BLASTX nr result
ID: Akebia25_contig00017178
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00017178
(673 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 91 9e-26
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 95 3e-21
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 87 4e-21
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 92 6e-21
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 92 2e-20
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 90 3e-20
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 91 3e-20
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 92 8e-20
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 91 1e-19
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 86 3e-19
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 84 8e-19
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 85 2e-18
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 83 9e-18
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 83 1e-17
gb|ABK28140.1| unknown [Arabidopsis thaliana] 79 1e-17
gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thali... 79 1e-17
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 83 1e-17
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 85 2e-17
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 84 2e-17
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana] 83 2e-17
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 90.5 bits (223), Expect(2) = 9e-26
Identities = 41/122 (33%), Positives = 64/122 (52%)
Frame = +3
Query: 174 VESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINSNK 353
+E FLW G ++W I + +GGLG +L NKA + +W++ S+
Sbjct: 661 IEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSS 720
Query: 354 SSIWVDWIKKNMIKW*HFWTMPITNNASWIWRKILQLRETIQDLIVHRIGNGDDTFI*QD 533
S+ W DW+K ++K FW P+ + SW WRK+L++RE V+ IG+G T + D
Sbjct: 721 SNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLWFD 780
Query: 534 PW 539
W
Sbjct: 781 NW 782
Score = 53.1 bits (126), Expect(2) = 9e-26
Identities = 27/59 (45%), Positives = 39/59 (66%)
Frame = +1
Query: 1 LRLVDR*PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGL 177
LR+ D PL W+ + L AG+++LI+ V+SS+QVYW+S L+LPKKVLK +
Sbjct: 603 LRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDI 661
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 94.7 bits (234), Expect(2) = 3e-21
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ + S + FLW+GP + + +SW I + +++GGLG L N + + +W + S
Sbjct: 242 KEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTS 301
Query: 348 NKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
N S+WV W K N++K FW++ P ++ SW+W+K+L+ RET + + NG T
Sbjct: 302 NDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 361
Query: 525 *QDPWT 542
D W+
Sbjct: 362 WFDNWS 367
Score = 33.9 bits (76), Expect(2) = 3e-21
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
PL W +R+L AG++ LI V+ S +W S LP LK
Sbjct: 193 PLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLK 242
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 86.7 bits (213), Expect(2) = 4e-21
Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+GP ++ K I+W + + +++GGLG L+ N+ + + +W I S
Sbjct: 984 QEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILS 1043
Query: 348 NKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+ S+WV W+ K++I+ FW++ T SW+WRKIL+ R+ + + +G T
Sbjct: 1044 ARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSF 1103
Query: 525 *QDPW 539
D W
Sbjct: 1104 WHDHW 1108
Score = 41.2 bits (95), Expect(2) = 4e-21
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
PL W RFL AG+++LIK V+SS+ +W SV LPK L+
Sbjct: 935 PLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQ 984
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 92.4 bits (228), Expect(2) = 6e-21
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+G ++++K ISW ++ + + +GGLG L+ N + VW I S
Sbjct: 390 QEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIIS 449
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMPITNN-ASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+ S+WV W++ N++K FW + N SWIW+KIL+ R + +GNG+ T
Sbjct: 450 HGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSF 509
Query: 525 *QDPWT 542
D W+
Sbjct: 510 WFDDWS 515
Score = 35.0 bits (79), Expect(2) = 6e-21
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 1 LRLVDR*PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLR 180
L VD PL W +RFL AG+ LI +I S +W S LP+ ++ +
Sbjct: 334 LSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIE 393
Query: 181 VL 186
L
Sbjct: 394 KL 395
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 92.0 bits (227), Expect(2) = 2e-20
Identities = 38/131 (29%), Positives = 70/131 (53%)
Frame = +3
Query: 156 QESAERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 335
+E ++ + FLW+GP +S I+W+ + R +++GGLG ++ N + +W
Sbjct: 351 RECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIW 410
Query: 336 DINSNKSSIWVDWIKKNMIKW*HFWTMPITNNASWIWRKILQLRETIQDLIVHRIGNGDD 515
I S S+WV WI+ ++K FW+ + SW+W+K+L+ R+T + I NG+
Sbjct: 411 RIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGET 470
Query: 516 TFI*QDPWTAR 548
D W+++
Sbjct: 471 ASFWYDDWSSK 481
Score = 33.9 bits (76), Expect(2) = 2e-20
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
PL W ARFL AG++ L+ V+ S+ +W S LP++ ++
Sbjct: 306 PLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVR 355
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 90.1 bits (222), Expect(2) = 3e-20
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Frame = +3
Query: 174 VESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINSNK 353
+E + FLW+G M++ ISW + + + +GGLG L+ N + VW I S+
Sbjct: 839 LEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHS 898
Query: 354 SSIWVDWIKKNMIKW*HFWTMPIT-NNASWIWRKILQLRETIQDLIVHRIGNGDDTFI*Q 530
+S+WV W+ +++++ FW + T + SWIW+K+L+ RE + L +GNG T
Sbjct: 899 NSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWY 958
Query: 531 DPWT 542
D W+
Sbjct: 959 DNWS 962
Score = 35.0 bits (79), Expect(2) = 3e-20
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 1 LRLVDR*PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGL 177
L D PL W +RFL AG++ LI V+ S+ +W + LP+K ++ L
Sbjct: 781 LSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREL 839
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 90.9 bits (224), Expect(2) = 3e-20
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ + S + FLW+GP ++ + +SW I + K GGLG L N + + +W + S
Sbjct: 754 KEINSICSAFLWSGPELNRRKAKVSWDDICKP-KQGGLGLRSLTEANVVSVLKLIWRVTS 812
Query: 348 NKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
N S+WV W K N++K FW++ P ++ SW+W+K+L+ RET + + NG T
Sbjct: 813 NDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 872
Query: 525 *QDPWT 542
D W+
Sbjct: 873 WFDNWS 878
Score = 33.9 bits (76), Expect(2) = 3e-20
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
PL W +R+L AG++ LI V+ S +W S LP LK
Sbjct: 705 PLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLK 754
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 92.0 bits (227), Expect(2) = 8e-20
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Frame = +3
Query: 156 QESAERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 335
++ ++ + FLW+G MS+ ISW + + + +GGLG L+ N + VW
Sbjct: 480 RQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVW 539
Query: 336 DINSNKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGD 512
I SN +S+W W+ + +I+ W++ T+ SWIWRKIL++R+ + +GNG+
Sbjct: 540 RIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGE 599
Query: 513 DTFI*QDPWTAREGGWILNNNQQADSCNSRLHREAKIS 626
D W+A G +++ + + + REA ++
Sbjct: 600 SASFWYDHWSAH--GRLIDTVGDKGTIDLGIPREASVA 635
Score = 31.6 bits (70), Expect(2) = 8e-20
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 1 LRLVDR*PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
L D PL W RF AG+ LIK V+ S+ +W + LP++ ++
Sbjct: 428 LTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIR 484
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 91.3 bits (225), Expect(2) = 1e-19
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Frame = +3
Query: 156 QESAERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 335
+E + S+ LW+GP ++ K +SW I + +K+GGLG L NK + +W
Sbjct: 554 RECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIW 613
Query: 336 DINSNKSSIWVDWIKKNMIKW*HFWTMPITNN-ASWIWRKILQLRETIQDLIVHRIGNGD 512
+ S + S+WV W + N++K FW++ + SWIWR++L+ RE + + NG
Sbjct: 614 RLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGV 673
Query: 513 DTFI*QDPWTAREGGWILN 569
+T D W+ E G ++N
Sbjct: 674 NTSFWFDNWS--EKGPLIN 690
Score = 32.0 bits (71), Expect(2) = 1e-19
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVL 168
PL W +R+L AG++ LI V+ S+ +W + LP++ +
Sbjct: 509 PLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECI 557
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 85.9 bits (211), Expect(2) = 3e-19
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ ++S + FLW+GP ++ K ++W + + +GGLG L+ NK + + +W + S
Sbjct: 93 KEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS 152
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMP-ITNNASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+ +S+WV W++ +++ FW++ T SW+W+KIL+ R + H I NG +T
Sbjct: 153 S-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSF 211
Query: 525 *QDPWT 542
D W+
Sbjct: 212 WFDNWS 217
Score = 35.8 bits (81), Expect(2) = 3e-19
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
PL W AR L AG+++LI VI S+ +W S LP +K
Sbjct: 44 PLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIK 93
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 84.3 bits (207), Expect(2) = 8e-19
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ ++ + FLW+GP ++ K +SW + +++GGLG L NK + +W + S
Sbjct: 57 KEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS 116
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMPITNN-ASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+ SS+WV W+++ +I+ FW++ T+ SW+WRK+L+ R + I NG
Sbjct: 117 S-SSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSF 175
Query: 525 *QDPWT 542
D W+
Sbjct: 176 WHDNWS 181
Score = 35.8 bits (81), Expect(2) = 8e-19
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
PL W AR L AG+++LI VI S+ +W S LP +K
Sbjct: 8 PLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIK 57
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 84.7 bits (208), Expect(2) = 2e-18
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 156 QESAERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 335
+E ++ + +LW+G ++ I+W + + + +GGLG L+ N + +W
Sbjct: 215 RECIREIDKMCSAYLWSGGDLNTSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIW 274
Query: 336 DINSNKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGD 512
I S+ S+WV WI ++K FW + T+ SW+W+K+L+ R+ L + NG
Sbjct: 275 RIISHADSLWVKWIHATLLKQVSFWAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGA 334
Query: 513 DTFI*QDPWT 542
TF D W+
Sbjct: 335 HTFFWYDNWS 344
Score = 34.3 bits (77), Expect(2) = 2e-18
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 1 LRLVDR*PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
L D PL W ARFL AG++ LI V+ S+ +W LP++ ++
Sbjct: 163 LSSTDYLPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIR 219
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 83.2 bits (204), Expect(2) = 9e-18
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+GP ++ K I+W + + +++GGLG L NK + +W + S
Sbjct: 410 KEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS 469
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMPITNN-ASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+SS+WV+W+ +I+ FW+ ++ SW+W+K+L+ R+ + + I +G T
Sbjct: 470 RQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSF 529
Query: 525 *QDPWT 542
D W+
Sbjct: 530 WYDNWS 535
Score = 33.5 bits (75), Expect(2) = 9e-18
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 186
PL W AR L AG++ LI VI S+ +W S LP +K + L
Sbjct: 361 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 415
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 82.8 bits (203), Expect(2) = 1e-17
Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+GP ++ K I+W + + +++GGLG L NK + +W + S
Sbjct: 979 KEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS 1038
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMPITNN-ASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+SS+WV+W+ +I+ FW+ ++ SW+W+K+L R+ + + I +G T
Sbjct: 1039 RQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSF 1098
Query: 525 *QDPWT 542
D W+
Sbjct: 1099 WYDNWS 1104
Score = 33.5 bits (75), Expect(2) = 1e-17
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 186
PL W AR L AG++ LI VI S+ +W S LP +K + L
Sbjct: 930 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 984
>gb|ABK28140.1| unknown [Arabidopsis thaliana]
Length = 349
Score = 78.6 bits (192), Expect(2) = 1e-17
Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+GP + I+W ++ +GGLG L+ N + +W + +
Sbjct: 61 KEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLA 120
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMPITN-NASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+++S+W W++ +I+ +FW + ++ SW+WRK+L LR+ + I NG +T
Sbjct: 121 SQTSLWGQWVQTYLIRRNNFWAIKASSYQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSF 180
Query: 525 *QDPWTA 545
D W++
Sbjct: 181 WYDHWSS 187
Score = 37.7 bits (86), Expect(2) = 1e-17
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 186
PL W RFL G+++LIK V+ S+ +WSS LP +K + L
Sbjct: 12 PLIEKIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFRLPGNCMKEIERL 66
>gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thaliana]
Length = 348
Score = 78.6 bits (192), Expect(2) = 1e-17
Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+GP + I+W ++ +GGLG L+ N + +W + +
Sbjct: 61 KEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLA 120
Query: 348 NKSSIWVDWIKKNMIKW*HFWTMPITN-NASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
+++S+W W++ +I+ +FW + ++ SW+WRK+L LR+ + I NG +T
Sbjct: 121 SQTSLWGQWVQTYLIRRNNFWAIKASSYQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSF 180
Query: 525 *QDPWTA 545
D W++
Sbjct: 181 WYDHWSS 187
Score = 37.7 bits (86), Expect(2) = 1e-17
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 186
PL W RFL G+++LIK V+ S+ +WSS LP +K + L
Sbjct: 12 PLIEKIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFRLPGNCMKEIERL 66
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 83.2 bits (204), Expect(2) = 1e-17
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +3
Query: 156 QESAERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 335
++ ++ + +LW+G ++ I+W + + +++GGLG L+ N + +W
Sbjct: 82 RDCIREIDKMCSAYLWSGGELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIW 141
Query: 336 DINSNKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGD 512
I S+ S+WV WI+ +++K FW + T+ SW+WRKIL+ R+ + L I NG
Sbjct: 142 RIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGA 201
Query: 513 DTFI*QDPWT 542
T D W+
Sbjct: 202 RTSFWYDDWS 211
Score = 32.7 bits (73), Expect(2) = 1e-17
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 58 WKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLK 171
W ARFL AG++ LI V+ S+ +W LP+ ++
Sbjct: 49 WSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRDCIR 86
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 84.7 bits (208), Expect(2) = 2e-17
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +3
Query: 174 VESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINSNK 353
+E + FLW+GP ++ K I+W I + +K+GGLG L NK + +W + S +
Sbjct: 1136 IEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQ 1195
Query: 354 SSIWVDWIKKNMIKW*HFWTMPITNN-ASWIWRKILQLRETIQDLIVHRIGNGDDTFI*Q 530
S+WV WI +I+ FW+ ++ SW+W+K+L+ RE + + + NG T
Sbjct: 1196 PSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWY 1255
Query: 531 DPWT 542
D W+
Sbjct: 1256 DHWS 1259
Score = 30.8 bits (68), Expect(2) = 2e-17
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 22 PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 186
PL W AR L AG++ L+ VI S+ +W S LP ++ + L
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKL 1139
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 83.6 bits (205), Expect(2) = 2e-17
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+++ES +RFLW+ + ++W ++ + +GG+G + N+ R +W + S
Sbjct: 727 KKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFS 786
Query: 348 NKSSIWVDWIKKNMI-KW*HFWTMPITNNASWIWRKILQLRETIQDLIVHRIGNGDDTFI 524
N S+WV W K++ + K FW P + SW W+ +L+LR + I +GNG D
Sbjct: 787 NSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASF 846
Query: 525 *QDPWTAREGGWILNNNQQADSCNSRLHREAKISSLSNDTCLS 653
D WT G ++ + R+H AKIS D C S
Sbjct: 847 WFDNWT--PFGPLIKFLGNEGPRDLRVHLNAKIS----DVCTS 883
Score = 32.0 bits (71), Expect(2) = 2e-17
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 1 LRLVDR*PLXXXXXXXXXXWKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLR 180
L + + PL W R L AG+++L+ VIS + +W S +LP +K +
Sbjct: 671 LTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIE 730
Query: 181 VL 186
L
Sbjct: 731 SL 732
>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
Length = 382
Score = 82.8 bits (203), Expect(2) = 2e-17
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Frame = +3
Query: 168 ERVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 347
+ +E + FLW+GP ++ +SW + + +++GGLG L+ N + +W + S
Sbjct: 254 KEIEKLCSAFLWSGPDLNPHKAKLSWVDVCKPKQEGGLGLRPLKEINDVCCLKLIWRLVS 313
Query: 348 NKSSIWVDWIKKNMIKW*HFWTM-PITNNASWIWRKILQLRETIQDLIVHRIGNGDDT 518
+ +S+WV WI+K ++K FW++ TN SW+W K+++ R+ ++ + NG T
Sbjct: 314 HANSLWVQWIEKYLLKADTFWSVKATTNRGSWMWSKLIKYRDVAKEFCKVEVRNGHRT 371
Score = 32.7 bits (73), Expect(2) = 2e-17
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 58 WKARFLLLAGQMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 186
W AR+L AG++ LI V+ S +W S LP+ +K + L
Sbjct: 217 WTARYLSYAGRLSLITSVLWSTCNFWLSAFRLPRGCIKEIEKL 259