BLASTX nr result

ID: Akebia25_contig00026658 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00026658
         (341 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
ref|XP_006480111.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07
ref|XP_002320353.2| hypothetical protein POPTR_0014s12660g [Popu...    57   3e-06

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 38/98 (38%), Positives = 41/98 (41%)
 Frame = +3

Query: 3   MRPFPEFNNIGNKILHLINTCTSPTXXXXXXXXXXXXXXXXXXXXXXXXXXACQSXXXXX 182
           MRPFP  N    K L+L+  C SP                           ACQS     
Sbjct: 1   MRPFPRLNPRVTKFLNLLTNCCSPCHIHQIQAQLIVQNLHSNTTIAHHFITACQSLGLLD 60

Query: 183 XXXXXFNQIHRPHVFICNSLIRAFSHTQHSKTSFSIYT 296
                F    +PHVFICNSLIRAFSH     T FSIYT
Sbjct: 61  SALLLFTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYT 98


>ref|XP_006480111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Citrus sinensis]
          Length = 466

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 15  PEFNN-IGNKILHLINTCTSPTXXXXXXXXXXXXXXXXXXXXXXXXXXACQSXXXXXXXX 191
           P+ N+    +I++ + TCTSP+                          ACQS        
Sbjct: 6   PQLNSPAAERIIYFLTTCTSPSHIHQIQAQLILQNFHCNATVASYFITACQSLNLLNTAH 65

Query: 192 XXFNQIHRPHVFICNSLIRAFSHTQHSKTSFSIYT 296
             F+Q+H PHVF CNSLI+AFSH+Q     +SIYT
Sbjct: 66  LLFHQLHVPHVFACNSLIKAFSHSQIPHIPYSIYT 100


>ref|XP_002320353.2| hypothetical protein POPTR_0014s12660g [Populus trichocarpa]
           gi|550324072|gb|EEE98668.2| hypothetical protein
           POPTR_0014s12660g [Populus trichocarpa]
          Length = 410

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +3

Query: 3   MRPFPEFNNIGNKILHLINTCTSPTXXXXXXXXXXXXXXXXXXXXXXXXXXACQS-XXXX 179
           MR F E + + NKI++L+N C SPT                          A Q+     
Sbjct: 1   MRTFQELSPMINKIINLLNKCASPTHIHQIQSQIILHHLHSNTTLAYHFITASQNFSLLR 60

Query: 180 XXXXXXFNQIHRPHVFICNSLIRAFSHTQHSKTSFSIY 293
                 F  +HRPHVFICN+LIRAFS        +SIY
Sbjct: 61  SSLPLFFTHLHRPHVFICNTLIRAFSRIHDPHIPYSIY 98


Top