BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00023966
         (1340 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   409   e-111
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              390   e-106
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   374   e-101
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   363   9e-98
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   362   2e-97
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   362   3e-97
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   344   4e-92
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   344   4e-92
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   344   4e-92
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   343   1e-91
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   343   1e-91
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   334   6e-89
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   334   6e-89
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su...   334   6e-89
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   333   1e-88
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   333   1e-88
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   328   3e-87
ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phas...   324   5e-86
ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phas...   324   5e-86
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su...   323   8e-86

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  409 bits (1050), Expect = e-111
 Identities = 209/383 (54%), Positives = 269/383 (70%)
 Frame = +2

Query: 2    ISVAVEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGE 181
            I+V++  SK S I LDTV+D V+PFLLG+V+KG+   +KVDILWN  P+ S   KS SG 
Sbjct: 1088 ITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGR 1146

Query: 182  LCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRS 361
            L L+V+VS +C     W +L++A L+IMD+IDWERSHPDNIHDIF  YGIDA  KYFL S
Sbjct: 1147 LYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNS 1206

Query: 362  LKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPG 541
            LKS +SDIGKT+LPEHLLLVA CLS TGEF+GLNA+G+++Q +L SISSPFMQ CFS+PG
Sbjct: 1207 LKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPG 1266

Query: 542  SCFIXXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGE 721
            SCFI             +LDA+AWGK   VG+GG FDILYS KGH+L +P D++ +L  +
Sbjct: 1267 SCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQ 1326

Query: 722  SSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVV 901
            +S    N+++++P        K GA+ + A  D  +KGC + E++   V R   SL+D+ 
Sbjct: 1327 TSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQ 1386

Query: 902  KLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSR 1081
            KLS  L+ IL K  IN  LSE DK+ +M AL++HP   EK+G G Q+I+V  H K+ N+R
Sbjct: 1387 KLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTR 1446

Query: 1082 CFMLVRTDGTVVDFSYRKCVMGA 1150
            CF LVRTDGT  DFSY KCV GA
Sbjct: 1447 CFSLVRTDGTEEDFSYHKCVHGA 1469


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  390 bits (1001), Expect = e-106
 Identities = 202/383 (52%), Positives = 261/383 (68%)
 Frame = +2

Query: 2    ISVAVEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGE 181
            I+V++  SK S I LDTV+D V+PFLLG+V+KG    +  D+L           KS SG 
Sbjct: 957  ITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGC-CIKNSDVL-----------KSSSGR 1004

Query: 182  LCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRS 361
            L L+V+VS +C     W +L++A L+IMD+IDWERSHPDNIHDIF  YGIDA  KYFL S
Sbjct: 1005 LYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNS 1064

Query: 362  LKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPG 541
            LKS +SDIGKT+LPEHLLLVA CLS TGEF+GLNA+G+++Q +L SISSPFMQ CFS+PG
Sbjct: 1065 LKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPG 1124

Query: 542  SCFIXXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGE 721
            SCFI             +LDA+AWGK   VG+GG FDILYS KGH+L +P D++ +L  +
Sbjct: 1125 SCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQ 1184

Query: 722  SSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVV 901
            +S    N+++++P        K GA+ + A  D  +KGC + E++   V R   SL+D+ 
Sbjct: 1185 TSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQ 1244

Query: 902  KLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSR 1081
            KLS  L+ IL K  IN  LSE DK+ +M AL++HP   EK+G G Q+I+V  H K+ N+R
Sbjct: 1245 KLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTR 1304

Query: 1082 CFMLVRTDGTVVDFSYRKCVMGA 1150
            CF LVRTDGT  DFSY KCV GA
Sbjct: 1305 CFSLVRTDGTEEDFSYHKCVHGA 1327


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  374 bits (959), Expect = e-101
 Identities = 188/379 (49%), Positives = 255/379 (67%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK S + LD ++D V+P+LL +VIKG    +KVDILW      SK  KS  GEL L+
Sbjct: 1084 VEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGELYLR 1143

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            VFVS +    K+W +L+N  L+IMD+IDW RSHPDNI+ +   YGIDA  K+FL +LKS 
Sbjct: 1144 VFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSA 1203

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            +SD GKTIL EHLL+VA+CLS TGEF+GLN++G+ +Q + A +SSPFMQACFSNP + F+
Sbjct: 1204 ISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASFV 1263

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                          +DA+AWG+   +GTGGQFDI+YS K  +L +PVDV+ +L    S Q
Sbjct: 1264 KAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSISSQ 1323

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
              ++E  +P       +K+G+  + A  D  ++     E     ++R   +LDD+ +LS 
Sbjct: 1324 KQDVEFEVPKALNFKSEKYGSLLIDALGDSASEELKKIETKRRSIWRELLTLDDIQRLSR 1383

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFML 1093
             LR+ILHK  I+  LSEAD + +M AL++HP   EK+G+G Q+I+VG HP+H N+RCF L
Sbjct: 1384 ALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARCFSL 1443

Query: 1094 VRTDGTVVDFSYRKCVMGA 1150
            VRTDGT+VDFSY KCV+GA
Sbjct: 1444 VRTDGTIVDFSYHKCVLGA 1462


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  363 bits (932), Expect = 9e-98
 Identities = 193/401 (48%), Positives = 268/401 (66%), Gaps = 5/401 (1%)
 Frame = +2

Query: 2    ISVAVEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGE 181
            I+V++E SK S+I L TVQD ++PFLL +++KG    EKVDILW+   N SK+ +  SGE
Sbjct: 998  ITVSIECSKNSVIQLITVQDLLIPFLLETIVKGFREIEKVDILWSDRSNTSKATRDSSGE 1057

Query: 182  LCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRS 361
            L LKV +S +      W+ L+N  L IMDLIDW RSHP+N+++  + YGID+  K+FL +
Sbjct: 1058 LYLKVSMSGDSGVKSYWSTLMNDCLRIMDLIDWSRSHPENVNEFCSVYGIDSGWKFFLNN 1117

Query: 362  LKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPG 541
            L+S VSD+GKTILPEHLLLVA+ LSVTG F+GL  +G+++Q + AS+++PF QACFSNP 
Sbjct: 1118 LESAVSDVGKTILPEHLLLVANTLSVTGNFVGLTPKGLARQREHASVATPFSQACFSNPA 1177

Query: 542  SCFIXXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGE 721
            +CFI              LDA+AWG   P+GTGGQF++++SGKGH++DKP++V+ ML   
Sbjct: 1178 ACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFELVFSGKGHEVDKPINVYDMLATG 1237

Query: 722  SS--LQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTN---SERLLNPVFRRDHS 886
             S  +QG N     P  + +   K+GA  L   D  +++G      S+  +  +F+    
Sbjct: 1238 ISPDVQGVN---ETPDAKNHRSVKFGA--LLLYDKSVSQGLKKLGISKDRIKKLFK---- 1288

Query: 887  LDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPK 1066
            LDD+  LS  L  IL+K  IN+ L   DKS +M AL++HP   EK+GTG QDI+V  HPK
Sbjct: 1289 LDDIWILSNALAKILNKYPINQSLDHKDKSTLMIALYFHPRIDEKIGTGFQDIKVAYHPK 1348

Query: 1067 HGNSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYR 1189
            H +SRCF+LVR DGTV DFSYRKCV+GA    +  + ++Y+
Sbjct: 1349 HQSSRCFVLVRADGTVEDFSYRKCVLGALEIIDPQAAEIYK 1389


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
            gi|462406650|gb|EMJ12114.1| hypothetical protein
            PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  362 bits (930), Expect = 2e-97
 Identities = 188/378 (49%), Positives = 247/378 (65%)
 Frame = +2

Query: 17   EISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKV 196
            E SK S   LD  +D V+PFLLG+V+KG    +KVDILWN  P  SK     SGEL L+V
Sbjct: 967  ENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRV 1026

Query: 197  FVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTV 376
             +S      ++W++L++  L+IMDLIDW RSHPDN+HD    YGIDA  KYFL +L++  
Sbjct: 1027 SMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAA 1086

Query: 377  SDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFIX 556
            +DIGK ILP+HL+LVADCLS TGEF+GLNA+GI++Q    S+SSPF+QACFS+PG+CFI 
Sbjct: 1087 NDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIK 1146

Query: 557  XXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQG 736
                        +++A+AWG   P GTG QFDILYS +G  L KP++ + +L  + S   
Sbjct: 1147 AAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSR 1206

Query: 737  NNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSIT 916
             N      A+  N  DK    S+         G   SE +   V R+  +++D+ K + T
Sbjct: 1207 ENAFETSKAW-NNTLDKCDVTSI---------GLEKSESVFKSVIRKYLTINDIQKWTQT 1256

Query: 917  LRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFMLV 1096
            L+ IL K  INE L+E DKS++  ALH+HPH  +KMG+G QDI+VG+HPKH N+RCFMLV
Sbjct: 1257 LKRILRKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQHPKHENARCFMLV 1316

Query: 1097 RTDGTVVDFSYRKCVMGA 1150
            R D T  DFSY KCV+GA
Sbjct: 1317 RIDRTEEDFSYHKCVLGA 1334


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  362 bits (928), Expect = 3e-97
 Identities = 186/379 (49%), Positives = 255/379 (67%), Gaps = 1/379 (0%)
 Frame = +2

Query: 17   EISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKV 196
            E +K S + LD +QD ++ FLLG+VI+G +  ++VDI WN  P   K + S  GEL L+V
Sbjct: 1073 ENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSH-GELYLRV 1131

Query: 197  FVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTV 376
             +S    S + W  L+N  L IMDLIDW RSHPDN H +   YGID+  KYFL SL+S  
Sbjct: 1132 TMSGEGNS-RFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESAT 1190

Query: 377  SDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFIX 556
             D+GKTI  EHLLLV++ LS TGEF+GLN +G++ Q + A + +PFMQACFS+PG+C I 
Sbjct: 1191 LDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIK 1250

Query: 557  XXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQG 736
                        +LDA+AWG+   +GTGGQFDILYSGKGH+L+KPVDV+++L G+S+ + 
Sbjct: 1251 AAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEK 1310

Query: 737  NNIEMRIPAYQKN-MCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
             N   +I +  KN + +K+ A+ +        KG    + +   + R+  +L+D+ KLS 
Sbjct: 1311 QN--TKIESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSF 1368

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFML 1093
             LR ILHK S+NE L+E DKS +M AL++HPH  EK+G G QDI+VG H K+ N+RCF+L
Sbjct: 1369 ALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVL 1428

Query: 1094 VRTDGTVVDFSYRKCVMGA 1150
            +R+DGT  DFSY KCV+GA
Sbjct: 1429 IRSDGTTEDFSYHKCVLGA 1447


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  344 bits (883), Expect = 4e-92
 Identities = 190/403 (47%), Positives = 255/403 (63%), Gaps = 6/403 (1%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE  K + I L+T+Q +V+PFLL +V+KG    +KVDILW     ASKS     GEL L+
Sbjct: 1046 VENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLR 1105

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S  C    +W+ L+N   +IMD+IDW RSHPDNI      YGIDA  ++FL +L+S 
Sbjct: 1106 VSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESA 1165

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            +SD GK ILPEHLL+VA+ LS TGEF+GLNA+G++ Q   +S+SSPF+QA FSNPG+ FI
Sbjct: 1166 ISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFI 1225

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         ++DA+ WGK   VGTGG FDI+YSG+G  L KPVDV+++L    S +
Sbjct: 1226 KAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSK 1285

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTN--SERLLNPVFRRDHSLDDVVKL 907
             N  ++++   Q  + DK GA+      D   KG  N   E +   V R+  + +DV++L
Sbjct: 1286 QNE-KLKVCKAQGLISDKCGAK----FGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRL 1340

Query: 908  SITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCF 1087
            S  L+ ILHK SI + LSE DK+ V+ AL++HP   EK+G  P DI+V  HP+H NSRCF
Sbjct: 1341 SNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCF 1400

Query: 1088 MLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYR----RLGMA 1204
             LVR DG++ DFSY KCV+GA         ++YR    RLG A
Sbjct: 1401 SLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1443


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  344 bits (883), Expect = 4e-92
 Identities = 190/403 (47%), Positives = 255/403 (63%), Gaps = 6/403 (1%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE  K + I L+T+Q +V+PFLL +V+KG    +KVDILW     ASKS     GEL L+
Sbjct: 1084 VENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLR 1143

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S  C    +W+ L+N   +IMD+IDW RSHPDNI      YGIDA  ++FL +L+S 
Sbjct: 1144 VSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESA 1203

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            +SD GK ILPEHLL+VA+ LS TGEF+GLNA+G++ Q   +S+SSPF+QA FSNPG+ FI
Sbjct: 1204 ISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFI 1263

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         ++DA+ WGK   VGTGG FDI+YSG+G  L KPVDV+++L    S +
Sbjct: 1264 KAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSK 1323

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTN--SERLLNPVFRRDHSLDDVVKL 907
             N  ++++   Q  + DK GA+      D   KG  N   E +   V R+  + +DV++L
Sbjct: 1324 QNE-KLKVCKAQGLISDKCGAK----FGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRL 1378

Query: 908  SITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCF 1087
            S  L+ ILHK SI + LSE DK+ V+ AL++HP   EK+G  P DI+V  HP+H NSRCF
Sbjct: 1379 SNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCF 1438

Query: 1088 MLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYR----RLGMA 1204
             LVR DG++ DFSY KCV+GA         ++YR    RLG A
Sbjct: 1439 SLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1481


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  344 bits (883), Expect = 4e-92
 Identities = 190/403 (47%), Positives = 255/403 (63%), Gaps = 6/403 (1%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE  K + I L+T+Q +V+PFLL +V+KG    +KVDILW     ASKS     GEL L+
Sbjct: 1046 VENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLR 1105

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S  C    +W+ L+N   +IMD+IDW RSHPDNI      YGIDA  ++FL +L+S 
Sbjct: 1106 VSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESA 1165

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            +SD GK ILPEHLL+VA+ LS TGEF+GLNA+G++ Q   +S+SSPF+QA FSNPG+ FI
Sbjct: 1166 ISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFI 1225

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         ++DA+ WGK   VGTGG FDI+YSG+G  L KPVDV+++L    S +
Sbjct: 1226 KAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSK 1285

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTN--SERLLNPVFRRDHSLDDVVKL 907
             N  ++++   Q  + DK GA+      D   KG  N   E +   V R+  + +DV++L
Sbjct: 1286 QNE-KLKVCKAQGLISDKCGAK----FGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRL 1340

Query: 908  SITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCF 1087
            S  L+ ILHK SI + LSE DK+ V+ AL++HP   EK+G  P DI+V  HP+H NSRCF
Sbjct: 1341 SNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCF 1400

Query: 1088 MLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYR----RLGMA 1204
             LVR DG++ DFSY KCV+GA         ++YR    RLG A
Sbjct: 1401 SLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1443


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  343 bits (879), Expect = 1e-91
 Identities = 180/380 (47%), Positives = 250/380 (65%), Gaps = 1/380 (0%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK     LDT++D V+PFLL +VIKG SAF+KVDILW  LP+ SKS +  +GEL L+
Sbjct: 837  VETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQ 896

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            VF+SE+C   K WN L+++ L+I DLIDWERS+PD++HD+   YGID A +YFL  L S 
Sbjct: 897  VFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSA 956

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            VS+ GK ILPEHL+L AD L+ TGEF+ L+A+G++ Q   A + SPFMQACFSNPG  F+
Sbjct: 957  VSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFV 1016

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +L+++AWGK   +GTG  FDI+YSGKG++  +P+DV+ +L+   +  
Sbjct: 1017 RAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSG 1076

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
               +++ +      M  K  A  L   DD   K C +   +     R   S +D+ KLS 
Sbjct: 1077 TPKVKVTLDE-DGGMDGKSLARRLDRLDDLNKKSCKSEWSITK--LRSFISFNDIKKLSQ 1133

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKHGNSRCFM 1090
            +L+ +L K +I+  L+EADK + M AL +HP   EK+G G PQ+I++G H ++ +SRCFM
Sbjct: 1134 SLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFM 1193

Query: 1091 LVRTDGTVVDFSYRKCVMGA 1150
            LVR+DG+V DFSYRKC+  A
Sbjct: 1194 LVRSDGSVEDFSYRKCMQHA 1213


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  343 bits (879), Expect = 1e-91
 Identities = 180/380 (47%), Positives = 250/380 (65%), Gaps = 1/380 (0%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK     LDT++D V+PFLL +VIKG SAF+KVDILW  LP+ SKS +  +GEL L+
Sbjct: 1050 VETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQ 1109

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            VF+SE+C   K WN L+++ L+I DLIDWERS+PD++HD+   YGID A +YFL  L S 
Sbjct: 1110 VFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSA 1169

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            VS+ GK ILPEHL+L AD L+ TGEF+ L+A+G++ Q   A + SPFMQACFSNPG  F+
Sbjct: 1170 VSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFV 1229

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +L+++AWGK   +GTG  FDI+YSGKG++  +P+DV+ +L+   +  
Sbjct: 1230 RAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSG 1289

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
               +++ +      M  K  A  L   DD   K C +   +     R   S +D+ KLS 
Sbjct: 1290 TPKVKVTLDE-DGGMDGKSLARRLDRLDDLNKKSCKSEWSITK--LRSFISFNDIKKLSQ 1346

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKHGNSRCFM 1090
            +L+ +L K +I+  L+EADK + M AL +HP   EK+G G PQ+I++G H ++ +SRCFM
Sbjct: 1347 SLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFM 1406

Query: 1091 LVRTDGTVVDFSYRKCVMGA 1150
            LVR+DG+V DFSYRKC+  A
Sbjct: 1407 LVRSDGSVEDFSYRKCMQHA 1426


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  334 bits (856), Expect = 6e-89
 Identities = 175/379 (46%), Positives = 240/379 (63%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK   I LD+V+D V+PFLLG+ I+G    +KVDILWN     + S+   SGEL L+
Sbjct: 990  VENSKNP-IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLR 1048

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S      + W +LL    +IM +IDW RSH DNI+   + YGIDA  +YF  SL   
Sbjct: 1049 VTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACA 1108

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
             SD GK+ILP+HL LVA+ LS +GEF+GLNA+G++ Q   AS+SSPF+QACF+NPGSCFI
Sbjct: 1109 TSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFI 1168

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +LD +AWG  + +GT G FD++YS KGH++ K VDV+ +L       
Sbjct: 1169 KAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKP 1228

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
             N I   +  Y     DK G+E        + +G     +    + R   +++D+ KL+ 
Sbjct: 1229 NNKIGTHLHKYSS---DKCGSEFRHKNGYALKEG-----KQWKTILRNFVTVNDIQKLTF 1280

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFML 1093
              R IL+K SI+E LSE+D+S ++  L++HPH +EK G GPQDI+VG HPK+ +SRCF +
Sbjct: 1281 ASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHI 1340

Query: 1094 VRTDGTVVDFSYRKCVMGA 1150
            +RTDGTV DFSYRKC++GA
Sbjct: 1341 IRTDGTVEDFSYRKCILGA 1359


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  334 bits (856), Expect = 6e-89
 Identities = 175/379 (46%), Positives = 240/379 (63%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK   I LD+V+D V+PFLLG+ I+G    +KVDILWN     + S+   SGEL L+
Sbjct: 1066 VENSKNP-IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLR 1124

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S      + W +LL    +IM +IDW RSH DNI+   + YGIDA  +YF  SL   
Sbjct: 1125 VTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACA 1184

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
             SD GK+ILP+HL LVA+ LS +GEF+GLNA+G++ Q   AS+SSPF+QACF+NPGSCFI
Sbjct: 1185 TSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFI 1244

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +LD +AWG  + +GT G FD++YS KGH++ K VDV+ +L       
Sbjct: 1245 KAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKP 1304

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
             N I   +  Y     DK G+E        + +G     +    + R   +++D+ KL+ 
Sbjct: 1305 NNKIGTHLHKYSS---DKCGSEFRHKNGYALKEG-----KQWKTILRNFVTVNDIQKLTF 1356

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFML 1093
              R IL+K SI+E LSE+D+S ++  L++HPH +EK G GPQDI+VG HPK+ +SRCF +
Sbjct: 1357 ASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHI 1416

Query: 1094 VRTDGTVVDFSYRKCVMGA 1150
            +RTDGTV DFSYRKC++GA
Sbjct: 1417 IRTDGTVEDFSYRKCILGA 1435


>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Glycine max]
          Length = 1458

 Score =  334 bits (856), Expect = 6e-89
 Identities = 175/379 (46%), Positives = 240/379 (63%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK   I LD+V+D V+PFLLG+ I+G    +KVDILWN     + S+   SGEL L+
Sbjct: 1067 VENSKNP-IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLR 1125

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S      + W +LL    +IM +IDW RSH DNI+   + YGIDA  +YF  SL   
Sbjct: 1126 VTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACA 1185

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
             SD GK+ILP+HL LVA+ LS +GEF+GLNA+G++ Q   AS+SSPF+QACF+NPGSCFI
Sbjct: 1186 TSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFI 1245

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +LD +AWG  + +GT G FD++YS KGH++ K VDV+ +L       
Sbjct: 1246 KAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKP 1305

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
             N I   +  Y     DK G+E        + +G     +    + R   +++D+ KL+ 
Sbjct: 1306 NNKIGTHLHKYSS---DKCGSEFRHKNGYALKEG-----KQWKTILRNFVTVNDIQKLTF 1357

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFML 1093
              R IL+K SI+E LSE+D+S ++  L++HPH +EK G GPQDI+VG HPK+ +SRCF +
Sbjct: 1358 ASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHI 1417

Query: 1094 VRTDGTVVDFSYRKCVMGA 1150
            +RTDGTV DFSYRKC++GA
Sbjct: 1418 IRTDGTVEDFSYRKCILGA 1436


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  333 bits (854), Expect = 1e-88
 Identities = 177/380 (46%), Positives = 244/380 (64%), Gaps = 1/380 (0%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK     LDT++D V+PFLL +VIKG SAF+KVDILW  LP+ SKS +  +GEL L+
Sbjct: 1050 VETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQ 1109

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            VF+SE+C   K WN L+++ L+I DLIDWERS+PD++HD+   YGID A +YFL  L S 
Sbjct: 1110 VFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSA 1169

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            VS+ GK ILPEHL+L AD L+ TGEF+ L+A+G++ Q   A + SPFMQACF+NPG  F+
Sbjct: 1170 VSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFV 1229

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +L+++AWGK   +GTG  FDI+YSGKG++L + ++V+ +LR   ++ 
Sbjct: 1230 RAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVD 1289

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
              N+++ +      M        L   DD   K C     L     R   S +D+ KLS 
Sbjct: 1290 TPNVKVTL-GKDGGMDGMSLVRRLDRLDDLDKKSC--KSELSFTKLRSYFSFNDIKKLSQ 1346

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKHGNSRCFM 1090
            +L+ +L K  I   L+EADK + M AL +HP   EK+G G P++I++G H +   SRCFM
Sbjct: 1347 SLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFM 1406

Query: 1091 LVRTDGTVVDFSYRKCVMGA 1150
            +VR+D TV DFSYRKC+  A
Sbjct: 1407 VVRSDDTVEDFSYRKCMQHA 1426


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  333 bits (854), Expect = 1e-88
 Identities = 177/380 (46%), Positives = 244/380 (64%), Gaps = 1/380 (0%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK     LDT++D V+PFLL +VIKG SAF+KVDILW  LP+ SKS +  +GEL L+
Sbjct: 742  VETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQ 801

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            VF+SE+C   K WN L+++ L+I DLIDWERS+PD++HD+   YGID A +YFL  L S 
Sbjct: 802  VFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSA 861

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
            VS+ GK ILPEHL+L AD L+ TGEF+ L+A+G++ Q   A + SPFMQACF+NPG  F+
Sbjct: 862  VSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFV 921

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +L+++AWGK   +GTG  FDI+YSGKG++L + ++V+ +LR   ++ 
Sbjct: 922  RAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVD 981

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
              N+++ +      M        L   DD   K C     L     R   S +D+ KLS 
Sbjct: 982  TPNVKVTL-GKDGGMDGMSLVRRLDRLDDLDKKSC--KSELSFTKLRSYFSFNDIKKLSQ 1038

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKHGNSRCFM 1090
            +L+ +L K  I   L+EADK + M AL +HP   EK+G G P++I++G H +   SRCFM
Sbjct: 1039 SLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFM 1098

Query: 1091 LVRTDGTVVDFSYRKCVMGA 1150
            +VR+D TV DFSYRKC+  A
Sbjct: 1099 VVRSDDTVEDFSYRKCMQHA 1118


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  328 bits (842), Expect = 3e-87
 Identities = 175/384 (45%), Positives = 244/384 (63%), Gaps = 1/384 (0%)
 Frame = +2

Query: 2    ISVAVEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGE 181
            I+VAV     + + LD+V+  ++PFLL + IKG    +KVDILW  LP  +KS    +GE
Sbjct: 1240 ITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGE 1299

Query: 182  LCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRS 361
            L L+V +S    +   W  L+N    IM LIDW RSHPDNIH   + +GIDA  +++  +
Sbjct: 1300 LYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHN 1359

Query: 362  LKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPG 541
            L S  SD GK+ILP+HL LVA+ LS +GEF+GLNA+G+++Q   AS+SSPF+QACFSNPG
Sbjct: 1360 LSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPG 1419

Query: 542  SCFIXXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGE 721
            S F+             NLDA+AWG  +P+GTGGQFDI+YS K  +++K VDV+ +L  E
Sbjct: 1420 SSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLL--E 1477

Query: 722  SSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSE-RLLNPVFRRDHSLDDV 898
            +S    + E+ IP  +K    K  ++  S        G T  E +    V R   + +D+
Sbjct: 1478 TSFNQMDQEINIPQSRKYSSGKCSSDFRSK-----NGGYTPKEPKQWKSVLRNFMTANDI 1532

Query: 899  VKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNS 1078
             +L+   R IL+K  I+E LSE DK  +M+ LH+HP   EK G+GPQ+I+VG HP+  +S
Sbjct: 1533 QRLTFDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDS 1592

Query: 1079 RCFMLVRTDGTVVDFSYRKCVMGA 1150
            RCF ++R DG+V DFSYRKC++GA
Sbjct: 1593 RCFFIIRKDGSVEDFSYRKCILGA 1616


>ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
            gi|561031869|gb|ESW30448.1| hypothetical protein
            PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  324 bits (831), Expect = 5e-86
 Identities = 169/383 (44%), Positives = 241/383 (62%)
 Frame = +2

Query: 2    ISVAVEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGE 181
            I+V +  +  + I L++V+D ++PF LG+ IKG    +KVDILWN     + S    SGE
Sbjct: 1058 ITVTIVENSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGE 1117

Query: 182  LCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRS 361
            L L+V V+ +  + + W +L+N   +IM +IDW RSHPDNI+ + + YGID A +Y+ +S
Sbjct: 1118 LYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKS 1177

Query: 362  LKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPG 541
            L S +SD GK+ILP+HL L+A+ +S +GEF+GLNA+G+++Q   AS+SSPF+QACFSNPG
Sbjct: 1178 LASAISDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPG 1237

Query: 542  SCFIXXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGE 721
              FI             +LDA+AWG    +GT G FDI+YS KGH++DK VDV+ +L   
Sbjct: 1238 RSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLLEAS 1297

Query: 722  SSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVV 901
                 N I         N   K G+E          +G     +    + R   +++D+ 
Sbjct: 1298 FDKPNNKIGFHA---HNNSSGKCGSEFRHKNGYAFKEG-----KQWKNILRNFVTVNDIQ 1349

Query: 902  KLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSR 1081
            KL+   R IL+K  I+E LSE D+S ++  L++HP  +EK+G GPQDI+VG HPK  +SR
Sbjct: 1350 KLTTASRCILNKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSR 1409

Query: 1082 CFMLVRTDGTVVDFSYRKCVMGA 1150
            CF +VRTDGTV DFSYRKC++ A
Sbjct: 1410 CFHIVRTDGTVEDFSYRKCILRA 1432


>ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
            gi|561031868|gb|ESW30447.1| hypothetical protein
            PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1463

 Score =  324 bits (831), Expect = 5e-86
 Identities = 169/383 (44%), Positives = 241/383 (62%)
 Frame = +2

Query: 2    ISVAVEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGE 181
            I+V +  +  + I L++V+D ++PF LG+ IKG    +KVDILWN     + S    SGE
Sbjct: 1057 ITVTIVENSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGE 1116

Query: 182  LCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRS 361
            L L+V V+ +  + + W +L+N   +IM +IDW RSHPDNI+ + + YGID A +Y+ +S
Sbjct: 1117 LYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKS 1176

Query: 362  LKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPG 541
            L S +SD GK+ILP+HL L+A+ +S +GEF+GLNA+G+++Q   AS+SSPF+QACFSNPG
Sbjct: 1177 LASAISDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPG 1236

Query: 542  SCFIXXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGE 721
              FI             +LDA+AWG    +GT G FDI+YS KGH++DK VDV+ +L   
Sbjct: 1237 RSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLLEAS 1296

Query: 722  SSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVV 901
                 N I         N   K G+E          +G     +    + R   +++D+ 
Sbjct: 1297 FDKPNNKIGFHA---HNNSSGKCGSEFRHKNGYAFKEG-----KQWKNILRNFVTVNDIQ 1348

Query: 902  KLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSR 1081
            KL+   R IL+K  I+E LSE D+S ++  L++HP  +EK+G GPQDI+VG HPK  +SR
Sbjct: 1349 KLTTASRCILNKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSR 1408

Query: 1082 CFMLVRTDGTVVDFSYRKCVMGA 1150
            CF +VRTDGTV DFSYRKC++ A
Sbjct: 1409 CFHIVRTDGTVEDFSYRKCILRA 1431


>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Glycine max]
          Length = 1455

 Score =  323 bits (829), Expect = 8e-86
 Identities = 173/379 (45%), Positives = 237/379 (62%)
 Frame = +2

Query: 14   VEISKGSLIPLDTVQDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLK 193
            VE SK   I LD+V+D V+PFLLG+ I+G    +KVDILWN     + S+   SGEL L+
Sbjct: 1067 VENSKNP-IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLR 1125

Query: 194  VFVSENCKSAKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKST 373
            V +S      + W +LL    +IM +IDW RSH DNI+   + YGIDA  +YF  SL   
Sbjct: 1126 VTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACA 1185

Query: 374  VSDIGKTILPEHLLLVADCLSVTGEFLGLNARGISKQMDLASISSPFMQACFSNPGSCFI 553
             SD GK+ILP+HL LVA+ LS +GEF+GLNA+G++ Q   AS+SSPF+QACF+NPGSCFI
Sbjct: 1186 TSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFI 1245

Query: 554  XXXXXXXXXXXXXNLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHMLRGESSLQ 733
                         +LD +AWG  + +GT G FD++YS    K+ K VDV+ +L       
Sbjct: 1246 KAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYS---EKVAKSVDVYELLEASFDKP 1302

Query: 734  GNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLDDVVKLSI 913
             N I   +  Y     DK G+E        + +G     +    + R   +++D+ KL+ 
Sbjct: 1303 NNKIGTHLHKYSS---DKCGSEFRHKNGYALKEG-----KQWKTILRNFVTVNDIQKLTF 1354

Query: 914  TLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHGNSRCFML 1093
              R IL+K SI+E LSE+D+S ++  L++HPH +EK G GPQDI+VG HPK+ +SRCF +
Sbjct: 1355 ASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHI 1414

Query: 1094 VRTDGTVVDFSYRKCVMGA 1150
            +RTDGTV DFSYRKC++GA
Sbjct: 1415 IRTDGTVEDFSYRKCILGA 1433