BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00012668
         (2583 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG66286.1| retrotransposon protein, putative, Ty3-gypsy subc...   139   6e-54
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi...   134   6e-54
gb|ABA97418.2| retrotransposon protein, putative, Ty3-gypsy subc...   139   8e-54
gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group...   131   1e-53
gb|ABA99634.1| retrotransposon protein, putative, Ty3-gypsy subc...   139   3e-53
emb|CAJ86189.1| H0306F03.2 [Oryza sativa Indica Group]                139   5e-53
emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa Japonica Group]        139   6e-53
gb|AAN09868.1| putative polyprotein [Oryza sativa Japonica Group]     135   1e-52
gb|AAP52585.2| retrotransposon protein, putative, Ty3-gypsy subc...   135   1e-52
gb|ABA94234.1| retrotransposon protein, putative, Ty3-gypsy subc...   137   1e-52
dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana...   132   1e-52
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-...   137   5e-52
gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor]               133   9e-52
gb|ABA99005.1| retrotransposon protein, putative, Ty3-gypsy subc...   138   9e-52
ref|XP_007022574.1| DNA/RNA polymerases superfamily protein [The...   137   2e-51
emb|CAB46045.1| retrotransposon like protein [Arabidopsis thalia...   125   2e-51
emb|CAE04051.2| OSJNBb0062B06.9 [Oryza sativa Japonica Group]         134   4e-50
emb|CAH68033.1| OSIGBa0139N19-OSIGBa0137L10.2 [Oryza sativa Indi...   134   4e-50
gb|AAO66562.1| putative gag-pol polyprotein [Oryza sativa Japoni...   123   3e-48
gb|ABF96926.1| retrotransposon protein, putative, Ty3-gypsy subc...   123   3e-48

>gb|ABG66286.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1759

 Score =  139 bits (350), Expect(2) = 6e-54
 Identities = 83/207 (40%), Positives = 116/207 (56%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1185 YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1244

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   +      + ++   +  L   +    +     SL  Q TL     K +      KE
Sbjct: 1245 TYCNVDQIRPDQDRLCRDLEKLRLTVVQSGVAA---SLTVQPTLESQIRKAQKDDEGIKE 1301

Query: 734  FELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKIY 555
              +  I++ K   ++S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+Y
Sbjct: 1302 L-IKRIQE-KKDTDFSIDDQGTVWYGPRICVPAKKELRDLILKEAHESAYSIHPGSTKMY 1359

Query: 554  RDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            +D+K  FWW GM RDVAEYV     CQ
Sbjct: 1360 QDIKAYFWWAGMKRDVAEYVALCDICQ 1386



 Score =  101 bits (252), Expect(2) = 6e-54
 Identities = 66/152 (43%), Positives = 83/152 (54%), Gaps = 17/152 (11%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   + E K +   MDF++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 1388 VKAEHQRPAGLLQPLPIPEWKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVP-M 1446

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 1447 KTTFDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 1505

Query: 132  QMDGQYESI----------MCFRFHGQWELTL 67
            Q DGQ E +              F G W+  L
Sbjct: 1506 QTDGQTERVNQILEDMLRACALDFEGTWDRCL 1537


>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1611

 Score =  134 bits (337), Expect(3) = 6e-54
 Identities = 83/207 (40%), Positives = 122/207 (58%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +LY  + ++ ++HKSLKYIF Q ELNLR RRWME + DY+  + YHPGKAN VAD LSR+
Sbjct: 1011 YLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRR 1070

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
                 V     +  ++++M TL      K +E +      Q+ L    S++R  +   ++
Sbjct: 1071 RSE--VEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLL---SRIR--LAQERD 1123

Query: 734  FELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKIY 555
             E+       N+ E+  S +G +   G++C+ N+   KE  L EAH+S+ +IHPGS K+Y
Sbjct: 1124 EEIKGWAQ-NNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMY 1182

Query: 554  RDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            RDLK  + W GM +DVA +V K  TCQ
Sbjct: 1183 RDLKRYYHWVGMKKDVARWVAKCPTCQ 1209



 Score = 92.8 bits (229), Expect(3) = 6e-54
 Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 10/131 (7%)
 Frame = -1

Query: 474  VVKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QG-HNVIWVIVDRLTKLAHFLE 298
            +VK EHQ P+G LQ+  + E K DH +MDF++GLP   +  HN +WV+VDRLTK AHF+ 
Sbjct: 1210 LVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMA 1269

Query: 297  YLE*TL*SKNH*ISCSEIVNFVILL---------DRDSRFTSQFWQSL*NASGTLLKFSI 145
              +         I   + ++ ++ L         DRD+RFTS+FW++   A GT +  S 
Sbjct: 1270 ISD----KDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLST 1325

Query: 144  ALHPQMDGQYE 112
            A HPQ D Q E
Sbjct: 1326 AYHPQTDEQSE 1336



 Score = 34.7 bits (78), Expect(3) = 6e-54
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = -2

Query: 119  NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTPH 3
            +M  +C LD+ G+   +  L +F +NN+ FQ+SIGM+P+
Sbjct: 1344 DMLRACVLDWGGNWEKYLRLVEFAYNNS-FQASIGMSPY 1381


>gb|ABA97418.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1807

 Score =  139 bits (351), Expect(2) = 8e-54
 Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 1/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1233 YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1292

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   +      +  +   +  L   +    +     SL  Q TL    S++R   ++ + 
Sbjct: 1293 AYCNVAQIRPDQDHLCGELEKLRLTVVQSGVPA---SLTVQPTLE---SRIREAQKDDEG 1346

Query: 734  F-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKI 558
              EL +    K    +S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+
Sbjct: 1347 IKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKM 1406

Query: 557  YRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            Y+D+K  FWW GM RDVAEYV     CQ
Sbjct: 1407 YQDIKAYFWWAGMKRDVAEYVALSDICQ 1434



 Score =  100 bits (250), Expect(2) = 8e-54
 Identities = 66/152 (43%), Positives = 83/152 (54%), Gaps = 17/152 (11%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   + E K +   MDF++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 1436 VKAEHQRPAGLLQPLPIPEWKWEEIGMDFITGLPRTPNGYDSIWVIVDRLTKSAHFVP-V 1494

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 1495 KTTYDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 1553

Query: 132  QMDGQYESI----------MCFRFHGQWELTL 67
            Q DGQ E +              F G W+  L
Sbjct: 1554 QTDGQTERVNQILEDMLRAYALDFEGTWDRCL 1585


>gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|78708018|gb|ABB46993.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1499

 Score =  131 bits (329), Expect(3) = 1e-53
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 11/211 (5%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     E+ ++HKSLKYIF Q +LNLR RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 914  YLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRK 973

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELM----FYSLVAQSTL-------PRG*S 768
            S             +  +   L   +E  NL ++      +L A+ TL        +   
Sbjct: 974  SH-------CNTLNVRGIPPELNQQMEALNLSIVGRGFLAALEAKPTLLDQIREAQKNDP 1026

Query: 767  KLRGMIRN*KEFELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSR 588
             + G+++N K+ +     + ++   W+           ++C+ ++ + K+  L EAH S 
Sbjct: 1027 DMHGLLKNMKQGKAAGFTEDEHGTLWNGK---------RVCVPDSKELKQLILQEAHESP 1077

Query: 587  KAIHPGSTKIYRDLKCQFWWKGMNRDVAEYV 495
             +IHPGSTK+Y DLK ++WW  M R++AE+V
Sbjct: 1078 YSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 1108



 Score =  100 bits (250), Expect(3) = 1e-53
 Identities = 61/127 (48%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   V E K D   MDF++GLP+T  G++ IWVIVDRLTK+A F+   
Sbjct: 1117 VKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVK 1176

Query: 291  E*TL*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQM 127
                 +K   +  + IV+       I+ DR S+FTS FW+ L    GT L FS A HPQ 
Sbjct: 1177 TTYGGNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQT 1236

Query: 126  DGQYESI 106
            DGQ E +
Sbjct: 1237 DGQTERL 1243



 Score = 28.5 bits (62), Expect(3) = 1e-53
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 119  NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTPH 3
            +M  +C LDF  +     P  +F + NN++Q+SI M P+
Sbjct: 1249 DMLRACVLDFGKTWDKSLPYAEFSY-NNSYQASIQMAPY 1286


>gb|ABA99634.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1851

 Score =  139 bits (351), Expect(2) = 3e-53
 Identities = 84/208 (40%), Positives = 116/208 (55%), Gaps = 1/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1277 YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1336

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   +      + ++   +  L   +    +     SL  Q TL    S++R   +  + 
Sbjct: 1337 AYCNVAQIRPDQDQLCRELEKLRLTVVQSGVPA---SLTVQPTLE---SQIREAQKEDEG 1390

Query: 734  F-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKI 558
              EL E    K    +S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+
Sbjct: 1391 IKELIERIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKM 1450

Query: 557  YRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            Y+D+K  FWW GM RDVAEYV     CQ
Sbjct: 1451 YQDIKAYFWWAGMKRDVAEYVALCDICQ 1478



 Score = 99.0 bits (245), Expect(2) = 3e-53
 Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EH RPAG LQ   + E K +   MDF++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 1480 VKAEHHRPAGLLQPLPIPEWKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVP-V 1538

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 1539 KTTYDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 1597

Query: 132  QMDGQYESI----------MCFRFHGQWELTL 67
            Q DGQ E +              F G W+  L
Sbjct: 1598 QTDGQTERVNQILEDMLRACALDFEGTWDRCL 1629


>emb|CAJ86189.1| H0306F03.2 [Oryza sativa Indica Group]
          Length = 1135

 Score =  139 bits (351), Expect(2) = 5e-53
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 1/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 561  YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 620

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   I      + ++   +  L   +    +     SL  Q TL    S++R   ++ + 
Sbjct: 621  AYCNIAQIRPDQDRLCRELEKLRLTVVQSGVPA---SLTVQPTLE---SQIREAQKDDEG 674

Query: 734  F-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKI 558
              EL +    K    +S+   G +    ++C+    + ++  L EAH+S  +IHPGSTK+
Sbjct: 675  IKELIKRIQEKKDTNFSIDNQGTVWCGPRICVPAKKELRDLILKEAHQSAYSIHPGSTKM 734

Query: 557  YRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            Y+D+K  FWW GM RDVAEYV     CQ
Sbjct: 735  YQDIKAYFWWAGMKRDVAEYVALCDICQ 762



 Score = 98.2 bits (243), Expect(2) = 5e-53
 Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   + E K +   MDF++GLPRT   ++ IWVIVDRLTK AHF+  +
Sbjct: 764  VKAEHQRPAGLLQPLPIPEWKWEEIGMDFITGLPRTPSRYDSIWVIVDRLTKSAHFVP-V 822

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 823  KTTFDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 881

Query: 132  QMDGQYESI----------MCFRFHGQWELTL 67
            Q DGQ E +              F G W+  L
Sbjct: 882  QTDGQTERVNQILEDMLRACALDFEGTWDRCL 913


>emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa Japonica Group]
          Length = 1831

 Score =  139 bits (351), Expect(2) = 6e-53
 Identities = 82/207 (39%), Positives = 115/207 (55%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1279 YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1338

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
                +      + ++   +  L   +    +     SL  Q TL     + +  +   KE
Sbjct: 1339 VYCNVAQIWPDQDRLCRELEKLRLTVVQSGVPA---SLTVQPTLESQIREAQKDVERIKE 1395

Query: 734  FELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKIY 555
              +  I++ K    +S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+Y
Sbjct: 1396 L-IKRIQE-KKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKMY 1453

Query: 554  RDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            +D+K  FWW GM RDVAEYV     CQ
Sbjct: 1454 QDIKAYFWWSGMKRDVAEYVALCDICQ 1480



 Score = 97.8 bits (242), Expect(2) = 6e-53
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 7/127 (5%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   + E K +   MDF++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 1482 VKAEHQRPAGLLQPLPIPEWKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVP-V 1540

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 1541 KTTYDGKKLAELYMTH-VVCRFGYPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 1599

Query: 132  QMDGQYE 112
            Q DG ++
Sbjct: 1600 QTDGTWD 1606


>gb|AAN09868.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1802

 Score =  135 bits (341), Expect(2) = 1e-52
 Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     E+ ++HKSLKYIF Q +LNLR RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1217 YLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRK 1276

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELM----FYSLVAQSTL-------PRG*S 768
            S             +  +   L   +E  NL ++      +L A+ TL        +   
Sbjct: 1277 SH-------CNTLNVRGIPPELSQQMEALNLSIVSRGFLAALEAKPTLLDQIREAQKNDP 1329

Query: 767  KLRGMIRN*KEFELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSR 588
             + G+++N K+ +     + ++   W+ +         ++C+ +N + K+  L EAH S 
Sbjct: 1330 DMHGLLKNMKQGKAAGFTEDEHGTLWNGN---------RVCVPDNRELKQLILQEAHESP 1380

Query: 587  KAIHPGSTKIYRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
             +IHPGSTK+Y DLK ++WW  M R++AE+V     CQ
Sbjct: 1381 YSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALRDVCQ 1418



 Score =  100 bits (249), Expect(2) = 1e-52
 Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   V E K D   MDF++GLP+T  G++ IWV+VDRLTK+A F+   
Sbjct: 1420 VKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVK 1479

Query: 291  E*TL*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQM 127
                 +K   +  + IV+       I+ DR S+FTS FW+ L    GT L FS A HPQ 
Sbjct: 1480 TTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQT 1539

Query: 126  DGQYESI 106
            DGQ E +
Sbjct: 1540 DGQTERL 1546


>gb|AAP52585.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1797

 Score =  135 bits (341), Expect(2) = 1e-52
 Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     E+ ++HKSLKYIF Q +LNLR RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1212 YLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRK 1271

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELM----FYSLVAQSTL-------PRG*S 768
            S             +  +   L   +E  NL ++      +L A+ TL        +   
Sbjct: 1272 SH-------CNTLNVRGIPPELSQQMEALNLSIVSRGFLAALEAKPTLLDQIREAQKNDP 1324

Query: 767  KLRGMIRN*KEFELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSR 588
             + G+++N K+ +     + ++   W+ +         ++C+ +N + K+  L EAH S 
Sbjct: 1325 DMHGLLKNMKQGKAAGFTEDEHGTLWNGN---------RVCVPDNRELKQLILQEAHESP 1375

Query: 587  KAIHPGSTKIYRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
             +IHPGSTK+Y DLK ++WW  M R++AE+V     CQ
Sbjct: 1376 YSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALRDVCQ 1413



 Score =  100 bits (249), Expect(2) = 1e-52
 Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   V E K D   MDF++GLP+T  G++ IWV+VDRLTK+A F+   
Sbjct: 1415 VKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVK 1474

Query: 291  E*TL*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQM 127
                 +K   +  + IV+       I+ DR S+FTS FW+ L    GT L FS A HPQ 
Sbjct: 1475 TTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQT 1534

Query: 126  DGQYESI 106
            DGQ E +
Sbjct: 1535 DGQTERL 1541


>gb|ABA94234.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1214

 Score =  137 bits (345), Expect(2) = 1e-52
 Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 1/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 661  YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 720

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   +      + ++   +  L   +    +     SL  Q TL    S++R   ++ + 
Sbjct: 721  AYCNVAQIRPDQDRLCRELEKLRLTVVQSGVPA---SLTVQPTLE---SQIREAQKDDEG 774

Query: 734  F-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKI 558
              EL +    K    +S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+
Sbjct: 775  IKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKM 834

Query: 557  YRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            Y+D+K  FWW GM RDV EYV     CQ
Sbjct: 835  YQDIKAYFWWAGMKRDVTEYVALCDICQ 862



 Score = 99.0 bits (245), Expect(2) = 1e-52
 Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   + E K +   MD ++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 864  VKAEHQRPAGLLQPLPIPEWKWEEIGMDLITGLPRTPSGYDSIWVIVDRLTKSAHFVA-V 922

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 923  KTTFDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 981

Query: 132  QMDGQYESI----------MCFRFHGQWELTL 67
            Q DGQ E +              F G W+  L
Sbjct: 982  QTDGQTERVNQILEDMLRACALDFEGTWDRCL 1013


>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
          Length = 1152

 Score =  132 bits (332), Expect(3) = 1e-52
 Identities = 87/240 (36%), Positives = 135/240 (56%), Gaps = 7/240 (2%)
 Frame = -2

Query: 1172 KNVPLNN-DIWTINIIEREWNTTRSKLHLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWM 996
            KN P ++ ++  +    ++W     + +LY  +  + ++HKSLK+ F Q+ LN+R RRW+
Sbjct: 543  KNYPTHDLELAAVVFALKQW-----RHYLYGVKARIFTDHKSLKFFFTQENLNMRQRRWL 597

Query: 995  EFLKDYDFPLHYHPGKANVVADVLSRKSQGLIVG*TLRR-WKMLDVMRTLIFVLEDKNLE 819
            EF+KDYD  + YHPGKANVVAD LSR+    I   TL+     LD ++  I V+E +   
Sbjct: 598  EFVKDYDLDIQYHPGKANVVADALSRRPVNAIT--TLQEVIHQLDSLQ--IQVVEREGEA 653

Query: 818  LMFYSLVAQSTLPRG*SKLRGMIRN*KE-----FELPEIEDGKNQYEWSLSADGGLR*LG 654
              F  L+A+       S+L   IR  ++      +L  +   K    + L  +G L    
Sbjct: 654  QCFAPLMAR-------SELLDDIRAKQDEDPVLVDLKRVAREKPTVGYQLDKNGHLWYGD 706

Query: 653  KLCILNNIQFKEYFLSEAHRSRKAIHPGSTKIYRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            +LC+ +    ++  + EAH+   A+HPGSTK+YRDLK ++WW GM  ++AE+V K  TCQ
Sbjct: 707  RLCVPDVDGLRQQVMDEAHKIAFAVHPGSTKMYRDLKERYWWLGMKLNIAEFVAKCDTCQ 766



 Score = 98.6 bits (244), Expect(3) = 1e-52
 Identities = 60/125 (48%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EH+RP G L+   V E K ++ +MDF++GLPRT  GH++IWVIVDRLTK AHFL   
Sbjct: 768  VKAEHRRPGGLLKPLEVPEWKWENITMDFITGLPRTKSGHDMIWVIVDRLTKSAHFLPCK 827

Query: 291  E*TL*SKNH*ISCSEIVN-----FVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQM 127
                  K   +    IV        I+ DRDSRF S FW+ L  A  T    S A HPQ 
Sbjct: 828  VDMPIKKFTQLYLDNIVRLHGVPLSIVSDRDSRFISHFWKGLQKAFETKTDLSTAFHPQT 887

Query: 126  DGQYE 112
            DGQ E
Sbjct: 888  DGQSE 892



 Score = 26.2 bits (56), Expect(3) = 1e-52
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 119  NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTP 6
            +M  +C L+  GS      + +F + NN++ +S+GM P
Sbjct: 900  DMLRACVLEVGGSWDDFLSVAEFAY-NNSYHASLGMPP 936


>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77548823|gb|ABA91620.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1761

 Score =  137 bits (345), Expect(2) = 5e-52
 Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 1/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q +LN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 1187 YLIGNRCEVYTDHKSLKYIFTQTKLNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1246

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   +      + ++   +  L   +    +     SL  Q TL    S++R   ++ + 
Sbjct: 1247 AYCNVAQIRPDQDRLCRELEKLRLTVVQSGVPA---SLTVQPTLE---SQIREAQKDDEG 1300

Query: 734  F-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKI 558
              EL +    K    +S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+
Sbjct: 1301 IKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKM 1360

Query: 557  YRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            Y+D+K  FWW GM RDVAEYV     CQ
Sbjct: 1361 YQDIKAYFWWTGMKRDVAEYVALCDICQ 1388



 Score = 97.1 bits (240), Expect(2) = 5e-52
 Identities = 63/150 (42%), Positives = 80/150 (53%), Gaps = 15/150 (10%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG LQ   + E K +   M F++GLPRT  G++ IWVIVDRLTK AHF+   
Sbjct: 1390 VKAEHQRPAGLLQPLPIPEWKWEEIGMYFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVK 1449

Query: 291  E*TL*SKNH*ISCSEIV-----NFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQM 127
                  K   +  + +V        I+ DR ++FTS+FW+ L  A GT L FS A HPQ 
Sbjct: 1450 TIFDGKKLAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQT 1509

Query: 126  DGQYESI----------MCFRFHGQWELTL 67
            DGQ E +              F G W+  L
Sbjct: 1510 DGQTERVNQILEDMLRACALDFEGTWDRCL 1539


>gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor]
          Length = 924

 Score =  133 bits (335), Expect(2) = 9e-52
 Identities = 79/208 (37%), Positives = 118/208 (56%), Gaps = 2/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L   + ++ ++HKSLKY F Q++LN+R RRW+E +KDY+  +HYHPGKANVVAD LSRK
Sbjct: 345  YLIGNKCDIYTDHKSLKYFFTQEDLNMRQRRWLELIKDYNLEIHYHPGKANVVADALSRK 404

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG-*SKLRGMIRN*K 738
            S             M  +   L   + D  LE++   L+++  +      ++R   R   
Sbjct: 405  SY-------CHSLSMEAIPPELCQEMGDLQLEIVPKGLLSELRIQYDLEDRIRRAQRGCP 457

Query: 737  EF-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTK 561
            E  E+ E  +G    E+ +   G      ++C+ ++   +E  LSEAH SR  IHPGSTK
Sbjct: 458  EIQEVHERMEGGKCPEFRVDERGTYWCKNRICVPSDEPLREEILSEAHDSRYCIHPGSTK 517

Query: 560  IYRDLKCQFWWKGMNRDVAEYVLKGLTC 477
            +Y DL+  FWWK M +D+A +V +  TC
Sbjct: 518  MYADLRKVFWWKDMRKDIAGHVARCDTC 545



 Score =  100 bits (248), Expect(2) = 9e-52
 Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK EHQRPAG L+   V E K +  SMDF+ GLPR+ +GH+ IWVIVDRLTK+AHF+   
Sbjct: 548  VKAEHQRPAGLLKPLDVPEWKWEGISMDFIVGLPRSPKGHDSIWVIVDRLTKVAHFIPVK 607

Query: 291  E*TL*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQM 127
                  +   +    I+        I+ DR  ++ S+FWQSL  A GT L +S A HPQ 
Sbjct: 608  TVYRTEQLADLYVDHILRLHGAPTSIISDRGPQWVSRFWQSLHKAIGTRLDYSTAYHPQT 667

Query: 126  DGQYESI----------MCFRFHGQWELTLS 64
            DGQ E +             ++   WE +LS
Sbjct: 668  DGQTERVNQVLEDMLRACVLKYGSDWEKSLS 698


>gb|ABA99005.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 923

 Score =  138 bits (347), Expect(2) = 9e-52
 Identities = 83/208 (39%), Positives = 117/208 (56%), Gaps = 1/208 (0%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 371  YLIGNRCEVYTDHKSLKYIFTQIELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 430

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTLPRG*SKLRGMIRN*KE 735
            +   +      + ++   +  L   +    +     SL  Q TL    S++R   ++ + 
Sbjct: 431  AYCNVAQIRPGQDRLCRELEKLRLTVVQSGVPA---SLTVQPTLE---SQIREAQKDDEG 484

Query: 734  F-ELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGSTKI 558
              EL +    K    +S+   G +    ++C+    + ++  L EAH S  +IHPGSTK+
Sbjct: 485  IKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLMLKEAHESAYSIHPGSTKM 544

Query: 557  YRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            Y+D+K  FWW GM RDVAEYV     CQ
Sbjct: 545  YQDIKAYFWWAGMKRDVAEYVALCDICQ 572



 Score = 95.5 bits (236), Expect(2) = 9e-52
 Identities = 59/127 (46%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
 Frame = -1

Query: 471 VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
           VK EHQRPAG LQ   + E K +   MDF++G PRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 574 VKAEHQRPAGLLQPLPIPEWKWEEIGMDFITGSPRTPSGYDSIWVIVDRLTKSAHFVP-V 632

Query: 291 E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
           + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 633 KTTFDRKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 691

Query: 132 QMDGQYE 112
           Q DG ++
Sbjct: 692 QTDGTWD 698


>ref|XP_007022574.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508722202|gb|EOY14099.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1502

 Score =  137 bits (344), Expect(3) = 2e-51
 Identities = 82/210 (39%), Positives = 121/210 (57%), Gaps = 9/210 (4%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +LY E  E+ ++HKSLKYIF Q++LNLR RRWME LKDYD  + YHPGKANVVAD LSRK
Sbjct: 990  YLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWMELLKDYDCTILYHPGKANVVADALSRK 1049

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFV-----LEDKNLELMFYSL--VAQSTLPRG*SKLRG 756
            S G +   ++ R  ++  + +L  +     + + N  L  + +  +    +    SK   
Sbjct: 1050 SMGSLAHISIGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSK--- 1106

Query: 755  MIRN*KEFELPEIED--GKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKA 582
                  EF +  +ED  G+    ++   DG LR   +L + +    +   L EAH +   
Sbjct: 1107 -----DEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYV 1161

Query: 581  IHPGSTKIYRDLKCQFWWKGMNRDVAEYVL 492
            +HPG+TK+Y+DLK  +WW+G+ RDVAE+ L
Sbjct: 1162 VHPGATKMYQDLKEVYWWEGLKRDVAEFPL 1191



 Score = 87.8 bits (216), Expect(3) = 2e-51
 Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
 Frame = -1

Query: 423  VVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYLE*TL*SKNH*ISCSEI 244
            V+E K +H +MDF++GLPRT  G++ IW++VDRLTK AHFL        ++   +   EI
Sbjct: 1193 VLEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEI 1252

Query: 243  VN-----FVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQMDGQYE 112
            V        I+ DR ++FTS+FW  L  A GT L FS A HPQ DGQ E
Sbjct: 1253 VRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSE 1301



 Score = 28.5 bits (62), Expect(3) = 2e-51
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 119  NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTP 6
            +M  +C +D       + PL +F +NN+ FQ+SI M P
Sbjct: 1309 DMLRACVIDLGVRWEQYLPLVEFAYNNS-FQTSIQMAP 1345


>emb|CAB46045.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268441|emb|CAB80961.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 687

 Score =  125 bits (315), Expect(3) = 2e-51
 Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 3/231 (1%)
 Frame = -2

Query: 1172 KNVPLNN-DIWTINIIEREWNTTRSKLHLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWM 996
            KN P N+ ++  +    + W +     +LY  + ++ ++HKSLKYIF Q ELNLR RRW+
Sbjct: 81   KNYPTNDLEMAAVVFALKIWRS-----YLYGAKVQIFTDHKSLKYIFTQPELNLRQRRWI 135

Query: 995  EFLKDYDFPLHYHPGKANVVADVLSRKSQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLEL 816
            + + DYD  + YHPGKAN V D LSR     +V     +  ++++M TL      K +E 
Sbjct: 136  KLVADYDLNIAYHPGKANQVVDALSRLR--TVVEAERNQVNLVNMMGTLHLNALSKEVEP 193

Query: 815  MFYSLVAQSTLPRG*SKLRGMIRN*KEFELPEIED--GKNQYEWSLSADGGLR*LGKLCI 642
            +      Q       + L   IR+ +E +  EI+     N+ E+  S +G +   G++C 
Sbjct: 194  LGLRAANQ-------ADLLSRIRSAQERD-EEIKGWAQNNKTEYQSSNNGTIVVNGRVCG 245

Query: 641  LNNIQFKEYFLSEAHRSRKAIHPGSTKIYRDLKCQFWWKGMNRDVAEYVLK 489
             N+   KE  L EAH+S+ +IHPGS K+YRDLK  + W GM +DVA +V K
Sbjct: 246  PNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAK 296



 Score = 92.8 bits (229), Expect(3) = 2e-51
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
 Frame = -1

Query: 474 VVKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QG-HNVIWVIVDRLTKLAHFLE 298
           V K EHQ P+G LQ+  + E K DH  MDF++GLP   +  HN +WV+VDRLTK AHF+ 
Sbjct: 294 VAKEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMA 353

Query: 297 YLE*TL*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
             +             EIV        I+ DRD+RFTS+FW+      GT +  S A HP
Sbjct: 354 ISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHP 413

Query: 132 QMDGQYE 112
           Q DGQ E
Sbjct: 414 QTDGQSE 420



 Score = 34.7 bits (78), Expect(3) = 2e-51
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = -2

Query: 119 NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTPH 3
           +M  +C LD+ G+   +  L +F +NN+ FQ+SIGM+P+
Sbjct: 428 DMLRACVLDWGGNWEKYLRLVEFAYNNS-FQASIGMSPY 465


>emb|CAE04051.2| OSJNBb0062B06.9 [Oryza sativa Japonica Group]
          Length = 1680

 Score =  134 bits (337), Expect(2) = 4e-50
 Identities = 83/210 (39%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYH GKANVVAD LSRK
Sbjct: 1244 YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHSGKANVVADALSRK 1303

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTL-PRG*SKLRGMIRN*K 738
            +   +     + W   D    L   LE   L ++   + A  T+ P   S++R   ++ +
Sbjct: 1304 TYCNVA----QTWPDQD---HLCRELEKLRLAVVQSGVPASLTVQPTLESQIREAQKDDE 1356

Query: 737  EFE--LPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGST 564
              +  +  I++ K   ++S+   G +    ++C+    + ++  L EAH S  +IHPGST
Sbjct: 1357 GIKGLIKRIQEKKGT-DFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGST 1415

Query: 563  KIYRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            K+Y+D+K  FWW GM RDV EYV     CQ
Sbjct: 1416 KMYQDIKAYFWWAGMKRDVTEYVALCDICQ 1445



 Score = 94.0 bits (232), Expect(2) = 4e-50
 Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK E+QRPAG  Q   + E K +   MD ++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 1447 VKAEYQRPAGLPQPLPIPEWKWEEIGMDLITGLPRTPSGYDSIWVIVDRLTKSAHFVP-V 1505

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 1506 KTTFDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 1564

Query: 132  QMDGQYESI 106
            Q DGQ E +
Sbjct: 1565 QTDGQIERV 1573


>emb|CAH68033.1| OSIGBa0139N19-OSIGBa0137L10.2 [Oryza sativa Indica Group]
          Length = 1680

 Score =  134 bits (337), Expect(2) = 4e-50
 Identities = 83/210 (39%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     EV ++HKSLKYIF Q ELN+R RRW+E +KDYD  +HYH GKANVVAD LSRK
Sbjct: 1244 YLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHSGKANVVADALSRK 1303

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTL-PRG*SKLRGMIRN*K 738
            +   +     + W   D    L   LE   L ++   + A  T+ P   S++R   ++ +
Sbjct: 1304 TYCNVA----QTWPDQD---HLCRELEKLRLAVVQSGVPASLTVQPTLESQIREAQKDDE 1356

Query: 737  EFE--LPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIHPGST 564
              +  +  I++ K   ++S+   G +    ++C+    + ++  L EAH S  +IHPGST
Sbjct: 1357 GIKGLIKRIQEKKGT-DFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGST 1415

Query: 563  KIYRDLKCQFWWKGMNRDVAEYVLKGLTCQ 474
            K+Y+D+K  FWW GM RDV EYV     CQ
Sbjct: 1416 KMYQDIKAYFWWAGMKRDVTEYVALCDICQ 1445



 Score = 94.0 bits (232), Expect(2) = 4e-50
 Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
 Frame = -1

Query: 471  VKTEHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYL 292
            VK E+QRPAG  Q   + E K +   MD ++GLPRT  G++ IWVIVDRLTK AHF+  +
Sbjct: 1447 VKAEYQRPAGLPQPLPIPEWKWEEIGMDLITGLPRTPSGYDSIWVIVDRLTKSAHFVP-V 1505

Query: 291  E*TL*SK-------NH*ISCSEIVNFVILLDRDSRFTSQFWQSL*NASGTLLKFSIALHP 133
            + T   K        H + C       I+ DR ++FTS+FW+ L  A GT L FS A HP
Sbjct: 1506 KTTFDGKKLAELYMTH-VVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHP 1564

Query: 132  QMDGQYESI 106
            Q DGQ E +
Sbjct: 1565 QTDGQIERV 1573


>gb|AAO66562.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1288

 Score =  123 bits (309), Expect(3) = 3e-48
 Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 7/196 (3%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     E+ ++HKSLKYIF Q +LNLR RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 577  YLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRK 636

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTL-------PRG*SKLRG 756
            S+   +G      ++   M  L   + D+       +L A+ TL        +    + G
Sbjct: 637  SRCNTLGVRGIPPELHQQMEALNLSIVDRG---FLATLEAKPTLLDQIHEAQKNDPDMHG 693

Query: 755  MIRN*KEFELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIH 576
            +++N K+ +     + ++   W+ +         ++C+ ++ + K+  L EAH S  +IH
Sbjct: 694  ILKNMKQGKAAGFTEDEHGTLWNGN---------RVCVPDDKELKQLILQEAHESPYSIH 744

Query: 575  PGSTKIYRDLKCQFWW 528
            PGSTK+Y DLK ++WW
Sbjct: 745  PGSTKMYLDLKGKYWW 760



 Score = 90.9 bits (224), Expect(3) = 3e-48
 Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
 Frame = -1

Query: 462  EHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYLE*T 283
            EHQRPAG LQ   V E K D   MDF++GLP+T  G++ IWV+VDR TK+A F+      
Sbjct: 762  EHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRQTKVARFIPVKTTY 821

Query: 282  L*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQMDGQ 118
              +K   +  + IV+       I+ DR S+FT  FW+ L    GT L FS A HPQ DGQ
Sbjct: 822  GGNKLAELYFARIVSLHGVPKKIVSDRGSQFTYHFWKKLQEELGTRLNFSTAYHPQTDGQ 881



 Score = 28.5 bits (62), Expect(3) = 3e-48
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 119  NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTPH 3
            +M  +C LDF  +     P  +F + NN++Q+SI M P+
Sbjct: 891  DMLRACVLDFGKTWDKSLPYAEFSY-NNSYQASIQMAPY 928


>gb|ABF96926.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1031

 Score =  123 bits (309), Expect(3) = 3e-48
 Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 7/196 (3%)
 Frame = -2

Query: 1094 HLYKEEFEV*SNHKSLKYIFIQKELNLR*RRWMEFLKDYDFPLHYHPGKANVVADVLSRK 915
            +L     E+ ++HKSLKYIF Q +LNLR RRW+E +KDYD  +HYHPGKANVVAD LSRK
Sbjct: 314  YLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRK 373

Query: 914  SQGLIVG*TLRRWKMLDVMRTLIFVLEDKNLELMFYSLVAQSTL-------PRG*SKLRG 756
            S+   +G      ++   M  L   + D+       +L A+ TL        +    + G
Sbjct: 374  SRCNTLGVRGIPPELHQQMEALNLSIVDRG---FLATLEAKPTLLDQIHEAQKNDPDMHG 430

Query: 755  MIRN*KEFELPEIEDGKNQYEWSLSADGGLR*LGKLCILNNIQFKEYFLSEAHRSRKAIH 576
            +++N K+ +     + ++   W+ +         ++C+ ++ + K+  L EAH S  +IH
Sbjct: 431  ILKNMKQGKAAGFTEDEHGTLWNGN---------RVCVPDDKELKQLILQEAHESPYSIH 481

Query: 575  PGSTKIYRDLKCQFWW 528
            PGSTK+Y DLK ++WW
Sbjct: 482  PGSTKMYLDLKGKYWW 497



 Score = 90.9 bits (224), Expect(3) = 3e-48
 Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
 Frame = -1

Query: 462 EHQRPAGKLQSWLVVE*K*DHASMDFMSGLPRT*QGHNVIWVIVDRLTKLAHFLEYLE*T 283
           EHQRPAG LQ   V E K D   MDF++GLP+T  G++ IWV+VDR TK+A F+      
Sbjct: 499 EHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRQTKVARFIPVKTTY 558

Query: 282 L*SKNH*ISCSEIVNF-----VILLDRDSRFTSQFWQSL*NASGTLLKFSIALHPQMDGQ 118
             +K   +  + IV+       I+ DR S+FT  FW+ L    GT L FS A HPQ DGQ
Sbjct: 559 GGNKLAELYFARIVSLHGVPKKIVSDRGSQFTYHFWKKLQEELGTRLNFSTAYHPQTDGQ 618



 Score = 28.5 bits (62), Expect(3) = 3e-48
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 119 NMRASCALDFTGSGS*HFPLTKFVHNNNNFQSSIGMTPH 3
           +M  +C LDF  +     P  +F + NN++Q+SI M P+
Sbjct: 628 DMLRACVLDFGKTWDKSLPYAEFSY-NNSYQASIQMAPY 665