BLASTX nr result

ID: Akebia25_contig00020557 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00020557
         (1041 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB00038.1| reverse transcriptase family member [Glycine max]       47   2e-09
gb|AAT40504.2| Polyprotein, putative [Solanum demissum]                45   3e-09
emb|CCH50976.1| T4.15 [Malus x robusta]                                50   5e-09
ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596...    44   2e-08
ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis] g...    48   5e-08
gb|AEJ72569.1| putative reverse transcriptase family member [Mal...    47   2e-07
emb|CBL94165.1| putative reverse transcriptase family member [Ma...    47   4e-07
ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840...    39   6e-06

>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
          Length = 377

 Score = 47.4 bits (111), Expect(2) = 2e-09
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLN---GKTMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           WAV+    NK+ +AE+RML    GKT + KIRNE IR  VGV  I  K+ E+ L
Sbjct: 253 WAVKSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRL 306



 Score = 42.4 bits (98), Expect(2) = 2e-09
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRKNL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDRLE 338
           WFGHV+RR + S++R+   +E   ++ R   +      E++K D+      R + LDR  
Sbjct: 308 WFGHVERRPVDSVLRRVDQMERR-QTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTL 366

Query: 339 WRNMIHLAD 365
           WR +IH+AD
Sbjct: 367 WRKLIHVAD 375


>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
          Length = 868

 Score = 44.7 bits (104), Expect(2) = 3e-09
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRKN--L*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDR 332
           WFGHV+RR   + +R+   + +EG  +   +P K    W E+++ D+  L     + LDR
Sbjct: 624 WFGHVKRRSADAPVRRCEVMVVEGTRRGRGRPKK---YWEEVIRQDLAMLHITEDMTLDR 680

Query: 333 LEWRNMIHLADL 368
            EWR+ I + D+
Sbjct: 681 KEWRSRIKVEDV 692



 Score = 44.3 bits (103), Expect(2) = 3e-09
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLN---GKTMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           W V+   V+K+ +AE+RML    G T   KIRNE IR  VGV  + +KL E+ L
Sbjct: 569 WPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARL 622


>emb|CCH50976.1| T4.15 [Malus x robusta]
          Length = 986

 Score = 49.7 bits (117), Expect(2) = 5e-09
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5    WAVRKHRVNKLIIAEIRMLN---GKTMKKKIRNECIRGNVGVPLIGNKLSESLL 157
            WAV+   V+K+ +AE+RML    G T K KIRNE IRG VGV  I  K+ E+ L
Sbjct: 861  WAVKHQHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIRGKVGVAEIQGKMRENQL 914



 Score = 38.5 bits (88), Expect(2) = 5e-09
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 159  WFGHVQRRLITSLIRK---NL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALD 329
            WFGHVQRR   + IR+      ++G     R   +      E ++ D+  L   + +  D
Sbjct: 916  WFGHVQRRPTDAPIRRCDYGTEVQG----RRGRGRPRKTLEETLRKDLEYLDLTKDMTQD 971

Query: 330  RLEWRNMIHLAD 365
            R +WR+ IH+AD
Sbjct: 972  RAQWRSKIHIAD 983


>ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
          Length = 278

 Score = 44.3 bits (103), Expect(2) = 2e-08
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLN---GKTMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           W V+   V K+ +AE+RML    G T   KIRNE IR  VGV  + +KL E+ L
Sbjct: 156 WPVKNSHVQKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARL 209



 Score = 42.4 bits (98), Expect(2) = 2e-08
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRK--NL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDR 332
           WFGHV+RR   + +R+   L +EG  +   +P K    W E+++ D+  L     + LDR
Sbjct: 211 WFGHVRRRCADAPVRRCEGLVVEGTRRGRGRPKK---YWGEVIRQDLAQLHITEDMTLDR 267

Query: 333 LEWRNMI 353
             WR+ I
Sbjct: 268 KAWRSRI 274


>ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis]
           gi|405551390|gb|EKB47241.1| hypothetical protein
           B879_04163 [Cecembia lonarensis LW9]
          Length = 133

 Score = 48.1 bits (113), Expect(2) = 5e-08
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLNGK---TMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           WAV+   V+K+ +AE+RML G    T K KIRNE I+G VGV  I  K+ E+ L
Sbjct: 8   WAVKHQHVHKMGVAEMRMLRGMCGHTRKDKIRNEDIQGKVGVAEIEGKMRENRL 61



 Score = 37.0 bits (84), Expect(2) = 5e-08
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRK-NL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDRL 335
           WFGHVQRR   + +R+ +   E   +  R  P++     E ++ D+  L     +  DR 
Sbjct: 63  WFGHVQRRPTDAPVRRCDYGTEVRGRRGRGRPRKTLE--ETLRKDLEYLDLTEDMTQDRA 120

Query: 336 EWRNMIHLAD 365
           +WR+ IH+AD
Sbjct: 121 QWRSRIHIAD 130


>gb|AEJ72569.1| putative reverse transcriptase family member [Malus domestica]
          Length = 212

 Score = 47.4 bits (111), Expect(2) = 2e-07
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLN---GKTMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           WAV+   V+K+ +AE+RML    G T K KIRNE IRG VGV  I   + E+ L
Sbjct: 87  WAVKYQHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIRGKVGVAEIEGNMRENRL 140



 Score = 35.8 bits (81), Expect(2) = 2e-07
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRKNL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDRLE 338
           WFGHVQRR   + IR+    E   +  R   +      E ++ D+  L   + +  DR +
Sbjct: 142 WFGHVQRRPTYAPIRR-CDYETEVQGRRGRGRPRKTLEETLRKDLGYLDLTKDMTQDRAQ 200

Query: 339 WRNMIHLAD 365
           W + IH+AD
Sbjct: 201 WCSKIHIAD 209


>emb|CBL94165.1| putative reverse transcriptase family member [Malus domestica]
          Length = 163

 Score = 47.4 bits (111), Expect(2) = 4e-07
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLNGK---TMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           WAV+   V+K+ +AEIRML G    T K KI NE IRG VGV  +  K+ E+ L
Sbjct: 39  WAVKHQHVHKMGVAEIRMLRGMCRHTRKDKIVNEDIRGKVGVAEVEGKMRENRL 92



 Score = 34.7 bits (78), Expect(2) = 4e-07
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRK-NL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDRL 335
           WFGHVQR    + +R+ N   E   +  R  P++     E ++ D+  L     +  +R 
Sbjct: 94  WFGHVQRMPTDAPVRRCNYETEVRGRRGRGRPRKTLE--ETLRKDLEYLDLTEDMTQNRA 151

Query: 336 EWRNMIHLAD 365
           +WR+ IH+AD
Sbjct: 152 QWRSRIHIAD 161


>ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840703 [Brachypodium
           distachyon]
          Length = 567

 Score = 38.9 bits (89), Expect(2) = 6e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +2

Query: 5   WAVRKHRVNKLIIAEIRMLN---GKTMKKKIRNECIRGNVGVPLIGNKLSESLL 157
           W  ++  V +L +AE+RML    G T + ++RN+ IR  VGV  I  KL +  L
Sbjct: 444 WPTKRRHVQQLGVAEMRMLRWMCGHTRRDRVRNDDIRDRVGVAPIAEKLVQHRL 497



 Score = 38.9 bits (89), Expect(2) = 6e-06
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +3

Query: 159 WFGHVQRRLITSLIRKNL*IEGF*KSERKPPKEHAMWMEMVKLDMNSLSNRRRLALDRLE 338
           WFGH+QRR + + +     ++     +R   + +  W E VK D+   +  + LA++R  
Sbjct: 499 WFGHIQRRPLDAPVHSGR-LKRAGNVKRGRGRPNLTWEESVKRDLKGWNITKELAMNRAA 557

Query: 339 WRNMIHLAD 365
           W+  IH+ +
Sbjct: 558 WKLAIHVPE 566


Top