BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00013287
         (1264 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620042.1| 1a protein [Olive latent virus 2] gi|75568162|s...    73   2e-10
ref|YP_008888545.1| non-structural polyprotein precursor nsP1234...    70   1e-09
ref|YP_005351234.1| non structural polyprotein ns123 [Southern e...    70   1e-09
gb|AGE98317.1| non-structural polyprotein precursor P1234 [Venez...    69   3e-09
gb|ACM63154.1| p1 protein [Bacopa chlorosis virus]                     69   4e-09
ref|YP_054422.1| replicase [Humulus japonicus latent virus] gi|4...    69   4e-09
gb|AGE98249.1| non-structural polyprotein precursor P1234 [Venez...    69   6e-09
gb|AEJ36234.1| non structural polyprotein, partial [Trocara virus]     69   6e-09
gb|AGE98325.1| non-structural polyprotein precursor P1234 [Venez...    68   7e-09
gb|AGE98309.1| non-structural polyprotein precursor P1234 [Venez...    68   7e-09
gb|AGE98297.1| non-structural polyprotein precursor P1234 [Venez...    68   7e-09
gb|AGE98236.1| non-structural polyprotein precursor P1234 [Venez...    68   7e-09
gb|AAD43358.1| nonstructural polyprotein [Venezuelan equine ence...    68   7e-09
gb|AAD43355.1| nonstructural polyprotein [Venezuelan equine ence...    68   7e-09
gb|AAD43357.1| nonstructural polyprotein [Venezuelan equine ence...    68   7e-09
gb|AAD27802.1|AF100566_1 nonstructural polyprotein [Venezuelan e...    68   7e-09
ref|YP_164801.1| replicase [Fragaria chiloensis latent virus] gi...    68   7e-09
gb|AGE98346.1| putative non-structural polyprotein precursor P12...    68   1e-08
gb|AGE98343.1| putative non-structural polyprotein precursor P12...    68   1e-08
gb|AGE98341.1| putative non-structural polyprotein precursor P12...    68   1e-08

>ref|NP_620042.1| 1a protein [Olive latent virus 2] gi|75568162|sp|Q83943.1|1A_OLV2I
            RecName: Full=Replication protein 1a; Includes: RecName:
            Full=ATP-dependent helicase; Includes: RecName:
            Full=Methyltransferase gi|1149529|emb|CAA64072.1| 1a
            protein [Olive latent virus 2]
          Length = 908

 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
 Frame = +1

Query: 871  KSSVERVANDPYSCQVHCINGVAGSGKSYHIEHNAQV---GDVVLCETRESLEDVARGLQ 1041
            +S  + +A +  SC+   I+GVAG GK+Y I H A +    D++L   ++S ED+   L+
Sbjct: 611  ESLEKAIAMNVKSCKKTWIDGVAGCGKTYEIVHTADIFKKDDLILTANKKSQEDIFSQLK 670

Query: 1042 TLPGWRGHAYTVDAFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                      TVD++L+ +P  +AK L+IDEA  +H GK+ A M+         FGD +Q
Sbjct: 671  PGTDCAKRIRTVDSYLL-KPDVQAKRLFIDEAGLVHPGKLLAAMRFAECDDCLLFGDSEQ 729

Query: 1222 IPVLPFVPKFE 1254
            IP +  V   +
Sbjct: 730  IPFVNIVESLQ 740


>ref|YP_008888545.1| non-structural polyprotein precursor nsP1234 [Southern elephant seal
            virus]
          Length = 2442

 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
 Frame = +1

Query: 718  NGEFVDMVDKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVAN 897
            +GEFV  VDK     +A + G+ +  ++TNPP             Y   A +S   R A+
Sbjct: 677  SGEFVFDVDKRRCVPLADASGLVLVGELTNPP-------------YHEMAYESLKTRPAH 723

Query: 898  DPYSCQVHCINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTV 1077
              +  ++  + GV GSGKS  I+      D+V    +E+  ++ + ++   G    A TV
Sbjct: 724  T-HDVEIVGVYGVPGSGKSGIIKQLVTPNDLVSSGKKENCTEIMKDVKKARGLDIVARTV 782

Query: 1078 DAFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRP--TIVYCFGDDKQ 1221
            D+ L++    +  TL++DEAF  HAG + A++ I+RP   +V C GD KQ
Sbjct: 783  DSVLLNGVRRKIDTLYVDEAFACHAGTLLALISIVRPRRRVVLC-GDPKQ 831


>ref|YP_005351234.1| non structural polyprotein ns123 [Southern elephant seal virus]
            gi|339267589|gb|AEJ36232.1| non structural polyprotein
            [Southern elephant seal virus]
          Length = 1825

 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
 Frame = +1

Query: 718  NGEFVDMVDKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVAN 897
            +GEFV  VDK     +A + G+ +  ++TNPP             Y   A +S   R A+
Sbjct: 677  SGEFVFDVDKRRCVPLADASGLVLVGELTNPP-------------YHEMAYESLKTRPAH 723

Query: 898  DPYSCQVHCINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTV 1077
              +  ++  + GV GSGKS  I+      D+V    +E+  ++ + ++   G    A TV
Sbjct: 724  T-HDVEIVGVYGVPGSGKSGIIKQLVTPNDLVSSGKKENCTEIMKDVKKARGLDIVARTV 782

Query: 1078 DAFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRP--TIVYCFGDDKQ 1221
            D+ L++    +  TL++DEAF  HAG + A++ I+RP   +V C GD KQ
Sbjct: 783  DSVLLNGVRRKIDTLYVDEAFACHAGTLLALISIVRPRRRVVLC-GDPKQ 831


>gb|AGE98317.1| non-structural polyprotein precursor P1234 [Venezuelan equine
            encephalitis virus]
          Length = 2493

 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      ++ G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELATGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|ACM63154.1| p1 protein [Bacopa chlorosis virus]
          Length = 1054

 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
 Frame = +1

Query: 736  MVDKEVVSHMAVSDGVAVYDK-ITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSC 912
            M +   VS    SDG ++ D  + +    G  V  +  +  +G  +  ++E       + 
Sbjct: 745  MTEDGYVSLQWTSDGKSLSDTCVASLRRFGAIVVDDSCVFNSGQRMIPALESALKVKPNF 804

Query: 913  QVHCINGVAGSGKSYHIEHNAQVG---DVVLCETRESLEDVARGLQTLPGWRGHAYTVDA 1083
             V  ++GVAG GK+ H++  ++     D+VL   R S +++   L      +    TVD+
Sbjct: 805  NVTIVDGVAGCGKTTHLKRVSRFESNPDLVLTSNRSSADELKETLTCSDAMKYRIRTVDS 864

Query: 1084 FLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQIPVLPFVPKFEFQ 1260
            FLM +    A  L  DE F  HAG +YA   + +   V   GD +Q+P +  +P+F  Q
Sbjct: 865  FLMLKNWFSADRLLFDECFLTHAGCVYAAASLAQVKEVIALGDTEQVPFISRLPEFRMQ 923


>ref|YP_054422.1| replicase [Humulus japonicus latent virus] gi|46276446|gb|AAS86438.1|
            replicase [Humulus japonicus latent virus]
          Length = 1041

 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 5/168 (2%)
 Frame = +1

Query: 772  SDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVHCINGVAGSGK 951
            ++G  + +K     PD I V + + +  +G  I  ++++        +V  ++GVAG GK
Sbjct: 705  AEGFVLTEKCKRTLPDFILV-NKDCVFQSGRRIIPALKQALKKDARFKVKILDGVAGCGK 763

Query: 952  SYHIEHNAQVGDV----VLCETRESLEDVARGLQTLPGWRG-HAYTVDAFLMHRPVTEAK 1116
            SY I ++  + DV    VL   R +  ++   ++  P  +  +  T D++LM     +A+
Sbjct: 764  SYQIANSVDLSDVNRDLVLTSNRNASIELREVIKASPLMKAKYVRTCDSYLMASRPEKAR 823

Query: 1117 TLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQIPVLPFVPKFEFQ 1260
             L  DE F  HAG +YA   +     V  +GD +QIP +   P F+F+
Sbjct: 824  RLLFDECFMRHAGFVYAAATLAECEEVLAYGDTEQIPEISRNPAFKFR 871


>gb|AGE98249.1| non-structural polyprotein precursor P1234 [Venezuelan equine
            encephalitis virus]
          Length = 2493

 Score = 68.6 bits (166), Expect = 6e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLIGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AEJ36234.1| non structural polyprotein, partial [Trocara virus]
          Length = 1933

 Score = 68.6 bits (166), Expect = 6e-09
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
 Frame = +1

Query: 724  EFVDMVDKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDP 903
            E+V  VD         +  +A+   +TNPP           L Y G  I+ ++      P
Sbjct: 688  EYVYDVDARTCVKREEAGTLALTGDLTNPP--------YHELAYEGLKIRPTI------P 733

Query: 904  YSCQVHCINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDA 1083
            Y+ +   I GV GSGKS  I+      D+V    +E+  ++ + +    G    A TVD+
Sbjct: 734  YNIETIGIIGVPGSGKSAIIKAAVTSHDLVASGKKENCTEIEKDVLASRGITIRARTVDS 793

Query: 1084 FLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPT--IVYCFGDDKQ 1221
             L++      K L++DEAF  HAG + A++ I+RPT  +V C GD KQ
Sbjct: 794  ILLNGSPRRTKILYVDEAFACHAGTLLALIAIVRPTDKVVLC-GDPKQ 840


>gb|AGE98325.1| non-structural polyprotein precursor P1234 [Venezuelan equine
            encephalitis virus]
          Length = 2492

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AGE98309.1| non-structural polyprotein precursor P1234 [Venezuelan equine
            encephalitis virus]
          Length = 2485

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AGE98297.1| non-structural polyprotein precursor P1234 [Venezuelan equine
            encephalitis virus]
          Length = 2485

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKTVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            DK+      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DKKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCAEIIRDVKKIKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AGE98236.1| non-structural polyprotein precursor P1234 [Venezuelan equine
            encephalitis virus]
          Length = 2482

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLAGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AAD43358.1| nonstructural polyprotein [Venezuelan equine encephalitis virus]
          Length = 2485

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AAD43355.1| nonstructural polyprotein [Venezuelan equine encephalitis virus]
            gi|5442463|gb|AAD43356.1| nonstructural polyprotein
            [Venezuelan equine encephalitis virus]
          Length = 2485

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AAD43357.1| nonstructural polyprotein [Venezuelan equine encephalitis virus]
          Length = 2485

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AAD27802.1|AF100566_1 nonstructural polyprotein [Venezuelan equine encephalitis virus]
          Length = 2485

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
 Frame = +1

Query: 589  VAIASSKAIIDLATAAASGDAPVSRFRSTAQGHPGDI-------KLVKVE--NGEFVDMV 741
            + +   +A+ + AT   +    V+R+      H G +       K+VK    +GE++  +
Sbjct: 612  IPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKIVKPSEHDGEYLYDI 671

Query: 742  DKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVANDPYSCQVH 921
            D++      +  G+ +  ++ +PP             +   A +S   R A  PY     
Sbjct: 672  DRKQCVKKELVTGLGLTGELVDPP-------------FHEFAYESLRTRPAA-PYQVPTI 717

Query: 922  CINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVDAFLMHRP 1101
             + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD+ L++  
Sbjct: 718  GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777

Query: 1102 VTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
                +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 778  KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>ref|YP_164801.1| replicase [Fragaria chiloensis latent virus]
            gi|55976927|gb|AAV68306.1| replicase [Fragaria chiloensis
            latent virus]
          Length = 1083

 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
 Frame = +1

Query: 916  VHCINGVAGSGKSYHIEHNAQVG----DVVLCETRESLEDVARGLQTLPGWR----GHAY 1071
            V  ++GVAG GKS  I  NA +     D+VL   R S ED++     +PG R     +  
Sbjct: 783  VTIMDGVAGCGKSTSIVRNASLDPNCPDLVLSSNRSSAEDLSI---KIPGTRIVKSRYVR 839

Query: 1072 TVDAFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQIPVL 1233
            T D+FLM      AK ++ DE F  HAG IYA   + R + VY +GD +QIP +
Sbjct: 840  TCDSFLMTNSPPTAKKMFFDECFMQHAGCIYAAATLARCSEVYAYGDKEQIPFI 893


>gb|AGE98346.1| putative non-structural polyprotein precursor P1234, partial
            [Venezuelan equine encephalitis virus]
          Length = 1704

 Score = 67.8 bits (164), Expect = 1e-08
 Identities = 49/167 (29%), Positives = 82/167 (49%)
 Frame = +1

Query: 721  GEFVDMVDKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVAND 900
            GE++  +DK+      +  G+ +  ++ +PP             +   A +S   R A  
Sbjct: 665  GEYLYDIDKKQCVKKELVSGLGLTGELVDPP-------------FHEFAYESLRTRPAA- 710

Query: 901  PYSCQVHCINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVD 1080
            PY      + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD
Sbjct: 711  PYQVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVD 770

Query: 1081 AFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
            + L++      +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 771  SVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AGE98343.1| putative non-structural polyprotein precursor P1234, partial
            [Venezuelan equine encephalitis virus]
          Length = 1805

 Score = 67.8 bits (164), Expect = 1e-08
 Identities = 49/167 (29%), Positives = 82/167 (49%)
 Frame = +1

Query: 721  GEFVDMVDKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVAND 900
            GE++  +DK+      +  G+ +  ++ +PP             +   A +S   R A  
Sbjct: 665  GEYLYDIDKKQCVKKELVSGLGLTGELVDPP-------------FHEFAYESLRTRPAA- 710

Query: 901  PYSCQVHCINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVD 1080
            PY      + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD
Sbjct: 711  PYQVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVD 770

Query: 1081 AFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
            + L++      +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 771  SVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817


>gb|AGE98341.1| putative non-structural polyprotein precursor P1234, partial
            [Venezuelan equine encephalitis virus]
          Length = 1146

 Score = 67.8 bits (164), Expect = 1e-08
 Identities = 49/167 (29%), Positives = 82/167 (49%)
 Frame = +1

Query: 721  GEFVDMVDKEVVSHMAVSDGVAVYDKITNPPPDGIYVTSNELLVYTGGAIKSSVERVAND 900
            GE++  +DK+      +  G+ +  ++ +PP             +   A +S   R A  
Sbjct: 665  GEYLYDIDKKQCVKKELVSGLGLTGELVDPP-------------FHEFAYESLRTRPAA- 710

Query: 901  PYSCQVHCINGVAGSGKSYHIEHNAQVGDVVLCETRESLEDVARGLQTLPGWRGHAYTVD 1080
            PY      + GV GSGKS  I+      D+V+   +E+  ++ R ++ + G   +A TVD
Sbjct: 711  PYQVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVD 770

Query: 1081 AFLMHRPVTEAKTLWIDEAFRLHAGKIYAVMKILRPTIVYCFGDDKQ 1221
            + L++      +TL+IDEAF  HAG + A++ I+RP      GD KQ
Sbjct: 771  SVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQ 817