BLASTX nr result
ID: Akebia25_contig00023088
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00023088
(2215 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_783203.1| RNA-dependent RNA polymerase [Oyster mushroom s... 113 4e-22
gb|ACX43951.1| RNA-dependent RNA polymerase [Pleurotus ostreatus... 109 6e-21
ref|YP_002308578.1| polyprotein [Anagyris vein yellowing virus] ... 98 2e-17
ref|NP_041257.1| replicase [Ononis yellow mosaic virus] gi|13055... 96 5e-17
ref|NP_047920.1| replicase protein [Erysimum latent virus] gi|54... 96 9e-17
ref|NP_112029.1| RNA-dependant RNA polymerase [Banana mild mosai... 95 2e-16
ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9D... 94 3e-16
ref|YP_002048673.1| replicase-associated protein RP [Diascia yel... 92 1e-15
gb|ABG37965.1| putative replicase [Grapevine virus A] 91 2e-15
ref|YP_004293216.1| RNA polymerase [Grapevine berry inner necros... 90 5e-15
ref|YP_002308445.1| polyprotein [Plantago mottle virus] gi|59709... 89 8e-15
gb|ABH07008.1| putative replicase [Grapevine virus A] 89 8e-15
gb|AFV73358.1| 195 kDa replicase [Grapevine virus A] 89 1e-14
ref|YP_002308439.1| polyprotein [Scrophularia mottle virus] gi|5... 88 1e-14
ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|s... 87 4e-14
ref|YP_004464930.1| unnamed protein product [Bombyx mori Macula-... 86 7e-14
dbj|BAD35017.1| RNA-dependent RNA polymerase [Bombyx mori Macula... 85 2e-13
ref|YP_002308442.1| polyprotein [Nemesia ring necrosis virus] gi... 83 5e-13
gb|AHX22590.1| RNA-dependent RNA polymerase [Bombyx mori Macula-... 82 8e-13
gb|AEN25485.1| polyprotein, partial [Scaevola virus A] 81 2e-12
>ref|NP_783203.1| RNA-dependent RNA polymerase [Oyster mushroom spherical virus]
gi|28139759|gb|AAO26217.1| RNA-dependent RNA polymerase
[Oyster mushroom spherical virus]
Length = 1581
Score = 113 bits (282), Expect = 4e-22
Identities = 168/676 (24%), Positives = 274/676 (40%), Gaps = 55/676 (8%)
Frame = -1
Query: 2086 DCVAFLGVAGCGKTSAT---------VGY-LKSLDPESRRNARVVTHTEAMRADAKVSLD 1937
+ + G AGCGK+S +GY L + P + N + ++ +
Sbjct: 736 EVIYLAGTAGCGKSSGVADLVQRHGNLGYWLSVVSPLNDLNEEWTEKITGLSSEQRKIFK 795
Query: 1936 FPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTS 1757
E F P + V+FDEA + G LDL + +P V+ V++ GDP Q+
Sbjct: 796 THEKAMFAQPQV-----------VVFDEAQKLPGHYLDLYLAYHPDVELVILLGDPFQSG 844
Query: 1756 ARFPVPGTQSEFDP--SPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSV 1583
A PV +S P SP +A AT Y T S R+ + G+ +S ++
Sbjct: 845 A--PVTDQRSLLFPEMSPGRTLARHATFYLTDSWRVNPTVGQAWGIPVLHSTRSNVYWIR 902
Query: 1582 GPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDAT-GLEGAMLDASAYT 1406
G ++PV+ ++ N G QA+T+ G DF ++ T L A+ D + YT
Sbjct: 903 GINPDMPVIVSTVTAQNARRQYGEQAFTFSSCGGLDFPGYYQIVLTRELLSAVPDDAIYT 962
Query: 1405 ALTRSRTGIYVRLDAMDPSSSIRKLPTGSDIMNALVYALRAGNSATLTAPD-----SLVK 1241
A TRSR I V L+A+ P R S ++NAL + + D L+
Sbjct: 963 AFTRSRHDIAV-LNALSP-QEFRTACNNSRLLNALFNGVPLNGTYRDVIGDRIPGVPLLG 1020
Query: 1240 ACFYRHVSRCMPNLPWFANYGS---SLDASAFQSVVSPANYHV---VVEGPSCDAPPVD- 1082
H +R N GS +L+ S+++P V V P APP D
Sbjct: 1021 GFSLVHGTRLTTVADVLGNDGSKYDNLEPIMKASMLAPPPERVESDVSPVPLKHAPPNDE 1080
Query: 1081 --AMQVSGAP-VETYIPETHFVAKEAREVVSRRGV------TDQFKETAF----VNPH-- 947
AP ++ + T FV +E E +S G +D+ E A +N
Sbjct: 1081 WVPTYFGRAPHLKNDLNNTGFV-RENVEFLSPDGQMGRMFGSDRKPEDASRVDGLNDFFP 1139
Query: 946 VHRRGDTGTYMLSVDKRLKPATYESNLARMFSNPRLD--MCDEYDRL--VPDPPRWSPEK 779
+H+ D + +V KRL+ T + N + + L +CD + + +P W E
Sbjct: 1140 LHQSSDPALWGPTVPKRLRFGTEQGNRKELADSSFLGPMLCDAFRKSHNLPFDIPWDQEL 1199
Query: 778 HQMYVDRSTGEYMAKRTTEAVMSKLNSHDPD-RTGADIRITLKNQVIRKDEKRHKVEAI- 605
V+ + ++K + EA+ + DP R + LK Q+I K + K
Sbjct: 1200 FDRCVEDCAQKRLSK-SAEALNNLTRDQDPILRDNKKVLNFLKGQLINKLDAITKGSGAE 1258
Query: 604 ------PGQLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRM---SPGGFVAEYV 452
P Q+I Y PY+ +L ++ P + + Y M G + E+V
Sbjct: 1259 SFPTIKPAQMITTYTEEVNAAFGPYIRYLACKLREHSPDHVMHYGGMDLNDLGQWAREHV 1318
Query: 451 KRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVM 272
RT +++++D T +D C F+ ++R +PE I+ + L S G +
Sbjct: 1319 PSKRT--KSFTNDYTAYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKL 1376
Query: 271 ATMQNSGDRYTWALNS 224
M+ SG T+ N+
Sbjct: 1377 GIMRTSGQWCTYLFNT 1392
>gb|ACX43951.1| RNA-dependent RNA polymerase [Pleurotus ostreatus virus 1]
Length = 1160
Score = 109 bits (272), Expect = 6e-21
Identities = 167/676 (24%), Positives = 276/676 (40%), Gaps = 55/676 (8%)
Frame = -1
Query: 2086 DCVAFLGVAGCGKTSAT---------VGY-LKSLDPESRRNARVVTHTEAMRADAKVSLD 1937
+ + G AGCGK+S +GY L + P + N + ++ +
Sbjct: 329 EVIYLAGTAGCGKSSGVADLVQRHGNLGYWLSVVSPLNDLNEEWTEKITGLSSEQRKIFK 388
Query: 1936 FPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTS 1757
E F P + V+FDEA + G LDL + +P V+ V++ GDP Q+
Sbjct: 389 TQEKAMFAQPQV-----------VVFDEAQKLPGHYLDLYLAYHPDVEPVILLGDPFQSG 437
Query: 1756 ARFPVPGTQSEFDP--SPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSV 1583
A PV +S P SP +A AT Y T S R+ + G+ +S ++
Sbjct: 438 A--PVTNQRSLLFPEMSPGRTLARHATFYLTDSWRVNPTVGQAWGIPVLHSTRSNVYWIR 495
Query: 1582 GPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDAT-GLEGAMLDASAYT 1406
G ++PV+ ++ N G QA+T+ G DF ++ T L A+ D + YT
Sbjct: 496 GINPDMPVIVSTVTAQNARRQYGEQAFTFSSCGGLDFPGYYQIVLTRELLSAVPDDAIYT 555
Query: 1405 ALTRSRTGIYVRLDAMDPSSSIRKLPTGSDIMNALVYALRAGNSATLTAPD-----SLVK 1241
A TRSR I V L+A+ P R S ++NAL+ + + D L+
Sbjct: 556 AFTRSRQDIGV-LNALSP-QEFRTACNNSRLLNALLNGVPLNGTYRDVIGDRIPGVPLLG 613
Query: 1240 ACFYRHVSRCMPNLPWFANYGS---SLDASAFQSVVSPANYHV---VVEGPSCDAPPVD- 1082
H +R GS +L+ S+++P V V P APP D
Sbjct: 614 GFSLVHGTRLTTVADVLGKDGSKYDNLEPIMKASMLAPPPERVESDVSPVPLKHAPPKDE 673
Query: 1081 --AMQVSGAP-VETYIPETHFVAKEAREVVSRRGV------TDQFKETAF----VNPH-- 947
AP ++ + T FV +E E +S G +D+ E A +N
Sbjct: 674 WVPTYFGRAPHLKKDLNNTGFV-RENVEFLSPSGQMGRMFGSDRKPEDASRVDGLNDFFP 732
Query: 946 VHRRGDTGTYMLSVDKRLKPATYESNLARMFSNPRLD--MCDEYDRL--VPDPPRWSPEK 779
+H+ D + +V KRL+ T + N + + L +CD + + +P W E
Sbjct: 733 LHQSSDPALWGPTVAKRLRFGTEQGNRQELADSSFLGPMLCDAFRKSHNLPFDIPWDQEL 792
Query: 778 HQMYVDRSTGEYMAKRTTEAVMSKLNSHDPD-RTGADIRITLKNQVIRKDE---KRHKVE 611
V+ + ++K + EA+ + DP R + LK Q+I K + K E
Sbjct: 793 LDRCVEDCAQKRLSK-SAEALNNLTRDQDPILRDKKKVLNFLKGQLINKLDAITKGSGAE 851
Query: 610 AI----PGQLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRM---SPGGFVAEYV 452
++ P Q+I Y PY +L ++ P + + Y M G + ++V
Sbjct: 852 SVPTIKPAQMITTYTEDVNAAFGPYTRYLACKLREHSPDHVMHYGGMDLKDLGQWARKHV 911
Query: 451 KRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVM 272
RT +++++D T +D C F+ ++R +PE I+ + L S G +
Sbjct: 912 PSRRT--KSFTNDYTAYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKL 969
Query: 271 ATMQNSGDRYTWALNS 224
M+ SG T+ N+
Sbjct: 970 GIMRTSGQWCTYLFNT 985
>ref|YP_002308578.1| polyprotein [Anagyris vein yellowing virus]
gi|59709797|gb|AAW88529.1| polyprotein [Anagyris vein
yellowing virus]
Length = 1769
Score = 97.8 bits (242), Expect = 2e-17
Identities = 167/796 (20%), Positives = 312/796 (39%), Gaps = 86/796 (10%)
Frame = -1
Query: 2173 LESRADQRVLQSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRN 1994
+ ++ + L LD++ID TVD + G GCGK+ LK+ + ++
Sbjct: 866 ISDKSPRAKLFELDSMIDVSFPR----TVDVIHIAGFPGCGKSHPMQKLLKT---KPFKH 918
Query: 1993 ARVVTHTEAMRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVI 1814
R+ T +R++ K LD PE + L T + L + S+ VI DE + G LDL++
Sbjct: 919 FRLSVPTNELRSEWKRDLDLPESESWRLCTWETALFKTSSILVI-DEVYKLPRGYLDLIL 977
Query: 1813 LCNPLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADT 1634
L +P + ++ GDP Q P + + PS ++ Y ++R K +A+
Sbjct: 978 LSDPSIQLAIILGDPLQGEYHSTHPSSSNARLPSETLRLSKYIDCYCWWTYRCPKVVANL 1037
Query: 1633 LGVYTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEV 1454
GV T + G I ++ LP + S N + + G A T QG + + V +
Sbjct: 1038 FGVKTFSDEEGFIHSAITHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSSPVTI 1097
Query: 1453 DATGLEGAMLDASAYTALTRSRTGI------------------------YVRLDAMDPSS 1346
+ + ALTRSR G+ +D +
Sbjct: 1098 LLDRHSTLLSPHNGLVALTRSRKGVIFIGNMYQASGHFGTSYMFTRALTQTPIDMISAFP 1157
Query: 1345 SIRKLPTGSDIMNALVYALRAGNSATLTAPDSLVKACFYRHVSRCMPNLPWFANYGSS-- 1172
LP + + + + L AGN T+++P V + +H+ R P+ P Y
Sbjct: 1158 IFHTLPLMHEPITSRRHRLVAGN--TVSSP--TVNSWALQHLGRLPPHFP--VTYDKDVL 1211
Query: 1171 -----LDASAFQSVVSPAN-------YHVVVEGPSCDAPPVDAMQVSGAPV------ETY 1046
L +SA + +S + H +E + A+ ++ +P+ E++
Sbjct: 1212 LSNPILQSSAPEQRLSTLHLPPTRLPLHRDIESCNPSTSSCQALDLTPSPISHGFYGESF 1271
Query: 1045 IP-ETHFVA---KEAREVVSRRGVTDQFK----------ETAFVNPHVHRRGDTGTYML- 911
HF+ + +EV+ ++QF + + + H+ T ++
Sbjct: 1272 EELAAHFMPAHDPDLKEVLVSDQRSNQFPYLDVPFSLSCQPSSLLAASHKPAKDPTLLIN 1331
Query: 910 SVDKRLK------PATYESNLARMFSNPRLDMCDEYDRLVPDPPRWSPEKHQMYVDRSTG 749
S+ KRL+ P T+ N + C Y R +P P ++ +
Sbjct: 1332 SIKKRLRFRKSGSPYTFTPNDLLLGVMLFESWCKAYCR---NPKEVVPFNPALFAECILN 1388
Query: 748 EY--MAKRTTEAVMSKLNSHDPDRTGADIRITLKNQVIRKDEKRHKVE--AIPG------ 599
EY ++ +T A+++ + DPD +RI K+Q HKV +I G
Sbjct: 1389 EYAQLSSKTQSAIVANASRSDPDWRYTCVRIFAKSQ--------HKVNDGSIFGGWKACQ 1440
Query: 598 --QLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQN 425
L+H++ + Y ++ P F++ ++++ + + G +
Sbjct: 1441 TLALMHDFVVLSLGPVKKYQRIIDHYDRP----GFIYSHCGKTPSDLSKWSQEYLRGTEY 1496
Query: 424 YSSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDR 245
+D T +D F+ +RR +P+ I+ ++ + + +Q G + M+ +G+
Sbjct: 1497 ICNDYTSFDQSQHGEAVIFETLKMRRVSIPDCLIELHMYLKTNVSTQFGPLTCMRLTGEP 1556
Query: 244 YTWALNSVRRAVVTSLVCSITPEDTVAVNGDDAAVDRHCDALPFPDSPW---------EF 92
T+ N+ V SI+ + + V+GDD+ + C LP + W F
Sbjct: 1557 GTYDDNTDYNLAVLFSQYSISSQ-PIMVSGDDSVI---C-GLPPTNPSWAKVSELLHLSF 1611
Query: 91 KNINGPLVEFSGFTIG 44
K P F G+ +G
Sbjct: 1612 KTERTPKPLFCGYYVG 1627
>ref|NP_041257.1| replicase [Ononis yellow mosaic virus]
gi|130553|sp|P20127.1|POLR_OYMV RecName: Full=RNA
replicase polyprotein gi|332574|gb|AAA46796.1| replicase
protein (RP) [Ononis yellow mosaic virus]
Length = 1776
Score = 96.3 bits (238), Expect = 5e-17
Identities = 169/798 (21%), Positives = 298/798 (37%), Gaps = 88/798 (11%)
Frame = -1
Query: 2167 SRADQRVLQSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNAR 1988
+++ + L LDA ID + D + G GCGK+ K L + R+ R
Sbjct: 870 NKSPKMKLLELDATIDVSFPRK----CDVIHIAGFPGCGKSHPIQ---KLLQTPAFRHFR 922
Query: 1987 VVTHTEAMRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILC 1808
+ T +R++ K L+ PE + L T + L + S+ ++ DE + G LDL++L
Sbjct: 923 LSVPTNELRSEWKRDLNLPESEVWRLCTWETALFK-SSNILVVDEIYKLPRGYLDLILLA 981
Query: 1807 NPLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLG 1628
+P + V++ GDP Q P + + S ++ Y ++R K +AD G
Sbjct: 982 DPSIQLVIMLGDPLQGEYHSSHPSSSNSRLESETTRLSKYIDCYCWWTYRCPKAVADLFG 1041
Query: 1627 VYTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDA 1448
V T NS G I + LP + S N + + G A T QG + V V
Sbjct: 1042 VKTFNSNEGFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLL 1101
Query: 1447 TGLEGAMLDASAYTALTRSRTGIY------------------------VRLDAMDPSSSI 1340
+ +A ALTRSR+GIY + +D M
Sbjct: 1102 DRHSLLITPQTALVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMMSAFPLF 1161
Query: 1339 RKLPTGSDIMNALVYALRAGNSATLTAPDSLVKACFYRHVSRCMPNLPWFANYGSSLDAS 1160
LP + + + + L AG++ +L P S + H P++P S D
Sbjct: 1162 HTLPLIHEPIRSRRHRLVAGHTPSLHVPPSNK----WPHRLHLPPHIP----TSHSKDVI 1213
Query: 1159 AFQSVVS--------------PANYHVVVEGPSCDAPPVDAMQVSGAPV---ETYIPET- 1034
+V+ P + + SC+ V S + V ++ E+
Sbjct: 1214 LAHGIVASNAPERRLTTLHLPPTRLPLHFDLESCNPSTVSTSSTSNSEVPFTHAFLGESF 1273
Query: 1033 -----HFVA---KEAREVVSRRGVTDQF-----------KETAFVNPHVHRRGDTGTYML 911
HF+ + +EV + QF + ++ + D +
Sbjct: 1274 EELAAHFLPAHDPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIF 1333
Query: 910 SVDKRLK------PATYESNLARMFSNPRLDMCDEYDRLVPDPPRWSPEKHQMYVDRSTG 749
S+ KRL+ P + N + + C + R ++P + +
Sbjct: 1334 SISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEY 1393
Query: 748 EYMAKRTTEAVMSKLNSHDPDRTGADIRITLKNQVIRKDEKRHKVE--AIPGQ------- 596
++ +T ++S + DPD +RI K+Q HKV +I G
Sbjct: 1394 AQLSSKTQATIVSNASRSDPDWRYTVVRIFAKSQ--------HKVNDGSIFGSWKACQTL 1445
Query: 595 -LIHEYDISCTLGD-SPYVLFLEDEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNY 422
L+H++ + TLG Y ++ P NF++ ++ + + G
Sbjct: 1446 ALMHDF-VILTLGPVKKYQRIIDHYDRP----NFIYTHCGKTPSELSAWSHSFLKGDAYI 1500
Query: 421 SSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRY 242
+D T +D F++ + R G+P I I+ + + +Q G + M+ +G+
Sbjct: 1501 CNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTGEPG 1560
Query: 241 TWALNS-VRRAVVTSLVCSITPEDTVAVNGDDAAVDRHCDALPFPDSPW---------EF 92
T+ N+ AV+ S + + + V+GDD+ + H P + W F
Sbjct: 1561 TYDDNTDYNLAVIFSQY--VISDHPIMVSGDDSVICGH----PPINPNWPAVEKLLHLRF 1614
Query: 91 KNINGPLVEFSGFTIGNT 38
K L F G+ +G T
Sbjct: 1615 KTEETSLPLFCGYYVGPT 1632
>ref|NP_047920.1| replicase protein [Erysimum latent virus]
gi|548563|sp|P35928.1|POLR_ELV RecName: Full=RNA
replicase polyprotein gi|3892232|gb|AAC80555.1| replicase
protein [Erysimum latent virus]
Length = 1748
Score = 95.5 bits (236), Expect = 9e-17
Identities = 172/747 (23%), Positives = 289/747 (38%), Gaps = 80/747 (10%)
Frame = -1
Query: 2092 TVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTEAMRADAKVSLDFPEFRGFN 1913
TVD + G AGCGKT LK+ N RVVT T +R++ K + P +
Sbjct: 866 TVDLIHLSGFAGCGKTHPIQQLLKT---PHFHNFRVVTPTTNLRSEWKSDMALPAHHNWR 922
Query: 1912 LPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTSARFPVPGT 1733
T S L + + VI DE + G LDL ++ +P V V++ GDP Q +
Sbjct: 923 FSTWESALLKHAEILVI-DEIYKLPRGYLDLSLIADPTVKLVILLGDPLQGEYHSTSAHS 981
Query: 1732 QSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVVT 1553
+ S + + Y S+R+ K +A + N G I ++ +
Sbjct: 982 SNLRLSSEIPRLLPFIDYYCYWSYRVPKCVAKLFSLPCFNPSEGFIKTTLDFFPSANNLV 1041
Query: 1552 ASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGIYV 1373
S V++ A G A T QG F + + ++ ALTRSR+G+Y
Sbjct: 1042 NSHSVVHISEACGWNAVTISSSQGCTFSDPAFIHLDRNTALLSPSNCLVALTRSRSGVYF 1101
Query: 1372 R-----LDAMDPSSSIRKLPTGS------DIMNALVYALRAGNSATLTAPDSLVKACFYR 1226
+ L ++ SS + L D +V+ L +A LT S ++ F
Sbjct: 1102 KGDFTFLSSLSGSSRMFSLAYSGQPIHLPDFFPEIVFQLNM-ITAPLTKRSSSFRSGFQP 1160
Query: 1225 HVSR-----------CMPNLPWF----------ANYGSSLDASAFQSVVSPANYHVVVEG 1109
++S C P++P A YG SL+ + P +
Sbjct: 1161 NISSAPKIPAPPNLPCPPHIPTNYSKDVIVNNQALYGESLERRLSVLHLPPTRM-TLHSD 1219
Query: 1108 PSCDAPPVDAMQVSGAPVET-----------YIPETHFVAK---EAREVVSRRGVTDQFK 971
+ AP + Q S PV + + HF+ E +E+ + + QF
Sbjct: 1220 INITAPSSSSFQPSDEPVPSDHTAVYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFP 1279
Query: 970 ----------ETAFVNPHVHRRGDTGTYM-LSVDKRLK----PATYESNLARMFSNPRL- 839
+T+ + H+ G T + S+ KRL+ A Y+ + F L
Sbjct: 1280 WLNLDFHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLY 1339
Query: 838 -DMCDEYDRLVPDPPRWSPEKHQMYVDR-STGEY--MAKRTTEAVMSKLNSHDPDRTGAD 671
C Y R DP P ++++ + +Y ++ +T +++ + DPD
Sbjct: 1340 RSWCQVYRR---DPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVANASRSDPDWRHTF 1396
Query: 670 IRITLKNQVIRKDEKRHKVE--AIPGQ--------LIHEYDISCTLGDSPYVLFLEDEII 521
++I K+Q HKV +I G L+H+Y I TLG L D++
Sbjct: 1397 VKIFAKSQ--------HKVNDGSIFGPWKACQTLALMHDYVI-LTLGPVKKYQRLFDQL- 1446
Query: 520 PAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNYS----SDVTRWDVGCDASLQNFDAHVL 353
PS+ ++ +P ++RW + S +D T +D F+ +
Sbjct: 1447 -ERPSHIYYHAGNTPHD-----LRRWCSKHLETSHCTTNDYTAFDQSQHGEAVVFEVLKM 1500
Query: 352 RRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRYTWALNSVRRAVVTSLVCSITPED 173
RR +PE I +H + + +Q G + M+ +G+ T+ N+ V +L +
Sbjct: 1501 RRLSIPENLISLHVHLKTNVETQFGPLTCMRLTGEPGTYDDNTDYNLAVLNLQYDLRKTP 1560
Query: 172 TVAVNGDDAAVDRHCDALPFPDSPWEF 92
T+ V+GDD+ + P S W F
Sbjct: 1561 TL-VSGDDS----YLSGTLSPRSNWPF 1582
>ref|NP_112029.1| RNA-dependant RNA polymerase [Banana mild mosaic virus]
gi|13507175|gb|AAK28489.1|AF314662_1 RNA-dependant RNA
polymerase [Banana mild mosaic virus]
Length = 1771
Score = 94.7 bits (234), Expect = 2e-16
Identities = 73/291 (25%), Positives = 143/291 (49%), Gaps = 7/291 (2%)
Frame = -1
Query: 988 VTDQFKETAFVNPHVHRRGDTGTYMLSVDKRLKPATYESNLARMFSNPRL--DMCDEYDR 815
+T+Q ++ + P HR DT T++++V KRL + + R N R +M D +++
Sbjct: 1360 ITNQAQKFESIYPR-HRNSDTVTFLMAVKKRLSFSQPRKEMQRYLMNKRKGEEMADAFEK 1418
Query: 814 LVPDPPRWSPEKHQMYVDRSTGEYMAKRTTEAVMSKLNSHDPDRTGADIRIT-----LKN 650
VP +S EK +++ E+ +K+ E + + +H R+ + +I +K+
Sbjct: 1419 FVPIKSNFSREK---FIEAKM-EFESKKL-EKSKATIENH-AQRSNREWKIDEAMIFMKS 1472
Query: 649 QVIRKDEKRHKVEAIPGQLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRMSPGG 470
Q+ K EKR VEA GQ + + +PYV ++E + P NF + +
Sbjct: 1473 QLCTKFEKRF-VEAKAGQTLACFSHIVLCRFAPYVRYMEKIVNENLPKNFYIHNGKNFDD 1531
Query: 469 FVAEYVKRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSR 290
+ +YVK+ G+ SD +D D+ + F+ ++RR +P+ +I ++ + + R
Sbjct: 1532 -LNDYVKKNNFSGRCIESDYEAFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLR 1590
Query: 289 SQHGVMATMQNSGDRYTWALNSVRRAVVTSLVCSITPEDTVAVNGDDAAVD 137
S+ G MA M+ +G+ T+ N++ V T + + ++ + GDD ++
Sbjct: 1591 SKLGNMAIMRFTGEAATFLFNTMANIVFTIMAYDLKGDECILFAGDDMCMN 1641
>ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9DRA1.1|RDRP_BOTVF
RecName: Full=RNA replication protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase; Includes: RecName: Full=Methyltransferase
gi|10801178|gb|AAG23416.1|AF238884_2 replicase [Botrytis
virus F]
Length = 1896
Score = 94.0 bits (232), Expect = 3e-16
Identities = 76/256 (29%), Positives = 115/256 (44%), Gaps = 6/256 (2%)
Frame = -1
Query: 2143 QSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESR---RNARVVTHT 1973
+ LDA IDS+ + +V + F G+ G GK+ + + L E++ + R+VT T
Sbjct: 1034 EQLDAYIDSWAVNGFNRSVHVIYFCGLPGTGKSRRCMKMTERLLKENKYLAQTVRIVTPT 1093
Query: 1972 EAMRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPV-IFDEAGRYWGGTLDLVILCNPLV 1796
+ +R L P +++ T + + +PS GPV I DE G+ G L+ V+ NP V
Sbjct: 1094 DNLRNSVARQLKPPTESSYSVQTYETPIRQPSLGPVLIVDEYGKMPAGWLETVLFLNPRV 1153
Query: 1795 DRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTT 1616
V+ DP Q R +P PS A+A A Y S R G+A LG+ TT
Sbjct: 1154 QMVIFTADPTQGIFRTRIPDAYCCRIPSSTEAIASYAHEYRRVSDRPAPGVARALGLPTT 1213
Query: 1615 NSVVGHITHSVGPKLELPVVTASPRYVNVL--SAAGRQAYTYGGVQGKDFCTDVEVDATG 1442
+ G I S +L + +T P + G + YTY QG+ F ++ G
Sbjct: 1214 SRRPGQIETST--ELNVDWITVRPEGERAAWHNTWGGKVYTYATCQGETFHRAYQMVING 1271
Query: 1441 LEGAMLDASAYTALTR 1394
D + ALTR
Sbjct: 1272 NTRFWDDRDLFAALTR 1287
Score = 71.6 bits (174), Expect = 1e-09
Identities = 58/274 (21%), Positives = 117/274 (42%), Gaps = 5/274 (1%)
Frame = -1
Query: 943 HRRGDTGTYMLSVDKRLKPATYESNLARMFSNPRL---DMCDEYDRLVPDPPRWSPEK-- 779
HR D T ++ KRL+ + +N R + ++ ++ + + R +P P +
Sbjct: 1496 HRGDDKATANITYAKRLRFSQRAAN-ERSIAATKVAGSELFEAFTRAIPLPQETFNDSLL 1554
Query: 778 HQMYVDRSTGEYMAKRTTEAVMSKLNSHDPDRTGADIRITLKNQVIRKDEKRHKVEAIPG 599
+ + T ++ + +++ DP + I++ +K Q ++K EK +A G
Sbjct: 1555 EECRTENDT-VHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQTVKKLEKMGS-DATAG 1612
Query: 598 QLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNYS 419
Q I + L PY +++ I P + + R + F W ++
Sbjct: 1613 QSIASFRAEVLLAWGPYARYIDRRIRALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTD 1672
Query: 418 SDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRYT 239
D T +D DA+ NF+ ++RR P I++++ + S S G +A M+ SG+ +T
Sbjct: 1673 GDYTAYDASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASITSHFGPLAIMRFSGEVWT 1732
Query: 238 WALNSVRRAVVTSLVCSITPEDTVAVNGDDAAVD 137
+ N++ T + P GDD +++
Sbjct: 1733 YLFNTLGNIAFTYAKYEV-PSVAQVYGGDDKSIN 1765
>ref|YP_002048673.1| replicase-associated protein RP [Diascia yellow mottle virus]
gi|194295001|gb|ACF40325.1| replicase-associated protein
RP [Diascia yellow mottle virus]
Length = 1790
Score = 92.0 bits (227), Expect = 1e-15
Identities = 169/776 (21%), Positives = 294/776 (37%), Gaps = 84/776 (10%)
Frame = -1
Query: 2215 ASRLVSDLR-------AHPSVLESRADQRVLQSLDAVIDSYRASRRTVTVDCVAFLGVAG 2057
A LVS+++ + S R+ ++ L LDA ID VD + G G
Sbjct: 869 AKNLVSNMKNGFDGITSQLSESSGRSPKQKLLELDATIDVAFPRE----VDVIHIAGFPG 924
Query: 2056 CGKTSATVGYLKSLDPESRRNARVVTHTEAMRADAKVSLDFPEFRGFNLPTLASVLTEPS 1877
CGK+ K L ++ R+ R+ T +R + K + PE + L T + L + S
Sbjct: 925 CGKSHPVQ---KLLQTKAFRHFRLSVPTNELRTEWKSDMSLPESEIWRLCTWETSLFK-S 980
Query: 1876 TGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAV 1697
+ ++ DE + G LDL +L +P V++ GDP Q P + + S + +
Sbjct: 981 SSILVIDEIYKLPRGYLDLALLADPSTSLVILLGDPLQGEYHSSHPSSSNNRLESETSRL 1040
Query: 1696 ALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAA 1517
+ Y ++R + +AD GV T N+ G I + LP + S +
Sbjct: 1041 SKYIDCYCWWTYRCPRAVADLFGVKTFNTEQGFIRGELSHPQGLPNLVNSIATATTMQNL 1100
Query: 1516 GRQAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGI------YVRLDAMD 1355
G A T QG + + + + + + ALTRSR GI Y
Sbjct: 1101 GHHALTISSSQGMTYSSPTTILLDRHSTLLSPQNCFVALTRSRKGIIFIGNMYQASGYFG 1160
Query: 1354 PSSSIRKLPTGS--DIMNA--------LVYALRAGNSATLTAPDSL---VKACFYRHVSR 1214
S + TGS D+M A L++ L A D L R+ R
Sbjct: 1161 TSYMFTQALTGSPVDLMCAFPLYHTLPLIFDPIKSRRQRLVAGDPLPISTSESAIRNYGR 1220
Query: 1213 CMPNLPWFANYGSSLDASAFQSVVSPANYHVVVEGPSCDAP----PVDAMQVSGAPVETY 1046
P++P +Y S+ Q V S + P+ P P+ + AP E
Sbjct: 1221 LPPHIP--TDYAKDCFVSS-QVVFSEGEDRTL---PTLHLPPSRLPLHLLTEPAAPSEVL 1274
Query: 1045 IPET---------------------HFVA---KEAREVVSRRGVTDQFK----------E 968
+ ET HF+ E +E++ + QF +
Sbjct: 1275 LSETEPSKSPITLALLGESFEELAAHFLPAHDPELKEIIFADQSSSQFPFLDVPFELSCQ 1334
Query: 967 TAFVNPHVHRRGDTGTYML-SVDKRLK------PATYESNLARMFSNPRLDMCDEYDRLV 809
+ + HR T ++ S+ KRL+ P SN + + +C ++R
Sbjct: 1335 PSSLLAASHRPASDPTLLVSSIKKRLRFRPSDCPYFISSNDILLGQHLFNSLCRAFNRSP 1394
Query: 808 PDPPRWSPEKHQMYVDRSTGEYMAKRTTEAVMSKLNSHDPDRTGADIRITLKNQVIRKDE 629
+ + P + + ++ +T +++ + DPD +RI K Q
Sbjct: 1395 LEVIPFDPVLFAECIALNEYAQLSSKTKATIVANASRSDPDWRFTAVRIFAKAQ------ 1448
Query: 628 KRHKVE--AIPGQ--------LIHEYDISCTLGD-SPYVLFLEDEIIPAFPSNFLFYRRM 482
HKV +I G L+H+Y + TLG Y L+ + PS+ +
Sbjct: 1449 --HKVNDGSIFGSWKACQTLALMHDY-VIMTLGPVKKYQRILDHQ---DRPSHIYTHCGK 1502
Query: 481 SPGGFVAEYVKRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRR 302
+P ++ + +++ G + +D T +D + +RR +P+ IQ +H +
Sbjct: 1503 TPAQ-LSSWCQKFSLDGPSLCNDYTSFDQSQHGEAVVLECLKMRRCSIPDNLIQLHLHLK 1561
Query: 301 LSSRSQHGVMATMQNSGDRYTWALNSVRRAVV--TSLVCSITPEDTVAVNGDDAAV 140
+ +Q G + M+ +G+ T+ N+ V + TP V+GDD+ +
Sbjct: 1562 TNISTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYQMGATP---CMVSGDDSVI 1614
>gb|ABG37965.1| putative replicase [Grapevine virus A]
Length = 1710
Score = 91.3 bits (225), Expect = 2e-15
Identities = 143/608 (23%), Positives = 236/608 (38%), Gaps = 35/608 (5%)
Frame = -1
Query: 1867 VIFDEAGRYWGGTLDLVI-LCNPLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVAL 1691
++ DE G G +DLVI + +P +V+ GDP Q+S E + +
Sbjct: 991 IVIDEIGLLPPGYIDLVISVFHP--STLVLLGDPLQSSYHSKRDNVILEASQEDVFSRIK 1048
Query: 1690 RATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAAGR 1511
A Y SHR+ K IT + PV+ A+ R + ++ +G
Sbjct: 1049 GALPYLCYSHRLPKNCKIFEIECMGGEAEKRITFRSKRGKDEPVICAT-RAMREMNGSGW 1107
Query: 1510 QAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGIYVRLDAM--------D 1355
YT QG F T + + D A TRSR I + +D
Sbjct: 1108 --YTVSETQGLSFKTCM-IQLCEHWAKKEDEDVMVAFTRSRGEIAISVDKKLKEVLLRTS 1164
Query: 1354 PSSSIRKLPTGSDIMNALVYALRAGNSATLTAPDSLVKACFYRHVSRCMPNLPWFANYGS 1175
S +RK+ +G + + AL + P++LV R S +Y
Sbjct: 1165 KSELLRKILSGETYRRSSIIALVKKH-----IPEALVVFEENRLASN--------VDYEE 1211
Query: 1174 SLDASAFQSVVSPANYHVVVEGPSCDAPPVDAMQVSGAPVETYIPETHFV---------A 1022
L + + + E + P V+ P+ T++P + + A
Sbjct: 1212 RLAGDPYLKSLLSLYEDIEEEEVEIEEP------VALEPIRTHLPLSEKLNELIPFDLKA 1265
Query: 1021 KEAREVVSRRGVTDQFKETAF----VNPHVHRR-------GDTGTYMLSVDKRLKPATYE 875
KE RE + G T+Q E + NP H+ DT T+M+SV KRL+ +YE
Sbjct: 1266 KEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYE 1325
Query: 874 SNLARMFSNPRLDMCDEYDRLVPDPPRWSPEKHQMYVDRSTGEYMAKRTTEAVMSKLNSH 695
N + S + + ++ + +W + +++ E+M KR ++ + + H
Sbjct: 1326 GNRRKYLSCHGIGR--QMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSA-ALIEQH 1382
Query: 694 ----DPDRTGADIRITLKNQVIRKDEKRHKVEAIPGQLI--HEYDISCTLGDSPYVLFLE 533
DPD ++I LK Q K EKR V+A GQ I + + C G P + E
Sbjct: 1383 SGRSDPDWPSNYLKIFLKQQTCTKMEKRG-VDAKAGQTIACFAHSVLCRFG--PLLRQTE 1439
Query: 532 DEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVL 353
P N + Y + + + ++ K W G SD +D D + + + VL
Sbjct: 1440 KAFRELLPENVMIYSQKNYMD-LDKWSKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVL 1498
Query: 352 RRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRYTWALNSVRRAVVTSLVCSITPED 173
R PE IQ + +L S G +A M+ SG+ T+ N++ V + + +
Sbjct: 1499 RFFLWPEEMIQEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLDKNT 1558
Query: 172 TVAVNGDD 149
+ GDD
Sbjct: 1559 PICFAGDD 1566
>ref|YP_004293216.1| RNA polymerase [Grapevine berry inner necrosis virus]
gi|325910825|dbj|BAB47271.2| RNA polymerase [Grapevine
berry inner necrosis virus]
Length = 1867
Score = 89.7 bits (221), Expect = 5e-15
Identities = 146/630 (23%), Positives = 242/630 (38%), Gaps = 57/630 (9%)
Frame = -1
Query: 1867 VIFDEAGRYWGGTLDLVIL----CNPLVDR-VVVNGDPCQTSARFPVPGTQSEFDPSPLA 1703
+I DE + G LDL++L N + R + + GDP Q + SE D + L
Sbjct: 1113 IILDEVTLFPNGYLDLLMLKMSHYNNIKSRHITLVGDPLQANY-------YSEKDCNLLG 1165
Query: 1702 AVALRAT-----RYATQSHRIFKGLADTLGVYTTNSVVGHITH---------------SV 1583
V + + RY QS RI + +A+ GVY NS + + H S
Sbjct: 1166 NVRMIDSVFPDVRYIYQSFRIPQNVANRFGVYDKNSHLPYDNHGTFYCDMSSARKHASSF 1225
Query: 1582 GPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAML-DASAYT 1406
G K+E+ V+ AS S R TYG QG F D + + E + D Y
Sbjct: 1226 GAKIEI-VLVASELEKKYFSEQVR-CITYGESQGLTF--DFGLISLSEESRLCSDNHIYV 1281
Query: 1405 ALTRSRTGI----YVRLDAMDPSSSIRKLPTGS--DIMNALVYALRAGNSATLTAPDSLV 1244
ALTR + G R D S++ G ++ ++L + LT D
Sbjct: 1282 ALTRFKKGFGFFQNFRGDLKSYKSNLGSKLLGRYINLSDSLKPFMERMLDINLTFLDDRD 1341
Query: 1243 KACFYRHVSRCMPNLPWFANYGSSLDASAFQSVVSPANYHVVVEGPSCDAPPVDAMQVSG 1064
++ PW F+ C V +++ +G
Sbjct: 1342 NVGSGNNIEEKTAGDPWLKGLLDLQQTEEFEE---------------CSLQEVISLESTG 1386
Query: 1063 A---PVETYIPETHFV-AKEARE----------------VVSRRGVTDQFKETAFVNPHV 944
P+ + E + ++E+RE V +R + F E V
Sbjct: 1387 KVHLPLASLNDEFESIRSRESREFKCLNFDWSMQFEDCGVKLKRSLNGNFSENFSAIYPV 1446
Query: 943 HRRGDTGTYMLSVDKRLKPATYESNLARMFSNPRLD--MCDEYDRLVPDPPRWSPEKHQM 770
H+ D T++ +V KRL+ + NL + + D + + +P P EK M
Sbjct: 1447 HQACDELTFLAAVKKRLRFSNPAKNLQKFKGATTAGKVLLDRFLKFIPIPK----EKFPM 1502
Query: 769 YVDRSTGEYMA---KRTTEAVMSKLNSHDPDRTGADIRITLKNQVIRKDEKRHKVEAIPG 599
+D + E+ K++ + N DPD + I + +K+Q K EKR V+A G
Sbjct: 1503 LLDEAKREFQEVKLKKSEGTIAGNSNRSDPDWSWDKIFLFMKSQQCTKFEKRF-VDAKAG 1561
Query: 598 QLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNYS 419
Q + + SP+ ++E P NF ++R +AE+ +++ GG
Sbjct: 1562 QTLACFSHEILCHFSPWCRYMEKVFSMFCPKNFYIHQR-KDFDKLAEFSRKYCRGGFCIE 1620
Query: 418 SDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRYT 239
SD +DV D ++ F+ ++ +PE I +I + + G A M+ +G+ T
Sbjct: 1621 SDYEAFDVSQDHNVLAFEVQLMEHMLIPEGIINDYIKMKTELGCKLGNFAIMRFTGEFCT 1680
Query: 238 WALNSVRRAVVTSLVCSITPEDTVAVNGDD 149
+ N+ T L + + V GDD
Sbjct: 1681 FLFNTFCNMAFTFLRYEMQGNEPVCFAGDD 1710
>ref|YP_002308445.1| polyprotein [Plantago mottle virus] gi|59709793|gb|AAW88526.1|
polyprotein [Plantago mottle virus]
Length = 1805
Score = 89.0 bits (219), Expect = 8e-15
Identities = 80/268 (29%), Positives = 117/268 (43%), Gaps = 1/268 (0%)
Frame = -1
Query: 2179 SVLESRADQRVLQSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESR 2000
S L ++ + L LDA ID SR VD + G AGCGK+ LK+ +
Sbjct: 878 SGLGGKSPRTKLLELDAQID-VAFSRN---VDLIHIAGFAGCGKSHPIQKLLKT---RAF 930
Query: 1999 RNARVVTHTEAMRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDL 1820
+ R+ T +RA+ K LD P+ + L T + L + S VI DE + G LDL
Sbjct: 931 HHFRLAVPTNELRAEWKRDLDLPDHESWRLCTWETALFKTSNVLVI-DEIYKLPRGYLDL 989
Query: 1819 VILCNPLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLA 1640
++L +P + V++ GDP Q P + + PS ++ Y ++R K +A
Sbjct: 990 ILLSDPSIQLVIILGDPLQGEYHSSHPSSSNSMLPSETLRLSAYIDCYCWWTYRCPKVIA 1049
Query: 1639 DTLGVYTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDV 1460
D GV T + G I SV LP + S + G A T QG F +
Sbjct: 1050 DLFGVRTYSQTEGKIVSSVTHPQNLPNLVNSIATATTMQNLGHHALTISSSQGMTF-DSM 1108
Query: 1459 EVDATGLEGAMLDA-SAYTALTRSRTGI 1379
+L A + ALTRSR+G+
Sbjct: 1109 NTILLDRHSTLLSAQNCLVALTRSRSGV 1136
>gb|ABH07008.1| putative replicase [Grapevine virus A]
Length = 1710
Score = 89.0 bits (219), Expect = 8e-15
Identities = 141/608 (23%), Positives = 234/608 (38%), Gaps = 35/608 (5%)
Frame = -1
Query: 1867 VIFDEAGRYWGGTLDLVI-LCNPLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVAL 1691
++ DE G G +DLVI + +P + +V+ GDP Q+S E +
Sbjct: 991 IVIDEIGLLPPGYIDLVISVFHP--NTLVLLGDPLQSSYHSKRDNVILEASQEDIFNRIK 1048
Query: 1690 RATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAAGR 1511
A Y SHR K IT + PV+ A+ R + ++ +G
Sbjct: 1049 GALPYLCYSHRPPKNCKIFEIECMGGEAEKRITFRSKRGKDEPVICAT-RAMREMNGSGW 1107
Query: 1510 QAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGIYVRLDAM--------D 1355
YT QG F T + + D A TRSR I + +D
Sbjct: 1108 --YTVSETQGLSFKTCM-IQLCEHWAKKNDEDVMVAFTRSRGEIAISVDRKLKEVLLRTS 1164
Query: 1354 PSSSIRKLPTGSDIMNALVYALRAGNSATLTAPDSLVKACFYRHVSRCMPNLPWFANYGS 1175
S +RK+ +G + + AL + +A +R N+ +Y
Sbjct: 1165 KSELLRKILSGETYRRSSIIAL---------VKKHIPEALIVFEENRLASNV----DYEE 1211
Query: 1174 SLDASAFQSVVSPANYHVVVEGPSCDAPPVDAMQVSGAPVETYIPETHFV---------A 1022
L + + + E + P V+ P+ T++P + + A
Sbjct: 1212 RLAGDPYLKSLLSLYEDIEEEEVEIEEP------VALEPIRTHLPLSEKLNELIPFDLKA 1265
Query: 1021 KEAREVVSRRGVTDQFKETAF----VNPHVHRR-------GDTGTYMLSVDKRLKPATYE 875
KE RE + G T+Q E + NP H+ DT T+M+SV KRL+ +YE
Sbjct: 1266 KEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYE 1325
Query: 874 SNLARMFSNPRLDMCDEYDRLVPDPPRWSPEKHQMYVDRSTGEYMAKRTTEAVMSKLNSH 695
N + S + + ++ + +W + +++ E+M KR ++ + + H
Sbjct: 1326 GNRRKYLSCHGIGR--QMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSA-ALIEQH 1382
Query: 694 ----DPDRTGADIRITLKNQVIRKDEKRHKVEAIPGQLI--HEYDISCTLGDSPYVLFLE 533
DPD ++I LK Q K EKR V+A GQ I + + C G P + E
Sbjct: 1383 SGRSDPDWPSNYLKIFLKQQTCTKMEKRG-VDAKAGQTIACFAHSVLCRFG--PLLRQTE 1439
Query: 532 DEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVL 353
P N + Y + + + ++ K W G SD +D D + + + VL
Sbjct: 1440 KAFRELLPENVMIYSQKNYMD-LDKWSKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVL 1498
Query: 352 RRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRYTWALNSVRRAVVTSLVCSITPED 173
R PE IQ + +L S G +A M+ SG+ T+ N++ V + + +
Sbjct: 1499 RFFLWPEEMIQEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLDKNT 1558
Query: 172 TVAVNGDD 149
+ GDD
Sbjct: 1559 PICFAGDD 1566
>gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]
Length = 1710
Score = 88.6 bits (218), Expect = 1e-14
Identities = 151/685 (22%), Positives = 264/685 (38%), Gaps = 38/685 (5%)
Frame = -1
Query: 2089 VDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTEAMRAD--AKVSLDFPEFRGF 1916
V+ + G AG GK+ L+S D E +++ + ++ D K+S +
Sbjct: 923 VEVLTSFGFAGSGKSHWCQTILRSCDVEK---TLIISPRKVLKDDWVGKIS------KKH 973
Query: 1915 NLPTL-ASVLTEPSTGPVIFDEAGRYWGGTLDLVI-LCNPLVDRVVVNGDPCQTSARFPV 1742
+ T + + + ++ DE G G +DLVI + P +V+ GDP Q+S
Sbjct: 974 KVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFRP--STLVLLGDPLQSSYHSKR 1031
Query: 1741 PGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELP 1562
E + + A Y SHR+ K N +T + P
Sbjct: 1032 DNVVLEASQEDVFSRIKGALPYLCYSHRLPKNCKIFEIECMGNETEKRVTFRSKRGKDEP 1091
Query: 1561 VVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTG 1382
V+ A+ + A G YT QG F T + + D A TRSR
Sbjct: 1092 VICATRA---MKEANGSGWYTVSETQGLSFKTCM-IKLCEHWAKKEDEDVMVAFTRSRGE 1147
Query: 1381 IYVRLDAM--------DPSSSIRKLPTGSDIMNALVYALRAGNSATLTAPDSLVKACFYR 1226
I + +D S ++K+ +G + + AL + +A
Sbjct: 1148 IAIDVDRKLKEMLLRTSKSELLKKILSGETYRRSSIIAL---------VKKHIPEAVIIF 1198
Query: 1225 HVSRCMPNLPWFANYGSSLDASAFQSVVSPANYHVVVEGPSCDAPPVDAMQVSGAPVETY 1046
+R N+ +Y L + + + E + + P V+ P+ T+
Sbjct: 1199 EENRLASNV----DYEERLAGDPYLKSLLSLYEDIEEEEVTLEEP------VALEPIRTH 1248
Query: 1045 IPETHFV---------AKEAREVVSRRGVTDQFKETAFV----NPHVHRR-------GDT 926
+P + + AKE RE + G T+Q E + NP H+ DT
Sbjct: 1249 LPLSEKLNELVPFDLKAKEDREQYTDAGRTEQIDEEGYAQWSANPMSHKALYLRHTSDDT 1308
Query: 925 GTYMLSVDKRLKPATYESNLARMFSNPRLDMCDEYDRLVPDPPRWSPEKHQMYVDRSTGE 746
T+M+SV KRL+ +YE N + + + + ++ + +W + +++ E
Sbjct: 1309 ATFMMSVKKRLRYRSYEGNRRKYLACHGIGR--QMFSVLKETYQWRDIESLPELEKCEKE 1366
Query: 745 YMAKRTTEAVMSKLNSH----DPDRTGADIRITLKNQVIRKDEKRHKVEAIPGQLI--HE 584
+M KR ++ + + H DPD ++I LK Q K EKR V+A GQ I
Sbjct: 1367 FMRKRVEKSA-ALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRG-VDAKAGQTIACFA 1424
Query: 583 YDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNYSSDVTR 404
+ + C G P + E P N + Y + + + ++ K W G SD
Sbjct: 1425 HSVLCRFG--PLLRQTEKAFRELLPENVMIYSQKNYMD-LDKWAKTWVEGMLGTDSDYEA 1481
Query: 403 WDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRYTWALNS 224
+D D + + + VL+ PE I+ + +L S G +A M+ SG+ T+ N+
Sbjct: 1482 FDRSQDEKILDMEIEVLKFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNT 1541
Query: 223 VRRAVVTSLVCSITPEDTVAVNGDD 149
+ V + + ++ + GDD
Sbjct: 1542 LSNMVFSCMRYHLSKNTPICFAGDD 1566
>ref|YP_002308439.1| polyprotein [Scrophularia mottle virus] gi|59709785|gb|AAW88520.1|
polyprotein [Scrophularia mottle virus]
Length = 1800
Score = 88.2 bits (217), Expect = 1e-14
Identities = 70/256 (27%), Positives = 114/256 (44%)
Frame = -1
Query: 2146 LQSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTEA 1967
L LD++ID + VD + G AGCGK+ LK+ + R+ R+ T
Sbjct: 890 LLELDSLIDVAQPRN----VDIIHIAGFAGCGKSHPVQHLLKT---KPFRHFRLSVPTNE 942
Query: 1966 MRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRV 1787
+R++ K LD PE + L T + L + S+ ++ DE + G LDL++L +P +
Sbjct: 943 LRSEWKRDLDLPESEAWRLCTWETSLFK-SSSVIVIDEIYKLPRGYLDLILLSDPSIQLA 1001
Query: 1786 VVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSV 1607
++ GDP Q P + + PS +A Y ++R K +AD GV T +
Sbjct: 1002 ILLGDPLQGEYHSTHPSSSNARLPSETIRLAPYIDCYCWWTYRCPKKIADLFGVKTFSDK 1061
Query: 1606 VGHITHSVGPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAM 1427
G I ++ LP + S N + G A T QG + + V + +
Sbjct: 1062 EGFIRSALSHPQGLPNLVNSIATANTMQNLGHHALTISSSQGMTYSSPVTILLDRHSSLL 1121
Query: 1426 LDASAYTALTRSRTGI 1379
+ ALTRS++G+
Sbjct: 1122 SPQNGLVALTRSKSGV 1137
>ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|sp|Q8UZB6.1|RDRP_GFKVM
RecName: Full=RNA replication protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase; Includes: RecName: Full=Methyltransferase
gi|18073602|emb|CAC84400.1| replicase [Grapevine fleck
virus]
Length = 1949
Score = 86.7 bits (213), Expect = 4e-14
Identities = 76/265 (28%), Positives = 124/265 (46%)
Frame = -1
Query: 2149 VLQSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTE 1970
++Q+LD D + +R V + +A G AGCGK+ L + ++ R+ RVVT T
Sbjct: 1024 LIQALDHTAD-FPPARPPVGLIHIA--GFAGCGKSYPIQQLLAT---QTFRHFRVVTPTT 1077
Query: 1969 AMRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDR 1790
+R + K +L + + T + L + ++ VI DE + G LDL +L +P V+
Sbjct: 1078 ELRHEWKRALKLEGPSSWRVSTWETALAKRASVLVI-DEVYKLPRGYLDLALLADPTVEF 1136
Query: 1789 VVVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNS 1610
V++ GDP Q S P + + + Y + R+ + +AD GV TTN
Sbjct: 1137 VIILGDPLQGSYNPTNPDSSNHRLIPEEDHLRPFIDFYCLWTRRLPRLVADFFGVPTTNP 1196
Query: 1609 VVGHITHSVGPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGA 1430
GH+ + + P++ S L+A G +A TY QG + V +
Sbjct: 1197 TRGHLAFASLNTTQSPLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNL 1256
Query: 1429 MLDASAYTALTRSRTGIYVRLDAMD 1355
+ + A ALTRSR+G++ R A D
Sbjct: 1257 VTNHVALVALTRSRSGVHFRPRAQD 1281
>ref|YP_004464930.1| unnamed protein product [Bombyx mori Macula-like virus]
gi|333033738|dbj|BAK23257.1| RNA-dependent RNA polymerase
[Bombyx mori Macula-like virus]
Length = 1759
Score = 85.9 bits (211), Expect = 7e-14
Identities = 64/239 (26%), Positives = 107/239 (44%)
Frame = -1
Query: 2095 VTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTEAMRADAKVSLDFPEFRGF 1916
V+V + G GCGKT LK+ + RV T +R++ K + P +
Sbjct: 852 VSVQLIHITGFPGCGKTFPVTQLLKT--KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVW 909
Query: 1915 NLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTSARFPVPG 1736
+ T + L + S ++ DE + G LDL ++ +P + V++ GDPCQT P
Sbjct: 910 RVSTWETSLMK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPD 968
Query: 1735 TQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVV 1556
+ + S + + Y +HR+ + LA GV TTN G I P P++
Sbjct: 969 SSNYRLLSEVEHLKPYRDFYCHWTHRLPRRLARFFGVSTTNPQEGFIGRRDNPHKSYPIL 1028
Query: 1555 TASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGI 1379
T+S + V + G +A T+ QG F ++ ++ ++ A TRSR+G+
Sbjct: 1029 TSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 1087
>dbj|BAD35017.1| RNA-dependent RNA polymerase [Bombyx mori Macula-like virus]
Length = 1747
Score = 84.7 bits (208), Expect = 2e-13
Identities = 64/239 (26%), Positives = 106/239 (44%)
Frame = -1
Query: 2095 VTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTEAMRADAKVSLDFPEFRGF 1916
V+V + G GCGKT LK+ + RV T +R++ K + P +
Sbjct: 851 VSVQLIHITGFPGCGKTFPVTQLLKT--KAFKGQYRVAVPTTELRSEWKDHMKLPSSDAW 908
Query: 1915 NLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTSARFPVPG 1736
+ T + L + S ++ DE + G LDL ++ +P + V++ GDPCQT P
Sbjct: 909 RVSTWETSLMK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPD 967
Query: 1735 TQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVV 1556
+ + S + + Y +HR+ LA GV TTN G I P P++
Sbjct: 968 SSNYRLISEVEHLKPYRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPIL 1027
Query: 1555 TASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGI 1379
T+S + V + G +A T+ QG F ++ ++ ++ A TRSR+G+
Sbjct: 1028 TSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 1086
>ref|YP_002308442.1| polyprotein [Nemesia ring necrosis virus] gi|59709789|gb|AAW88523.1|
polyprotein [Nemesia ring necrosis virus]
Length = 1789
Score = 83.2 bits (204), Expect = 5e-13
Identities = 165/752 (21%), Positives = 278/752 (36%), Gaps = 86/752 (11%)
Frame = -1
Query: 2164 RADQRVLQSLDAVIDSYRASRRTVTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARV 1985
R+ ++ L LDA ID VD + G GCGK+ K L ++ ++ R+
Sbjct: 892 RSPKQKLLELDATIDVVFPR----DVDVIHIAGFPGCGKSHPIQ---KLLQTKAFKHFRL 944
Query: 1984 VTHTEAMRADAKVSLDFPEFRGFNLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCN 1805
T +R + K + PE + L T + L + S+ ++ DE + G LDL +L +
Sbjct: 945 SVPTNELRTEWKTDMALPESEVWRLCTWETSLFK-SSNVLVIDEIYKLPRGYLDLALLAD 1003
Query: 1804 PLVDRVVVNGDPCQTSARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGV 1625
P V++ GDP Q P + + S + ++ Y ++R K +AD GV
Sbjct: 1004 PSTSLVILLGDPLQGEYHSSHPSSSNSRLESETSRLSKYIDCYCWWTYRCPKAVADLFGV 1063
Query: 1624 YTTNSVVGHITHSVGPKLELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDAT 1445
T N G I + LP + S + G A T QG + T +
Sbjct: 1064 KTFNPERGFIRGELSHPQGLPNLVNSIATATTMQNLGHHALTISSSQGMTYSTPTTILLD 1123
Query: 1444 GLEGAMLDASAYTALTRSRTGI------YVRLDAMDPSSSIRKLPTGS--DIMNA----- 1304
+ + + ALTRSR G+ Y S + TGS D+M A
Sbjct: 1124 RHSTLLSPQNCFVALTRSRKGVIFIGNMYQASGHFGTSYMFTQALTGSPVDLMCAFPLYH 1183
Query: 1303 ---LVYALRAGNSATLTA---PDSLVKACFYRHVSRCMPNLP------WFAN----YGSS 1172
L++ L A P V + R P++P F + Y
Sbjct: 1184 TLPLIFDPIRSRRHRLVAGDHPTPSVDSTALRRYGHLPPHIPVDYSKDCFVSHKVVYRDG 1243
Query: 1171 LDASAFQSVVSPAN--YHVVVE-----------GPSCDAPPVDAMQVSGAPVETYIPETH 1031
D S + PA H+ VE P C P M + G E H
Sbjct: 1244 EDRSLTTLHLPPARLPLHLQVEPSIPSEVETSSTPPCRTP--ITMALHGESFEEL--SAH 1299
Query: 1030 FVA---KEAREVVSRRGVTDQFK----------ETAFVNPHVHRRGDTGTYML-SVDKRL 893
F+ E +E+ + QF + + + HR T ++ S+ KRL
Sbjct: 1300 FLPAHDPEVKEIAFADQRSSQFPFMDQPFELSCQPSSLLAASHRPASDPTLLVSSIKKRL 1359
Query: 892 KPATYESNLARMFSNPR---------LDMCDEYDRLVPDPPRWSPEKHQMYVD-RSTGEY 743
+ + ++ + F P +C Y R DP P ++ + + EY
Sbjct: 1360 R---FRASESPYFITPNDMILGHHLFDSLCRAYGR---DPSVVIPFDPALFAECIALNEY 1413
Query: 742 --MAKRTTEAVMSKLNSHDPDRTGADIRITLKNQVIRKDEKRHKVE--AIPGQ------- 596
++ +T +++ + DPD +RI K Q HKV ++ G
Sbjct: 1414 AQLSSKTKATIVASASRSDPDWRFTAVRIFAKAQ--------HKVNDGSVFGSWKACQTL 1465
Query: 595 -LIHEYDISCTLGD-SPYVLFLEDEIIPAFPSNFLFYRRMSPGGFVAEYVKRWRTGGQNY 422
L+H+Y + TLG Y L+ P ++ +A + + + G +
Sbjct: 1466 ALMHDY-VIMTLGPVKKYQRILDHNDRP----RHIYTHCGKTPSQLASWCQEFACEGLSL 1520
Query: 421 SSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRLSSRSQHGVMATMQNSGDRY 242
+D T +D + +RR +P+ IQ +H + + +Q G + M+ +G+
Sbjct: 1521 CNDYTSFDQSQHGEAVVLECLKMRRCSIPDSLIQLHLHLKTNISTQFGPLTCMRLTGEPG 1580
Query: 241 TWALNSVRRAVVT-------SLVCSITPEDTV 167
T+ N+ V S C ++ +D+V
Sbjct: 1581 TYDDNTDYNLAVIYSQYQMGSTACMVSGDDSV 1612
>gb|AHX22590.1| RNA-dependent RNA polymerase [Bombyx mori Macula-like virus]
Length = 1748
Score = 82.4 bits (202), Expect = 8e-13
Identities = 64/239 (26%), Positives = 105/239 (43%)
Frame = -1
Query: 2095 VTVDCVAFLGVAGCGKTSATVGYLKSLDPESRRNARVVTHTEAMRADAKVSLDFPEFRGF 1916
V+V + G GCGKT LK+ + RV T +R++ K + P +
Sbjct: 852 VSVQLIHITGFPGCGKTFPVTQLLKT--KAFKGQYRVAVPTTELRSEWKDHMKLPSSDVW 909
Query: 1915 NLPTLASVLTEPSTGPVIFDEAGRYWGGTLDLVILCNPLVDRVVVNGDPCQTSARFPVPG 1736
+ T + L + S ++ DE + G LDL ++ +P + V++ GDPCQT P
Sbjct: 910 RVSTWETSLMK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPD 968
Query: 1735 TQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHSVGPKLELPVV 1556
+ + S + + Y +HR+ LA GV TTN G I P P +
Sbjct: 969 SSNYRLISEVEHLKPYRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPTL 1028
Query: 1555 TASPRYVNVLSAAGRQAYTYGGVQGKDFCTDVEVDATGLEGAMLDASAYTALTRSRTGI 1379
T+S + V + G +A T+ QG F ++ ++ ++ A TRSR+G+
Sbjct: 1029 TSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 1087
>gb|AEN25485.1| polyprotein, partial [Scaevola virus A]
Length = 916
Score = 81.3 bits (199), Expect = 2e-12
Identities = 159/719 (22%), Positives = 268/719 (37%), Gaps = 66/719 (9%)
Frame = -1
Query: 2080 VAFLGVAGCGKTSATVGYL-KSLDPESRRNARVVTHTEAMRADAKVSLDFPEFRGFNLPT 1904
+ G AG GK+ L KS + + R A V++ + D K + + T
Sbjct: 83 IMICGFAGSGKSKGVQNLLNKSFNSDDR--ALVISPRRVLAEDWKTKC-----KNSKIAT 135
Query: 1903 LASVLTEP--STGPVIFDEAGRYWGGTLDLVILCNPLVDR----------VVVNGDPCQT 1760
S L + V+ DE + G +DLV L ++D ++ GDP Q
Sbjct: 136 FESALKKSFNEIQLVVLDEVNLFPNGYIDLV-LTKKIMDSKDEVSGENFLLICLGDPLQA 194
Query: 1759 SARFPVPGTQSEFDPSPLAAVALRATRYATQSHRIFKGLADTLGVYTTNSVVGHITHS-V 1583
S T + + +Y +HR+ +A V TTN H+ +
Sbjct: 195 SYFSENDRTFLDHSNDLRRVCGDKRLKYLYGTHRLPMAVASRFEVRTTNGEQTSPFHATI 254
Query: 1582 GPKL------------ELPVVTASPRYVNVLSAAGRQAYTYGGVQGKDF-----CTDVEV 1454
P L ++ V + + A T+G QG F C E
Sbjct: 255 FPDLISCKKKNEEKGFKVQAVLVASFVEREIFAEHENVLTFGESQGMTFEYGAICLSEET 314
Query: 1453 DATGLEGAMLDASAYTALTRSRTGIYVRLDAMDPSSS-IRKLPTGS-----DIMNALVYA 1292
D ALTR R G L S ++ L G + +L
Sbjct: 315 KLVS------DFHIMVALTRFRKGFSFFLSCRGNSDDFVKNLKMGLLSRFLEKNTSLKAF 368
Query: 1291 LRAGNSATLTAPDSLVKACFYRHVSR--CMPNLPWFANYGSSLDASAFQSVVSPANYHVV 1118
++ + L + +K +V R + PW L +S F NY
Sbjct: 369 VQGMSQVKLELVELNLKGSGLDYVDREEKLAGDPW-------LKSSLFLG--QRINY--- 416
Query: 1117 VEGPSCDAPPVDAMQVSGAPVET----YIPETHFVAKEAREVVSRRGVTDQFKETAF--- 959
++ + V+ PVE+ I VA+E RE R + QFKE F
Sbjct: 417 IDSEFTETSVVEPTPKVHIPVESDEYLSIELDKLVAREFREFKGRYEWSQQFKEENFPVL 476
Query: 958 ----------VNPHV----HRRGDTGTYMLSVDKRLK---PATYESNLARMFSNPRLDMC 830
VN HR D T++ +V KR++ PAT + +S R+ +
Sbjct: 477 SQFRRGEAQCVNYEAIYPRHRADDDITFLAAVRKRMRFSNPATERAKFHNAYSKGRM-LL 535
Query: 829 DEYDRLVPDPPRWSPEKHQMYVDRSTGEYMAKRTTEAVMSKLNSHD---PDRTGADIRIT 659
+++ + VP E++ + + E+ + + ++ + N D PD + +RI
Sbjct: 536 NQFLKFVP----VKRERNSGLLMEALNEFESVKVSKDAATLTNHSDRSNPDWSPDFVRIF 591
Query: 658 LKNQVIRKDEKRHKVEAIPGQLIHEYDISCTLGDSPYVLFLEDEIIPAFPSNFLFYRRMS 479
+K+Q+ K EKR EA GQ + + S + SP+ ++E I P NF +++ S
Sbjct: 592 MKSQLCTKFEKRF-CEAKAGQTLACFSHSILVFFSPWCRYMEKIINKYLPKNFYIHQKRS 650
Query: 478 PGGFVAEYVKRWRTGGQNYSSDVTRWDVGCDASLQNFDAHVLRRSGVPEPYIQSFIHRRL 299
+ E+ K G SD T +D D + +F+ ++ G+ I+ +I +
Sbjct: 651 -FDELNEFCKVHFNGDTCVESDYTAFDASQDHIVLSFEVQLMEHMGIDRVIIERYIELKC 709
Query: 298 SSRSQHGVMATMQNSGDRYTWALNSVRRAVVTSLVCSITPEDTVAVNGDDAAVDRHCDA 122
+ S+ G A M+ +G+ T+ N++ T I + + GDD R+ A
Sbjct: 710 TLGSKLGSFAIMRFTGEFCTFLFNTLCNMAFTFCAYEIKGNEPICFAGDDMCSLRNIPA 768