BLASTX nr result
ID: Akebia25_contig00022458
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00022458
(2147 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|33... 582 e-163
ref|YP_004300278.1| replication-associated polyprotein [Fig flec... 578 e-162
ref|NP_115454.1| polyprotein [Maize rayado fino virus] gi|819647... 575 e-161
gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf ... 553 e-155
gb|ACV53023.1| polyprotein [Blackberry virus S] 550 e-153
ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwar... 549 e-153
gb|AAW33732.1| polyprotein [Grapevine rupestris vein feathering ... 510 e-142
gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus] 504 e-140
ref|NP_734076.1| RNA-dependent RNA polymerase [maize rayado fino... 504 e-140
ref|YP_224293.1| RNA-dependent RNA polymerase [Citrus sudden dea... 501 e-139
ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden... 501 e-139
dbj|BAJ14673.1| replicase-associated protein [Poinsettia mosaic ... 499 e-138
dbj|BAJ14669.1| replicase-associated protein [Poinsettia mosaic ... 499 e-138
dbj|BAJ14667.1| replicase-associated protein [Poinsettia mosaic ... 499 e-138
emb|CAL80776.1| polyprotein [Poinsettia mosaic virus] 499 e-138
dbj|BAJ14665.1| replicase-associated protein [Poinsettia mosaic ... 498 e-138
ref|NP_733998.1| RNA-depedent RNA polymerase [Poinsettia mosaic ... 494 e-137
ref|NP_037647.1| replicase-associated protein [Poinsettia mosaic... 494 e-137
ref|YP_003475889.1| replicase-associated polyprotein [Olive late... 490 e-136
ref|NP_734079.1| RNA-dependent RNA polymerase [oat blue dwarf vi... 483 e-133
>ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|332672309|gb|AEE25899.3|
polyprotein [Switchgrass mosaic virus]
Length = 2061
Score = 582 bits (1501), Expect = e-163
Identities = 319/675 (47%), Positives = 416/675 (61%), Gaps = 2/675 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ TIMANANRSDPDWRWSAVRIF+K+QHK NE S+FGSWKACQTLALMHDAV
Sbjct: 1434 FAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAV 1493
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR+FD RDRP+H+YVHA HTPF+M++WC++HL+P +ANDYTAFDQSQH
Sbjct: 1494 VLLLGPVKKYQRVFDQRDRPSHLYVHAGHTPFEMAEWCQQHLTPAIKLANDYTAFDQSQH 1553
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E KM RLSIP+ LI LH YLKTNV+TQFGPLTCMRLTGEPGTYDDNTDYN+AV
Sbjct: 1554 GEAVVFERFKMSRLSIPQELIDLHVYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAV 1613
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
+H +Y + S P MVSGDDSL+D +P W + PML L FK E RY FCGY VG
Sbjct: 1614 LHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWAAVEPMLALTFKKERGRYATFCGYYVGFT 1673
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GAVRSP LFAK ++A+DD S+DDKL +YLTEF+VGHSLG W ++PVE V YQ+A FD
Sbjct: 1674 GAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWTILPVETVPYQSACFD 1733
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 1076
FFCR+A + K++L++GE P++++S + + +YA ++SS R+ LL S+ R
Sbjct: 1734 FFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSL 1793
Query: 1077 PFDTEESLQFEGVLQHAVSITTPPPRLTGGFLPSMSWFDRIXXXXXXXXXXXXXXXXXXX 1256
P D E S Q +G L H P L G +P+
Sbjct: 1794 PEDPEVS-QLQGELLHQFQSLHLP--LRGASMPN-------------------------- 1824
Query: 1257 XXXXXXXLATPYFDPTPLSNPVPAPRPAQSPSLSQLNQTYLPSALSDLMTGDVQSRSGPN 1436
LA P+ +P + PS S P++ S + ++ GP
Sbjct: 1825 ------PLAAPF-------RLLPLGSASLGPSYSVAPLQPPPASESPDSMAENATQVGPA 1871
Query: 1437 QKPDAGGSPHDLVVAPASLPSPLRTISTPASTSPPGITLPFQFIHTQIDGTSDGIHTMDL 1616
D D + ++P+P R + T + I LPFQ+ T G + T DL
Sbjct: 1872 PARD------DRLDRQPAIPAPPRVVETAPTHY---IDLPFQWKITDFTGAAAYHDTGDL 1922
Query: 1617 ATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAWTTADVTPTSADILTIFGS 1796
+ + L PYR A S E+ + PS T P F + WT A ++PT +G
Sbjct: 1923 SASPVLTTLCAPYRHAELISVELSLAPCPPSFTKPIMFTVVWTPATLSPTDGKETDFYGG 1982
Query: 1797 QRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSISHIKNAESAKLGSSAPVC 1976
++++IGGPV L ST A L+++NP+I+ S++Y+DTP+ ++S + G +
Sbjct: 1983 RQISIGGPVMLSSTTAIPADLTRMNPVIKSSVAYRDTPRWTMS----VPAVSGGDTKVNL 2038
Query: 1977 GTIVVRGSVFCASPA 2021
T +RG + ++P+
Sbjct: 2039 ATGFIRGVIRVSAPS 2053
>ref|YP_004300278.1| replication-associated polyprotein [Fig fleck-associated virus]
gi|326380895|emb|CAQ86912.3| replication-associated
polyprotein [Fig fleck-associated virus]
Length = 2161
Score = 578 bits (1490), Expect = e-162
Identities = 320/711 (45%), Positives = 420/711 (59%), Gaps = 34/711 (4%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
++QL+SKTQ TI ANA RSDPDWRWSA RIF+K+QHK NE SIFG WKACQTLAL+HDAV
Sbjct: 1465 YSQLTSKTQKTIQANAYRSDPDWRWSAARIFAKTQHKVNEGSIFGPWKACQTLALLHDAV 1524
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
+L+ GP+KKYQR FD++DRP H+YVHA TP Q+S WC++ L+P +ANDYTAFDQSQ
Sbjct: 1525 ILIFGPIKKYQRHFDDKDRPPHLYVHAGKTPHQLSSWCQQFLTPGPRLANDYTAFDQSQG 1584
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEA VLE+ KMRR+SIPE LIQLH +KT++TTQFGPLTCMRLTGEPGTYDDNTDYN A+
Sbjct: 1585 GEAAVLEVLKMRRVSIPEHLIQLHKTIKTSITTQFGPLTCMRLTGEPGTYDDNTDYNTAI 1644
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
++SQ+ + P +VSGDDSLIDR PLP+P W TI +L LR K E++ + LFCGY VGP
Sbjct: 1645 LYSQFQLGDTPVLVSGDDSLIDRVPLPHPHWPTISNLLLLRPKPEISNFSLFCGYFVGPE 1704
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GAVR+P LFAK +A D G LD LAS+L EF+VGHSLG +WNLIP + + YQ ALFD
Sbjct: 1705 GAVRAPRALFAKLAIAFDLGELDKCLASFLAEFTVGHSLGDLVWNLIPPDLLIYQFALFD 1764
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKL---LLKGSK-- 1067
FCR+ SREQKL L++GE+PD ++ L SSAR+L L +G K
Sbjct: 1765 AFCRECSREQKLALRLGEIPDYSRLLRFDQFHQFTFASFSLLKSSARRLYLRLFRGKKLR 1824
Query: 1068 ---TYRPFDTEESLQFEG-------------VLQHAVSITTPPPRLTGGFLPSMSWFDRI 1199
T+ F E + F+ H + + PP + PS+S
Sbjct: 1825 NVNTFPAFHPEGAASFDSESFQPLHPDVAFDPTPHLIHQISRPPSIP---TPSLSTPTNA 1881
Query: 1200 XXXXXXXXXXXXXXXXXXXXXXXXXXLATPYFDPTP--LSNPVPAPRPAQSPSLSQLNQT 1373
+ + +P ++ +P P+ A SP T
Sbjct: 1882 LLTPQKSSIHRAACTGFPITCQPRHHTSHRHHHSSPRTTAHSLPRPQSAPSPLWRTSRMT 1941
Query: 1374 YLPSALSDLMTGDVQSRSGPNQKPDAGGSPHDLVVAPASLPSPLRTISTPASTSPPG--- 1544
+ S L+ + S + G P +V P LP P S+SP G
Sbjct: 1942 TVNSLFQQLLPLNASSSESRDSSVLPGSVPESRLVQPPQLP-------PPPSSSPKGNAT 1994
Query: 1545 ---ITLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMT 1715
LPFQF + GT G T+D+++ +L L PYR S E + A +
Sbjct: 1995 RLATDLPFQFNFYDVTGTETGSTTLDISSKDVVLKLLGPYRHGVLLSLEAITMPSANAAK 2054
Query: 1716 YPQTFDIAWTTADVTPTSADILTIFGSQRVAIG-----GPVNLPSTNVFVAPLSQLNPII 1880
YPQT D W+TAD ++++IL +G QR+ G +NLP A LS LNP+I
Sbjct: 2055 YPQTLDAVWSTADHVISASEILATYGGQRLTWGEASMNAALNLP------ADLSHLNPVI 2108
Query: 1881 RDSISYKDTPKLSISHIKNAESAKLGSSAPVCGTIVVRGSVFCASPALKPT 2033
+DS +YKDTP+L++ +N +S LG +AP+ G++++RG + +SP PT
Sbjct: 2109 KDSTTYKDTPRLNLRFYQNPDSVSLGINAPISGSVIIRGVLRLSSPTNTPT 2159
>ref|NP_115454.1| polyprotein [Maize rayado fino virus]
gi|81964785|sp|Q91TW9.1|POLG_MRFVC RecName: Full=Genome
polyprotein; Includes: RecName: Full=RNA-directed RNA
polymerase; Includes: RecName: Full=Helicase; Includes:
RecName: Full=Methyltransferase; Contains: RecName:
Full=RNA replication protein; Contains: RecName:
Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat
protein gi|14030260|gb|AAK52838.1|AF265566_1 polyprotein
[maize rayado fino virus]
Length = 2027
Score = 575 bits (1481), Expect = e-161
Identities = 323/679 (47%), Positives = 405/679 (59%), Gaps = 6/679 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ TIMANANRSDPDWRWSAVRIF+K+QHK NE S+FGSWKACQTLALMHDAV
Sbjct: 1403 FAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAV 1462
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR FD RDRP+ +YVHA HTPF+M+DWCR HL+P +ANDYTAFDQSQH
Sbjct: 1463 VLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPAVKLANDYTAFDQSQH 1522
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E KM RLSIP L+ LH YLKTNV+TQFGPLTCMRLTGEPGTYDDNTDYN+AV
Sbjct: 1523 GEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAV 1582
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
+H +Y + S P MVSGDDSL+D +P W I PML L FK E RY FCGY VG
Sbjct: 1583 LHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFT 1642
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GAVRSP LFAK ++A+DDGS+ DKL +YLTEF+VGHS G W ++PVE V YQ+A FD
Sbjct: 1643 GAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFD 1702
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 1076
FFCR+A + K++L++GE P++++S + + +YA ++SS R+ LL S+ R
Sbjct: 1703 FFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHSSRRPRSL 1762
Query: 1077 PFDTEESLQFEGVLQHAVSITTPPPRLTGGFLPSMSWFDRIXXXXXXXXXXXXXXXXXXX 1256
P D E S Q +G L H P L GG +P
Sbjct: 1763 PEDPEVS-QLQGELLHQFQSLHLP--LRGGHMP--------------------------- 1792
Query: 1257 XXXXXXXLATPYFDPTPLSNPVPAPRPAQSPSLSQLNQTYLPSALSDLMTGDVQSRSGPN 1436
NP+ AP S S L TY + ++ V S +
Sbjct: 1793 -------------------NPLAAPFRLLQQS-SSLGPTYAVAPIA--RAPQVPPPSMAD 1830
Query: 1437 QKPDAGGSP--HDLVVAPASLPSPLRTISTPASTSPPGITLPFQFIHTQIDGTSDGIHTM 1610
G P D V LP P R + T S + LPFQ+ T G + T
Sbjct: 1831 NATQVGPVPPRDDRVDRQPPLPDPPRVLETAPSHF---LDLPFQWKVTDFTGYAAYHGTD 1887
Query: 1611 DLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAWTTADVTPTSADILTIF 1790
DL + + L PYR A E+ V PS + P F + WT A ++P +
Sbjct: 1888 DLVASAVLTTLCAPYRHAELLYVEISVAPCPPSFSKPIMFTVVWTPATLSPRDGKETDYY 1947
Query: 1791 GSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPK--LSISHIKNAESAKLGSS 1964
G +++ +GGPV L ST A L+++NP I+ S+SY DTP+ +S+ + ++ ++
Sbjct: 1948 GGRQITVGGPVMLSSTTAVPADLARMNPFIKSSVSYNDTPRWTMSVPAVTGGDTKIPLAT 2007
Query: 1965 APVCGTIVVRGSVFCASPA 2021
A V G + VR A+P+
Sbjct: 2008 AFVRGIVRVRAPSGAATPS 2026
>gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf virus]
Length = 2067
Score = 553 bits (1426), Expect = e-155
Identities = 314/674 (46%), Positives = 401/674 (59%), Gaps = 1/674 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALMHDAV
Sbjct: 1444 FAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAV 1503
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR+FD RDRPAH+Y+HA TP MS WC+ HL+P +ANDYTAFDQSQH
Sbjct: 1504 VLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQH 1563
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH YLKT+V TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1564 GEAVVLERKKMERLSIPDHLISLHVYLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAV 1623
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY
Sbjct: 1624 INLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRV 1683
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+A FD
Sbjct: 1684 GCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFD 1743
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+ +R
Sbjct: 1744 FFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSL 1802
Query: 1083 DTEESL-QFEGVLQHAVSITTPPPRLTGGFLPSMSWFDRIXXXXXXXXXXXXXXXXXXXX 1259
+ ++ +G L H P P PS+ F +
Sbjct: 1803 PEDPAVSSLQGELLHTFHAPMPSP-------PSLPLFGGL-------------------- 1835
Query: 1260 XXXXXXLATPYFDPTPLSNPVPAPRPAQSPSLSQLNQTYLPSALSDLMTGDVQSRSGPNQ 1439
+ TP+ T L P P SP+ M+G S+ GP
Sbjct: 1836 --SPDNILTPHEFRTALYESSAYPTPPNSPT---------------SMSGIHASQVGPPP 1878
Query: 1440 KPDAGGSPHDLVVAPASLPSPLRTISTPASTSPPGITLPFQFIHTQIDGTSDGIHTMDLA 1619
D D SLP R + +S + P + +PFQ+ G S T DL+
Sbjct: 1879 ASD------DRTDRQPSLPLAPRLVE--SSLAVPYVDVPFQWAVASYAGDSAKFLTDDLS 1930
Query: 1620 THSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAWTTADVTPTSADILTIFGSQ 1799
S + LT YR A SAE+ LA + + P + WT A + P + L +G +
Sbjct: 1931 GSSHLSRLTIGYRHAELISAELEFAPLAAAFSKPISVTAVWTIASIAPATTTELQYYGGR 1990
Query: 1800 RVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSISHIKNAESAKLGSSAPVCG 1979
+ +GGPV + S A L++LNP+I+ ++ + D P+ + S N+ SA + P+
Sbjct: 1991 LLTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPRFTYSVYANSGSA----NTPLI- 2045
Query: 1980 TIVVRGSVFCASPA 2021
T++VRG + + P+
Sbjct: 2046 TVMVRGVIRLSGPS 2059
>gb|ACV53023.1| polyprotein [Blackberry virus S]
Length = 2035
Score = 550 bits (1416), Expect = e-153
Identities = 312/676 (46%), Positives = 399/676 (59%), Gaps = 3/676 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ+ IMAN+ RSDPDWR+SAVRIFSK+QHK NE SIFG+WKACQTLALMHDAV
Sbjct: 1431 FAQLSSKTQSVIMANSKRSDPDWRYSAVRIFSKAQHKVNENSIFGNWKACQTLALMHDAV 1490
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR+FD +DRPAH+YVHA +TP QMS WC+ HL+ H+ANDYTAF QSQH
Sbjct: 1491 VLLLGPVKKYQRMFDAQDRPAHLYVHAGNTPAQMSSWCQNHLTDTVHLANDYTAFVQSQH 1550
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH +LKTNV TQFGPLTCMRLTGEPGTYDDN+DYNLAV
Sbjct: 1551 GEAVVLERKKMERLSIPQALIDLHVFLKTNVETQFGPLTCMRLTGEPGTYDDNSDYNLAV 1610
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+ +Y + +P M+SGDDSL+D +P P W + P+L LRFK E RY FCGY VG
Sbjct: 1611 INLEYSASHVPTMISGDDSLLDFEPPRRPEWSALEPLLALRFKKERDRYATFCGYYVGKA 1670
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GAVRSPI LFAK ++A+DDGSL DKL SYL EF+VGHSLG W L+P+E V +Q+A FD
Sbjct: 1671 GAVRSPIALFAKLMIAVDDGSLGDKLISYLAEFAVGHSLGDPFWTLLPLEAVLFQSACFD 1730
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR+A K+ LK+GEV ++I++ + + +Y+ LSS+ R+ LL S+ R
Sbjct: 1731 FFCRRAPPALKISLKLGEVSESIMARLGRGLNWASSAVYSMLSSAQRRALLTSSRQGRSL 1790
Query: 1083 -DTEESLQFEGVLQHAVSITTPPPRLTGGFLPSMSWFDRIXXXXXXXXXXXXXXXXXXXX 1259
D E + +G L + P LP
Sbjct: 1791 PDNPEVSKLQGELLQSFQFVPQPSMNNSLLLPLFGG------------------------ 1826
Query: 1260 XXXXXXLATPYFDPTPLSNPVPAPRPAQSPSLSQLNQTYLPSALSDLMTGDVQSRSGPNQ 1439
P+ ++P+P P +V S+ GP
Sbjct: 1827 -----------LSPSLAAHPMPGP--------------------------NVTSQVGPAP 1849
Query: 1440 KPDAGGSPHDLVVAPASLPSPLRTISTPASTSP--PGITLPFQFIHTQIDGTSDGIHTMD 1613
D D V SLP R A SP I PFQ+ G + D
Sbjct: 1850 PND------DRVDRQPSLPLAPRV----AEVSPLHAHIDYPFQWEVGTYSGDKAAFVSDD 1899
Query: 1614 LATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAWTTADVTPTSADILTIFG 1793
L+ ++ LT YR A SAEV LAPS + P + WT A ++P SA + +G
Sbjct: 1900 LSASKTLKTLTAGYRHAEILSAEVDFVPLAPSFSKPISVGAVWTIASISPASAHEQSYYG 1959
Query: 1794 SQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSISHIKNAESAKLGSSAPV 1973
+ + +GGPV + ST +S++NP+I+ S+SY DTP++S + A G++
Sbjct: 1960 GRLLTLGGPVLMSSTTRIPLDVSRINPVIKSSVSYSDTPRISYTVYSAA-----GTANTA 2014
Query: 1974 CGTIVVRGSVFCASPA 2021
++++RG V + P+
Sbjct: 2015 LISVIIRGIVRLSGPS 2030
>ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwarf virus]
gi|1843580|gb|AAC57874.1| replicase-associated
polyprotein [oat blue dwarf virus]
Length = 2066
Score = 549 bits (1415), Expect = e-153
Identities = 318/678 (46%), Positives = 401/678 (59%), Gaps = 5/678 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALMHDAV
Sbjct: 1444 FAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAV 1503
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR+FD RDRPAH+Y+HA TP MS WC+ HL+P +ANDYTAFDQSQH
Sbjct: 1504 VLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQH 1563
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH +LKT+V TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1564 GEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAV 1623
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY
Sbjct: 1624 INLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRV 1683
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+A FD
Sbjct: 1684 GCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFD 1743
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+ +R
Sbjct: 1744 FFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSL 1802
Query: 1083 DTE---ESLQFEGVLQ--HAVSITTPPPRLTGGFLPSMSWFDRIXXXXXXXXXXXXXXXX 1247
+ SLQ E +LQ HA + P L GG P
Sbjct: 1803 PEDPAVSSLQGE-LLQTFHAPMPSLPSLPLFGGLSPD----------------------- 1838
Query: 1248 XXXXXXXXXXLATPYFDPTPLSNPVPAPRPAQSPSLSQLNQTYLPSALSDLMTGDVQSRS 1427
+ TP+ T L P P SP+ M+G S+
Sbjct: 1839 ---------NILTPHEFRTALYESSAYPTPPNSPT---------------SMSGIHASQV 1874
Query: 1428 GPNQKPDAGGSPHDLVVAPASLPSPLRTISTPASTSPPGITLPFQFIHTQIDGTSDGIHT 1607
GP D D SLP R + +S + P + +PFQ+ G S T
Sbjct: 1875 GPPPASD------DRTDRQPSLPLAPRIVE--SSLAVPHVDVPFQWAVASYAGDSAKFLT 1926
Query: 1608 MDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAWTTADVTPTSADILTI 1787
DL+ S + LT YR A SAE+ LA + P + WT A + P + L
Sbjct: 1927 DDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFAKPISVTAVWTIASIAPATTTELQY 1986
Query: 1788 FGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSISHIKNAESAKLGSSA 1967
+G + + +GGPV + S A L++LNP+I+ ++ + D P+ + S N SA +
Sbjct: 1987 YGGRLLTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPRFTYSVYANGGSA----NT 2042
Query: 1968 PVCGTIVVRGSVFCASPA 2021
P+ T++VRG + + P+
Sbjct: 2043 PLI-TVMVRGVIRLSGPS 2059
>gb|AAW33732.1| polyprotein [Grapevine rupestris vein feathering virus]
Length = 2068
Score = 510 bits (1314), Expect = e-142
Identities = 248/399 (62%), Positives = 309/399 (77%), Gaps = 5/399 (1%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ IMAN +RSDPDWRWSAVRIF+K+QHK N+ SIFG WKACQTLALMHDAV
Sbjct: 1476 FAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQTLALMHDAV 1535
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR+FD DRPA+I+V+A HTP +M++WCR +L P E VANDYT+FDQSQH
Sbjct: 1536 VLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKPGERVANDYTSFDQSQH 1595
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E KKM RL+IP LI LH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1596 GEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1655
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
+H +YL+ S P MVSGDDSL+ R+P NP+W + P+L LRFK E TRY FCGY VG
Sbjct: 1656 LHLEYLVGSTPCMVSGDDSLLGREPPRNPIWQAVKPLLALRFKKERTRYGEFCGYYVGCE 1715
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G +RSP+ LFAK ++ +DDG++++K+ SY TEFS+GHSLG WNL+P++ V +Q+A+FD
Sbjct: 1716 GCIRSPMALFAKLMVCVDDGTIEEKMISYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFD 1775
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLL-KGSKTYRP 1079
FFCR A + K++ K+G V ++ S +LS ++ YAYLSS R+ L K + + P
Sbjct: 1776 FFCRHAPEDVKVMFKLGRVEVSLFSHLLSKLTWLSYSSYAYLSSLQRRALRGKAVRQHFP 1835
Query: 1080 FDTEESLQFEGVLQHAVSITTPPPRLTGGFL----PSMS 1184
D++E + +G L HA S+++ P +LTGG L PSMS
Sbjct: 1836 GDSKEVTELQGELLHAFSMSSTPRKLTGGLLLPPSPSMS 1874
Score = 85.5 bits (210), Expect = 9e-14
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 1/201 (0%)
Frame = +3
Query: 1419 SRSGPNQKPDAGGSPHDLVVAPASLPSPLRTISTPASTSPP-GITLPFQFIHTQIDGTSD 1595
S S Q+P +G D + P PL + SP +T+PFQ++ I S
Sbjct: 1872 SMSNEAQQPASGRPSRDDHRSDRQPPLPL---APKVQESPALSLTIPFQWVALIIKSDSA 1928
Query: 1596 GIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAWTTADVTPTSAD 1775
T DLA +++ LT P+R EVV+ + P T W + P S D
Sbjct: 1929 AF-TADLAASTTLKKLTDPFRSCEITQLEVVLMPTLNAFNNPVTLHCVWRVNSIQPASGD 1987
Query: 1776 ILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSISHIKNAESAKL 1955
L +G Q + GGPV++ + A L+++NP I+ S+ Y DTP+L+ + +K A + L
Sbjct: 1988 ELLYYGGQAITAGGPVSMNALATVPADLTRINPRIKSSVGYLDTPRLTGTTMKCATAQTL 2047
Query: 1956 GSSAPVCGTIVVRGSVFCASP 2018
+++RG V + P
Sbjct: 2048 -----PLAYVMIRGMVSVSGP 2063
>gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus]
Length = 2189
Score = 504 bits (1299), Expect = e-140
Identities = 244/376 (64%), Positives = 297/376 (78%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIFGSWKACQTLALMHDAV
Sbjct: 1582 FAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHDAV 1641
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL+LGPVKKYQR+FD RDRP H+Y+HA +TP QMS+WC++HL+ +ANDYTAFDQSQH
Sbjct: 1642 VLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQSQH 1701
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNLAV
Sbjct: 1702 GEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAV 1761
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY
Sbjct: 1762 INCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHV 1821
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A FD
Sbjct: 1822 GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFD 1881
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 1076
FFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R
Sbjct: 1882 FFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSM 1941
Query: 1077 PFDTEESLQFEGVLQH 1124
P D + +L +LQH
Sbjct: 1942 PDDPDTTLLQGELLQH 1957
Score = 88.2 bits (217), Expect = 1e-14
Identities = 57/213 (26%), Positives = 98/213 (46%)
Frame = +3
Query: 1383 SALSDLMTGDVQSRSGPNQKPDAGGSPHDLVVAPASLPSPLRTISTPASTSPPGITLPFQ 1562
++L+ M D Q+ P++ P LP+ R + P + PFQ
Sbjct: 1987 TSLAFSMASDAQAGPAPSRDDRVDRQPR--------LPAAPRVAEV--GLNAPSVDYPFQ 2036
Query: 1563 FIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAW 1742
++ DG+ + DL+ +++ + YR A S E+ V LA + + P + W
Sbjct: 2037 WVVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVW 2096
Query: 1743 TTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSI 1922
T A ++P SA + +G + +GGPV + ST A L++LNP+++ + Y D P+ S
Sbjct: 2097 TIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFSY 2156
Query: 1923 SHIKNAESAKLGSSAPVCGTIVVRGSVFCASPA 2021
S N G+ TI++RG V + P+
Sbjct: 2157 SVYSNG-----GTKGTNLCTIILRGVVRLSGPS 2184
>ref|NP_734076.1| RNA-dependent RNA polymerase [maize rayado fino virus]
Length = 595
Score = 504 bits (1297), Expect = e-140
Identities = 246/376 (65%), Positives = 290/376 (77%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ TIMANANRSDPDWRWSAVRIF+K+QHK NE S+FGSWKACQTLALMHDAV
Sbjct: 209 FAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAV 268
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR FD RDRP+ +YVHA HTPF+M+DWCR HL+P +ANDYTAFDQSQH
Sbjct: 269 VLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPAVKLANDYTAFDQSQH 328
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E KM RLSIP L+ LH YLKTNV+TQFGPLTCMRLTGEPGTYDDNTDYN+AV
Sbjct: 329 GEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAV 388
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
+H +Y + S P MVSGDDSL+D +P W I PML L FK E RY FCGY VG
Sbjct: 389 LHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFT 448
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GAVRSP LFAK ++A+DDGS+ DKL +YLTEF+VGHS G W ++PVE V YQ+A FD
Sbjct: 449 GAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFD 508
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 1076
FFCR+A + K++L++GE P++++S + + +YA ++SS R+ LL S+ R
Sbjct: 509 FFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHSSRRPRSL 568
Query: 1077 PFDTEESLQFEGVLQH 1124
P D E S Q +G L H
Sbjct: 569 PEDPEVS-QLQGELLH 583
>ref|YP_224293.1| RNA-dependent RNA polymerase [Citrus sudden death-associated virus]
Length = 602
Score = 501 bits (1290), Expect = e-139
Identities = 242/376 (64%), Positives = 296/376 (78%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIF SWKACQTLALMHDAV
Sbjct: 210 FAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHDAV 269
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL+LGPVKKYQR+FD RDRP H+Y+HA +TP QMS+WC++HL+ +ANDYTAFDQSQH
Sbjct: 270 VLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQSQH 329
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNLAV
Sbjct: 330 GEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAV 389
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
++ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY
Sbjct: 390 VNCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHV 449
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A FD
Sbjct: 450 GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFD 509
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 1076
FFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R
Sbjct: 510 FFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSM 569
Query: 1077 PFDTEESLQFEGVLQH 1124
P D + +L +LQH
Sbjct: 570 PDDPDTTLLQGELLQH 585
>ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden death-associated
virus] gi|59609791|gb|AAW88343.1| replicase-associated
polyprotein [Citrus sudden death-associated virus]
Length = 2188
Score = 501 bits (1290), Expect = e-139
Identities = 242/376 (64%), Positives = 296/376 (78%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIF SWKACQTLALMHDAV
Sbjct: 1581 FAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHDAV 1640
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL+LGPVKKYQR+FD RDRP H+Y+HA +TP QMS+WC++HL+ +ANDYTAFDQSQH
Sbjct: 1641 VLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQSQH 1700
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNLAV
Sbjct: 1701 GEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAV 1760
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
++ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY
Sbjct: 1761 VNCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHV 1820
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A FD
Sbjct: 1821 GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFD 1880
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 1076
FFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R
Sbjct: 1881 FFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSM 1940
Query: 1077 PFDTEESLQFEGVLQH 1124
P D + +L +LQH
Sbjct: 1941 PDDPDTTLLQGELLQH 1956
Score = 88.2 bits (217), Expect = 1e-14
Identities = 57/213 (26%), Positives = 98/213 (46%)
Frame = +3
Query: 1383 SALSDLMTGDVQSRSGPNQKPDAGGSPHDLVVAPASLPSPLRTISTPASTSPPGITLPFQ 1562
++L+ M D Q+ P++ P LP+ R + P + PFQ
Sbjct: 1986 TSLAFSMASDAQAGPAPSRDDRVDRQPR--------LPAAPRVAEV--GLNAPSVDYPFQ 2035
Query: 1563 FIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQTFDIAW 1742
++ DG+ + DL+ +++ + YR A S E+ V LA + + P + W
Sbjct: 2036 WVVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVW 2095
Query: 1743 TTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDTPKLSI 1922
T A ++P SA + +G + +GGPV + ST A L++LNP+++ + Y D P+ S
Sbjct: 2096 TIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFSY 2155
Query: 1923 SHIKNAESAKLGSSAPVCGTIVVRGSVFCASPA 2021
S N G+ TI++RG V + P+
Sbjct: 2156 SVYSNG-----GTKGTNLCTIILRGVVRLSGPS 2183
>dbj|BAJ14673.1| replicase-associated protein [Poinsettia mosaic virus]
Length = 1981
Score = 499 bits (1285), Expect = e-138
Identities = 242/372 (65%), Positives = 295/372 (79%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLS+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 1403 FAQLSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 1462
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVKKYQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 1463 VLFLGPVKKYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLKSGISHTNDYTAFDQSQH 1522
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1523 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1582
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 1583 IYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 1642
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSPITLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 1643 GAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 1702
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 1703 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 1762
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 1763 EDPDVSHMQGEL 1774
Score = 103 bits (257), Expect = 3e-19
Identities = 61/162 (37%), Positives = 89/162 (54%)
Frame = +3
Query: 1548 TLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQT 1727
T+PFQ + + G T +LA H S+ +T PYR AR + +V A S P T
Sbjct: 1822 TVPFQTVAMDVVAAG-GNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPIT 1880
Query: 1728 FDIAWTTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDT 1907
D+ W+T++V T IL ++G R AIGGP+ L T A LS LNP+I+DS+SY DT
Sbjct: 1881 LDLVWSTSNVIFTDLQILQVYGGTRFAIGGPL-LSHTYELRADLSYLNPVIKDSVSYVDT 1939
Query: 1908 PKLSISHIKNAESAKLGSSAPVCGTIVVRGSVFCASPALKPT 2033
PKL+++ ++ GS+A T++V G + + PT
Sbjct: 1940 PKLTLN---ASDPTGSGSTATTVATVLVSGKLIVSDALATPT 1978
>dbj|BAJ14669.1| replicase-associated protein [Poinsettia mosaic virus]
gi|302698753|dbj|BAJ14671.1| replicase-associated protein
[Poinsettia mosaic virus]
Length = 1981
Score = 499 bits (1285), Expect = e-138
Identities = 242/372 (65%), Positives = 295/372 (79%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLS+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 1403 FAQLSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 1462
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVKKYQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 1463 VLFLGPVKKYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLKSGISHTNDYTAFDQSQH 1522
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1523 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1582
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 1583 IYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 1642
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSPITLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 1643 GAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 1702
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 1703 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 1762
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 1763 EDPDVSHMQGEL 1774
Score = 103 bits (257), Expect = 3e-19
Identities = 61/162 (37%), Positives = 89/162 (54%)
Frame = +3
Query: 1548 TLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQT 1727
T+PFQ + + G T +LA H S+ +T PYR AR + +V A S P T
Sbjct: 1822 TVPFQTVAMDVVAAG-GNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPIT 1880
Query: 1728 FDIAWTTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDT 1907
D+ W+T++V T IL ++G R AIGGP+ L T A LS LNP+I+DS+SY DT
Sbjct: 1881 LDLVWSTSNVIFTDLQILQVYGGTRFAIGGPL-LSHTYELRADLSYLNPVIKDSVSYVDT 1939
Query: 1908 PKLSISHIKNAESAKLGSSAPVCGTIVVRGSVFCASPALKPT 2033
PKL+++ ++ GS+A T++V G + + PT
Sbjct: 1940 PKLTLN---ASDPTGSGSTATTVATVLVSGKLIVSDALATPT 1978
>dbj|BAJ14667.1| replicase-associated protein [Poinsettia mosaic virus]
Length = 1981
Score = 499 bits (1285), Expect = e-138
Identities = 242/372 (65%), Positives = 295/372 (79%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLS+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 1403 FAQLSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 1462
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVKKYQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 1463 VLFLGPVKKYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLKSGISHTNDYTAFDQSQH 1522
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1523 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1582
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 1583 IYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 1642
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSPITLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 1643 GAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 1702
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 1703 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 1762
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 1763 EDPDVSHMQGEL 1774
Score = 103 bits (257), Expect = 3e-19
Identities = 61/162 (37%), Positives = 89/162 (54%)
Frame = +3
Query: 1548 TLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQT 1727
T+PFQ + + G T +LA H S+ +T PYR AR + +V A S P T
Sbjct: 1822 TVPFQTVAMDVVAAG-GNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPIT 1880
Query: 1728 FDIAWTTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDT 1907
D+ W+T++V T IL ++G R AIGGP+ L T A LS LNP+I+DS+SY DT
Sbjct: 1881 LDLVWSTSNVIFTDLQILQVYGGTRFAIGGPL-LSHTYELRADLSYLNPVIKDSVSYVDT 1939
Query: 1908 PKLSISHIKNAESAKLGSSAPVCGTIVVRGSVFCASPALKPT 2033
PKL+++ ++ GS+A T++V G + + PT
Sbjct: 1940 PKLTLN---ASDPTGSGSTATTVATVLVSGKLIVSDALATPT 1978
>emb|CAL80776.1| polyprotein [Poinsettia mosaic virus]
Length = 1978
Score = 499 bits (1284), Expect = e-138
Identities = 242/372 (65%), Positives = 295/372 (79%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLS+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 1400 FAQLSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 1459
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVKKYQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 1460 VLFLGPVKKYQRIFDSQERPANVYHHAGHSPLEMSEWAQKHLRSGISHTNDYTAFDQSQH 1519
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1520 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1579
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 1580 IYSKYLVLDHPIMVSGDDSVIGENPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 1639
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSPITLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 1640 GAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 1699
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 1700 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 1759
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 1760 EDPDVSHMQGEL 1771
Score = 102 bits (255), Expect = 5e-19
Identities = 61/162 (37%), Positives = 89/162 (54%)
Frame = +3
Query: 1548 TLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQT 1727
T+PFQ + + G T +LA H S+ +T PYR AR + +V A S P T
Sbjct: 1819 TVPFQTVAMDVVAAG-GNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPIT 1877
Query: 1728 FDIAWTTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDT 1907
D+ W+T +V T+ IL ++G R AIGGP+ L T A LS LNP+I+DS+SY DT
Sbjct: 1878 LDLVWSTNNVIFTNLQILQVYGGTRFAIGGPL-LSHTYELRADLSYLNPVIKDSVSYVDT 1936
Query: 1908 PKLSISHIKNAESAKLGSSAPVCGTIVVRGSVFCASPALKPT 2033
PKL+++ ++ GS+A T++V G + + PT
Sbjct: 1937 PKLTLN---ASDPTGSGSTATTVATVLVSGKLIVSDALATPT 1975
>dbj|BAJ14665.1| replicase-associated protein [Poinsettia mosaic virus]
Length = 1986
Score = 498 bits (1283), Expect = e-138
Identities = 241/372 (64%), Positives = 295/372 (79%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQLS+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 1399 FAQLSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 1458
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVKKYQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 1459 VLFLGPVKKYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLRSGISHTNDYTAFDQSQH 1518
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1519 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1578
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 1579 IYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 1638
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSP+TLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 1639 GAIRSPVTLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 1698
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 1699 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 1758
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 1759 EDPDVSHMQGEL 1770
Score = 99.4 bits (246), Expect = 6e-18
Identities = 59/152 (38%), Positives = 85/152 (55%)
Frame = +3
Query: 1548 TLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQT 1727
T+PFQ + + G T +LA H S+ +T PYR AR + +V A S P T
Sbjct: 1818 TVPFQTVAMDVVAAG-GNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPIT 1876
Query: 1728 FDIAWTTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDT 1907
D+ W+T +V T IL ++G R AIGGP+ L T A LS LNP+I+DS+SY DT
Sbjct: 1877 LDLVWSTNNVIFTDLQILQVYGGTRFAIGGPL-LSHTYELRADLSYLNPVIKDSVSYVDT 1935
Query: 1908 PKLSISHIKNAESAKLGSSAPVCGTIVVRGSV 2003
PKL+++ ++ GS+A T++V G +
Sbjct: 1936 PKLTLN---ASDPTGSGSTATTVATVLVSGKL 1964
>ref|NP_733998.1| RNA-depedent RNA polymerase [Poinsettia mosaic virus]
Length = 574
Score = 494 bits (1271), Expect = e-137
Identities = 240/372 (64%), Positives = 293/372 (78%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQ S+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 189 FAQSSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 248
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVK YQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 249 VLFLGPVKIYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLQSGISHTNDYTAFDQSQH 308
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 309 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 368
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 369 IYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 428
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSPITLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 429 GAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 488
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 489 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 548
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 549 EDPDVSHMQGEL 560
>ref|NP_037647.1| replicase-associated protein [Poinsettia mosaic virus]
gi|6822204|emb|CAB70969.1| replicase-associated protein
[Poinsettia mosaic virus]
Length = 1987
Score = 494 bits (1271), Expect = e-137
Identities = 240/372 (64%), Positives = 293/372 (78%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQ S+KT++TI+ANA+RSDPDWR +AV+IFSK+QHK NEASIFGSWKACQTLALMHD V
Sbjct: 1400 FAQSSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYV 1459
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VL LGPVK YQR+FD+++RPA++Y HA H+P +MS+W ++HL NDYTAFDQSQH
Sbjct: 1460 VLFLGPVKIYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLQSGISHTNDYTAFDQSQH 1519
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVV E+ KMRRLSIPE LI LH+YLK NV TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 1520 GEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAV 1579
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+S+YL+ P MVSGDDS+I P + W I +L LRFK E T++PLFCGY VGP
Sbjct: 1580 IYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA 1639
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GA+RSPITLFAK + A+DD S+DDKLASYL+EF++GHSLG + W+L+P++QV YQ+A++D
Sbjct: 1640 GAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYD 1699
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR ASREQK +L IGEVPDT++S+I S R +R LY L SS R+ L F
Sbjct: 1700 FFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTDAF 1759
Query: 1083 DTEESLQFEGVL 1118
+ + +G L
Sbjct: 1760 EDPDVSHMQGEL 1771
Score = 99.4 bits (246), Expect = 6e-18
Identities = 59/152 (38%), Positives = 85/152 (55%)
Frame = +3
Query: 1548 TLPFQFIHTQIDGTSDGIHTMDLATHSSILALTRPYRFARFESAEVVVFTLAPSMTYPQT 1727
T+PFQ + + G T +LA H S+ +T PYR AR + +V A S P T
Sbjct: 1819 TVPFQTVAMDVVAAG-GNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPIT 1877
Query: 1728 FDIAWTTADVTPTSADILTIFGSQRVAIGGPVNLPSTNVFVAPLSQLNPIIRDSISYKDT 1907
D+ W+T +V T IL ++G R AIGGP+ L T A LS LNP+I+DS+SY DT
Sbjct: 1878 LDLVWSTNNVIFTDLQILQVYGGTRFAIGGPL-LSHTYELRADLSYLNPVIKDSVSYVDT 1936
Query: 1908 PKLSISHIKNAESAKLGSSAPVCGTIVVRGSV 2003
PKL+++ ++ GS+A T++V G +
Sbjct: 1937 PKLTLN---ASDPTGSGSTATTVATVLVSGKL 1965
>ref|YP_003475889.1| replicase-associated polyprotein [Olive latent virus 3]
gi|289467899|gb|ACN94861.2| replicase-associated
polyprotein [Olive latent virus 3]
Length = 2000
Score = 490 bits (1262), Expect = e-136
Identities = 236/372 (63%), Positives = 287/372 (77%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
+AQL+SKTQ I++NA RSDPDWR+SAVRIFSK+QHK N+ S FGSWKACQTLALMHDAV
Sbjct: 1623 YAQLTSKTQAVIISNARRSDPDWRYSAVRIFSKTQHKVNDGSFFGSWKACQTLALMHDAV 1682
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
+LLLGPVKKYQRLFD+ DRP+HIY+HA HTP MS+WC+++L+ H+ NDYT+FDQSQH
Sbjct: 1683 ILLLGPVKKYQRLFDSEDRPSHIYIHAGHTPQDMSNWCQQNLTDSIHLTNDYTSFDQSQH 1742
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KM RLSIP+ LI LH +LK NV+TQFGPLTCMRLTGEPGTYDDN+DYNLAV
Sbjct: 1743 GEAVVLEQMKMARLSIPQHLIDLHTHLKCNVSTQFGPLTCMRLTGEPGTYDDNSDYNLAV 1802
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
IH QY + S P MVSGDDSL+D +P W I P+L LRFK E+ RY LFCGY VG
Sbjct: 1803 IHLQYAVGSTPCMVSGDDSLLDSKPPIRDEWTGIAPLLALRFKTELDRYSLFCGYFVGSS 1862
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
GAVR P LFAK ++A+DDGS+ K+ASYLTEFS+GHSLG E W L+PVEQV +Q+A FD
Sbjct: 1863 GAVRCPRALFAKIMIAVDDGSIPLKIASYLTEFSIGHSLGDEFWQLLPVEQVVFQSACFD 1922
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR KL+L++GE P +I+ + + +Y+ LS++AR LL+K T P
Sbjct: 1923 FFCRNCPPAAKLLLRLGEAPQSILEATFGKLKWASNAVYSMLSATARHLLIKSRLTRPPP 1982
Query: 1083 DTEESLQFEGVL 1118
++ E Q +G L
Sbjct: 1983 ESVEVSQLQGQL 1994
>ref|NP_734079.1| RNA-dependent RNA polymerase [oat blue dwarf virus]
Length = 622
Score = 483 bits (1242), Expect = e-133
Identities = 247/393 (62%), Positives = 291/393 (74%), Gaps = 5/393 (1%)
Frame = +3
Query: 3 FAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 182
FAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALMHDAV
Sbjct: 232 FAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAV 291
Query: 183 VLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQH 362
VLLLGPVKKYQR+FD RDRPAH+Y+HA TP MS WC+ HL+P +ANDYTAFDQSQH
Sbjct: 292 VLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQH 351
Query: 363 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 542
GEAVVLE KKM RLSIP+ LI LH +LKT+V TQFGPLTCMRLTGEPGTYDDNTDYNLAV
Sbjct: 352 GEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAV 411
Query: 543 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPH 722
I+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY
Sbjct: 412 INLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRV 471
Query: 723 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 902
G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+A FD
Sbjct: 472 GCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFD 531
Query: 903 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPF 1082
FFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+ +R
Sbjct: 532 FFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSL 590
Query: 1083 DTE---ESLQFEGVLQ--HAVSITTPPPRLTGG 1166
+ SLQ E +LQ HA + P L GG
Sbjct: 591 PEDPAVSSLQGE-LLQTFHAPMPSLPSLPLFGG 622