BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00024730
         (2018 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              440   0.0  
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     387   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         372   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  372   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  372   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   369   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   374   0.0  
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       366   0.0  
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   367   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   368   0.0  
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   363   0.0  
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   326   0.0  
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   326   0.0  
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]   324   0.0  
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 329   0.0  
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]   361   0.0  
emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera]   357   0.0  
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...   286   0.0  
ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [The...   286   0.0  
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594...   382   0.0  

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  440 bits (1132), Expect(4) = 0.0
 Identities = 202/281 (71%), Positives = 245/281 (87%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +K+  I+EWPSP +V  VRSFHGLA FYRRFVKDF+++AAP+TEVIKKN GFKW + QE 
Sbjct: 1123 EKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQED 1182

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AFQ +K+KLTHAP+L+LP+F KTFEIE DASG+GI +VLMQ+ +P+AYFSEKL GA LNY
Sbjct: 1183 AFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNY 1242

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
            PTYDKE+YALVR+L+T QHYLWPKEFVIH DHESLKHL+GQ KLNK  ARWVEF ETFPY
Sbjct: 1243 PTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPY 1302

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE 961
            VI+YK+GK+N+VADALSRRY+L+S+L AK+LGFEHIK LY  D DF + Y SCE+ A G+
Sbjct: 1303 VIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGK 1362

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGVA 838
            Y+RH+GFLF +N+LCIPN S+R+L +RE+HGGGLMGHFGV+
Sbjct: 1363 YYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVS 1403



 Score =  327 bits (839), Expect(4) = 0.0
 Identities = 152/204 (74%), Positives = 179/204 (87%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F RE+VRLHGMP+TIVSDRD KFLSYFWK LW KLGTKLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1505 FFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 1564

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            STLLRA+IKKN+KTWE+CLPHVEFAYN ++HSA+KF PF+IVY FNP TPLDL PLP+SE
Sbjct: 1565 STLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSE 1624

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             ++LDGKKKAE V+QIHE+A+ NIE +T QYAK ANK R +++F   D VW+H+RKERFP
Sbjct: 1625 RVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFP 1684

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
             +R+SKL+ R DGPF+VL+ IN+N
Sbjct: 1685 KERKSKLMSRIDGPFKVLKRINNN 1708



 Score =  183 bits (464), Expect(4) = 0.0
 Identities = 87/114 (76%), Positives = 101/114 (88%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MKEGDEWKT FKT  GLYE LVMPFGL NAPSTFMRLMNHVLRAFI  FV++YFDDIL+Y
Sbjct: 1010 MKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVY 1069

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEE 1676
            S++L++H+ HLK+VL+VLRKEKL+ANLKKCTF T+  VFLGFV ST G++VDEE
Sbjct: 1070 SKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKVDEE 1123



 Score =  127 bits (319), Expect(4) = 0.0
 Identities = 55/79 (69%), Positives = 68/79 (86%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC+QAK++  PHGLYTPLPIPS PW DISMDF++GLPR++ G+DS+FVV+DRFSKMAH
Sbjct: 1429 CPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAH 1488

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA H+A+L  R
Sbjct: 1489 FIPCHKTDDAIHIANLFFR 1507


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  387 bits (993), Expect(4) = 0.0
 Identities = 181/279 (64%), Positives = 223/279 (79%), Gaps = 1/279 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I++WP+P NVS V+SF GLA FYRRFV+ F++IAAP+ E+ KK   F+WGE QEKA
Sbjct: 935  KVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEPQEKA 994

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            FQ +K++L+  PLL LP+F KTFE+E DASG+GI  VLMQ G+P+AYFSEKL GA LNY 
Sbjct: 995  FQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQLNYS 1054

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
             YDKE+YALVR+LETWQHYLWPKEFVIH DHE+LK+L+GQ KLN+  A+WVEF ETFPYV
Sbjct: 1055 VYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYV 1114

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE- 961
            ++YK+GKENIVADALSR+ +L++ L  K+ G E IKELY  D DF+E Y  C      E 
Sbjct: 1115 VKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEK 1174

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 844
            Y  H+GFLFR NKLC+P+CSVR LL++E+H GGLMGHFG
Sbjct: 1175 YHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFG 1213



 Score =  304 bits (778), Expect(4) = 0.0
 Identities = 140/204 (68%), Positives = 166/204 (81%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F  EIVRLHGMP+TIVSDRD KFLSYFWK LW KLGT+LLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1317 FFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTL 1376

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            S LLRA+IKKN+K WEECLPHVEFAYN  +HS T   PFE+VY F PL+P+DL PLP+ E
Sbjct: 1377 SMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQE 1436

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
              +++  K+A +VK+IHEK +  IE+R+  YA  ANK R K+ FE  D VW+H+RK+RFP
Sbjct: 1437 RSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFP 1496

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
             +R+SKL+PRGDGPF+VL  INDN
Sbjct: 1497 QKRKSKLMPRGDGPFRVLSKINDN 1520



 Score =  181 bits (460), Expect(4) = 0.0
 Identities = 87/113 (76%), Positives = 100/113 (88%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMNHVLRAFI  FVV+YFDDILIY
Sbjct: 821  MKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIY 880

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S+ L++H+ H++ VLDVLRKE+L+ANL+KCTFCT++ VFLGFV S  GIQVDE
Sbjct: 881  SKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQVDE 933



 Score =  136 bits (343), Expect(4) = 0.0
 Identities = 59/76 (77%), Positives = 69/76 (90%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            CVTC +AKS++ PHGLYTPLP+PS PW DISMDF+LGLPR+KRGRDS+FVV+DRFSKMAH
Sbjct: 1241 CVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAH 1300

Query: 658  FIPCHNMNDASHVADL 611
            FIPCH  +DASH+A L
Sbjct: 1301 FIPCHKSDDASHIASL 1316


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  372 bits (954), Expect(4) = 0.0
 Identities = 178/279 (63%), Positives = 218/279 (78%), Gaps = 1/279 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I  WP P  ++ VRSF GLA FYRRFVKDF++IAAP+ E+ KK   F WG+ QE A
Sbjct: 935  KVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHA 994

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F ++K KLTHAPLL LP+F KTFE+E DASG+G+  VL+QEG+P+AYFSEKLSG+ LNY 
Sbjct: 995  FNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYS 1054

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH+R Q KLN+  A+WVEF E+FPYV
Sbjct: 1055 TYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYV 1114

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKENI+ADALSRRY L++ L  KI G E IK+ Y  D DF +    C++     +
Sbjct: 1115 IKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNK 1174

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 844
            Y   +GF+FR NKLCIP  SVR LL++E+HGGGLMGHFG
Sbjct: 1175 YIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1213



 Score =  295 bits (756), Expect(4) = 0.0
 Identities = 139/204 (68%), Positives = 164/204 (80%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P TIVSDRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1317 FFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1376

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++KKNIK WE+CLPH+EFAYN ++HS TK  PF+IVY   P  P+DL PLP SE
Sbjct: 1377 STMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSE 1436

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             LN D  ++AE + ++HE  + NIER   +Y   ++KGR +I FE  D VWLH+RKERFP
Sbjct: 1437 KLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFP 1496

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKLLPR DGPF+VLE INDN
Sbjct: 1497 ELRKSKLLPRADGPFKVLEKINDN 1520



 Score =  166 bits (421), Expect(4) = 0.0
 Identities = 77/113 (68%), Positives = 95/113 (84%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 821  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIY 880

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S+++D+H+ H++ V + LR  +LF NL+KCTFCT++  FLG+V + QGI+VD+
Sbjct: 881  SKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQ 933



 Score =  133 bits (334), Expect(4) = 0.0
 Identities = 57/79 (72%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+++GRDSVFVV+DRFSKMAH
Sbjct: 1241 CTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAH 1300

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA+H+ADL  R
Sbjct: 1301 FIPCHKTDDATHIADLFFR 1319


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  372 bits (956), Expect(4) = 0.0
 Identities = 175/280 (62%), Positives = 221/280 (78%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            KI  I+ WP P  V+ VRSF G A FYRRFV+DF++IAAP+ E+ KK+  + WG  QE+A
Sbjct: 991  KIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEA 1050

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F ++K KLTHAPLL LP+F KTFE+E DASG+G+  VL+Q+G+P+AYFSEKLSG +LNY 
Sbjct: 1051 FTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYS 1110

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH++ Q KLN+  A+WVEF ETFPYV
Sbjct: 1111 TYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYV 1170

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GK+N++ADALSRRY ++S L  KI G E IK+ Y  D DF +  E+C E     +
Sbjct: 1171 IKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNK 1230

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +  + GF+FR NKLCIP  S+R LL++E+HGGGLMGHFGV
Sbjct: 1231 FIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGV 1270



 Score =  290 bits (742), Expect(4) = 0.0
 Identities = 134/204 (65%), Positives = 162/204 (79%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REI+RLHG+P TIVSDRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNR+L
Sbjct: 1373 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1432

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++K NIK WEECLPH+EFAYN ++HS TK  PFEIVY F P  P+DL P+P SE
Sbjct: 1433 STMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSE 1492

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K++AE + ++HE  + NIER   +Y    +KGR  +VF   D VWLH+RK+RFP
Sbjct: 1493 KVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFP 1552

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKL+PR  GPF+VLE INDN
Sbjct: 1553 DLRKSKLMPRAGGPFKVLEKINDN 1576



 Score =  167 bits (422), Expect(4) = 0.0
 Identities = 80/113 (70%), Positives = 93/113 (82%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 877  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 936

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++L+DHL HL+ V   LR  +LF NL KCTFCT++  FLG+V + QGI+VD+
Sbjct: 937  SRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDK 989



 Score =  131 bits (330), Expect(4) = 0.0
 Identities = 57/79 (72%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1297 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1356

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA++VADL  R
Sbjct: 1357 FIPCHKSDDAANVADLFFR 1375


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  372 bits (956), Expect(4) = 0.0
 Identities = 176/280 (62%), Positives = 221/280 (78%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            KI  I+ WP P  V+ VRSF GLA FYRRFV+DF++IAAP+ E+ KK+  + WG  QE+A
Sbjct: 988  KIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEA 1047

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F ++K KLTHAPLL LP+F KTFE+E DASG+G+  VL+Q+G+P+AYFSEKLSG +LNY 
Sbjct: 1048 FTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYS 1107

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH++ Q KLN+  A+WVEF ETFPYV
Sbjct: 1108 TYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYV 1167

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I+ K+GK+N++ADALSRRY ++S L  KI G E IK+ Y  D DF +  E+C E     +
Sbjct: 1168 IKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNK 1227

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +  + GF+FR NKLCIP  S+R LL++E+HGGGLMGHFGV
Sbjct: 1228 FIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGV 1267



 Score =  289 bits (739), Expect(4) = 0.0
 Identities = 133/204 (65%), Positives = 162/204 (79%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REI+RLHG+P TIVSDRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNR+L
Sbjct: 1370 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1429

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++K N+K WEECLPH+EFAYN ++HS TK  PFEIVY F P  P+DL P+P SE
Sbjct: 1430 STMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSE 1489

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K++AE + ++HE  + NIER   +Y    +KGR  +VF   D VWLH+RK+RFP
Sbjct: 1490 KVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFP 1549

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKL+PR  GPF+VLE INDN
Sbjct: 1550 DLRKSKLMPRAGGPFKVLEKINDN 1573



 Score =  167 bits (422), Expect(4) = 0.0
 Identities = 80/113 (70%), Positives = 93/113 (82%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 874  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 933

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++L+DHL HL+ V   LR  +LF NL KCTFCT++  FLG+V + QGI+VD+
Sbjct: 934  SRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDK 986



 Score =  131 bits (330), Expect(4) = 0.0
 Identities = 57/79 (72%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1294 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1353

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA++VADL  R
Sbjct: 1354 FIPCHKSDDAANVADLFFR 1372


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  369 bits (947), Expect(4) = 0.0
 Identities = 176/280 (62%), Positives = 216/280 (77%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I  WP PT ++ VRSF GLA FYRRFVKDF++IAAP+ E+ K+N  F W   Q  A
Sbjct: 960  KVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 1019

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F  +K KLTHAPLL LP+F KTFE+E DASG+G+  VL+QEG+P+ YFSEKLSG +LNY 
Sbjct: 1020 FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYS 1079

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R Q KLN+  A+WVEF E+FPYV
Sbjct: 1080 TYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYV 1139

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKEN++ADALSRRY ++S L  KI G E IKE Y  D DF +   +C+E     +
Sbjct: 1140 IKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNK 1199

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +    GF+FR NKLCIP  SVR LL++E+HGGGLMGHFGV
Sbjct: 1200 FVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGV 1239



 Score =  288 bits (737), Expect(4) = 0.0
 Identities = 137/204 (67%), Positives = 159/204 (77%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P TIVSDRD KFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++KKNIK WEECLPHVEFAYN + HS TK  PFEIVY   P  P+DL PLP SE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSE 1461

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K  AE + ++HE  + NIER   +Y    +KG+  + FE  D VWLH+RK+RFP
Sbjct: 1462 RVNFDAKYHAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1521

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKLLPR DGPF+VL+ INDN
Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDN 1545



 Score =  168 bits (426), Expect(4) = 0.0
 Identities = 79/113 (69%), Positives = 95/113 (84%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTF+RLMN VLRAFI  FVV+YFDDILIY
Sbjct: 846  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIY 905

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++++DH  HL+ V D LR E+LF NL+KCTFCT++  FLG+V + QGI+VD+
Sbjct: 906  SRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQ 958



 Score =  132 bits (331), Expect(4) = 0.0
 Identities = 57/79 (72%), Positives = 69/79 (87%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AK ++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1266 CTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1325

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA+HVADL  R
Sbjct: 1326 FIPCHKSDDATHVADLFFR 1344


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  374 bits (959), Expect(4) = 0.0
 Identities = 177/280 (63%), Positives = 223/280 (79%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            KI  I+ WP P  V+ VRSF GLA FYRRFV+DF++IAAP+ EV KK+  F WG  QE+A
Sbjct: 976  KIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTAQEEA 1035

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F ++K KLT+APLL LPNF KTFE+E DASG+G+  VL+Q+G+P+AYFSEK SG +LNY 
Sbjct: 1036 FTVLKDKLTYAPLLQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSLNYS 1095

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH++ Q KLN+  A+WVEF ETFPYV
Sbjct: 1096 TYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYV 1155

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKEN++ADALSRRY ++S L  KI G E IK+ Y  D +F +  ++C+E     +
Sbjct: 1156 IKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDAEFKDVLQNCKEGRTWNK 1215

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +  ++GF+FR NKLCIP  SVR LL++E+HGGGLMGHFGV
Sbjct: 1216 FVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGV 1255



 Score =  288 bits (738), Expect(4) = 0.0
 Identities = 134/204 (65%), Positives = 160/204 (78%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REI+RLHG+P TIVSDRD KFLS+FW+ LW KLG KLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1358 FFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTL 1417

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++K N K WEECLPH+EFAYN ++HS TK  PFEIVY F P  P+DL PLP SE
Sbjct: 1418 STMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSE 1477

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K+++E + +IHE  + NIER   +Y    +KGR  +VF   D VWLH+RK+RFP
Sbjct: 1478 KVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFP 1537

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKL+PR DGPF+VLE INDN
Sbjct: 1538 NLRKSKLMPRADGPFKVLEKINDN 1561



 Score =  165 bits (417), Expect(4) = 0.0
 Identities = 79/113 (69%), Positives = 93/113 (82%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 862  MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 921

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++L++HL HL+ V   LR  +LF NL KCTFCT++  FLG+V + QGI+VD+
Sbjct: 922  SKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDK 974



 Score =  130 bits (327), Expect(4) = 0.0
 Identities = 57/79 (72%), Positives = 69/79 (87%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1282 CTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1341

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA +VADL  R
Sbjct: 1342 FIPCHKSDDAVNVADLFFR 1360


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  366 bits (939), Expect(4) = 0.0
 Identities = 175/280 (62%), Positives = 215/280 (76%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I  WP PT ++ VRSF GLA FYRRFVKDF++IAAP+ E+ K+N  F W   Q  A
Sbjct: 960  KVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 1019

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F  +K KLTHAPLL LP+F KTFE+E DASG+G+  VL+QEG+P+AYFSEKLSG +LNY 
Sbjct: 1020 FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 1079

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R Q K N+  A+WVEF E+FPYV
Sbjct: 1080 TYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKHNRRHAKWVEFIESFPYV 1139

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKEN++ADALSRRY ++S L  KI G E IKE Y  D DF +   +C+E     +
Sbjct: 1140 IKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNK 1199

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +    GF+FR NKLCIP  SV  LL++E+HGGGLMGHFGV
Sbjct: 1200 FVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGV 1239



 Score =  289 bits (740), Expect(4) = 0.0
 Identities = 137/204 (67%), Positives = 160/204 (78%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P TIVSDRD KFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++KKNIK WEECLPHVEFAYN + HS TK  PFEIVY   P  P+DL PLP SE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSE 1461

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K +AE + ++HE  + NIER   +Y    +KG+  + FE  D VWLH+RK+RFP
Sbjct: 1462 RVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1521

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKLLPR DGPF+VL+ INDN
Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDN 1545



 Score =  167 bits (424), Expect(4) = 0.0
 Identities = 79/113 (69%), Positives = 94/113 (83%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 846  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 905

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++++DH  HL+ V D LR  +LF NL+KCTFCT++  FLG+V + QGI+VD+
Sbjct: 906  SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQ 958



 Score =  134 bits (337), Expect(4) = 0.0
 Identities = 58/79 (73%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1266 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1325

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA+HVADL  R
Sbjct: 1326 FIPCHKSDDATHVADLFFR 1344


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  367 bits (943), Expect(4) = 0.0
 Identities = 176/280 (62%), Positives = 215/280 (76%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I  WP PT ++ VRSF GLA FYR FVKDF++IAAP+ E+ K+N  F W   Q  A
Sbjct: 273  KVEAIHSWPVPTTITQVRSFLGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 332

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F  +K KLTHAPLL LP+F KTFE+E DASG+G+  VL+QEG+P+AYFSEKLSG +LNY 
Sbjct: 333  FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 392

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R Q KLN+  A+WVEF E+FPYV
Sbjct: 393  TYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYV 452

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKEN++ADALSRRY ++S L  KI G E IKE Y  D DF +   +C E     +
Sbjct: 453  IKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNK 512

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +    GF+FR NKLCIP  SVR LL++E+HGGGLMGHFGV
Sbjct: 513  FVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGV 552



 Score =  287 bits (735), Expect(4) = 0.0
 Identities = 136/204 (66%), Positives = 159/204 (77%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P TIVSDRD KFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 655  FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 714

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++KKNIK WEECLPHVEFAYN + HS TK  PFEIVY   P  P+DL PLP SE
Sbjct: 715  STMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSE 774

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K +AE + ++HE  + NIER   +Y    +KG+  + FE  D VWLH+RK+RFP
Sbjct: 775  RVNFDAKHRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 834

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKL PR DGPF+VL+ INDN
Sbjct: 835  NLRKSKLQPRADGPFKVLQKINDN 858



 Score =  167 bits (424), Expect(4) = 0.0
 Identities = 79/113 (69%), Positives = 94/113 (83%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 159  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 218

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++++DH  HL+ V D LR  +LF NL+KCTFCT++  FLG+V + QGI+VD+
Sbjct: 219  SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQ 271



 Score =  134 bits (337), Expect(4) = 0.0
 Identities = 58/79 (73%), Positives = 70/79 (88%)
 Frame = -2

Query: 838 CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
           C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 579 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 638

Query: 658 FIPCHNMNDASHVADLLGR 602
           FIPCH  +DA+HVADL  R
Sbjct: 639 FIPCHKSDDATHVADLFFR 657


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  368 bits (944), Expect(4) = 0.0
 Identities = 177/280 (63%), Positives = 215/280 (76%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I  WP PT ++ VRSF GLA FYRRFVKDF++IAAP+ E+ K+N  F W   Q  A
Sbjct: 960  KVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 1019

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F  +K KLTHAPLL LP+F KTFE E DASG+G+  VL+QEG+P+AYFSEKLSG +LNY 
Sbjct: 1020 FDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 1079

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R Q KLN+  A+WVEF E+FPYV
Sbjct: 1080 TYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYV 1139

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKEN++ADALSRRY ++S L  KI G E IKE Y  D DF     +C+E     +
Sbjct: 1140 IKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNK 1199

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +    GF+FR NKLCIP  SVR LL++E+HGGGLMGHFGV
Sbjct: 1200 FVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGV 1239



 Score =  285 bits (729), Expect(4) = 0.0
 Identities = 135/204 (66%), Positives = 158/204 (77%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P TIVSDRD KFLS+FW+ LW KLGTK LFSTTCHPQTDGQTEVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTL 1401

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++KKNIK WEECLPHVEFAYN + HS TK  PFEIVY   P  P+DL P P SE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSE 1461

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K +AE + ++HE  + NIER   +Y    +KG+  + FE  D VWLH+RK+RFP
Sbjct: 1462 RVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1521

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKLLPR DGPF+VL+ INDN
Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDN 1545



 Score =  165 bits (418), Expect(4) = 0.0
 Identities = 78/113 (69%), Positives = 93/113 (82%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 846  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 905

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++++DH  HL+ V D LR  +LF NL+KCTFCT++  FL +V + QGI+VD+
Sbjct: 906  SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQ 958



 Score =  134 bits (337), Expect(4) = 0.0
 Identities = 58/79 (73%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1266 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1325

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA+HVADL  R
Sbjct: 1326 FIPCHKSDDATHVADLFFR 1344


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  363 bits (932), Expect(4) = 0.0
 Identities = 173/280 (61%), Positives = 214/280 (76%), Gaps = 1/280 (0%)
 Frame = -3

Query: 1677 KIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEKA 1498
            K+  I  WP PT ++ VRSF GLA FYR FVKDF++IAAP+ E+ K+N  F W   Q  A
Sbjct: 856  KVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 915

Query: 1497 FQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNYP 1318
            F  +K KLTHAPLL LP+F KTFE+E DASG+G+  VL+QEG+P+AYFSEKLSG +LNY 
Sbjct: 916  FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 975

Query: 1317 TYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYV 1138
            TYDK+++ALVR+LETWQHYLWPKEFVIH DHESLKH+R Q KLN+  A+WVEF E+FPYV
Sbjct: 976  TYDKQLFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYV 1035

Query: 1137 IQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETAN-GE 961
            I++K+GKEN++ DALSRRY ++S L  KI G E IKE Y  D DF +   +C+E     +
Sbjct: 1036 IKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNK 1095

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +    GF+FR NKLCIP  SV  LL++E+HGGGLMGHFGV
Sbjct: 1096 FVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGV 1135



 Score =  285 bits (728), Expect(4) = 0.0
 Identities = 135/204 (66%), Positives = 158/204 (77%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P TIVSDRD KFLS+FW+ LW KLGTKLLFSTTCHPQTDGQTEVVNRT+
Sbjct: 1238 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTV 1297

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST+LRA++KKNIK WEECLPHVEFAYN + HS TK  PFEIVY   P  P+DL PLP  E
Sbjct: 1298 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLE 1357

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             +N D K +AE + ++HE  + NIER   +Y    +KG+  + FE  D VWLH+RK+RFP
Sbjct: 1358 RVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1417

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
              R+SKL PR DGPFQVL+ INDN
Sbjct: 1418 NLRKSKLPPRADGPFQVLQKINDN 1441



 Score =  167 bits (424), Expect(4) = 0.0
 Identities = 79/113 (69%), Positives = 94/113 (83%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MK GDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLMN VLRAFI  FVV+YFDDILIY
Sbjct: 742  MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIY 801

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDE 1679
            S++++DH  HL+ V D LR  +LF NL+KCTFCT++  FLG+V + QGI+VD+
Sbjct: 802  SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQ 854



 Score =  134 bits (337), Expect(4) = 0.0
 Identities = 58/79 (73%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C TC++AKS++ PHGLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVV+DRFSKMAH
Sbjct: 1162 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1221

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPCH  +DA+HVADL  R
Sbjct: 1222 FIPCHKSDDATHVADLFFR 1240


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  326 bits (836), Expect(4) = 0.0
 Identities = 164/280 (58%), Positives = 202/280 (72%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +KI  I+EWP P +V+ VRSFHGLASFYRRFV+DF++IAAP+TEVIKK+  F WG+EQ+ 
Sbjct: 914  EKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDD 973

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF L+K KL  APLL LP+F+K+FE+E DASG GI  VLMQ+ +P+AYFSEKLSGA LNY
Sbjct: 974  AFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSGATLNY 1033

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
             T DKE+YAL                              Q KL++  A+WVEF ETFPY
Sbjct: 1034 STNDKELYAL-----------------------------SQGKLSRRHAKWVEFIETFPY 1064

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE 961
            VI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY  D DF E +  C+     +
Sbjct: 1065 VIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEK 1124

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +   + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1125 FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164



 Score =  289 bits (740), Expect(4) = 0.0
 Identities = 135/204 (66%), Positives = 169/204 (82%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            FV+E+V+LHG+PRTIVSDRDAKFLS+FW+ILW KLGTKLLFST+CHPQTDGQTEVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
              +LRAI+K  + +WE+ LP VEFAYN T HS+T   PFE+VY FNPLTPLDL PLP ++
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1386

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
              NLDGKKKA+ +K+IHE+ RL IE++  + A + NKGR  ++F+  D VW+HMRKERFP
Sbjct: 1387 FANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFP 1446

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
            ++R++KL PRG GP++VLE I DN
Sbjct: 1447 SKRKTKLDPRGSGPYKVLERIGDN 1470



 Score =  176 bits (446), Expect(4) = 0.0
 Identities = 81/114 (71%), Positives = 96/114 (84%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            +  GDEWKT FKTKYGLYE LVMPFGL NAPSTFMRLMNHV + F   F+V+YFDDILI+
Sbjct: 801  LNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIF 860

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEE 1676
            SQNLD+HL HLK V +VLR ++LFANLKKCTFC ++ VFLGFV S+ G++VD+E
Sbjct: 861  SQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDE 914



 Score =  127 bits (320), Expect(4) = 0.0
 Identities = 56/76 (73%), Positives = 67/76 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C+ C+QAKS+  PHGLYTPLP+ ++PWIDISMDF+LGLPR+K G+DS+FVV+DRFSKMA 
Sbjct: 1191 CLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMAR 1250

Query: 658  FIPCHNMNDASHVADL 611
            FIPC   NDASHVADL
Sbjct: 1251 FIPCKKTNDASHVADL 1266


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  326 bits (836), Expect(4) = 0.0
 Identities = 164/280 (58%), Positives = 202/280 (72%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +KI  I+EWP P +V+ VRSFHGLASFYRRFV+DF++IAAP+TEVIKK+  F WG+EQ+ 
Sbjct: 914  EKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDD 973

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF L+K KL  APLL LP+F+K+FE+E DASG GI  VLMQ+ +P+AYFSEKLSGA LNY
Sbjct: 974  AFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSGATLNY 1033

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
             T DKE+YAL                              Q KL++  A+WVEF ETFPY
Sbjct: 1034 STNDKELYAL-----------------------------SQGKLSRRHAKWVEFIETFPY 1064

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE 961
            VI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY  D DF E +  C+     +
Sbjct: 1065 VIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEK 1124

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +   + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1125 FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164



 Score =  289 bits (740), Expect(4) = 0.0
 Identities = 135/204 (66%), Positives = 169/204 (82%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            FV+E+V+LHG+PRTIVSDRDAKFLS+FW+ILW KLGTKLLFST+CHPQTDGQTEVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
              +LRAI+K  + +WE+ LP VEFAYN T HS+T   PFE+VY FNPLTPLDL PLP ++
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1386

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
              NLDGKKKA+ +K+IHE+ RL IE++  + A + NKGR  ++F+  D VW+HMRKERFP
Sbjct: 1387 FANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFP 1446

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
            ++R++KL PRG GP++VLE I DN
Sbjct: 1447 SKRKTKLDPRGSGPYKVLERIGDN 1470



 Score =  176 bits (446), Expect(4) = 0.0
 Identities = 81/114 (71%), Positives = 96/114 (84%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            +  GDEWKT FKTKYGLYE LVMPFGL NAPSTFMRLMNHV + F   F+V+YFDDILI+
Sbjct: 801  LNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIF 860

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEE 1676
            SQNLD+HL HLK V +VLR ++LFANLKKCTFC ++ VFLGFV S+ G++VD+E
Sbjct: 861  SQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDE 914



 Score =  126 bits (317), Expect(4) = 0.0
 Identities = 56/76 (73%), Positives = 66/76 (86%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C+ C+QAKS+  PHGLYTPLP+ + PWIDISMDF+LGLPR+K G+DS+FVV+DRFSKMA 
Sbjct: 1191 CLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMAR 1250

Query: 658  FIPCHNMNDASHVADL 611
            FIPC   NDASHVADL
Sbjct: 1251 FIPCKKTNDASHVADL 1266


>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
          Length = 1281

 Score =  324 bits (831), Expect(4) = 0.0
 Identities = 167/298 (56%), Positives = 201/298 (67%)
 Frame = -3

Query: 1734 ISMCFLVLLRVHKEYRLMKKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPI 1555
            +++CFLV+L V KE R M+K                       SFYR FVKDF+++A P+
Sbjct: 678  LALCFLVMLLVXKELRWMRK-----------------------SFYRXFVKDFSTLAVPL 714

Query: 1554 TEVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQE 1375
            TE++KK  GFKWG   ++AF  IK+ L                        GI  +LMQE
Sbjct: 715  TEIVKKFVGFKWGSXXDRAFIXIKEMLC-----------------------GIRAILMQE 751

Query: 1374 GRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQH 1195
             RP+ YFSEKL+G  LNYPTYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKHL+GQ 
Sbjct: 752  KRPITYFSEKLNGTTLNYPTYDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQG 811

Query: 1194 KLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPL 1015
            KLN+  A+WVEF ETF YVI+YKQGKENIVADALSRRY L+STL AK+LGFE++KELY  
Sbjct: 812  KLNRRHAKWVEFIETFLYVIKYKQGKENIVADALSRRYALVSTLNAKLLGFEYVKELYAN 871

Query: 1014 DHDFNEEYESCEETANGEYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            D DF   Y +CE+T              EN+LC+PN S+R+LLVRE+HGGGLMGHFGV
Sbjct: 872  DDDFASVYGACEKTT------------FENRLCVPNSSMRELLVREAHGGGLMGHFGV 917



 Score =  261 bits (666), Expect(4) = 0.0
 Identities = 129/204 (63%), Positives = 148/204 (72%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+PR+IVSDRD KFLSYFWK+LW KLGTKLLFSTTCHPQTDGQTEVVNRTL
Sbjct: 1020 FFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFSTTCHPQTDGQTEVVNRTL 1079

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
            ST                           +HS T F PFEIVY FNPLT LDL PL ++E
Sbjct: 1080 STF--------------------------VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNE 1113

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
              +LDG+KK E VK++HE  R +IE++  QY  +ANKG  +++FE  DWVW+HMRKERFP
Sbjct: 1114 MXSLDGEKKVEMVKKLHESVRKHIEKKNEQYVSKANKGXXQVLFEPGDWVWVHMRKERFP 1173

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
             +R SKL PRGDGPFQVLE INDN
Sbjct: 1174 TRRXSKLHPRGDGPFQVLERINDN 1197



 Score =  132 bits (331), Expect(4) = 0.0
 Identities = 56/79 (70%), Positives = 70/79 (88%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C+TCRQAKS+V PHGLYTPLP+PS PW+DISMDF+LGLPRS+ GR S+FVV+DRFSKM +
Sbjct: 944  CITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRNGRXSIFVVVDRFSKMTY 1003

Query: 658  FIPCHNMNDASHVADLLGR 602
            FI CH ++DA+H+A+L  R
Sbjct: 1004 FISCHKIDDATHIANLFFR 1022



 Score =  128 bits (321), Expect(4) = 0.0
 Identities = 59/75 (78%), Positives = 66/75 (88%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MKEGDEWKT FKTKYGLYE LVMPFGL NAPSTFMRLMNH LR+FI  FVV+YFDDIL+Y
Sbjct: 604  MKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRSFISRFVVVYFDDILVY 663

Query: 1837 SQNLDDHLMHLKLVL 1793
            S+NLD+++ HL  VL
Sbjct: 664  SKNLDEYINHLHCVL 678


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  329 bits (844), Expect(4) = 0.0
 Identities = 155/283 (54%), Positives = 213/283 (75%), Gaps = 3/283 (1%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            + I  +Q WP+PT V+ VRSFHGLASFYRRF+K+F+++ APITE ++K   F+W E+ ++
Sbjct: 829  ENIAAMQSWPTPTTVTEVRSFHGLASFYRRFIKNFSTVVAPITECMRKGE-FQWTEQAQQ 887

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            +F+ IKQ + + P+L LP+F + FE+E DASG+GI  VL+Q  +P+AYFSEKL+GA L Y
Sbjct: 888  SFEKIKQLMCNTPILKLPDFDQLFEVECDASGVGIGAVLIQSQKPVAYFSEKLNGAKLKY 947

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
             TYDKE YA++R+L  W HYL PK FV+H DHE+LK++ GQHKLN   A+WVEF ++F +
Sbjct: 948  STYDKEFYAIIRALMHWNHYLKPKPFVLHSDHEALKYINGQHKLNFRHAKWVEFLQSFTF 1007

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEE---TA 970
              +YK+GK+N+VADALSRR+ L+S ++ ++LGFE +KELY  D DF+EE+ +  E     
Sbjct: 1008 SSKYKEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGHKNQ 1067

Query: 969  NGEYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
              +Y   EGFLF+ NKLC+P  S RDLL+RE H GG+ GHFGV
Sbjct: 1068 GSKYLLQEGFLFQGNKLCVPRGSYRDLLIREVHSGGMGGHFGV 1110



 Score =  231 bits (588), Expect(4) = 0.0
 Identities = 113/201 (56%), Positives = 145/201 (72%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F++EIVRLHG+P+TIVSDRD KF+ YFWK LW  L TKLLFST+ HPQTDGQTEV NRTL
Sbjct: 1212 FLKEIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTL 1271

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
              +LR ++ K++K W+  L   EFA+N    +AT   PFE+VY  NPL PLDLS +P  E
Sbjct: 1272 GRILRCLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVP-KE 1330

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
            ++NLD  K+AE + ++HE  +  IER   QY K     + K  FE  D VW+H+RKERFP
Sbjct: 1331 NINLDAMKRAEQLLKLHETVKRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFP 1390

Query: 74   AQRRSKLLPRGDGPFQVLEHI 12
            A+R++KL+PR DGPF+V+E I
Sbjct: 1391 AKRKNKLMPRSDGPFEVVEKI 1411



 Score =  148 bits (373), Expect(4) = 0.0
 Identities = 68/115 (59%), Positives = 89/115 (77%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            ++EGDEWKT FKTK+GLYE LVMPFGL NAPSTFMRLM  VLR  +  F V+YFDDIL+Y
Sbjct: 716  IREGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVY 775

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEED 1673
            S+   +HL HL++V  +LR++KL+  L+KCTF   +  FLG++ S +GI VD+E+
Sbjct: 776  SKTKGEHLKHLEVVFKILREQKLYGKLEKCTFMVEEVAFLGYLISGRGISVDQEN 830



 Score = 97.8 bits (242), Expect(4) = 0.0
 Identities = 45/76 (59%), Positives = 57/76 (75%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C  C+ +KS   P G YTPLP+PS PW D+SMDF++ LPR++RG+DSV VV+DRFSKMAH
Sbjct: 1137 CSKCQLSKSSFQP-GPYTPLPVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAH 1195

Query: 658  FIPCHNMNDASHVADL 611
            F+ C    DA  VA+L
Sbjct: 1196 FVACKKTEDAVSVAEL 1211


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score =  361 bits (926), Expect(4) = 0.0
 Identities = 172/280 (61%), Positives = 219/280 (78%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +K+  I+EWP+P +++ VRSFHGLASFY RFVKDF+++AAP+TE++KK+ GFKWG EQ++
Sbjct: 411  EKLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDR 470

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF  IK++L  APLL+LPNF+KTFEIE DASG+GI  VLMQE RP+AYFSEKL+GA LNY
Sbjct: 471  AFIEIKERLCGAPLLSLPNFSKTFEIECDASGIGIATVLMQEKRPIAYFSEKLNGATLNY 530

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
            PTYDKE+YAL                          HL+GQ KLN+  A+WVEF ETFPY
Sbjct: 531  PTYDKELYAL--------------------------HLKGQDKLNRRHAKWVEFIETFPY 564

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE 961
            V++YKQGKENIV +ALSRRY L+STL AK+LGFE++KELY  D+DF   Y +CE+ A G+
Sbjct: 565  VVKYKQGKENIVVNALSRRYALVSTLNAKLLGFEYVKELYANDNDFASLYGACEKAAFGK 624

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            ++R +G+LFREN+LC+PN S+ +LLV E+HGGGLMGHFGV
Sbjct: 625  FYRLDGYLFRENRLCVPNSSMCELLVHEAHGGGLMGHFGV 664



 Score =  185 bits (469), Expect(4) = 0.0
 Identities = 88/114 (77%), Positives = 100/114 (87%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MKEGDEWKT FKTKYGLYE LVMPFGL NA STFMRLMNHVLRAFI  FVV+YFDDIL+Y
Sbjct: 298  MKEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNHVLRAFIGRFVVVYFDDILVY 357

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEE 1676
            S+NLD+H+ HL  VL +LRKEKL+ANLKKC+FC +K VFLG+V S +GI+VDEE
Sbjct: 358  SKNLDEHINHLHCVLAILRKEKLYANLKKCSFCMDKVVFLGYVVSAKGIEVDEE 411



 Score =  120 bits (301), Expect(4) = 0.0
 Identities = 54/79 (68%), Positives = 66/79 (83%)
 Frame = -2

Query: 838 CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
           C+T RQAKS+V PH LYTPL + S  W+DISMDF+LGLPRS+ GRDS+FVV+DRFSKMAH
Sbjct: 691 CITYRQAKSRVLPHRLYTPLLVSSASWVDISMDFVLGLPRSRNGRDSIFVVVDRFSKMAH 750

Query: 658 FIPCHNMNDASHVADLLGR 602
           FI CH  +DA+H+A+L  R
Sbjct: 751 FISCHKADDATHIANLFFR 769



 Score =  102 bits (255), Expect(4) = 0.0
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = -1

Query: 614 FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
           F REIVRLHG+PR+IVSD+D KFLSYFWK+ W KLGTKLLFSTTC PQTDGQT++ N   
Sbjct: 767 FFREIVRLHGVPRSIVSDQDVKFLSYFWKVFWRKLGTKLLFSTTCPPQTDGQTKIKNEQY 826

Query: 434 ST 429
           +T
Sbjct: 827 AT 828



 Score = 92.0 bits (227), Expect = 9e-16
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = -1

Query: 167 QYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 3
           QYA +ANKGR +++FE  DWVW+HMRKERFP  RR KL PRGDGPFQVLE INDN
Sbjct: 825 QYATKANKGRRQVLFEPGDWVWVHMRKERFPICRRFKLHPRGDGPFQVLERINDN 879


>emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera]
          Length = 1115

 Score =  357 bits (916), Expect(4) = 0.0
 Identities = 174/275 (63%), Positives = 212/275 (77%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +K   I+EWP+P  ++ VRSFH LASFY RFVKDF+S                   EQ++
Sbjct: 597  EKXKAIKEWPTPKXITEVRSFHXLASFYLRFVKDFSS-------------------EQDR 637

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF  IK++L  APLLALP+F+KTFEIE DASG+GI  VLM E   + YFSEKL+   LNY
Sbjct: 638  AFIEIKERLCGAPLLALPDFSKTFEIECDASGIGIGGVLMXEKXXITYFSEKLNXTTLNY 697

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
            PTYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKHL+GQ KLN+  A+WVEF ETFPY
Sbjct: 698  PTYDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQGKLNRXHAKWVEFIETFPY 757

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE 961
            VI+YKQGKENIV DALSRRY L+STL AK+LGFE++KELY  D DF+  Y +CE+   G+
Sbjct: 758  VIKYKQGKENIVVDALSRRYALVSTLNAKLLGFEYVKELYANDDDFSSVYGACEKITFGK 817

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLM 856
            ++R +G+LFREN+LC+PN S+ +LLV E+HGGGLM
Sbjct: 818  FYRLDGYLFRENRLCVPNSSMLELLVHEAHGGGLM 852



 Score =  177 bits (450), Expect(4) = 0.0
 Identities = 84/114 (73%), Positives = 96/114 (84%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            MKEGDEWK  FKTKYGLYE LVMPFGL NAPSTFMRLMNH L +FI  FV++YFDDIL+Y
Sbjct: 484  MKEGDEWKIAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALHSFIGRFVLVYFDDILVY 543

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEE 1676
            S+NLD+H+ HL  VL VLRKEKL+ANLKKC+FC +K VFLG+V S +GI VD E
Sbjct: 544  SKNLDEHINHLHCVLAVLRKEKLYANLKKCSFCMDKVVFLGYVVSAKGIXVDXE 597



 Score =  127 bits (320), Expect(4) = 0.0
 Identities = 56/75 (74%), Positives = 67/75 (89%)
 Frame = -2

Query: 826  RQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAHFIPC 647
            RQAKS+V PHGLYTPLP+PS PW+DISMDF+LGLPRS+ GRDS+FVV+DRFSKMAHFI C
Sbjct: 870  RQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRNGRDSIFVVVDRFSKMAHFISC 929

Query: 646  HNMNDASHVADLLGR 602
            H  +DA+H+A+L  R
Sbjct: 930  HKTDDATHIANLFFR 944



 Score =  103 bits (256), Expect(4) = 0.0
 Identities = 46/54 (85%), Positives = 50/54 (92%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTE 453
            F R+IVRLHG+PR+IVSDRD KFLSYFWK+LW KLGTKLLF TTCHPQTDGQTE
Sbjct: 942  FFRKIVRLHGVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFFTTCHPQTDGQTE 995



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = -1

Query: 146  KGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 3
            +GR +++FE  DWV +HMRKERFP  R+SKL PRGDGPFQVLE INDN
Sbjct: 995  EGRRQVLFEPGDWVXVHMRKERFPTCRQSKLHPRGDGPFQVLERINDN 1042


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  286 bits (731), Expect(4) = 0.0
 Identities = 136/282 (48%), Positives = 195/282 (69%), Gaps = 3/282 (1%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +KI  I EWP+PT++  VRSFHGLASFYRRF+++F+SI +PITE +KK+ GF+W    +K
Sbjct: 754  EKIRAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKD-GFEWSHSAQK 812

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF+ +K  +T AP+LALP+F K F +E DAS +GI  VL Q+GRP+ +FSEKL+ +   Y
Sbjct: 813  AFERVKALMTEAPVLALPDFEKLFVVECDASYVGIGAVLSQDGRPIEFFSEKLTDSRRRY 872

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
             TYD E YALVR++  WQHYL  +EF ++ DH++L++L  Q KL+   A+W  F   F +
Sbjct: 873  STYDLEFYALVRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNF 932

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNE---EYESCEETA 970
             ++YK G+ N VADALSRR  ++S ++ ++ GFE +K  Y  D  F++   + +   +  
Sbjct: 933  SLKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAE 992

Query: 969  NGEYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 844
            N  Y  HE +LF+ N+LCIP  S+R+ ++RE HG GL GHFG
Sbjct: 993  NLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFG 1034



 Score =  195 bits (495), Expect(4) = 0.0
 Identities = 96/204 (47%), Positives = 134/204 (65%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIV LHG+P +IVSDR  KF+ YFW+ LW K GT+L +S+TCHPQTDGQTEVVNR+L
Sbjct: 1138 FFREIVILHGIPTSIVSDRHVKFMGYFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSL 1197

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
              +LR +I+ N KTW+  +P  EFAYN +++ + K  PFE  Y   P   LDL PLP   
Sbjct: 1198 GNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEA 1257

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             ++ +G+  A+ +++IHE+ +  ++    +Y+  AN+ R K  FE  D V +H+R+ERFP
Sbjct: 1258 RVSNEGELFADQIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFP 1317

Query: 74   AQRRSKLLPRGDGPFQVLEHINDN 3
                 KL  R  GP +VL+ I+ N
Sbjct: 1318 KGTYHKLKSRKFGPCKVLKKISSN 1341



 Score =  149 bits (377), Expect(4) = 0.0
 Identities = 71/117 (60%), Positives = 91/117 (77%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            M++GDEWKT FKT  GL+E LVMPFGL NAPSTFMR+M  VL+ F+ +FVV+YFDDILIY
Sbjct: 641  MRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVVYFDDILIY 700

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEDSR 1667
            S   + HL HL+ VL+VL+KE+L+ NLKKC+F   + VFLGF+ S +G++ D E  R
Sbjct: 701  SHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIR 757



 Score =  102 bits (253), Expect(4) = 0.0
 Identities = 45/79 (56%), Positives = 56/79 (70%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
            C  C   K      GLY PLP P  PWI +SMDF+LGLP++ +G DS+FVV+DRFSKMAH
Sbjct: 1062 CPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVVVDRFSKMAH 1121

Query: 658  FIPCHNMNDASHVADLLGR 602
            FIPC   +DA+H+A+L  R
Sbjct: 1122 FIPCFRTSDATHIAELFFR 1140


>ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508709261|gb|EOY01158.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 786

 Score =  286 bits (731), Expect(4) = 0.0
 Identities = 136/282 (48%), Positives = 195/282 (69%), Gaps = 3/282 (1%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +KI  I EWP+PT++  VRSFHGLASFYRRF+++F+SI +PITE +KK+ GF+W    +K
Sbjct: 206  EKIRAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKD-GFEWSHSAQK 264

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF+ +K  +T AP+LALP+F K F +E DAS +GI  VL Q+GRP+ +FSEKL+ +   Y
Sbjct: 265  AFERVKALMTEAPVLALPDFEKLFVVECDASYVGIGAVLSQDGRPIEFFSEKLTDSRRRY 324

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
             TYD E YALVR++  WQHYL  +EF ++ DH++L++L  Q KL+   A+W  F   F +
Sbjct: 325  STYDLEFYALVRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNF 384

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNE---EYESCEETA 970
             ++YK G+ N VADALSRR  ++S ++ ++ GFE +K  Y  D  F++   + +   +  
Sbjct: 385  SLKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAE 444

Query: 969  NGEYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 844
            N  Y  HE +LF+ N+LCIP  S+R+ ++RE HG GL GHFG
Sbjct: 445  NLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFG 486



 Score =  194 bits (492), Expect(4) = 0.0
 Identities = 94/197 (47%), Positives = 131/197 (66%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            F REIVRLHG+P +IVSDRD KF+ +FW+ LW K GT+L +S+TCHPQTDGQTEVVNR+L
Sbjct: 590  FFREIVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSL 649

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
              +LR +I+ N KTW+  +P  EFAYN +++ + K  PFE  Y   P   LDL PLP   
Sbjct: 650  GNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEA 709

Query: 254  HLNLDGKKKAEFVKQIHEKARLNIERRT*QYAKQANKGRHKIVFEAEDWVWLHMRKERFP 75
             ++ +G+  A+ +++IHE+ +  ++    +Y+  AN+ R K  FE  D V +H+R+ERFP
Sbjct: 710  RVSNEGELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFP 769

Query: 74   AQRRSKLLPRGDGPFQV 24
                 KL  R  GP +V
Sbjct: 770  KGTYHKLKSRKFGPCKV 786



 Score =  149 bits (377), Expect(4) = 0.0
 Identities = 71/117 (60%), Positives = 91/117 (77%)
 Frame = -2

Query: 2017 MKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLRAFIENFVVIYFDDILIY 1838
            M++GDEWKT FKT  GL+E LVMPFGL NAPSTFMR+M  VL+ F+ +FVV+YFDDILIY
Sbjct: 93   MRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVVYFDDILIY 152

Query: 1837 SQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEDSR 1667
            S   + HL HL+ VL+VL+KE+L+ NLKKC+F   + VFLGF+ S +G++ D E  R
Sbjct: 153  SHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIR 209



 Score =  100 bits (248), Expect(4) = 0.0
 Identities = 44/79 (55%), Positives = 56/79 (70%)
 Frame = -2

Query: 838 CVTCRQAKSQVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVMDRFSKMAH 659
           C  C   K      GLY PLP P  PWI +SMDF+LGLP++ +G DS+FVV+DRFSKMAH
Sbjct: 514 CPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAH 573

Query: 658 FIPCHNMNDASHVADLLGR 602
           FIPC   ++A+H+A+L  R
Sbjct: 574 FIPCFRTSNATHIAELFFR 592


>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
          Length = 1191

 Score =  382 bits (981), Expect(3) = 0.0
 Identities = 182/280 (65%), Positives = 225/280 (80%)
 Frame = -3

Query: 1680 KKIHVIQEWPSPTNVSNVRSFHGLASFYRRFVKDFNSIAAPITEVIKKNTGFKWGEEQEK 1501
            +KI  I+EWP P +V+ VRSFH LASFYRRFV+DF++IAAP+TEVIKK+  F WG+EQ+ 
Sbjct: 642  EKIKAIKEWPKPNSVTEVRSFHRLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDD 701

Query: 1500 AFQLIKQKLTHAPLLALPNFAKTFEIEFDASGLGICIVLMQEGRPLAYFSEKLSGAALNY 1321
            AF L+K KL  APLL L +F+K+FE+E DASG GI  VLM + +P+AYFSEK SGA LNY
Sbjct: 702  AFNLLKDKLCSAPLLQLLDFSKSFEVECDASGKGIGAVLMPDSKPIAYFSEKPSGATLNY 761

Query: 1320 PTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPY 1141
             TYDKE+YALVR+L TWQHYLWP+EFV+  DHESLK+L+ Q KL++  A+WVEF ETFPY
Sbjct: 762  LTYDKELYALVRALATWQHYLWPREFVVKTDHESLKYLKSQGKLSRRHAKWVEFIETFPY 821

Query: 1140 VIQYKQGKENIVADALSRRYILISTLAAKILGFEHIKELYPLDHDFNEEYESCEETANGE 961
            VI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY  D DF E +  C+     +
Sbjct: 822  VIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEK 881

Query: 960  YFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 841
            +   + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 882  FNLQDEFLFKENKLCVPNCSLRELFVREAHYGGLMGHFGV 921



 Score =  206 bits (525), Expect(3) = 0.0
 Identities = 99/139 (71%), Positives = 116/139 (83%)
 Frame = -1

Query: 614  FVREIVRLHGMPRTIVSDRDAKFLSYFWKILWCKLGTKLLFSTTCHPQTDGQTEVVNRTL 435
            FV+E+V+LHG+PRTIVSDRDAKFLS+FW+ILW KLGTKLLFST+CHPQTDGQTEVVNRTL
Sbjct: 1049 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1108

Query: 434  STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 255
              +LRAI+K  + +WE+ LP VEFAYN T HS+T   PFE+VY FNPLTPLDL PLP ++
Sbjct: 1109 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1168

Query: 254  HLNLDGKKKAEFVKQIHEK 198
              NLDGKKKA   K+ H K
Sbjct: 1169 FANLDGKKKA---KEAHNK 1184



 Score =  115 bits (288), Expect(3) = 0.0
 Identities = 57/101 (56%), Positives = 67/101 (66%), Gaps = 25/101 (24%)
 Frame = -2

Query: 838  CVTCRQAKSQVPPHGLYTPLPIPS-------------------------TPWIDISMDFM 734
            C+ C+QAKS+  PHGLYTPLP+ +                         TPWIDISMDF+
Sbjct: 948  CLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVFNTPWIDISMDFI 1007

Query: 733  LGLPRSKRGRDSVFVVMDRFSKMAHFIPCHNMNDASHVADL 611
            LGLPR+K G+DS+FVV+DRFSKMA FIPC   NDASHVADL
Sbjct: 1008 LGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1048