  TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYL 255
            TLQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY+
Sbjct: 572  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  530 bits (1365), Expect = e-147
 Identities = 278/401 (69%), Positives = 316/401 (78%)
 Frame = -3

Query: 1451 VGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXX 1272
            VG +T   + +S+Q   +DS++L PT +EL+L E +   SI VRS RQ E          
Sbjct: 175  VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAE 234

Query: 1271 XXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLL 1092
               A VV     ++ R+KRV+L EVDYSDP                    E SEGIQ LL
Sbjct: 235  KASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLL 294

Query: 1091 KLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAK 912
            KLE L  +L ER GV+PTF QWA AAGVDQKTLR+R NYG+ CK+KM+KSNIRLVISIAK
Sbjct: 295  KLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAK 354

Query: 911  NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRL 732
            NYQGAGMN+QDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRL
Sbjct: 355  NYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 414

Query: 731  PSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIG 552
            P HMVEATYRV+EARK LY ENGRHPNNEE+AEATGLSMKRL AVLLTP+ PRSLDQKIG
Sbjct: 415  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIG 474

Query: 551  INQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRT 372
            INQNLKP EVI  P AET E+LL KQFM++DLE+VL+SLN RE QVIRWR+GL+DGR +T
Sbjct: 475  INQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKT 534

Query: 371  LQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            LQEIGELMGVSRERIRQIE+CAFRKLKNK+RTK LQQYLVS
Sbjct: 535  LQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575



 Score =  105 bits (262), Expect = 8e-20
 Identities = 58/106 (54%), Positives = 68/106 (64%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVDVE 1713
            M CLLPQFKC PDT STH + H  S K RE +  R +C L               V+D+E
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILS-KNREAIYFRVQCALSTTSPPLSTSTTA--VLDIE 57

Query: 1712 KLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPS 1575
            KL LPSLE+H+NSV A RP +YIG +GPPT+ NFEATLA E LL S
Sbjct: 58   KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTS 103


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  530 bits (1365), Expect = e-147
 Identities = 278/401 (69%), Positives = 316/401 (78%)
 Frame = -3

Query: 1451 VGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXX 1272
            VG +T   + +S+Q   +DS++L PT +EL+L E +   SI VRS RQ E          
Sbjct: 178  VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAE 237

Query: 1271 XXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLL 1092
               A VV     ++ R+KRV+L EVDYSDP                    E SEGIQ LL
Sbjct: 238  KASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLL 297

Query: 1091 KLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIAK 912
            KLE L  +L ER GV+PTF QWA AAGVDQKTLR+R NYG+ CK+KM+KSNIRLVISIAK
Sbjct: 298  KLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAK 357

Query: 911  NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRL 732
            NYQGAGMN+QDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRL
Sbjct: 358  NYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 417

Query: 731  PSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIG 552
            P HMVEATYRV+EARK LY ENGRHPNNEE+AEATGLSMKRL AVLLTP+ PRSLDQKIG
Sbjct: 418  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIG 477

Query: 551  INQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRT 372
            INQNLKP EVI  P AET E+LL KQFM++DLE+VL+SLN RE QVIRWR+GL+DGR +T
Sbjct: 478  INQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKT 537

Query: 371  LQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            LQEIGELMGVSRERIRQIE+CAFRKLKNK+RTK LQQYLVS
Sbjct: 538  LQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578



 Score =  105 bits (261), Expect = 1e-19
 Identities = 58/108 (53%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
 Frame = -3

Query: 1892 MVCLLPQFKCSPDTLSTHYRTHT--NSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVD 1719
            M CLLPQFKC PDT STH + H    S K RE +  R +C L               V+D
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTA--VLD 58

Query: 1718 VEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPS 1575
            +EKL LPSLE+H+NSV A RP +YIG +GPPT+ NFEATLA E LL S
Sbjct: 59   IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTS 106


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  530 bits (1364), Expect = e-147
 Identities = 290/520 (55%), Positives = 352/520 (67%), Gaps = 29/520 (5%)
 Frame = -3

Query: 1727 VVDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNF--EATLATE-ALLPSXXXXXX 1557
            V D++KL LPS EA+ +SV  DRP +Y G +GPP + N   E +LA+E A++ +      
Sbjct: 92   VPDIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPENSLASEEAIVAAAAAEAV 151

Query: 1556 XXXXXXXXXXXXXXXXXXAQDLTLMEQV-------------RTIH-------------HH 1455
                                +L   + V              ++H               
Sbjct: 152  ALAKAALKGAQDAVMLVGYNNLNDSDNVGRGTLSEARTAPFESVHLAQPGETRRVGVCAE 211

Query: 1454 LVGTKTKQDEEHSIQFSQKDSENLIPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1275
            L G++ K       + +  DS++L P+ +EL++ + QL   I V+S RQTE         
Sbjct: 212  LNGSEMKWTGSSLFRETLTDSDDLEPSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSV 271

Query: 1274 XXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKL 1095
                ANVV     ++ RKKR ++ +VDYSDP                    E S GIQ L
Sbjct: 272  EKAAANVVTVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDL 331

Query: 1094 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIA 915
            LKLE L  EL ERCG QPTF QWA AAGVDQ TLRKR+NYG+LCK+KM+KSN+RLVISIA
Sbjct: 332  LKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIA 391

Query: 914  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 735
            KNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IR
Sbjct: 392  KNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR 451

Query: 734  LPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 555
            LP HMVEATYRV+EARK L  ENGRHPN+ E+AEA GLSMKRL AV+LTP+ PRSLDQKI
Sbjct: 452  LPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKI 511

Query: 554  GINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 375
            G N++LKP EV+  P AET+E++L KQFM+QDLE+VLD+LN RE QV+RWRFGL+DGRM+
Sbjct: 512  GFNESLKPSEVLADPEAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMK 571

Query: 374  TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYL 255
            TLQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY+
Sbjct: 572  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  526 bits (1356), Expect = e-146
 Identities = 295/554 (53%), Positives = 360/554 (64%), Gaps = 31/554 (5%)
 Frame = -3

Query: 1817 LKVREPVCSRARCILXXXXXXXXXXXXXXTVVDVEKLGLPSLEAHTNSVTADRPLSYIGP 1638
            ++ RE  C + +C+                VVDV+K+ +PSL  H+ SV+   PL+Y+G 
Sbjct: 26   VRTREATCFQTQCV----------SSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGT 75

Query: 1637 IGPPTKPNFEATLAT----------------EALLPSXXXXXXXXXXXXXXXXXXXXXXX 1506
            IG   K +FEA L T                EA+  +                       
Sbjct: 76   IGSQKKTDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSD 135

Query: 1505 XAQD--------------LTLMEQVRTIHHHLVGTKTKQDEEHSI-QFSQKDSENLIPTD 1371
               D              LT ME++ ++    +     +D+  S+ Q S  +  +    +
Sbjct: 136  KVDDFPSEADILRLQRARLTEMERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRE 195

Query: 1370 DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXANVVFGNPRTSRRKKRVALHEVDY 1191
            + L+  ++Q    + VRS RQTE             AN +     T+ R+KR  L E+DY
Sbjct: 196  NILEALQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDY 255

Query: 1190 SDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKLLKLENLHRELAERCGVQPTFVQWAEAAG 1011
            SDP                    E SEGIQ LLKLE LH+EL ER G +PTFVQWA AAG
Sbjct: 256  SDPLRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAG 315

Query: 1010 VDQKTLRKRINYGVLCKEKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKF 831
            +DQK LR+R++YG  CK+KM+KSNIRLVISIAKNYQG G+++QDLVQEGCRGLV+GAEKF
Sbjct: 316  IDQKALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKF 375

Query: 830  DASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMVEATYRVREARKLLYCENGRHPN 651
            DASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP HMV+ATYRVREA K LY ENGRHPN
Sbjct: 376  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPN 435

Query: 650  NEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNLKPLEVITYPGAETTEDLLNKQF 471
            +EE+AEATGLSMKRLT VLLTP+ PRSLDQKIGINQNLKP EVI+ P AET EDLL KQF
Sbjct: 436  DEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQF 495

Query: 470  MQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIGELMGVSRERIRQIETCAFRKLK 291
            M+QDLE+VL++LN RE QV+RWRFGL+DGRM+TLQEIGELMGVSRERIRQIE+ AFRKLK
Sbjct: 496  MKQDLEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 555

Query: 290  NKKRTKILQQYLVS 249
            NKKRTK L+QYL+S
Sbjct: 556  NKKRTKNLRQYLLS 569


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
            lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
            ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  526 bits (1354), Expect = e-146
 Identities = 302/582 (51%), Positives = 370/582 (63%), Gaps = 36/582 (6%)
 Frame = -3

Query: 1886 CLLPQFKCSPDTLSTHYRT------HTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTV 1725
            CLLPQFKC PD+ S H+RT      H       +P C+ +                  ++
Sbjct: 4    CLLPQFKCPPDSFSIHFRTSFCARKHNKGSVFFQPQCAVSTS-----------PALLTSM 52

Query: 1724 VDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXXXXX 1545
            +DV KL LPS +  ++S  +DR  +Y    GP T+  +   LA+E LL S          
Sbjct: 53   LDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112

Query: 1544 XXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQDEEHSIQFSQKD---------- 1395
                           +D TL +     +  +  T  K+ +    QF++K+          
Sbjct: 113  EAVALARAAVKVA--KDATLFKNSNNTNLLISSTADKRSKWD--QFTEKERAGILGHLAV 168

Query: 1394 SENLIPTD--------------------DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1275
            S+N I +D                    +E++L E Q   S+ VRS RQTE         
Sbjct: 169  SDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGL 228

Query: 1274 XXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKL 1095
                + +      ++ RKKR+   EVD++DP                    E S GIQ L
Sbjct: 229  EKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDL 288

Query: 1094 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIA 915
            LKLE L  EL ERCG QPTF QWA AAGVDQK+LRKRI++G LCK+KM+KSNIRLVISIA
Sbjct: 289  LKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIA 348

Query: 914  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 735
            KNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IR
Sbjct: 349  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR 408

Query: 734  LPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 555
            LP HMVEATYRV+EARK LY E G+HP NEEIAEATGLSMKRL AVLL+P+PPRSLDQKI
Sbjct: 409  LPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKI 468

Query: 554  GINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 375
            G+NQNLKP EVI  P A T+ED+L K+FM+QDL++VLDSL +RE QVIRWRFG++DGRM+
Sbjct: 469  GMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMK 528

Query: 374  TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            TLQEIGE+MGVSRER+RQIE+ AFRKLKNKKR+  LQQYLV+
Sbjct: 529  TLQEIGEMMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLVA 570


>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
            gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
            polymerase sigma factor sigB; Short=Sigma factor B;
            Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
            1; AltName: Full=RNA polymerase sigma factor sig1;
            Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
            polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
            factor 2; AltName: Full=RNA polymerase sigma factor sigA;
            Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
            gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
            [Arabidopsis thaliana]
            gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
            thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
            thaliana] gi|2597831|emb|CAA75584.1| sigma factor
            [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
            RNA polymerase sigma-subunit [Arabidopsis thaliana]
            gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
            thaliana] gi|133778838|gb|ABO38759.1| At1g08540
            [Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
            polymerase sigma subunit 2 [Arabidopsis thaliana]
          Length = 572

 Score =  525 bits (1351), Expect = e-146
 Identities = 301/582 (51%), Positives = 369/582 (63%), Gaps = 36/582 (6%)
 Frame = -3

Query: 1886 CLLPQFKCSPDTLSTHYRT------HTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTV 1725
            CLLPQFKC PD+ S H+RT      H       +P C+ +                  ++
Sbjct: 4    CLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTS-----------PALLTSM 52

Query: 1724 VDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXXXXX 1545
            +DV KL LPS +  ++S+ +DR  +Y  P GP T+  +   LA+E LL S          
Sbjct: 53   LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112

Query: 1544 XXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQDEEHSIQFSQKD---------- 1395
                           +D TL +     +  L+ + T        QF++K+          
Sbjct: 113  EAVALARAAVKVA--KDATLFKNSNNTN--LLTSSTADKRSKWDQFTEKERAGILGHLAV 168

Query: 1394 SENLIPTD--------------------DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1275
            S+N I +D                    +E++L E Q   S+ VRS RQTE         
Sbjct: 169  SDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGL 228

Query: 1274 XXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKL 1095
                + +      +S +KKR+   EVD++DP                    E S GIQ L
Sbjct: 229  EKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDL 288

Query: 1094 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIA 915
            LKLE L  EL ER G QPTF QWA AAGVDQK+LR+RI++G LCK+KM+KSNIRLVISIA
Sbjct: 289  LKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIA 348

Query: 914  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 735
            KNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IR
Sbjct: 349  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR 408

Query: 734  LPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 555
            LP HMVEATYRV+EARK LY E G+HP NEEIAEATGLSMKRL AVLL+P+PPRSLDQKI
Sbjct: 409  LPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKI 468

Query: 554  GINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 375
            G+NQNLKP EVI  P A T+ED+L K+FM+QDL++VLDSL +RE QVIRWRFG++DGRM+
Sbjct: 469  GMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMK 528

Query: 374  TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            TLQEIGE+MGVSRER+RQIE+ AFRKLKNKKR   LQQYLV+
Sbjct: 529  TLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570


>dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
            thaliana]
          Length = 572

 Score =  523 bits (1346), Expect = e-145
 Identities = 300/582 (51%), Positives = 368/582 (63%), Gaps = 36/582 (6%)
 Frame = -3

Query: 1886 CLLPQFKCSPDTLSTHYRT------HTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTV 1725
            CLLPQFKC PD+ S H+RT      H       +P C+ +                  ++
Sbjct: 4    CLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTS-----------PALLTSM 52

Query: 1724 VDVEKLGLPSLEAHTNSVTADRPLSYIGPIGPPTKPNFEATLATEALLPSXXXXXXXXXX 1545
            +DV KL LPS +  ++S+ +DR  +Y  P GP T+  +   LA+E LL S          
Sbjct: 53   LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112

Query: 1544 XXXXXXXXXXXXXXAQDLTLMEQVRTIHHHLVGTKTKQDEEHSIQFSQKD---------- 1395
                           +D TL +     + +L+ + T        QF++K+          
Sbjct: 113  EAVALARAAVKVA--KDATLFKNSN--YTNLLTSSTADKRSKWDQFTEKERAGILGHLAV 168

Query: 1394 SENLIPTD--------------------DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1275
            S+N I +D                    +E++L E Q    + VRS RQTE         
Sbjct: 169  SDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVGLAVRSTRQTERKARRAKGL 228

Query: 1274 XXXXANVVFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQKL 1095
                + +      +S +KKR+   EVD++DP                    E S GIQ L
Sbjct: 229  EKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDL 288

Query: 1094 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKRINYGVLCKEKMVKSNIRLVISIA 915
            LKLE L  EL ER G QPTF QWA AAGVDQK+LR+RI++G LCK+KM+KSNIRLVISIA
Sbjct: 289  LKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIA 348

Query: 914  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 735
            KNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IR
Sbjct: 349  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR 408

Query: 734  LPSHMVEATYRVREARKLLYCENGRHPNNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 555
            LP HMVEATYRV+EARK LY E G+HP NEEIAEATGLSMKRL AVLL+P+PPRSLDQKI
Sbjct: 409  LPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKI 468

Query: 554  GINQNLKPLEVITYPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 375
            G+NQNLKP EVI  P A T ED+L K+FM+QDL++VLDSL +RE QVIRWRFG++DGRM+
Sbjct: 469  GMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMK 528

Query: 374  TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 249
            TLQEIGE+MGVSRER+RQIE+ AFRKLKNKKR   LQQYLV+
Sbjct: 529  TLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570