BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00029834
         (723 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   371   e-100
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              371   e-100
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   365   1e-98
ref|XP_006436405.1| hypothetical protein CICLE_v10031422mg [Citr...   365   1e-98
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   364   1e-98
ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mit...   363   2e-98
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   363   2e-98
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   363   2e-98
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   362   9e-98
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   358   1e-96
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   356   5e-96
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   354   1e-95
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           354   2e-95
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           353   4e-95
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   352   1e-94
gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial...   351   2e-94
dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]        351   2e-94
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   351   2e-94
gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus...   350   2e-94
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob...   350   2e-94

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  371 bits (952), Expect = e-100
 Identities = 177/220 (80%), Positives = 196/220 (89%), Gaps = 3/220 (1%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           KAKS SK W+DACEA  Q YWALVIGSP +K+GVIHAPLSKV+L+DGKTERVI+A+ S +
Sbjct: 260 KAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGL 319

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ+AITEYRVLGP INGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 320 EASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 379

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVD+EP TGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKF  +LD 
Sbjct: 380 WKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDP 439

Query: 545 QP---DKHPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           +P   +++PKLS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 440 KPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  371 bits (952), Expect = e-100
 Identities = 177/220 (80%), Positives = 196/220 (89%), Gaps = 3/220 (1%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           KAKS SK W+DACEA  Q YWALVIGSP +K+GVIHAPLSKV+L+DGKTERVI+A+ S +
Sbjct: 262 KAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGL 321

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ+AITEYRVLGP INGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 322 EASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 381

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVD+EP TGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKF  +LD 
Sbjct: 382 WKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDP 441

Query: 545 QP---DKHPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           +P   +++PKLS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 442 KPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  365 bits (936), Expect = 1e-98
 Identities = 176/221 (79%), Positives = 194/221 (87%), Gaps = 4/221 (1%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           K+KS SK WNDACEA  Q YWALVIGSP EKQG+IHAPLSKV+L+DGKTER+I+A  S +
Sbjct: 251 KSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGL 310

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ+A+TEYRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 311 EASQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 370

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVDIEP +GKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL+LPNIAKFR VL+ 
Sbjct: 371 WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQ 430

Query: 545 QPDK-HPKLSSK---PDVLRFVAPMPSHMKISWNLMSSYLV 655
           + D   P LSSK   PD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 431 KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006436405.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538601|gb|ESR49645.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 343

 Score =  365 bits (936), Expect = 1e-98
 Identities = 176/221 (79%), Positives = 194/221 (87%), Gaps = 4/221 (1%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           K+KS SK WNDACEA  Q YWALVIGSP EKQG+IHAPLSKV+L+DGKTER+I+A  S +
Sbjct: 123 KSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGL 182

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ+A+TEYRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 183 EASQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 242

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVDIEP +GKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL+LPNIAKFR VL+ 
Sbjct: 243 WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQ 302

Query: 545 QPDK-HPKLSSK---PDVLRFVAPMPSHMKISWNLMSSYLV 655
           + D   P LSSK   PD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 303 KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 343


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
           gi|561034434|gb|ESW32964.1| hypothetical protein
           PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  364 bits (935), Expect = 1e-98
 Identities = 169/217 (77%), Positives = 194/217 (89%), Gaps = 1/217 (0%)
 Frame = +2

Query: 8   AKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIE 187
           AKSS K WNDACEA  Q YWALVIG+P EK+G+IHAPLSKV+LNDGKTER+I+A+ SS+E
Sbjct: 264 AKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILANHSSVE 323

Query: 188 VSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKW 367
             Q+A+TE+RVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+W
Sbjct: 324 PRQEAVTEFRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRW 383

Query: 368 KHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQ 547
           K MPR+DIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCREL+LPNIAKF +VL+  
Sbjct: 384 KQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLNNS 443

Query: 548 PDK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            ++ H  L+ +P+VLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 444 SEELHSSLNQQPEVLRFVATMPSHMRISWNLMSSYLV 480


>ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X2 [Glycine max]
          Length = 449

 Score =  363 bits (933), Expect = 2e-98
 Identities = 170/217 (78%), Positives = 191/217 (88%), Gaps = 1/217 (0%)
 Frame = +2

Query: 8   AKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIE 187
           AKSS K WN+ACEA  Q YWALVIG+P EK+G+IHAPLSKV+LNDGKTER+I+AH SS+E
Sbjct: 233 AKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVE 292

Query: 188 VSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKW 367
             Q+A+TEYRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+W
Sbjct: 293 PRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRW 352

Query: 368 KHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQ 547
           K MPRVDIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCREL+LPNI KF +VL+  
Sbjct: 353 KQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNS 412

Query: 548 PDK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            ++    L  +PDVLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 413 SEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 449


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  363 bits (933), Expect = 2e-98
 Identities = 170/217 (78%), Positives = 191/217 (88%), Gaps = 1/217 (0%)
 Frame = +2

Query: 8   AKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIE 187
           AKSS K WN+ACEA  Q YWALVIG+P EK+G+IHAPLSKV+LNDGKTER+I+AH SS+E
Sbjct: 260 AKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVE 319

Query: 188 VSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKW 367
             Q+A+TEYRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+W
Sbjct: 320 PRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRW 379

Query: 368 KHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQ 547
           K MPRVDIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCREL+LPNI KF +VL+  
Sbjct: 380 KQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNS 439

Query: 548 PDK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            ++    L  +PDVLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 440 SEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 476


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  363 bits (933), Expect = 2e-98
 Identities = 173/216 (80%), Positives = 190/216 (87%), Gaps = 1/216 (0%)
 Frame = +2

Query: 11  KSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIEV 190
           KSS K WNDACE+  Q YWALVIG+P EK+G+IHAPLSKV+LNDGKTERVI+AH SSIE 
Sbjct: 264 KSSCKAWNDACESTYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHESSIEP 323

Query: 191 SQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWK 370
            Q+A+TEYRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+WK
Sbjct: 324 HQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWK 383

Query: 371 HMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQP 550
            MPRVDIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCREL LPNIAKF  VL+   
Sbjct: 384 QMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELALPNIAKFLNVLEKSS 443

Query: 551 DK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            +  P LS +PDVLRFVA MP+HM+ISWNLMSSYLV
Sbjct: 444 QQLDPSLSLQPDVLRFVATMPNHMRISWNLMSSYLV 479


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
           gi|462405724|gb|EMJ11188.1| hypothetical protein
           PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  362 bits (928), Expect = 9e-98
 Identities = 171/218 (78%), Positives = 191/218 (87%), Gaps = 1/218 (0%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           K KSS + W+DACEAR Q YWALVIGSP EK+G+I APLSKV+L++GKTERVI+AH S +
Sbjct: 254 KGKSSCQAWDDACEARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTERVILAHQSGL 313

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ AIT+YRVLGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 314 EASQKAITQYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 373

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MP VD+EP +G PYK+RRP GLDVQKGSVLSKVPLLHLHCREL+LPNIAKF  +LD 
Sbjct: 374 WKQMPHVDVEPTSGLPYKLRRPAGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLLILDQ 433

Query: 545 QPDK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           + D  HP +SSKPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 434 KLDSLHPAVSSKPDILRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  358 bits (918), Expect = 1e-96
 Identities = 174/221 (78%), Positives = 192/221 (86%), Gaps = 4/221 (1%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           K+KS SK WNDACEA  Q YWALVIGSP EKQG+I APLSKV+L+DGKTER+I+A  S +
Sbjct: 251 KSKSLSKAWNDACEAMYQRYWALVIGSPREKQGIIRAPLSKVLLDDGKTERIILAQNSGL 310

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ+A+TEYRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 311 EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 370

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVDIEP +GKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL+LPNIAKF  VL+ 
Sbjct: 371 WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFINVLNQ 430

Query: 545 QPDK-HPKLSSK---PDVLRFVAPMPSHMKISWNLMSSYLV 655
           + D   P LSSK   PD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 431 KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  356 bits (913), Expect = 5e-96
 Identities = 167/218 (76%), Positives = 192/218 (88%), Gaps = 1/218 (0%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           KA+S    WNDACEA  Q YWALVIGSP +K+G+I A LSKV+L+DGKTERV++A  SS+
Sbjct: 245 KAQSKCHAWNDACEATYQRYWALVIGSPKDKEGLISARLSKVLLDDGKTERVVLAQHSSL 304

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E S+DA+TEYRVLGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +
Sbjct: 305 EPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 364

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVDIEP +GKPYK+R PEG+D+QKGSVL+KVPLLHLHCREL+LPNIAKF  VLDG
Sbjct: 365 WKQMPRVDIEPSSGKPYKLRWPEGVDIQKGSVLAKVPLLHLHCRELVLPNIAKFLDVLDG 424

Query: 545 QPDK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           + +  HP LS++PD+LRFVA MPSHMKISWNLMSS+LV
Sbjct: 425 KSENVHPALSTRPDLLRFVASMPSHMKISWNLMSSFLV 462


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  354 bits (909), Expect = 1e-95
 Identities = 167/218 (76%), Positives = 187/218 (85%), Gaps = 1/218 (0%)
 Frame = +2

Query: 5   KAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSI 184
           K+ S  K WNDAC+A  Q YWALVIGSP EK+G+I APLSKV+LNDGKTERV++A  S +
Sbjct: 251 KSNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGL 310

Query: 185 EVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSK 364
           E SQ+A+TEYRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW VH +
Sbjct: 311 EASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQR 370

Query: 365 WKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDG 544
           WK MPRVDIEP +GKPYK+RRP GLDVQKGSVLSKVPLLHLHCRE +LPNIAKF  VL+ 
Sbjct: 371 WKQMPRVDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNE 430

Query: 545 QPDK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           + +  HP L +KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 431 KSENIHPALDAKPDLLRFVASMPTHMKISWNLMSSYLV 468


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  354 bits (908), Expect = 2e-95
 Identities = 167/215 (77%), Positives = 188/215 (87%), Gaps = 1/215 (0%)
 Frame = +2

Query: 14  SSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIEVS 193
           S+ K WNDACEA+ Q YWALVIGSP EK+G+I APLSKV+LNDGKTERVI+AH +  + S
Sbjct: 235 SNIKAWNDACEAKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQAS 294

Query: 194 QDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKH 373
           Q+AITEYRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WK 
Sbjct: 295 QEAITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQ 354

Query: 374 MPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQ-P 550
           MP+V+IEP TGKPYK+RRPEGLDVQKGSV+SKVPLLHL CREL+LPNIAKF  V D +  
Sbjct: 355 MPQVNIEPTTGKPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSQ 414

Query: 551 DKHPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           ++ P L SKPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 415 NQDPALESKPDLLRFVARMPSHMKISWNLMSSYLV 449


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  353 bits (905), Expect = 4e-95
 Identities = 167/215 (77%), Positives = 187/215 (86%), Gaps = 1/215 (0%)
 Frame = +2

Query: 14  SSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIEVS 193
           S+ K WNDACEA+ Q YWALVIGSP EK+G+I APLSKV+LNDGKTERVI+AH +  + S
Sbjct: 235 SNIKAWNDACEAKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQAS 294

Query: 194 QDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKH 373
           Q+AITEYRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW VH +WK 
Sbjct: 295 QEAITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWLVHKRWKQ 354

Query: 374 MPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQPD 553
           MP+V+IEP TGKPYK+RRPEGLDVQKGSV+SKVPLLHL CREL+LPNIAKF  V D + +
Sbjct: 355 MPQVNIEPTTGKPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSE 414

Query: 554 -KHPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            + P L SKPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 415 NQDPALESKPDLLRFVARMPSHMKISWNLMSSYLV 449


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
           gi|557086377|gb|ESQ27229.1| hypothetical protein
           EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  352 bits (902), Expect = 1e-94
 Identities = 165/220 (75%), Positives = 187/220 (85%), Gaps = 2/220 (0%)
 Frame = +2

Query: 2   KKAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSS 181
           K   S  K WN ACEA  Q YWALVIGSP +K+GVI AP+SKV+L+DGKT+RV++A  S 
Sbjct: 259 KGRDSRCKAWNKACEAMYQQYWALVIGSPKDKEGVISAPISKVLLDDGKTDRVVLARGSG 318

Query: 182 IEVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHS 361
            E SQ+AITEYRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH 
Sbjct: 319 FEASQEAITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHK 378

Query: 362 KWKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLD 541
           KWK MP+VDIEP +GKPYK+RRPEGLD+QKGSVLSKVPLLHLHCRE++LPNIAKF +VL+
Sbjct: 379 KWKQMPQVDIEPTSGKPYKLRRPEGLDIQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLN 438

Query: 542 GQ--PDKHPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            Q     HP + SKPD+LRFVA MPSHMKISWN+MSSYLV
Sbjct: 439 NQEIDSLHPGIISKPDLLRFVASMPSHMKISWNIMSSYLV 478


>gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial [Mimulus
           guttatus]
          Length = 452

 Score =  351 bits (900), Expect = 2e-94
 Identities = 166/221 (75%), Positives = 189/221 (85%), Gaps = 3/221 (1%)
 Frame = +2

Query: 2   KKAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSS 181
           +KA S SK W+DAC+A  Q YWALVIG PN+K+GVI APL+KV+LNDGKTE VI++H S 
Sbjct: 232 RKAASFSKEWSDACDAMYQRYWALVIGVPNQKEGVIFAPLTKVLLNDGKTEMVILSHNSG 291

Query: 182 IEVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHS 361
           +E SQ+AIT YRVLGP INGCSWIELHPLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS
Sbjct: 292 LEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAEALGTPIVGDYKYGWFVHS 351

Query: 362 KWKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLD 541
           KWK MPR++ EP TG+PYKMRRPEGLDVQKGSVLSKVPLLHLH RE++LPNI KF  +  
Sbjct: 352 KWKQMPRLNFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHLHSREMVLPNIEKFIELHK 411

Query: 542 GQPDKH---PKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            +P  +   P+L +KPD+LRFVAPMP HMKISWNLMSSYLV
Sbjct: 412 QKPGNYNVDPELCAKPDILRFVAPMPKHMKISWNLMSSYLV 452


>dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
          Length = 326

 Score =  351 bits (900), Expect = 2e-94
 Identities = 165/220 (75%), Positives = 187/220 (85%), Gaps = 2/220 (0%)
 Frame = +2

Query: 2   KKAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSS 181
           K   SS K WN ACEA  Q YWALVIGSP EK+G+I APLSKV+L+DGKT+RV++A  S 
Sbjct: 107 KGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSG 166

Query: 182 IEVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHS 361
            E SQDAITEY+VLGP INGCSW+EL P+T RKHQLRVHCAEALGTPIVGDYKYGW+VH 
Sbjct: 167 FEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHK 226

Query: 362 KWKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLD 541
           +WK MP+VDIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCRE++LPNIAKF +V++
Sbjct: 227 RWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMN 286

Query: 542 GQPDK--HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            Q  +  H  +  KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 287 QQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 326


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  351 bits (900), Expect = 2e-94
 Identities = 165/220 (75%), Positives = 187/220 (85%), Gaps = 2/220 (0%)
 Frame = +2

Query: 2   KKAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSS 181
           K   SS K WN ACEA  Q YWALVIGSP EK+G+I APLSKV+L+DGKT+RV++A  S 
Sbjct: 259 KGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSG 318

Query: 182 IEVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHS 361
            E SQDAITEY+VLGP INGCSW+EL P+T RKHQLRVHCAEALGTPIVGDYKYGW+VH 
Sbjct: 319 FEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHK 378

Query: 362 KWKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLD 541
           +WK MP+VDIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCRE++LPNIAKF +V++
Sbjct: 379 RWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMN 438

Query: 542 GQPDK--HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            Q  +  H  +  KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 439 QQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478


>gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus guttatus]
          Length = 460

 Score =  350 bits (899), Expect = 2e-94
 Identities = 166/221 (75%), Positives = 188/221 (85%), Gaps = 3/221 (1%)
 Frame = +2

Query: 2   KKAKSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSS 181
           +KA S SK W+DAC+A  Q YWALVIG PN+K+GVI APL+KV+LNDGKTE VI++H S 
Sbjct: 240 RKAASFSKEWSDACDAMYQRYWALVIGVPNQKEGVICAPLTKVLLNDGKTEMVILSHNSG 299

Query: 182 IEVSQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHS 361
           +E SQ+AIT YRVLGP INGCSWIELHPLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS
Sbjct: 300 LEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAEALGTPIVGDYKYGWFVHS 359

Query: 362 KWKHMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYV-- 535
           KWK MPR+D EP TG+PYKMRRPEGLDVQKGSVLSKVPLLHLH RE++LPNI KF  +  
Sbjct: 360 KWKQMPRLDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHLHSREMVLPNIEKFIELHK 419

Query: 536 -LDGQPDKHPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
            + G  +  P+L +KPD+LRFV PMP HMKISWNLMSSYLV
Sbjct: 420 HMSGNYNVDPELCAKPDILRFVVPMPKHMKISWNLMSSYLV 460


>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
           gi|508779021|gb|EOY26277.1| Pseudouridine synthase
           family protein [Theobroma cacao]
          Length = 471

 Score =  350 bits (899), Expect = 2e-94
 Identities = 167/216 (77%), Positives = 186/216 (86%), Gaps = 1/216 (0%)
 Frame = +2

Query: 11  KSSSKTWNDACEARAQTYWALVIGSPNEKQGVIHAPLSKVVLNDGKTERVIIAHPSSIEV 190
           KSS K WNDAC+ + Q +WALVIG+P EK+G+I APLSK++L+DGKTERVI+A    +E 
Sbjct: 256 KSSCKAWNDACDVKYQRFWALVIGTPKEKEGLICAPLSKILLDDGKTERVILAQNVGLEA 315

Query: 191 SQDAITEYRVLGPTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWK 370
           SQ+AITEYRVLGP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WK
Sbjct: 316 SQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 375

Query: 371 HMPRVDIEPMTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFRYVLDGQP 550
            MPRVDIEP TGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCREL+LPNIAKF  VL+   
Sbjct: 376 QMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLPVLNKNT 435

Query: 551 DK-HPKLSSKPDVLRFVAPMPSHMKISWNLMSSYLV 655
           +   P LS KPD+LRFVA MP HMKISWNLMSSYLV
Sbjct: 436 ETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYLV 471