BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00017001
         (2738 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1274   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1271   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1271   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1261   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1249   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1249   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1249   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1246   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1239   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1224   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...  1218   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1212   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1211   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1210   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1209   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1208   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1207   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1201   0.0  
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...  1194   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1193   0.0  

>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1274 bits (3296), Expect = 0.0
 Identities = 626/843 (74%), Positives = 713/843 (84%), Gaps = 5/843 (0%)
 Frame = +1

Query: 223  LQESITRIFVEDPPWISDFL-----STPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETE 387
            ++ESI RIFV+DPPWIS FL        +   +  KL F++ + R Y  LR RQ+K ETE
Sbjct: 97   VKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETE 156

Query: 388  AWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYA 567
            AW                 KLAPNLPYVK+LFLGWF P +EAI +EQR Q+TKKQKAAYA
Sbjct: 157  AWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYA 216

Query: 568  PHIDLLPADKMAVIVMHKMMGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKK 747
            PHI+LLPADKMAVIVMHKMMGL+M+G EEG VRVVQAAV IG AIE EVRIH+FLE+TK 
Sbjct: 217  PHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKN 276

Query: 748  FQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLG 927
            F+  K V G   E + +E+EILRKRVK+ I+K+K+IEVQKLVK+ ++   WGRD QAKLG
Sbjct: 277  FERHKTV-GHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKN-EEITPWGRDTQAKLG 333

Query: 928  SRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVR 1107
            SRL+ELL ETAYVQ PVNQ AD PP++ PAFRHTFKT+T E G++  R+YGV+ECD LV 
Sbjct: 334  SRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVL 393

Query: 1108 KGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQM 1287
             GLDRTA++MV+PYVPMLIPPKKWKGY  GG+LFLPSYVMRTHGSR+QQDA+KSVPR Q+
Sbjct: 394  IGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQL 453

Query: 1288 QKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQN 1467
            QKVFEALDTLG TKWR+N+R+L+VVE++WARGGN+ GLVDRE+VP+PEK  +ED TEIQN
Sbjct: 454  QKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQN 513

Query: 1468 WRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHL 1647
            W+W+  KAKK N+ERH+ RCD E+KLSVARKMK+EEGFYYPHNLDFRGRAYPMHPHLNHL
Sbjct: 514  WKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 573

Query: 1648 SSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSA 1827
            SSDLCRGVLEFAEG+PLGK+GLRWLKI LANLYAGG+EKLSYDGR+ FV+NHL D+ DSA
Sbjct: 574  SSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSA 633

Query: 1828 EKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALG 2007
            + P+ G RWWL AEDPFQCLAACINLSEAL+S+SPHTV SHLPIHQDGSCNGLQHYAALG
Sbjct: 634  DNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALG 693

Query: 2008 RXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKL 2187
            R            GEKPADVYSEIAARV  I+KRD  KDPAT P ALLA++LI QVDRKL
Sbjct: 694  RNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKL 753

Query: 2188 VKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDAR 2367
            VKQTVMTSVYGVTY+GAREQIKRRL EKG ITD+RLLF+A+CYAAKVT+ ALGE+FQ AR
Sbjct: 754  VKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAAR 813

Query: 2368 SIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDV 2547
             IM WLG+CAKVIASENQPV+WTTPLGLPV+QPY KSERHLIRTSLQVLALQREG  V +
Sbjct: 814  DIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVI 873

Query: 2548 KRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFI 2727
            ++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVDKMNQILREKF+
Sbjct: 874  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFV 933

Query: 2728 ELY 2736
            ELY
Sbjct: 934  ELY 936


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1271 bits (3289), Expect = 0.0
 Identities = 626/885 (70%), Positives = 730/885 (82%), Gaps = 22/885 (2%)
 Frame = +1

Query: 148  SVNSHLGSLQFPTLSDPIDETPIENLQ------------------ESITRIFVEDPPWIS 273
            ++NS     +F  L D + +  +EN++                  ES  R+F++DPPWIS
Sbjct: 54   NLNSPPNPARFCPLHDSLHDNFVENIENPSNFLLPKAQSHQILSPESTPRLFIQDPPWIS 113

Query: 274  DFL--STPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXK 447
                    KM ++  K+  ++++ RKYN LR RQ+K ETEAW                 K
Sbjct: 114  ALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKK 173

Query: 448  LAPNLPYVKSLFLGWFGPFKEAIAEEQRLQK--TKKQKAAYAPHIDLLPADKMAVIVMHK 621
            LAPNLPYVK LFLGWF P +EAIA EQ++QK  +KK +AAYAPHI+LLPADKMAVIVMHK
Sbjct: 174  LAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHK 233

Query: 622  MMGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKE 801
            MMGL+M  QE G V+VVQAAVHIG AIE EVRIHNFLE+TK +Q  K    D+ + +SKE
Sbjct: 234  MMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT--DEVQGLSKE 291

Query: 802  QEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVN 981
            +EIL+KRV +LI++++L+EVQKLVK+ ++ K WGRDAQAKLGSRL+ELL ETAYVQPP++
Sbjct: 292  KEILKKRVNSLIRRRRLVEVQKLVKN-EEIKPWGRDAQAKLGSRLLELLTETAYVQPPID 350

Query: 982  QLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPML 1161
            Q  DSPP++ PAFRH FKTI+ +PG++  +RYGV+ECD L+  GLDR+A++M++PYVPML
Sbjct: 351  QSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPML 410

Query: 1162 IPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVN 1341
            +PPKKWKGY  GG+LFLPSYVMRTHGSR+QQDA+K V   +MQKVFEALDTLG TKWRVN
Sbjct: 411  VPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVN 470

Query: 1342 KRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQ 1521
            K++LAVVE++WA GGN+AGLVDR D+PIPEK  SED TE Q W+WSV KA K NRERH+Q
Sbjct: 471  KKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQ 530

Query: 1522 RCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLG 1701
            RCD ELKLSVARKM+NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG+PLG
Sbjct: 531  RCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 590

Query: 1702 KTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQ 1881
            ++GL WLKIHLANL+AGG+EKLS+DGR+ FV+NHL DI DSAE PI G RWWL AEDPFQ
Sbjct: 591  RSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQ 650

Query: 1882 CLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPA 2061
            CLAACINLSE+LKS+SPH+V S+LPIHQDGSCNGLQHYAALGR            GEKPA
Sbjct: 651  CLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPA 710

Query: 2062 DVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGAR 2241
            DVYSEIA RV NI+KRD +KDPAT P A LA++LIDQVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 711  DVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAR 770

Query: 2242 EQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQ 2421
            EQIKRRLEEKG ITDDR+LF+A+CY AKVT+ ALGE+FQ AR+IMGWLGDCAKVIASENQ
Sbjct: 771  EQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQ 830

Query: 2422 PVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGS 2601
            PV+WTTPLGLPVVQPY KSERHLIRTSLQVLALQREGD V+V++QRTAFPPNFVHSLDGS
Sbjct: 831  PVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGS 890

Query: 2602 HMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            HMMMTAVACRD+GLHFAGVHDSFWTHA DV+KMNQILREKF+ELY
Sbjct: 891  HMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELY 935


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1271 bits (3289), Expect = 0.0
 Identities = 627/916 (68%), Positives = 737/916 (80%), Gaps = 19/916 (2%)
 Frame = +1

Query: 46   WRRGGRTHE-KSFKDQHLLFNLSSNIQ--FSKSKLNQSVNSHLG------SLQFPTLSDP 198
            WRR  + +  KS K  H LFN +SN    F K  L+ S +  L        +QF  L+D 
Sbjct: 17   WRRPPKLNPTKSLKTLHFLFNSTSNSNSLFFKPSLSSSTHFPLSLRPPPDPIQFHPLNDS 76

Query: 199  IDETPIENLQESIT--------RIFVEDPPWISDFLSTP--KMNDREEKLGFQKMDTRKY 348
            + +  +ENL+ SI         RIF++DPPWI+        K  ++E K+  +++D RKY
Sbjct: 77   VQDNLVENLENSIKFQVPISEPRIFIQDPPWIASLFLKGMFKKVNKELKVESKEIDRRKY 136

Query: 349  NTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQ 528
            N LR RQIK ETEAW                 KLAP+LPYVK+LFLGWF P +EAIA+EQ
Sbjct: 137  NLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQ 196

Query: 529  RLQKTKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLMVGQEEGSVRVVQAAVHIGEAIEH 708
            + Q+TKK K A+APHIDLLPADKMA+IVMHK+MGL+M+G ++G V+VVQAAVHIG AIE 
Sbjct: 197  KAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQDGCVQVVQAAVHIGMAIEQ 256

Query: 709  EVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADD 888
            EVRIH+FLE++K  Q  K    D+ + +SKE+EILRKRV  LI++++L+EVQKL+K  +D
Sbjct: 257  EVRIHSFLEKSKSLQRKKTSVADE-DGLSKEKEILRKRVNGLIRRKRLVEVQKLLKK-ED 314

Query: 889  RKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAG 1068
             K WGRD QAKLGSRL+ELL ETA+VQPP++QLAD PP++ PAFRH  K     PG++  
Sbjct: 315  MKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLV 374

Query: 1069 RRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQ 1248
            + YGV+ECD LV  GLD+TA++M++PYVPML+PPK+WKGY  GGHLFLPSYVMRTHGSR+
Sbjct: 375  KNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRK 434

Query: 1249 QQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIP 1428
            Q D ++++   QMQKVFEALD LG TKWR+NK++L VVE++WARGGN+AGLVDREDVP+P
Sbjct: 435  QVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVP 494

Query: 1429 EKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFR 1608
            EK  SEDPTEIQ WRWS  KAKK N+ERH+QRCD ELKLSVAR+MK+E+GFYYPHNLDFR
Sbjct: 495  EKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFR 554

Query: 1609 GRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRIT 1788
            GRAYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKIHLANLY+GG+EKLSYDGRI+
Sbjct: 555  GRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRIS 614

Query: 1789 FVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQD 1968
            FV+NH+ DI DSA  P+ G RWWL AEDP QCLAACINLSEAL S SPHTV SHLPIHQD
Sbjct: 615  FVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQD 674

Query: 1969 GSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAAL 2148
            GSCNGLQHYAALGR            GEKPADVYSEIA RV +I+KRD  KDP T P AL
Sbjct: 675  GSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNAL 734

Query: 2149 LARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKV 2328
            LA++L++Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDRLLF+A+CYAAKV
Sbjct: 735  LAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKV 794

Query: 2329 TMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQ 2508
            T+ ALGE+FQ AR IM WLGDCAKVIASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQ
Sbjct: 795  TLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQ 854

Query: 2509 VLALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGD 2688
            VLALQRE + VDV++QRTAFPPNFVHSLDGSHMMMTA+ACRD+G+ FAGVHDSFWTHA D
Sbjct: 855  VLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACD 914

Query: 2689 VDKMNQILREKFIELY 2736
            VD+MNQILRE F+ELY
Sbjct: 915  VDQMNQILRENFVELY 930


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1261 bits (3262), Expect = 0.0
 Identities = 629/930 (67%), Positives = 735/930 (79%), Gaps = 26/930 (2%)
 Frame = +1

Query: 25   QAQIH---DKWRRGGRTHEKSFKDQHLLFNLSSNIQFSKSKLNQSVNSHLG------SLQ 177
            QAQ +    +W +  + + K       LF+ +SN  F K   + S +  L        + 
Sbjct: 12   QAQTYTCSSRWSKAPKLNHK------FLFSSTSNSLFFKPSHSSSTHFPLNLKPPPEPVH 65

Query: 178  FPTLSDPIDETPIENL---------------QESITRIFVEDPPWISDFL--STPKMNDR 306
             P L D I +  +EN                QES  RIF++DPPWI+        K  ++
Sbjct: 66   IPPLRDSIQDNIVENSMNFQIPMSEFHLITPQESAPRIFIQDPPWIASLFLKGIYKRANQ 125

Query: 307  EEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFL 486
            E KL  ++++ R YN LR RQIK ETEAW                 KLAPNLPYVK+LFL
Sbjct: 126  ELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLAPNLPYVKALFL 185

Query: 487  GWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLMVGQEEGSVR 666
            GWF P +EAIA EQ+ Q+TKK KAA+APHIDLLPADKMA+IVMHKMMGL+MVG ++G V+
Sbjct: 186  GWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGLVMVGNQDGCVQ 245

Query: 667  VVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQ 846
            VVQAAVHIG AIE EVRIH+FLE+TK  Q  K    D+ + +SKE+EILRKRV  LI+++
Sbjct: 246  VVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADE-DGLSKEKEILRKRVNGLIRRK 304

Query: 847  KLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRH 1026
            +L EVQKL+   ++ K WGRD QAKLGSRL+ELL ETAYVQPP++QLADSPP++ PAFRH
Sbjct: 305  RLNEVQKLLIK-EEMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLADSPPDVRPAFRH 363

Query: 1027 TFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHL 1206
             FK +   PG++  + YGV+ECD LV  GLD+TA++M++PYVPML+PPK+WKGY  GGHL
Sbjct: 364  RFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHL 423

Query: 1207 FLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGG 1386
            FLPSYVMRTHGSR+Q DA++++ R QMQKVFEALD LG TKWRVNK++L+VVE++WARGG
Sbjct: 424  FLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVESIWARGG 483

Query: 1387 NVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMK 1566
            N+AGLV+REDVP+P+K  SED  EIQ W+WSV KAKK N+ERH+QRCD ELKLSVARKMK
Sbjct: 484  NIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMK 543

Query: 1567 NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLY 1746
            +EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKIHLANLY
Sbjct: 544  DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLY 603

Query: 1747 AGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKST 1926
            AGG+EKLSY+GR+ FV+NH+ DI DSA  P+ G RWWL AEDP QCLAACINLSEAL S 
Sbjct: 604  AGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSP 663

Query: 1927 SPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIK 2106
            SPHTV SHLPIHQDGSCNGLQHYAALGR            G+KPADVYSEIAARV  I+K
Sbjct: 664  SPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMK 723

Query: 2107 RDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITD 2286
            RD  KDP T P ALLARIL++Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITD
Sbjct: 724  RDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITD 783

Query: 2287 DRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQP 2466
            DRLLF+A+CYAAKVT+ ALGE+FQ AR IM WLGDCAKVIASENQPV+WTTPLGLPVVQP
Sbjct: 784  DRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQP 843

Query: 2467 YRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLH 2646
            Y KSERHLIRTSLQVLALQRE + VD+++QRTAFPPNFVHSLDGSHMMMTA+ACRD+GL 
Sbjct: 844  YCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLR 903

Query: 2647 FAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            FAGVHDSFWTH  DVD+MN+ILREKF+ELY
Sbjct: 904  FAGVHDSFWTHPCDVDQMNEILREKFVELY 933


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1249 bits (3233), Expect = 0.0
 Identities = 606/832 (72%), Positives = 705/832 (84%)
 Frame = +1

Query: 241  RIFVEDPPWISDFLSTPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXX 420
            RIFV+DPPW S       +  R +   +++M  RK+N LR RQ+K ETEAW         
Sbjct: 138  RIFVQDPPWFSSIF-LKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKE 196

Query: 421  XXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKM 600
                    +LAPNLP++K LFLGWFGP +EAI  EQ++Q+TKKQKAAYAPHI+LLPADK+
Sbjct: 197  LEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIELLPADKV 256

Query: 601  AVIVMHKMMGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDK 780
            AVIVMHKMMGL+M G E+  V+VVQAAVHIG AIE E+RIH+FLE+TK ++  K +  D 
Sbjct: 257  AVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR-KKIIADT 315

Query: 781  HEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETA 960
             E +SKE+E+LRKRV +LIK ++++E QKL+K+ ++ K WGRD QAKLGSRLVELLIETA
Sbjct: 316  EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETA 374

Query: 961  YVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMV 1140
            YVQ PVN    SPP++ PAFRH FKTI   PG++  +RYGVVECD LV  GLDR+A++M+
Sbjct: 375  YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHML 434

Query: 1141 VPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLG 1320
            +PYVPML+PPKKWKGY  GG+LFLPSYVMRTHGSR+QQ+A+KSV    M+KVFEALDTLG
Sbjct: 435  IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 494

Query: 1321 RTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKC 1500
             TKWRVNK++L+V+E++W  GGN+AGLVDR DVPIPEK  SED TE+Q W+WSV KAKK 
Sbjct: 495  STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKI 554

Query: 1501 NRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1680
            N+ERH+QRCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEF
Sbjct: 555  NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 614

Query: 1681 AEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWL 1860
            AEG+PLGK+GLRWLKIHLANL++GG+EKLS+DGR+ FVENHL++I DSAE PI G RWWL
Sbjct: 615  AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 674

Query: 1861 NAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXX 2040
             AEDPFQCLAACINLSEALKS+SPH+V SHLPIHQDGSCNGLQHYAALGR          
Sbjct: 675  TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 734

Query: 2041 XXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYG 2220
              GEKPADVYSEIA RV  I+KRD  KDP+ +P ALLA+ILIDQVDRKLVKQTVMTSVYG
Sbjct: 735  VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 794

Query: 2221 VTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAK 2400
            VT+VGAREQIKRRLEEKG ITDDR LF+A+CYAAKVT+TALGE+F+ ARSIMGWLGDCAK
Sbjct: 795  VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 854

Query: 2401 VIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNF 2580
            VIASENQPV+WTTPLGLPVVQPY K+ERHLIRTSLQVLALQREG  V++++QRTAFPPNF
Sbjct: 855  VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNF 914

Query: 2581 VHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            VHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DVD+MNQILR+KF+ELY
Sbjct: 915  VHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELY 966


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 612/884 (69%), Positives = 720/884 (81%), Gaps = 6/884 (0%)
 Frame = +1

Query: 103  NLSSNIQFSKSKLNQSVNSHLGSLQFPTLSDPIDETPIENLQESIT------RIFVEDPP 264
            N+ +++ F      Q  N H       T +DP+      +    +       RIFV+DPP
Sbjct: 89   NIENSVDFHIPTCEQEQNFHQRVENIETCADPVIPRSENSTNHQLMCLEPRRRIFVQDPP 148

Query: 265  WISDFLSTPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXX 444
            W S       +  R +   +++M  RK+N LR RQ+K ETEAW                 
Sbjct: 149  WFSSIF-LKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEK 207

Query: 445  KLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKMAVIVMHKM 624
            +LAPNLP++K LFLGWFGP  EAI  EQ++Q+TKKQKAAYAPHI+LLPADKMAVIVMHKM
Sbjct: 208  RLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKMAVIVMHKM 267

Query: 625  MGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQ 804
            MGL+M G E+  V+VVQAAVHIG AIE E+RIH+FLE+TK ++  K +  D  E +SKE+
Sbjct: 268  MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR-KKIIADTEEVLSKEK 326

Query: 805  EILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQ 984
            E+LRKRV +LIK ++++E QKL+K+ ++ K WGRD QAKLGSRLVELLIETAYVQ PVN 
Sbjct: 327  ELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385

Query: 985  LADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLI 1164
               SPP++ PAFRH FKTI   PG++  +RYGVVECD LV +GLDR+A++M++PYVPML+
Sbjct: 386  ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445

Query: 1165 PPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNK 1344
            PPKKWKGY  GG+LFLPSYVMRTHGSR+QQ+A+KSV    M+KVFEALDTLG TKWRVNK
Sbjct: 446  PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNK 505

Query: 1345 RLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQR 1524
            ++L+V+E++W  GGN+AGLVDR DV IPEK  SED TE+Q W+WSV KAKK N+ERH+QR
Sbjct: 506  QVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565

Query: 1525 CDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGK 1704
            CD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEG+PLGK
Sbjct: 566  CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625

Query: 1705 TGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQC 1884
            +GLRWLKIHLANL++GG+EKLS+DGR+ FVENHL++I DSAE PI G RWWL AEDPFQC
Sbjct: 626  SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685

Query: 1885 LAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPAD 2064
            LAACINL+EALKS+SPH+V SHLPIHQDGSCNGLQHYAALGR            GEKPAD
Sbjct: 686  LAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745

Query: 2065 VYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGARE 2244
            VYSEIA RV  I+KRD  KD + +P ALLA+ILIDQVDRKLVKQTVMTSVYGVT+VGARE
Sbjct: 746  VYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805

Query: 2245 QIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQP 2424
            QIKRRLEEKG ITDDR LF+A+CYAAKVT+TALGE+F+ ARSIMGWLGDCAKVIASENQP
Sbjct: 806  QIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP 865

Query: 2425 VKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSH 2604
            V+WTTPLGLPVVQPY K+ERHLIRTSLQVLALQREG+ V++++QRTAFPPNFVHSLDGSH
Sbjct: 866  VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSH 925

Query: 2605 MMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            MMMTAVACRD+GLHFAGVHDSFWTHA DVD+MNQILR+KF+ELY
Sbjct: 926  MMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELY 969


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 607/838 (72%), Positives = 699/838 (83%), Gaps = 2/838 (0%)
 Frame = +1

Query: 229  ESITRIFVEDPPWISDFL--STPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXX 402
            ES  ++F++DPPWIS        K+ +++ K+ F+ ++ RKYN LR RQI+ ETEAW   
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERM 63

Query: 403  XXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDL 582
                          KLAPNLPYVK L LGWF P KEAI +EQ+++K+KKQK+A++P+I+L
Sbjct: 64   ADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIEL 123

Query: 583  LPADKMAVIVMHKMMGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLK 762
            LPADKMAVIVMHKMMGLLMVG E+G VRVVQAAV IG AIE EVRIHNFLE+TK +Q  K
Sbjct: 124  LPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKK 183

Query: 763  NVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVE 942
             +  +  E + KE+E+LRKRV +LI++++L+EVQ LVK  D+ K W R  QAKLGSRL+E
Sbjct: 184  TMH-EVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQ-DETKPWSRGTQAKLGSRLIE 241

Query: 943  LLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDR 1122
            LL ETAYVQPPVNQ  D PP++ PAFRH FKT+T  PG++  ++YGV+ECD L+  GLD 
Sbjct: 242  LLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDG 301

Query: 1123 TARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFE 1302
            TA++M++PY PML+PPKKWKGY  GGHLFLPSYVMRTHGSRQQQ A++SVP  QMQKVFE
Sbjct: 302  TAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFE 361

Query: 1303 ALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSV 1482
            ALDTLG TKWRVN+RLL VVE +W  GGN+AGLVDRED+PIPEK  S+D TEIQ W+WSV
Sbjct: 362  ALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSV 421

Query: 1483 GKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 1662
             KAKK N+ERH+QRCD ELKLSVARK+K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLC
Sbjct: 422  RKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLC 481

Query: 1663 RGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIE 1842
            RGVLEF EG+PLGK+GLRWLKIHLANLY+GG+EKLS+DGR+ FVENHL +I DSA+ P+ 
Sbjct: 482  RGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVN 541

Query: 1843 GKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXX 2022
            GKRWWL AEDPFQCLAACINLSEAL S SPHTV SHLPIHQDGSCNGLQHYAALGR    
Sbjct: 542  GKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLE 601

Query: 2023 XXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTV 2202
                     EKP+DVYSEIA RV  II+RD  KDPAT P ALLA+IL+DQVDRKLVKQTV
Sbjct: 602  AAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTV 661

Query: 2203 MTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGW 2382
            MTSVYGVTYVGAREQIKRRLEEKG ITDDRLLFSA+CY AKVT+TALGE+FQ AR IM W
Sbjct: 662  MTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSW 721

Query: 2383 LGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRT 2562
            LGDCAK+IASE+QPV+WTTPLGLPVVQPY K+ERHLI+TSLQ+LALQREG  V V++QRT
Sbjct: 722  LGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRT 781

Query: 2563 AFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            AFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVD MN+ILREKF+ELY
Sbjct: 782  AFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELY 839


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1246 bits (3224), Expect = 0.0
 Identities = 608/817 (74%), Positives = 701/817 (85%), Gaps = 3/817 (0%)
 Frame = +1

Query: 295  MNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVK 474
            M ++  K+  ++++ RKYN LR RQ+K ETEAW                 KLAPNLPYVK
Sbjct: 1    MTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVK 60

Query: 475  SLFLGWFGPFKEAIAEEQRLQK--TKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLMVGQ 648
             LFLGWF P +EAIA EQ++QK  +KK +AAYAPHI+LLPADKMAVIVMHKMMGL+M  Q
Sbjct: 61   GLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQ 120

Query: 649  EEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVK 828
            E G V+VVQAAVHIG AIE EVRIHNFLE+TK +Q  K    D+ + +SKE+EIL+KRV 
Sbjct: 121  ENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT--DEVQGLSKEKEILKKRVN 178

Query: 829  NLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEI 1008
            +LI++++L+EVQKLVK+ ++ K WGRDAQAKLGSRL+ELL ETAYVQPP++Q  DSPP++
Sbjct: 179  SLIRRRRLVEVQKLVKN-EEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDV 237

Query: 1009 WPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGY 1188
             PAFRH FKTI+ +PG++  +RYGV+ECD L+  GLDR+A++M++PYVPML+PPKKWKGY
Sbjct: 238  QPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGY 297

Query: 1189 ANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVET 1368
              GG+LFLPSYVMRTHGSR+QQDA+K V   +MQKVFEALDTLG TKWRVNK++LAVVE+
Sbjct: 298  DKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVES 357

Query: 1369 LWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLS 1548
            +WA GGN+AGLVDR D+PIPEK  SED TE Q W+WSV KA K NRERH+QRCD ELKLS
Sbjct: 358  IWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLS 417

Query: 1549 VARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKI 1728
            VARKM+NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG+PLG++GL WLKI
Sbjct: 418  VARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKI 477

Query: 1729 HLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLS 1908
            HLANL+AGG+EKLS+DGR+ FV+NHL DI DSAE PI G RWWL AEDPFQCLAACINLS
Sbjct: 478  HLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLS 537

Query: 1909 EALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAAR 2088
            E+LKS+SPH+V S+LPIHQDGSCNGLQHYAALGR            GEKPADVYSEIA R
Sbjct: 538  ESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVR 597

Query: 2089 VLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 2268
            V NI+KRD +KDPAT P A LA++LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEE
Sbjct: 598  VHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 657

Query: 2269 KGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLG 2448
            KG ITDDR+LF+A+CY AKVT+ ALGE+FQ AR+IMGWLGDCAKVIASENQPV+WTTPLG
Sbjct: 658  KGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLG 717

Query: 2449 LPVVQPYRKSERHLIRTSLQVLALQREGD-FVDVKRQRTAFPPNFVHSLDGSHMMMTAVA 2625
            LPVVQPY KSERHLIRTSLQVLALQREGD  V+V++QRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 718  LPVVQPYYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVA 777

Query: 2626 CRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            CRD+GLHFAGVHDSFWTHA DV+KMNQILREKF+ELY
Sbjct: 778  CRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELY 814


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1239 bits (3206), Expect = 0.0
 Identities = 621/916 (67%), Positives = 721/916 (78%), Gaps = 30/916 (3%)
 Frame = +1

Query: 79   FKDQHLLFNLSSNIQFSKSKLNQS--VNSHLGSLQFPTLSDPIDETPIENLQE------- 231
            +K+ H L N SS+   + S  + S  +N  L  L  P L  P+ ++  + L E       
Sbjct: 26   YKNLHFLSNPSSHSLSNPSLSSSSFPLNPKLSILNPPLLFHPLHDSSHDRLLEDFEIPTI 85

Query: 232  -------------------SITRIFVEDPPWISDFL--STPKMNDREEKLGFQKMDTRKY 348
                               S  R+F+ D PWIS      T K+ +++ KL  + ++ RKY
Sbjct: 86   NNHQKLETLIKFDQIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKY 145

Query: 349  NTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQ 528
            N LR RQI+ ETEAW                 KLAPNLPYVKSLFLGWF P KEAI  EQ
Sbjct: 146  NLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQ 205

Query: 529  RLQKTKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLMVGQEEGSVRVVQAAVHIGEAIEH 708
            +L+K+KKQK+A++P+I+LLPADKMAVIVMHKMMGL+MVG E+G VRVVQAAV IG AIE 
Sbjct: 206  KLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQ 265

Query: 709  EVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADD 888
            EVRIHNFLE+TK  Q  K +  D  E + KE+E+LRKRV +LI++++L+EVQ LV   D+
Sbjct: 266  EVRIHNFLEKTKNHQRKKTMH-DVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQ-DE 323

Query: 889  RKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAG 1068
             K W RD QAKLGSRL+ELL ETAYVQPPV+Q    PP++ PAFRH FK++T  PG++  
Sbjct: 324  TKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTV 383

Query: 1069 RRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQ 1248
            ++YGV+ECD L+  GLD TA++M++PY PML+PPKKW+GY  GGHLFLPSY+MRTHGSRQ
Sbjct: 384  KKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQ 443

Query: 1249 QQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIP 1428
            QQDA++SVP  QMQKVFEALDTLG TKWRVN ++L VVE +WA GGN AGLV+R D+PIP
Sbjct: 444  QQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIP 503

Query: 1429 EKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFR 1608
            EK  S+D TEIQ W+WSV KAKK N+ERH+QRCD ELKLSVARK+K+EEGFYYPHNLDFR
Sbjct: 504  EKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFR 563

Query: 1609 GRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRIT 1788
            GRAYPMHPHL HLSSDLCRGVLEFAEG+PLGK+GL WLKIHLANLY+GG+EKLS+DGR+ 
Sbjct: 564  GRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLA 623

Query: 1789 FVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQD 1968
            FVENHL +I DSAE P+ GKRWWL AEDPFQCLAACINLSEALKS SPHTV SHLPIHQD
Sbjct: 624  FVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQD 683

Query: 1969 GSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAAL 2148
            GSCNGLQHYAALGR             EKP+DVYSEIA RV  II+RD  KDPAT P AL
Sbjct: 684  GSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHAL 743

Query: 2149 LARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKV 2328
            LA++LID+VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDR+LFSA+CYAAKV
Sbjct: 744  LAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKV 803

Query: 2329 TMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQ 2508
            T+TALGE+FQ AR IMGWLGDCAKVIASE+QPV+WTTPLGLPVVQPY K++RHLIRTSLQ
Sbjct: 804  TLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQ 863

Query: 2509 VLALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGD 2688
            VLALQREG  V V++QRTAFPPNFVHSLDGSHMMMTAVACRD+ L FAGVHDSFWTHA D
Sbjct: 864  VLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARD 923

Query: 2689 VDKMNQILREKFIELY 2736
             D MN+ILREKF+ELY
Sbjct: 924  ADLMNRILREKFVELY 939


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1224 bits (3168), Expect = 0.0
 Identities = 596/764 (78%), Positives = 674/764 (88%)
 Frame = +1

Query: 445  KLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKMAVIVMHKM 624
            KLAPNLPYVK+LFLGWF P +EAI +EQR Q+TKKQKAAYAPHI+LLPADKMAVIVMHKM
Sbjct: 5    KLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKM 64

Query: 625  MGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQ 804
            MGL+M+G EEG VRVVQAAV IG AIE EVRIH+FLE+TK F+  K V G   E + +E+
Sbjct: 65   MGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTV-GHSQEGL-REK 122

Query: 805  EILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQ 984
            EILRKRVK+ I+K+K+IEVQKLVK+ ++   WGRD QAKLGSRL+ELL ETAYVQ PVNQ
Sbjct: 123  EILRKRVKSFIRKKKIIEVQKLVKN-EEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQ 181

Query: 985  LADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLI 1164
             AD PP++ PAFRHTFKT+T E G++  R+YGV+ECD LV  GLDRTA++MV+PYVPMLI
Sbjct: 182  SADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLI 241

Query: 1165 PPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNK 1344
            PPKKWKGY  GG+LFLPSYVMRTHGSR+QQDA+KSVPR Q+QKVFEALDTLG TKWR+N+
Sbjct: 242  PPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINR 301

Query: 1345 RLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQR 1524
            R+L+VVE++WARGGN+ GLVDRE+VP+PEK  +ED TEIQNW+W+  KAKK N+ERH+ R
Sbjct: 302  RVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLR 361

Query: 1525 CDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGK 1704
            CD E+KLSVARKMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG+PLGK
Sbjct: 362  CDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 421

Query: 1705 TGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQC 1884
            +GLRWLKI LANLYAGG+EKLSYDGR+ FV+NHL D+ DSA+ P+ G RWWL AEDPFQC
Sbjct: 422  SGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQC 481

Query: 1885 LAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPAD 2064
            LAACINLSEAL+S+SPHTV SHLPIHQDGSCNGLQHYAALGR            GEKPAD
Sbjct: 482  LAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPAD 541

Query: 2065 VYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGARE 2244
            VYSEIAARV  I+KRD  KDPAT P ALLA++LI QVDRKLVKQTVMTSVYGVTY+GARE
Sbjct: 542  VYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGARE 601

Query: 2245 QIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQP 2424
            QIKRRL EKG ITD+RLLF+A+CYAAKVT+ ALGE+FQ AR IM WLG+CAKVIASENQP
Sbjct: 602  QIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQP 661

Query: 2425 VKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSH 2604
            V+WTTPLGLPV+QPY KSERHLIRTSLQVLALQREG  V +++QRTAFPPNFVHSLDGSH
Sbjct: 662  VQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSH 721

Query: 2605 MMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            MMMTAVACRD+GL FAGVHDSFWTHA DVDKMNQILREKF+ELY
Sbjct: 722  MMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELY 765


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score = 1218 bits (3152), Expect = 0.0
 Identities = 613/895 (68%), Positives = 712/895 (79%), Gaps = 18/895 (2%)
 Frame = +1

Query: 106  LSSNIQFSKSKLNQSVNSHLGSLQFPTL------SDPIDET------PIENLQESITRIF 249
            LS + QFS S   Q  N  L SL  P L      SD  D+        +  LQES  R+F
Sbjct: 9    LSQSPQFSSSSFPQ--NLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQESKDRVF 66

Query: 250  VEDPPWISD-FLSTPKMNDREE---KLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXX 417
            ++DPPWIS  F+       R     K+ FQ+M+ RKY  LR RQ+K ETEAW        
Sbjct: 67   IQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKVEEYR 126

Query: 418  XXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADK 597
                     KLAPNLPYVK L LGWF P +EAI +EQ  Q++KK KAA+AP ID LPADK
Sbjct: 127  ELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALPADK 186

Query: 598  MAVIVMHKMMGLLMVG-QEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEG 774
            MAVIVMHKMMGLLM+G +E+  VRVV+AAV IG A+E+EVRIH+FLE+ KK +  K   G
Sbjct: 187  MAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNE--KREIG 244

Query: 775  DKHE-DVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLI 951
            D+ + D S E  I+RKRVK+LIK+ ++IEV KLV+S ++ KSWGRD QAKLG  L+ELL 
Sbjct: 245  DESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRS-EEFKSWGRDIQAKLGCCLIELLT 303

Query: 952  ETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTAR 1131
            ++AYVQPPVNQ ADSPP++ PAFRH FK  T  PG+   +RYGV+ECD LV  GLD+T +
Sbjct: 304  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVK 363

Query: 1132 NMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALD 1311
            +M++PYVPML+PPKKWKGY  GG+LFLPSY+MRTHGSR QQDA+K+V   QMQKV+EALD
Sbjct: 364  HMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALD 423

Query: 1312 TLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKA 1491
            TLG TKWRVNKR+L VVE +WA GGN+AGLV+RED+PIPE   SED  E + W+WSV K 
Sbjct: 424  TLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKV 483

Query: 1492 KKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 1671
            KK N+ERH+QRCD ELKLSVARKMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV
Sbjct: 484  KKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 543

Query: 1672 LEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKR 1851
            LEFAEG+PLGK+GLRWLKIH+ANLY GG+EKLSYD R+ FVEN++ +I DSA+  + G R
Sbjct: 544  LEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNR 603

Query: 1852 WWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXX 2031
            WWL AEDPFQCLAACINL EALKS SPHTV SHLPIHQDGSCNGLQHYAALGR       
Sbjct: 604  WWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 663

Query: 2032 XXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTS 2211
                 G+KP+DVYSEIA RV NI+KRD EKDP T   AL+A++LI QVDRKLVKQTVMTS
Sbjct: 664  VNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMTS 723

Query: 2212 VYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGD 2391
            VYGVTYVGAREQIKRRLEEKG ITDD+LLFSA+CYAAKVT+ ALGE+FQ AR+IM WLGD
Sbjct: 724  VYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLGD 783

Query: 2392 CAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFP 2571
            CAK+IASEN+PV+WTTPLGLPVVQPY KS+RH+IRTSLQVLALQREGD V+V++QRTAFP
Sbjct: 784  CAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 843

Query: 2572 PNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            PNFVHSLDGSHMMMTA+ACRD+GL FAGVHDSFWTHA DVD+MNQILR+KF++LY
Sbjct: 844  PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLY 898


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1212 bits (3137), Expect = 0.0
 Identities = 597/849 (70%), Positives = 703/849 (82%), Gaps = 7/849 (0%)
 Frame = +1

Query: 211  PIENLQESITRIFVEDPPWISDFLSTPKMNDREEKLG----FQKMDTRK-YNTLRTRQIK 375
            P+   +ES  R+F++DPPW+S           ++  G    F++++ R+ Y  LR RQIK
Sbjct: 128  PLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIK 187

Query: 376  LETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQK 555
             ETEAW                 KLAPNLPYVK L LGWF P ++AI +EQ  + T+K +
Sbjct: 188  AETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHR 247

Query: 556  AAYAPHIDLLPADKMAVIVMHKMMGLLMVG-QEEGSVRVVQAAVHIGEAIEHEVRIHNFL 732
             AYAPHID LPADKMAVIVMHK+MGLLM+G +EE  V+VVQAAV IG A+E+EVRIHNF+
Sbjct: 248  TAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFM 307

Query: 733  ERTKKFQGLKNVEGDK-HEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRD 909
            E+TKK Q  K++ G +  ED+S+E  ILRKRVK+LIK+ +++EV+KL++S ++ +SWGRD
Sbjct: 308  EKTKKHQ--KHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQS-EEPESWGRD 364

Query: 910  AQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVE 1089
             QAKLG RL+ELL ETAYVQPPV+Q AD+PP+I PAFRH F+  T +PG+   ++YGV+E
Sbjct: 365  TQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIE 424

Query: 1090 CDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKS 1269
            CD LV  G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+QQDA++S
Sbjct: 425  CDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRS 484

Query: 1270 VPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSED 1449
            VP  QMQ+V+EALDTLG TKWRVNKR+L+VVE++WA GGN+AGLVDR+DVPIPE  HS+D
Sbjct: 485  VPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDD 543

Query: 1450 PTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMH 1629
              E++ W+W V KAKK N+E H+QRCD ELKLSVARK+K+EEGFYYPHNLDFRGRAYPMH
Sbjct: 544  IMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMH 603

Query: 1630 PHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLF 1809
            PHLNHLSSDLCRG+LEFAEG+PLGK+GLRWLK+HLA+LYAGGIEKL YD RI FVENH+ 
Sbjct: 604  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHID 663

Query: 1810 DILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQ 1989
            DILDSA  P+ G RWWLNAEDP QCLAACINLSEALKS SPHTV SHLPIHQDGSCNGLQ
Sbjct: 664  DILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQ 723

Query: 1990 HYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILID 2169
            HYAALGR            GEKPADVY+EIA RV +II+ D  KDPAT P ALLA++LID
Sbjct: 724  HYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLID 783

Query: 2170 QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGE 2349
            QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT+ ALGE
Sbjct: 784  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGE 843

Query: 2350 MFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQRE 2529
            +FQ AR  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY K++RH+IRTSLQVLALQRE
Sbjct: 844  LFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 903

Query: 2530 GDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQI 2709
            GD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DVD+MN+I
Sbjct: 904  GDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRI 963

Query: 2710 LREKFIELY 2736
            LREKF+ELY
Sbjct: 964  LREKFVELY 972


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1211 bits (3132), Expect = 0.0
 Identities = 596/849 (70%), Positives = 702/849 (82%), Gaps = 7/849 (0%)
 Frame = +1

Query: 211  PIENLQESITRIFVEDPPWISDFLSTPKMNDREEKLG----FQKMDTRK-YNTLRTRQIK 375
            P+   +ES  R+F++DPPW+S           ++  G    F++++ R+ Y  LR RQIK
Sbjct: 120  PLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIK 179

Query: 376  LETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQK 555
             ETEAW                 KLAPNLPYVK L LGWF P ++AI  EQ  + T+K +
Sbjct: 180  AETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHR 239

Query: 556  AAYAPHIDLLPADKMAVIVMHKMMGLLMVG-QEEGSVRVVQAAVHIGEAIEHEVRIHNFL 732
             AYAPHID LPADKMAVIVMHK+MGLLM+G +EE  V+VVQAAV IG A+E+EVRIHNF+
Sbjct: 240  TAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFM 299

Query: 733  ERTKKFQGLKNVEGDK-HEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRD 909
            E+TKK Q  K++ G +  ED+S+E  ILRKRVK+LIK+ +++EV+KL++S ++ +SWGRD
Sbjct: 300  EKTKKHQ--KHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQS-EEPESWGRD 356

Query: 910  AQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVE 1089
             QAKLG RL+ELL ETAYVQPPV+Q AD+PP+I PAFRH F+  T +PG+   ++YGV+E
Sbjct: 357  TQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIE 416

Query: 1090 CDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKS 1269
            CD LV  G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+QQDA++S
Sbjct: 417  CDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRS 476

Query: 1270 VPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSED 1449
            VP  QMQ+V+EALDTLG TKWRVNKR+L+VVET+WA GGN+AGLVDR+DVPIPE  HS+D
Sbjct: 477  VPAKQMQQVYEALDTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPEL-HSDD 535

Query: 1450 PTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMH 1629
              E++ W+W V KAKK N+E H+QRCD ELKLSVARK+++EEGFYYPHNLDFRGRAYPMH
Sbjct: 536  IMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMH 595

Query: 1630 PHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLF 1809
            PHLNHLSSDLCRG+LEFAEG+PLGK+GLRWLK+HLA+LYAGGIEKL YD RI FVENH+ 
Sbjct: 596  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHID 655

Query: 1810 DILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQ 1989
            DILDSA  P+ G RWWLNAEDP QCLAACINLSEA+KS SPHTV SHLPIHQDGSCNGLQ
Sbjct: 656  DILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQ 715

Query: 1990 HYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILID 2169
            HYAALGR            GEKPADVY+EIA RV +II+ D  KDPAT P ALLA++LID
Sbjct: 716  HYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLID 775

Query: 2170 QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGE 2349
            QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT+ ALGE
Sbjct: 776  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGE 835

Query: 2350 MFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQRE 2529
            +FQ AR  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY K++RH+IRTSLQVLALQRE
Sbjct: 836  LFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 895

Query: 2530 GDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQI 2709
            GD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DVD+MN+I
Sbjct: 896  GDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRI 955

Query: 2710 LREKFIELY 2736
            LREKF+ELY
Sbjct: 956  LREKFVELY 964


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1210 bits (3130), Expect = 0.0
 Identities = 596/844 (70%), Positives = 701/844 (83%), Gaps = 7/844 (0%)
 Frame = +1

Query: 226  QESITRIFVEDPPWISDFLSTPKMNDREEKLG----FQKMDTRK-YNTLRTRQIKLETEA 390
            +ES  R+F++DPPW+S           ++  G    F++++ R+ Y  LR RQIK ETEA
Sbjct: 95   KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEA 154

Query: 391  WXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAP 570
            W                 KLAPNLPYVK L LGWF P ++AI +EQ  + T K +AA+AP
Sbjct: 155  WEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAP 214

Query: 571  HIDLLPADKMAVIVMHKMMGLLMVG-QEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKK 747
            HID LPADKMAVIVMHK+MGLLM+G +EE  V+VVQAAV IG A+E+EVRIHNFLE+TKK
Sbjct: 215  HIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 274

Query: 748  FQGLKNVEG-DKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKL 924
             Q  K++ G    ED+S+E  ILRKRVK+LIK+ +++EV+KL+KS ++ +SWGRD QAKL
Sbjct: 275  LQ--KHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS-EEPESWGRDTQAKL 331

Query: 925  GSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLV 1104
            G RL+ELL ETAYVQPPV+Q AD+PP+I PAFRH F+  T +PG+   ++YGV+ECD LV
Sbjct: 332  GCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLV 391

Query: 1105 RKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQ 1284
              G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+QQDA++SVP  Q
Sbjct: 392  VAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQ 451

Query: 1285 MQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQ 1464
            MQ+V+EALDTLG TKWRVNKR+L+VVE++WA GGN+AGLVDR+DVPIPE  HS+D  E++
Sbjct: 452  MQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEVK 510

Query: 1465 NWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNH 1644
             W+W V K+KK N+E H+QRCD ELKLSVARK+K+EEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 511  KWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNH 570

Query: 1645 LSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDS 1824
            LSSDLCRG+LEFAEG+PLGK+GLRWLKIHLA+LYAGGIEKL YD R+ FVENH+ DILDS
Sbjct: 571  LSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDS 630

Query: 1825 AEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAAL 2004
            A  P+ G RWWLNAEDPFQCLAACINLSEALKS+SPHTV SHLPIHQDGSCNGLQHYAAL
Sbjct: 631  ANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAAL 690

Query: 2005 GRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRK 2184
            GR            G+KPADVY+EIA RV +II+ D  KDPAT P ALLA++LIDQVDRK
Sbjct: 691  GRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRK 750

Query: 2185 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDA 2364
            LVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT+ ALGE+FQ A
Sbjct: 751  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAA 810

Query: 2365 RSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVD 2544
            R  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY K++RH+IRTSLQVLALQREGD V+
Sbjct: 811  RGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVE 870

Query: 2545 VKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKF 2724
            V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVD+MN+ILREKF
Sbjct: 871  VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKF 930

Query: 2725 IELY 2736
            +ELY
Sbjct: 931  VELY 934


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1209 bits (3127), Expect = 0.0
 Identities = 613/926 (66%), Positives = 719/926 (77%), Gaps = 22/926 (2%)
 Frame = +1

Query: 25   QAQIH--DKWRRGGRTHEKSFKDQHLLFNLSSNIQFSKSKLNQSVNSHLGSLQFPTLSDP 198
            QA IH  + W++  +   K  +  H  F  + N   S      + +S   SL    L+D 
Sbjct: 12   QAPIHGSNAWKKPTKRW-KCERKTHPSFTSTFNSPLSSVSFPVNFDSTSQSLHLQPLADS 70

Query: 199  IDETPIENLQ------------------ESITRIFVEDPPWISDFL--STPKMNDREEKL 318
            + E   E L                   ES  RIF++DPPWI+        K   +E KL
Sbjct: 71   VHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYKCVQKEVKL 130

Query: 319  GFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFG 498
             F +++ RKYN LR RQIK ETEAW                 KLAPNLPYVK LFLGWF 
Sbjct: 131  EFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFE 190

Query: 499  PFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLMVGQEEGSVRVVQA 678
            P K AI EEQ+ Q++KKQKAA+APHI+LL ADKMAVIVM+KMMGLLM+  ++G V+VVQA
Sbjct: 191  PLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQDGCVQVVQA 250

Query: 679  AVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIE 858
            AV IG AIE EVRI + LE+ +  Q  K V  D  E ++KE+E+LRK+V  LI+++KL E
Sbjct: 251  AVQIGGAIEQEVRIQSILEKARSNQRTK-VRADT-ECLTKEKEVLRKQVNGLIRRRKLKE 308

Query: 859  VQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKT 1038
            VQKL+K  ++ K+WGRD QAKLGSRL+ELLIE+A++QPPV+Q ADSPP+I PAF H FK 
Sbjct: 309  VQKLLKK-EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKP 367

Query: 1039 ITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPS 1218
            +   PG+   ++YGVVECD +V  GLDRTA++M++PY+PML+PPKKWKGY  GGH FLPS
Sbjct: 368  VAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPS 427

Query: 1219 YVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAG 1398
            YVMRTHGS +QQDA+K++   QMQKVFEALD LG TKWRVN+ +L+VVE+LWA+GGN AG
Sbjct: 428  YVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAG 487

Query: 1399 LVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEG 1578
            LVDR+DVPIPEK    D TE+Q WRWS+ KAKK N+E H+QRCD+ELKLSVARKMK+EEG
Sbjct: 488  LVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEG 546

Query: 1579 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGI 1758
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GL WLKIHLANLYAGG+
Sbjct: 547  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGV 606

Query: 1759 EKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHT 1938
            EKLSYD R+ FV++HL +I DSA  P+ G RWWL AEDPFQCLAAC+NLSEALKS++PHT
Sbjct: 607  EKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHT 666

Query: 1939 VTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCE 2118
            V S+LPIHQDGSCNGLQHYAALGR            GEKPADVYSEIAARV  I+ RD  
Sbjct: 667  VISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDAS 726

Query: 2119 KDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLL 2298
            KDP T P A LA++LIDQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG I+DDRL 
Sbjct: 727  KDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLR 786

Query: 2299 FSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKS 2478
            F ASCYAAKVT++ALGE+F+ AR IMGWLGDCAKVIA +NQPV+WTTPLGLPVVQPY KS
Sbjct: 787  FRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKS 846

Query: 2479 ERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGV 2658
            ERHLIRTSLQVLALQREG+ VDV++QRTAFPPNFVHSLDGSHMM+TA+ACRD+GL FAGV
Sbjct: 847  ERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGV 906

Query: 2659 HDSFWTHAGDVDKMNQILREKFIELY 2736
            HDSFWTHA DVD+MN ILREKF+ELY
Sbjct: 907  HDSFWTHACDVDRMNLILREKFVELY 932


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1208 bits (3126), Expect = 0.0
 Identities = 607/904 (67%), Positives = 714/904 (78%), Gaps = 37/904 (4%)
 Frame = +1

Query: 136  KLNQSVNSHLGSLQFP-TLSDPIDETPIENLQ---------------------------- 228
            KL+QS  S L +  FP TL  P+   PI N+Q                            
Sbjct: 36   KLSQS--SSLSTSSFPKTLKLPVIHMPINNIQSQTTVCVSTDENLEELVNLQKIPNGFLN 93

Query: 229  -ESITRIFVEDPPWISDFLSTPKMNDREEKLG----FQKMDTRK-YNTLRTRQIKLETEA 390
             ES  R+F++DPPW+S           ++  G    F++++ R+ Y  LR RQIK ETEA
Sbjct: 94   KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEA 153

Query: 391  WXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAP 570
            W                 KLAPNLPYVK L LGWF P ++AI +EQ  + T K +AA+AP
Sbjct: 154  WEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAP 213

Query: 571  HIDLLPADKMAVIVMHKMMGLLMVG-QEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKK 747
            HID LPADKMAVIVMHK+MGLLM+G +EE  V+VVQAAV IG A+E+EVRIHNFLE+TKK
Sbjct: 214  HIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 273

Query: 748  FQGLKNVEG-DKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKL 924
             Q  K++ G    ED+SKE  ILRKRVK+LIK+ +++EV+KL+KS ++ +SWGRD QAKL
Sbjct: 274  LQ--KHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKS-EEPESWGRDTQAKL 330

Query: 925  GSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLV 1104
            G RL+ELL ETAYVQ PV+Q AD+PP+I PAFRH FK  T +PG+   ++YGV+ECD LV
Sbjct: 331  GCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLV 390

Query: 1105 RKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQ 1284
              G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+QQDA++ VP  Q
Sbjct: 391  VAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQ 450

Query: 1285 MQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQ 1464
            MQ+V+EALDTLG TKWRVNKR+L VVE++WA GGN+AGLVDR+DVPIPE  +S+D  E++
Sbjct: 451  MQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVK 510

Query: 1465 NWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNH 1644
             W+W V K+KK N+E H+QRCD ELKLSVARK+K+EEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 511  KWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNH 570

Query: 1645 LSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDS 1824
            LSSDLCRG+LEFAEG+PLGK+GLRWLKIHLA+LYAGG+EKL YD R+ FVENH+ DILDS
Sbjct: 571  LSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDS 630

Query: 1825 AEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAAL 2004
            A  P+ G RWWLNAEDPFQCLAACINLSEALKS+SPHTV SHLPIHQDGSCNGLQHYAAL
Sbjct: 631  ANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAAL 690

Query: 2005 GRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRK 2184
            GR            GEKPADVY+EIA RV +II+ D  KDPA  P ALLA++LIDQVDRK
Sbjct: 691  GRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRK 750

Query: 2185 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDA 2364
            LVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT+ ALGE+FQ A
Sbjct: 751  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAA 810

Query: 2365 RSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVD 2544
            R  M WLGDCAKVIA ENQPV+WTTPLGLPVVQPY K++RH+IRTSLQ+LALQREGD V+
Sbjct: 811  RGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVE 870

Query: 2545 VKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKF 2724
            V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVD+MN+ILREKF
Sbjct: 871  VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKF 930

Query: 2725 IELY 2736
            +ELY
Sbjct: 931  VELY 934


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1207 bits (3122), Expect = 0.0
 Identities = 612/926 (66%), Positives = 718/926 (77%), Gaps = 22/926 (2%)
 Frame = +1

Query: 25   QAQIH--DKWRRGGRTHEKSFKDQHLLFNLSSNIQFSKSKLNQSVNSHLGSLQFPTLSDP 198
            QA IH  + W++  +   K  +  H  F  + N   S      + +S   SL    L+D 
Sbjct: 12   QAPIHGSNAWKKPTKRW-KCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQSLHLQPLADS 70

Query: 199  IDETPIENLQ------------------ESITRIFVEDPPWISDFL--STPKMNDREEKL 318
            + E   E L                   ES  RIF++DPPWI+        K   +E KL
Sbjct: 71   VHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYKCVQKEVKL 130

Query: 319  GFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPNLPYVKSLFLGWFG 498
             F +++ RKYN LR RQIK ETEAW                 KLAPNLPYVK LFLGWF 
Sbjct: 131  EFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFE 190

Query: 499  PFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLMVGQEEGSVRVVQA 678
            P K AI EEQ+ Q++KKQKAA+APHI+LL ADKMA IVM+KMMGLLM+  ++G V+VVQA
Sbjct: 191  PLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAAQDGCVQVVQA 250

Query: 679  AVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIE 858
            AV IG AIE EVRI + LE+ +  Q  K V  D  E ++KE+E+LRK+V  LI+++KL E
Sbjct: 251  AVQIGGAIEQEVRIQSILEKARSNQRTK-VRADT-ECLTKEKEVLRKQVNGLIRRRKLKE 308

Query: 859  VQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKT 1038
            VQKL+K  ++ K+WGRD QAKLGSRL+ELLIE+A++QPPV+Q ADSPP+I PAF H FK 
Sbjct: 309  VQKLLKK-EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKP 367

Query: 1039 ITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPS 1218
            +   PG+   ++YGVVECD +V  GLDRTA++M++PY+PML+PPKKWKGY  GGH FLPS
Sbjct: 368  VAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPS 427

Query: 1219 YVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAG 1398
            YVMRTHGS +QQDA+K++   QMQKVFEALD LG TKWRVN+ +L+VVE+LWA+GGN AG
Sbjct: 428  YVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAG 487

Query: 1399 LVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEG 1578
            LVDR+DVPIPEK    D TE+Q WRWS+ KAKK N+E H+QRCD+ELKLSVARKMK+EEG
Sbjct: 488  LVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEG 546

Query: 1579 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGI 1758
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GL WLKIHLANLYAGG+
Sbjct: 547  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGV 606

Query: 1759 EKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHT 1938
            EKLSYD R+ FV++HL +I DSA  P+ G RWWL AEDPFQCLAAC+NLSEALKS++PHT
Sbjct: 607  EKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHT 666

Query: 1939 VTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCE 2118
            V S+LPIHQDGSCNGLQHYAALGR            GEKPADVYSEIAARV  I+ RD  
Sbjct: 667  VISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDAS 726

Query: 2119 KDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLL 2298
            KDP T P A LA++LIDQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG I+DDRL 
Sbjct: 727  KDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLR 786

Query: 2299 FSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKS 2478
            F ASCYAAKVT++ALGE+F+ AR IMGWLGDCAKVIA +NQPV+WTTPLGLPVVQPY KS
Sbjct: 787  FRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKS 846

Query: 2479 ERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGV 2658
            ERHLIRTSLQVLALQREG+ VDV++QRTAFPPNFVHSLDGSHMM+TA+ACRD+GL FAGV
Sbjct: 847  ERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGV 906

Query: 2659 HDSFWTHAGDVDKMNQILREKFIELY 2736
            HDSFWTHA DVD+MN ILREKF+ELY
Sbjct: 907  HDSFWTHACDVDRMNLILREKFVELY 932


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1201 bits (3107), Expect = 0.0
 Identities = 601/939 (64%), Positives = 727/939 (77%), Gaps = 35/939 (3%)
 Frame = +1

Query: 25   QAQIHDKWRRGGRTHEKSFKDQH--LLFNLSSNIQFSKSKL----NQSVNSHLGSLQFPT 186
            Q QI  +WR+  ++H+K+ K  H  L   LSS     +  L    + S NS   +L  P+
Sbjct: 12   QVQIQKQWRKPLKSHKKASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSSNSFPSTLSLPS 71

Query: 187  LSDPIDET---------------PIENLQESI-------------TRIFVEDPPWISD-F 279
            L+  + +T               P E L E +             +RIF++DPPW++  F
Sbjct: 72   LTPKLGKTSFFQPSPQSQIILDSPEEELAEKMDGHFRNSDKIKGSSRIFMQDPPWVNTLF 131

Query: 280  LSTPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKLAPN 459
            +     ++   +L F++++  KYN LR RQIK ETEAW                 KLAPN
Sbjct: 132  MKGLVDSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPN 191

Query: 460  LPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQKAAYAPHIDLLPADKMAVIVMHKMMGLLM 639
            LP VK+LFLGWF P K+AI +EQ+ Q+++KQKA Y  HID+LPADKMAVIVMHKMM LLM
Sbjct: 192  LPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLM 251

Query: 640  VGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRK 819
            VG + G VR+VQAA+ IG AIE E++IH+FLE+TK  +  KN   D  ED+ KE+EI R 
Sbjct: 252  VGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIR--KNAS-DLPEDLLKEKEIQRN 308

Query: 820  RVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSP 999
            RVK+LIK+++L E  KLV S +D KSW +D QAKLGSRL+ELLI+TAY+Q P +Q AD+P
Sbjct: 309  RVKSLIKRKRLFEAAKLVTS-EDSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTP 367

Query: 1000 PEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKW 1179
            P++ PAFRH FK + NE G++  +RYGV+ECD LV KG+DR+AR M++PYVPMLIPPK W
Sbjct: 368  PDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNW 427

Query: 1180 KGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAV 1359
            KGY  GG+LFLPSYVMRTHGSR+QQDA++  P  QMQKVFEAL+TLG TKWR+N+++L V
Sbjct: 428  KGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGV 487

Query: 1360 VETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIEL 1539
            VE LWA GGN+ GLV+ +DVP+PEK  +EDP EI  W+WSV KAKK NRERHA RCD+EL
Sbjct: 488  VENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVEL 547

Query: 1540 KLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRW 1719
            K+SVA+KMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA G+PLGKTGL W
Sbjct: 548  KISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHW 607

Query: 1720 LKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACI 1899
            LKIHLAN+YAGG++KLSY+ R  FVENHL ++ DSA  PI G RWWL+AEDPFQCLAACI
Sbjct: 608  LKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACI 667

Query: 1900 NLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEI 2079
            +L+ AL S+SPH+  S+LPIHQDGSCNGLQHYAALGR            GE+PADVYSEI
Sbjct: 668  DLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEEPADVYSEI 727

Query: 2080 AARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRR 2259
            A RV  I+++D  KDP T P A+LA++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRR
Sbjct: 728  AVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 787

Query: 2260 LEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTT 2439
            LEEKG ITDDRLLFSA+CY+AKVTM+ALG++FQ AR IM WLGDCAKVIASENQPV+WTT
Sbjct: 788  LEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQPVRWTT 847

Query: 2440 PLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTA 2619
            PLGLPVVQPY KS+RHLI+TSLQVLALQ+EG+ ++VK+QRTAFPPN+VHSLDG+HMMMTA
Sbjct: 848  PLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMMTA 907

Query: 2620 VACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            VACRD+GL FAGVHDSFWTHA DV+KMNQILR KF+ELY
Sbjct: 908  VACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELY 946


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score = 1194 bits (3088), Expect = 0.0
 Identities = 585/884 (66%), Positives = 708/884 (80%), Gaps = 7/884 (0%)
 Frame = +1

Query: 106  LSSNIQFSKSKLNQSVN---SHLGSLQFPTLSDPIDETPIENLQESITRIFVEDPPWISD 276
            +S+++ F  + +    N   S+ G+++  +L + ++     N      R+F++DPPWIS 
Sbjct: 72   ISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQDPPWISA 131

Query: 277  FL--STPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKL 450
                   KM D+  K+  + +D RK+++LR RQ+K ETEAW                  L
Sbjct: 132  LFLKGLSKMVDQTVKIEHKYIDKRKFDSLRRRQVKEETEAWEKMVDEYRDLEKEMCEKNL 191

Query: 451  APNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQK--AAYAPHIDLLPADKMAVIVMHKM 624
            APNLPYVK +FLGWF P K+ I  EQ+LQK K +K  AAYAPHI+LLPADKMAVIVMHKM
Sbjct: 192  APNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKM 251

Query: 625  MGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQ 804
            MGL+M G E+G ++VVQAAV IG AIE EVRIHNFL+RT+K     N  GD  E++ KE+
Sbjct: 252  MGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRK-----NNAGDSQEEL-KEK 305

Query: 805  EILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQ 984
            ++LRKRV +LI+++++I+  K+VKS +  K WGR  QAKLGSRL+ELLIETAYVQPP+ Q
Sbjct: 306  QLLRKRVNSLIRRKRIIDALKVVKS-EGIKPWGRATQAKLGSRLLELLIETAYVQPPLTQ 364

Query: 985  LADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLI 1164
              DS PE  PAFRH FKT+T  PG +  RRYGV+ECD L+  GLD++A++M++PYVPML+
Sbjct: 365  SGDSIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMIIPYVPMLV 424

Query: 1165 PPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNK 1344
            PPK+WKGY  GG+LFLPSY+MRTHGS++QQDA++ +      +VFEALDTLG TKWRVN+
Sbjct: 425  PPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNR 484

Query: 1345 RLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQR 1524
            ++L VVE LWA GGN+AGLV+REDVPIPEK  SEDP E+Q+W+WSV KA K NRERH+ R
Sbjct: 485  KILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSVRKANKINRERHSLR 544

Query: 1525 CDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGK 1704
            CD+ELKLSVARKMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEG+PLGK
Sbjct: 545  CDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGK 604

Query: 1705 TGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQC 1884
            +GL WLKIHLANLYAGG+EKLS+D R+ FVE HL D++DSAE PI GKRWWL AEDPFQC
Sbjct: 605  SGLHWLKIHLANLYAGGVEKLSHDARLAFVETHLDDVMDSAENPIHGKRWWLKAEDPFQC 664

Query: 1885 LAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPAD 2064
            LAAC+ L++ALKS SP++V SHLPIHQDGSCNGLQHYAALGR            GEKPAD
Sbjct: 665  LAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPAD 724

Query: 2065 VYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGARE 2244
            VYSEI+ RV  I+K+D  KDP + P A LA+ILI QVDRKLVKQTVMTSVYGVTYVGARE
Sbjct: 725  VYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGARE 784

Query: 2245 QIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQP 2424
            QIKRRLEEKG ITD+R+LF+A+CY+AKVT+ ALGE+F+ AR+IM WLGDCAK+IAS+N P
Sbjct: 785  QIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHP 844

Query: 2425 VKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSH 2604
            V+W TPLGLPVVQPY +SERHLIRTSLQVLALQREG+ VDV++QRTAFPPNFVHSLDG+H
Sbjct: 845  VRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTH 904

Query: 2605 MMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            MMMTAVACR++GL+FAGVHDS+WTHA DVD MN+ILREKF+ELY
Sbjct: 905  MMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELY 948


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1193 bits (3086), Expect = 0.0
 Identities = 586/884 (66%), Positives = 706/884 (79%), Gaps = 7/884 (0%)
 Frame = +1

Query: 106  LSSNIQFSKSKLNQSVN---SHLGSLQFPTLSDPIDETPIENLQESITRIFVEDPPWISD 276
            +S+++ F  + +    N   S+ G+++  +L + ++     N      R+F++DPPWIS 
Sbjct: 74   ISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQDPPWISA 133

Query: 277  FL--STPKMNDREEKLGFQKMDTRKYNTLRTRQIKLETEAWXXXXXXXXXXXXXXXXXKL 450
                   KM D+  K+  + +D RK+++LR RQ+K ETEAW                  L
Sbjct: 134  LFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNL 193

Query: 451  APNLPYVKSLFLGWFGPFKEAIAEEQRLQKTKKQK--AAYAPHIDLLPADKMAVIVMHKM 624
            APNLPYVK +FLGWF P K+ I  EQ+LQK K +K  AAYAPHI+LLPADKMAVIVMHKM
Sbjct: 194  APNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKM 253

Query: 625  MGLLMVGQEEGSVRVVQAAVHIGEAIEHEVRIHNFLERTKKFQGLKNVEGDKHEDVSKEQ 804
            MGL+M G E+G ++VVQAAV IG AIE EVRIHNFL+RT+K     N  GD  E++ KE+
Sbjct: 254  MGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRK-----NNAGDSQEEL-KEK 307

Query: 805  EILRKRVKNLIKKQKLIEVQKLVKSADDRKSWGRDAQAKLGSRLVELLIETAYVQPPVNQ 984
            ++LRKRV +LI+++++I+  K+VKS +  K WGR  QAKLGSRL+ELLIE AYVQPP+ Q
Sbjct: 308  QLLRKRVNSLIRRKRIIDALKVVKS-EGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQ 366

Query: 985  LADSPPEIWPAFRHTFKTITNEPGRRAGRRYGVVECDQLVRKGLDRTARNMVVPYVPMLI 1164
              DS PE  PAFRH FKT+T  PG +  RRYGV+ECD L+  GLD++A++M++PYVPML+
Sbjct: 367  SGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLV 426

Query: 1165 PPKKWKGYANGGHLFLPSYVMRTHGSRQQQDAIKSVPRTQMQKVFEALDTLGRTKWRVNK 1344
            PPK+WKGY  GG+LFLPSY+MRTHGS++QQDA+K +      +VFEALDTLG TKWRVN+
Sbjct: 427  PPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNR 486

Query: 1345 RLLAVVETLWARGGNVAGLVDREDVPIPEKQHSEDPTEIQNWRWSVGKAKKCNRERHAQR 1524
             +L VVE LWA GGN+AGLV+REDVPIPEK  SEDP E+Q+W+WS  KA K NRERH+ R
Sbjct: 487  NILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLR 546

Query: 1525 CDIELKLSVARKMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGKPLGK 1704
            CD+ELKLSVARKMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEG+PLGK
Sbjct: 547  CDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGK 606

Query: 1705 TGLRWLKIHLANLYAGGIEKLSYDGRITFVENHLFDILDSAEKPIEGKRWWLNAEDPFQC 1884
            +GL WLKIHLANLYAGG+EKLS+D R+ FVENHL DI+DSAE PI GKRWWL AEDPFQC
Sbjct: 607  SGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQC 666

Query: 1885 LAACINLSEALKSTSPHTVTSHLPIHQDGSCNGLQHYAALGRXXXXXXXXXXXXGEKPAD 2064
            LAAC+ L++ALKS SP++V SHLPIHQDGSCNGLQHYAALGR            GEKPAD
Sbjct: 667  LAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPAD 726

Query: 2065 VYSEIAARVLNIIKRDCEKDPATYPAALLARILIDQVDRKLVKQTVMTSVYGVTYVGARE 2244
            VYSEI+ RV  I+K+D  KDP + P A LA+ILI QVDRKLVKQTVMTSVYGVTYVGARE
Sbjct: 727  VYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGARE 786

Query: 2245 QIKRRLEEKGRITDDRLLFSASCYAAKVTMTALGEMFQDARSIMGWLGDCAKVIASENQP 2424
            QIKRRLEEKG ITD+R+LF+A+CY+AKVT+ ALGE+F+ AR+IM WLGDCAK+IAS+N P
Sbjct: 787  QIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHP 846

Query: 2425 VKWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVDVKRQRTAFPPNFVHSLDGSH 2604
            V+W TPLGLPVVQPY +SERHLIRTSLQVLALQREG+ VDV++QRTAFPPNFVHSLDG+H
Sbjct: 847  VRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTH 906

Query: 2605 MMMTAVACRDSGLHFAGVHDSFWTHAGDVDKMNQILREKFIELY 2736
            MMMTAVACR++GL+FAGVHDS+WTHA DVD MN+ILREKF+ELY
Sbjct: 907  MMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELY 950