BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00011855
         (1274 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   465   e-128
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   439   e-120
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   430   e-118
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   429   e-117
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   419   e-114
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   406   e-110
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...   403   e-110
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   395   e-107
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     395   e-107
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   395   e-107
ref|XP_007219009.1| hypothetical protein PRUPE_ppa004259mg [Prun...   394   e-107
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   393   e-107
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   392   e-106
ref|XP_007137569.1| hypothetical protein PHAVU_009G1376001g, par...   387   e-105
ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,...   384   e-104
ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...   384   e-104
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   383   e-104
ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplas...   382   e-103
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,...   382   e-103
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   382   e-103

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  465 bits (1197), Expect = e-128
 Identities = 248/381 (65%), Positives = 296/381 (77%), Gaps = 4/381 (1%)
 Frame = +2

Query: 143  MGVVTVPSSAS--QTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSD 316
            MGVVTV SSAS  +TP GL+A+FS H++PL+RP++LAF  DK KN AL+T HEPI LP +
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 317  TPKEHKI-LRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSE 493
            T K+HK  LR+++K SKRVKAV              Y+EAAAKLENIYKLS  TD+S++E
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELD-YNEAAAKLENIYKLSPATDVSEAE 119

Query: 494  DTDRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVV 670
            D +R++      +K+V  +D++ EKE+  NVVR H KK KR++L+             V 
Sbjct: 120  DLERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVA 179

Query: 671  SSDGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKAL 850
            S   K ++  E  +++ L+REYS STDLVSLDWKKMKIP VLP SEHAWLFKLMQPMK L
Sbjct: 180  SIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGL 239

Query: 851  LQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKY 1030
            L+VK+NL+K++GREPTD ELAE   MS  +VRR +EVGQAARNKLI+HNLRLVLFVINKY
Sbjct: 240  LEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKY 299

Query: 1031 FQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRV 1210
            FQEFA+G +FQDLCQAGVKGLITAIDRFEPKR  RLSTYGLFWIRH+IMRSMTLSSFTRV
Sbjct: 300  FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRV 359

Query: 1211 SFGLESVRVEIQRAKLELTFE 1273
            SFGLESVRVEIQRAKLEL F+
Sbjct: 360  SFGLESVRVEIQRAKLELLFK 380


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  439 bits (1129), Expect = e-120
 Identities = 235/380 (61%), Positives = 290/380 (76%), Gaps = 3/380 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSAS++PLGLS+RFST   PLKRPVI++F  DKTKNT LI   E ISL  +T 
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 323  KEH-KILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
            KE+ K  R+ +K S+RV AV              YSEAAAKLE+IYK S  T  S++E  
Sbjct: 61   KENEKRSRRVSKRSERVHAVAIEASPSTLELD--YSEAAAKLESIYKRSLETASSNTEVQ 118

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSHKK-AKRVNLDXXXXXXXXXXXXMVVSS 676
            D L+     T+K++ E DE+ +KE+  NVV++ +K +KR+NLD            MV SS
Sbjct: 119  DHLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASS 178

Query: 677  DGKE-NNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALL 853
            + ++   + E   +++L+REYSG+TDL SLDWKKMKIP VLPSSEH WLFKLMQPMKA+L
Sbjct: 179  ERRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAIL 238

Query: 854  QVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYF 1033
            QVKENL+ ++GREPTD E+AE T M   ++R+++EVG+AARNKLI+HNLRLVLFV+NKYF
Sbjct: 239  QVKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYF 298

Query: 1034 QEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVS 1213
            Q+FA+GSRFQDLCQAGVKGLITAIDRFEP R+ RLSTYGLFWIRH+I+RSMT SSFT+V 
Sbjct: 299  QDFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVP 358

Query: 1214 FGLESVRVEIQRAKLELTFE 1273
            FGLES+RVEIQ+AKLEL FE
Sbjct: 359  FGLESIRVEIQKAKLELLFE 378


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 1 [Solanum
            lycopersicum]
          Length = 516

 Score =  430 bits (1105), Expect = e-118
 Identities = 229/380 (60%), Positives = 287/380 (75%), Gaps = 3/380 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSAS++PLGLS+RFS    PLKRPVI++F  D TKNT L++  E IS P +T 
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 323  KEH-KILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
            KE+ K  R+ +K ++RV AV              YSEAAAKLE+IYK S  T   ++E  
Sbjct: 61   KENEKRSRRVSKRTERVHAVTIEAPPSTLELD--YSEAAAKLESIYKRSLETASPNTEVK 118

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVVSS 676
            D L+     T+K++ ESDE+ +KE+  NVV++  KK+KR+NLD            M+ SS
Sbjct: 119  DHLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASS 178

Query: 677  DGKE-NNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALL 853
            + ++ N + E   +++L+REYSG+TDL SLDWKKMKIP VLPSSEH WLFKLMQPMKA+L
Sbjct: 179  ERRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAIL 238

Query: 854  QVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYF 1033
            QVKENL+ ++GREPTD E+AE T M   ++R+++E G+AARNKLI+HNLRLVLFV+NKYF
Sbjct: 239  QVKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYF 298

Query: 1034 QEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVS 1213
            Q+FA+ SRFQDLCQAGVKGLITAIDRFEP R+ RLSTYGLFWIRH+I+R MT SSFT+V 
Sbjct: 299  QDFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVP 358

Query: 1214 FGLESVRVEIQRAKLELTFE 1273
            FGLES+RVEIQ+AKLEL FE
Sbjct: 359  FGLESIRVEIQKAKLELLFE 378


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  429 bits (1104), Expect = e-117
 Identities = 230/378 (60%), Positives = 281/378 (74%), Gaps = 1/378 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVV+V SSAS+TPLGLS +FST+ S  KRP+I+AF  +K+ NT+L+  HE I LP +T 
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 323  KEHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDTD 502
            K  K L KS KSS R+KAV              Y+EAAAKLENIYKLS  TD SD ED  
Sbjct: 61   KGKKRLGKSKKSSNRLKAVRTEVSPCTLLVD--YNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 503  RLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVVSSD 679
             ++      K+K+ E D++ E      +VR+  KKAKR++L+            +V S+ 
Sbjct: 119  GVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAG 178

Query: 680  GKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQV 859
             +++   E   ++ L+REYS STDLVSLDWKKMKIP VL SSEH WLFKLMQPMKALLQV
Sbjct: 179  KRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 860  KENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQE 1039
            KE+L++ +G EPTD ELA+ T M + +VR+QI VG+AARNKLI+HNLRLVLFVI KYFQ+
Sbjct: 239  KEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 1040 FASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSFG 1219
            FA+G++FQD CQAGVKGLITAIDRFEPKRR RLSTYGLFWIRH+I+RSMTLSSFTRVSFG
Sbjct: 299  FANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 1220 LESVRVEIQRAKLELTFE 1273
            LES+R EIQ+AKLEL F+
Sbjct: 359  LESIRSEIQKAKLELWFQ 376


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  419 bits (1077), Expect = e-114
 Identities = 226/378 (59%), Positives = 272/378 (71%), Gaps = 1/378 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVV+V SSA++TPLGLS +FST R   +RP+ +AF  DK+ NTAL+T  E I LP +T 
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 323  KEHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDTD 502
            KEH   R   K   ++                 Y+EAAAKLENIYKLS  T  SD E+ +
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 503  RLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVVSSD 679
              +      +K+ +ESDE+        VVR+   + KR++LD             VVS  
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 680  GKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQV 859
             K+++  E   ++RL+R+YS STDLVSLDW+KMKIP VLPS EH WLFKLMQPMKALLQ 
Sbjct: 181  RKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQA 240

Query: 860  KENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQE 1039
            KENL+K++GR+PT+ ELAE T MS  +VR+ +EVGQAARNKLI+HNLRLVLF INKYFQ+
Sbjct: 241  KENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQD 300

Query: 1040 FASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSFG 1219
            FA+G RFQDLCQAGVKGLITAIDRFEP+RR RLSTY LFWIRH+I+RSMTLSSFTRVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 1220 LESVRVEIQRAKLELTFE 1273
            LESVRVEIQRAKLEL FE
Sbjct: 361  LESVRVEIQRAKLELLFE 378


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  406 bits (1043), Expect = e-110
 Identities = 227/381 (59%), Positives = 278/381 (72%), Gaps = 5/381 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSAS+TPLGLS + +  RS L++P+I+AF TD+   TAL+   E I LP +T 
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 323  KEH-KILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDI-SDSED 496
            K+H K L K+ K +K VK+               Y+EAAAKLEN+YK S  T+  SD ED
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVD-YNEAAAKLENLYKRSPETEANSDVED 119

Query: 497  TDRLMXXXXXTKKKVEESD-EQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVV 670
             D LM      +KK  ESD ++ E    + VVR+  KKAKR++L+            ++ 
Sbjct: 120  VDGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVIS 179

Query: 671  SSDGKENNNV-EGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKA 847
            S   K  +   E   +E L+REYS STDLVSLDWKKMKIP VL SSEHAWLFKLMQPMK 
Sbjct: 180  SIVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKG 239

Query: 848  LLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINK 1027
            LL+VKENL+K++GREPT+ ELAE T MS+ +V++ +EVG+AAR+KLI+HNLRLVLFV+NK
Sbjct: 240  LLEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNK 299

Query: 1028 YFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTR 1207
            YFQ+FA+G +FQDLCQAGVKGLITAIDRFEPKR  RLSTYGLFWIRH+I+RSMTLSSFTR
Sbjct: 300  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTR 359

Query: 1208 VSFGLESVRVEIQRAKLELTF 1270
            VSFGLESVR EIQ+AKL + F
Sbjct: 360  VSFGLESVRAEIQKAKLGMLF 380


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 2 [Solanum
            lycopersicum]
          Length = 487

 Score =  403 bits (1036), Expect = e-110
 Identities = 221/379 (58%), Positives = 271/379 (71%), Gaps = 2/379 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSAS++PLGLS+RFS    PLKRPVI++F  D TKNT L++  E IS P +T 
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 323  KEH-KILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
            KE+ K  R+ +K ++RV AV              YSEAAAKLE+IYK S  T   ++E  
Sbjct: 61   KENEKRSRRVSKRTERVHAVTIEAPPSTLELD--YSEAAAKLESIYKRSLETASPNTEVK 118

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVVSS 676
            D L+     T+K++ ESDE+ +KE+  NVV++  KK+KR+NLD                 
Sbjct: 119  DHLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIA------------- 165

Query: 677  DGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQ 856
                           LL+   G+TDL SLDWKKMKIP VLPSSEH WLFKLMQPMKA+LQ
Sbjct: 166  ---------------LLKNKEGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 210

Query: 857  VKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQ 1036
            VKENL+ ++GREPTD E+AE T M   ++R+++E G+AARNKLI+HNLRLVLFV+NKYFQ
Sbjct: 211  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 270

Query: 1037 EFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSF 1216
            +FA+ SRFQDLCQAGVKGLITAIDRFEP R+ RLSTYGLFWIRH+I+R MT SSFT+V F
Sbjct: 271  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPF 330

Query: 1217 GLESVRVEIQRAKLELTFE 1273
            GLES+RVEIQ+AKLEL FE
Sbjct: 331  GLESIRVEIQKAKLELLFE 349


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  395 bits (1016), Expect = e-107
 Identities = 226/380 (59%), Positives = 274/380 (72%), Gaps = 6/380 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARF-STHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDT 319
            MGVVTV SS S+TPLGLS    S+ RS L++P+I+AF TDK+   AL+   E + LP +T
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 320  PKE-HKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSED 496
             K+  K L K+ K  K VKA               Y+EAAAKLEN+YK S  T+ SD E+
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELD-YNEAAAKLENLYKRSPETEASDVEN 119

Query: 497  TDRLMXXXXXTK-KKVEESDEQVEKEIFHN-VVRS-HKKAKRVNLDXXXXXXXXXXXXMV 667
             D LM      + KK+ E D++VEK    + VVRS  KKAKR++LD            + 
Sbjct: 120  VDGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVA 179

Query: 668  VSSDGK-ENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMK 844
             S   K ++   E   +E L+REYS STDLVSLDWKKM+IP VL SSEH WLFKLMQPMK
Sbjct: 180  ASVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMK 239

Query: 845  ALLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVIN 1024
             LL+VKE L+K++GREP   ELAE T M++ +V+R +EVG+AARNKLI+HNLRLVLFVIN
Sbjct: 240  GLLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVIN 299

Query: 1025 KYFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFT 1204
            KYFQ+FA+G +FQDLCQAGVKGLITAIDRFEP+RR RLSTYGLFWIRH+I+RSMTLSSFT
Sbjct: 300  KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFT 359

Query: 1205 RVSFGLESVRVEIQRAKLEL 1264
            RVSFGLESVR EIQ+AKLE+
Sbjct: 360  RVSFGLESVRAEIQKAKLEM 379


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  395 bits (1014), Expect = e-107
 Identities = 228/384 (59%), Positives = 278/384 (72%), Gaps = 7/384 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSP-LKRPVILAFNTDKTKNTALITNHEPISLPSDT 319
            MGVVTV SSAS+TPLGLS +FS++RS  LK+P+I+AF  DK+  T L+   + I LP +T
Sbjct: 1    MGVVTVSSSASRTPLGLSLKFSSNRSSVLKKPLIVAFKGDKSNKTVLVAPQDQIILPVET 60

Query: 320  PKEHKI-LRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSED 496
             KE K  + K+ KSS RVKAV              Y+EAAAKLENI+KLSS    +D ED
Sbjct: 61   RKEVKSRVGKAKKSSNRVKAVATDEASTSTMEVD-YNEAAAKLENIFKLSS----ADVED 115

Query: 497  TDRLMXXXXXTKKKV-EESDEQVEKE--IFHNVVRSHKK-AKRVNLDXXXXXXXXXXXXM 664
               L       + KV  ESDE+  K+      VVR+ KK AKR++L             +
Sbjct: 116  AVGLTSRGRRRRSKVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENV 175

Query: 665  VVSSDGKENNNV-EGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPM 841
             V    K   ++ E   +E+L+REYS STDLVSLDWKKMKIP VLPSSEH WLFKLMQP+
Sbjct: 176  AVVLVRKRRESLNEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPL 235

Query: 842  KALLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVI 1021
            K L QV E+L+K +GREPT+ ELAE T +S+ +V+R +E G+AARNKLI+HNLRLVLFV+
Sbjct: 236  KQLFQVGEDLQKTLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVM 295

Query: 1022 NKYFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSF 1201
            NKYFQ+F +G +FQDLCQAGV+GLITAIDRFEPKRR RLSTYGLFWIRH+I+RSMT+SSF
Sbjct: 296  NKYFQDFTNGPKFQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSF 355

Query: 1202 TRVSFGLESVRVEIQRAKLELTFE 1273
            TRVSFGLESVR EIQ+AK+ELTFE
Sbjct: 356  TRVSFGLESVRAEIQKAKIELTFE 379


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
            gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 512

 Score =  395 bits (1014), Expect = e-107
 Identities = 221/379 (58%), Positives = 275/379 (72%), Gaps = 2/379 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGV+TV +SA++TPL L+ R  +H+   KRP+ILAF  +K+  T L++  E I LP +T 
Sbjct: 1    MGVITVSTSAARTPLRLNTRLISHQQVHKRPIILAFKGNKSNKTTLVSPQEKIPLPLETA 60

Query: 323  KEH-KILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
            K+H K + K+++S KRV+AV              Y+EAAAKLENIYKLS  +D  + ED 
Sbjct: 61   KKHQKRVGKTSESLKRVRAVSTVETSPCTLDVD-YNEAAAKLENIYKLSPVSDTCNVEDI 119

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRS-HKKAKRVNLDXXXXXXXXXXXXMVVSS 676
            D  +      +KKV E  +    +   NVVR+ +KKAKR++LD            ++  +
Sbjct: 120  DSKIERVLRRRKKVSEERDDGNCD---NVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQT 176

Query: 677  DGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQ 856
              K N      +++ L+R+YS STDLVS+DWKKMKIP VLPSSEHAWLFKLMQPMKALLQ
Sbjct: 177  QKKRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQ 236

Query: 857  VKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQ 1036
             KE+LK E+ +E T  ELA+ T MS+ +VR+ IEVG+AARNKLI+HNLRLVLFVINKYFQ
Sbjct: 237  AKEDLK-EVDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQ 295

Query: 1037 EFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSF 1216
            +FASG RFQDLCQAGVKGLITAIDRFEPKRR +LSTY LFWIRHSI+RS+TLSSFTRV F
Sbjct: 296  DFASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPF 355

Query: 1217 GLESVRVEIQRAKLELTFE 1273
            GLE VRV+IQR KL+LTFE
Sbjct: 356  GLERVRVDIQRTKLKLTFE 374


>ref|XP_007219009.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415471|gb|EMJ20208.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 390

 Score =  394 bits (1011), Expect = e-107
 Identities = 221/377 (58%), Positives = 273/377 (72%), Gaps = 5/377 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSAS+TPLGLS + +  RS L++P+I+AF TD+   TAL+   E I LP +T 
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 323  KEH-KILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDI-SDSED 496
            K+H K L K+ K +K VK+               Y+EAAAKLEN+YK S  T+  SD ED
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVD-YNEAAAKLENLYKRSPETEANSDVED 119

Query: 497  TDRLMXXXXXTKKKVEESD-EQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVV 670
             D LM      +KK  ESD ++ E    + VVR+  KKAKR++L+            ++ 
Sbjct: 120  VDGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVIS 179

Query: 671  SSDGKENNNV-EGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKA 847
            S   K  +   E   +E L+REYS STDLVSLDWKKMKIP VL SSEHAWLFKLMQPMK 
Sbjct: 180  SIVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKG 239

Query: 848  LLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINK 1027
            LL+VKENL+K++GREPT+ ELAE T MS+ +V++ +EVG+AAR+KLI+HNLRLVLFV+NK
Sbjct: 240  LLEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNK 299

Query: 1028 YFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTR 1207
            YFQ+FA+G +FQDLCQAGVKGLITAIDRFEPKR  RLSTYGLFWIRH+I+RSMTLSSFTR
Sbjct: 300  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTR 359

Query: 1208 VSFGLESVRVEIQRAKL 1258
            VSFGLESVR + ++  L
Sbjct: 360  VSFGLESVRRKSKKLSL 376


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  393 bits (1010), Expect = e-107
 Identities = 214/378 (56%), Positives = 269/378 (71%), Gaps = 1/378 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVT  SSA++TPLGLS +FST+RS +KR +++AF  DK  +  L+   E   LP +T 
Sbjct: 1    MGVVTASSSAARTPLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETS 60

Query: 323  KEHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDTD 502
            K  K   +  K+++ V +               Y+EAAAKLENIYKLS  TD SD  D +
Sbjct: 61   KGKK---RRGKTNREVSS---------GTLEVDYNEAAAKLENIYKLSPATDTSDV-DIN 107

Query: 503  RLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVVSSD 679
             L+      K+K  E DE+ E      +VR+  KK KR++LD            +V    
Sbjct: 108  GLIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIR 167

Query: 680  GKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQV 859
             K+++  +   +E L+R YS ST+LVSLDW+KMKIP VLPS+EHAWLFKLMQPMK LL V
Sbjct: 168  KKKDSKDDNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPV 227

Query: 860  KENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQE 1039
            K +L+K +GR+PTD ELAE T M++ KVR+Q+EVG+AARNKLI+HNLRLV+FV+NKYFQ+
Sbjct: 228  KADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQD 287

Query: 1040 FASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSFG 1219
            FA+G RFQDLCQAGVKGLITAIDRFEP+RR +LSTY LFWIRH+I+RSMTLSSFT+VSFG
Sbjct: 288  FANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFG 347

Query: 1220 LESVRVEIQRAKLELTFE 1273
            LESVR EIQ+AKLEL  E
Sbjct: 348  LESVRTEIQKAKLELLIE 365


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  392 bits (1006), Expect = e-106
 Identities = 219/379 (57%), Positives = 271/379 (71%), Gaps = 2/379 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVT+ SS +++P+GLS    +HRS  KRP+I+AF  DK+ N AL +  E I LP +TP
Sbjct: 1    MGVVTISSSPARSPIGLST--ISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETP 58

Query: 323  KEHKILRK-STKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
            K H+  R+ S K  +RVK V              Y+EAAAKLENIYKLS     S+ +  
Sbjct: 59   KRHQKRRENSRKRLERVKGVFSDEASPCTLDVD-YNEAAAKLENIYKLSPAVTTSEVKYA 117

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVVSS 676
            D ++      +K++ E +++ +      VVR+  K+ KR++LD             VV+ 
Sbjct: 118  DGVVKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEK-VVTK 176

Query: 677  DGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQ 856
              K ++  E   +E+L+REYS STDLVSLDWKKMKIP VL S+EH WLFKLMQPMK  +Q
Sbjct: 177  TRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQ 236

Query: 857  VKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQ 1036
            VKE L+K++GREPTD ELAE T MS  +V++ +EVG+AARNKLI+HNLRLVLFVI KYFQ
Sbjct: 237  VKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 296

Query: 1037 EFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSF 1216
            +FA+G RFQDLCQAGVKGLITAIDRFEPKRR RLSTYGLFWIRH+I+RSMT+SSFTRV F
Sbjct: 297  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 356

Query: 1217 GLESVRVEIQRAKLELTFE 1273
            GLESVR EIQRAKLEL FE
Sbjct: 357  GLESVRGEIQRAKLELLFE 375


>ref|XP_007137569.1| hypothetical protein PHAVU_009G1376001g, partial [Phaseolus vulgaris]
            gi|561010656|gb|ESW09563.1| hypothetical protein
            PHAVU_009G1376001g, partial [Phaseolus vulgaris]
          Length = 398

 Score =  387 bits (994), Expect = e-105
 Identities = 210/377 (55%), Positives = 259/377 (68%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSA++TPLGL+ +FS +R  LKRP+I+AF  DK  ++AL+   E I +P +T 
Sbjct: 1    MGVVTVSSSAARTPLGLNTKFSCNR--LKRPLIIAFKGDKHDDSALVATQEKIPVPVETS 58

Query: 323  KEHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDTD 502
            K  K      K   + + V              Y+EAAA LENIYKLS  +D +++E  D
Sbjct: 59   KTQKKKMGKAKKLPKRERVAFVEENSQTSLDVDYNEAAAMLENIYKLSPASDTANAECMD 118

Query: 503  RLMXXXXXTKKKVEESDEQVEKEIFHNVVRSHKKAKRVNLDXXXXXXXXXXXXMVVSSDG 682
              +      +KK+ +  E+ +      V   +KKAKR+ LD             VV +  
Sbjct: 119  GKIKRVSRRRKKIVDDCEEKDVNDDRVVRNQNKKAKRLGLDQRISLKSNTDGDEVVPTQK 178

Query: 683  KENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQVK 862
            K N N     +E L+REYS STD V +DW++MKIP VL SSEHAWLFKLMQP+K +LQVK
Sbjct: 179  KRNANNSVEKIEELIREYSASTDFVGMDWRRMKIPPVLSSSEHAWLFKLMQPVKTILQVK 238

Query: 863  ENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQEF 1042
            E+L+KE+ REP D ELA  T MS+  V++ +EVGQAARNKLI+HNLRLVLFVINKYF +F
Sbjct: 239  EDLQKELAREPADGELANATNMSIAHVKKALEVGQAARNKLIKHNLRLVLFVINKYFTDF 298

Query: 1043 ASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSFGL 1222
            ASGSRFQDLCQ+GVKGL+TAIDRFEP RR RLSTY LFWIRH+I RSMTLSSFTRV FGL
Sbjct: 299  ASGSRFQDLCQSGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAITRSMTLSSFTRVPFGL 358

Query: 1223 ESVRVEIQRAKLELTFE 1273
            ESVR EIQ+AK +LTFE
Sbjct: 359  ESVRGEIQKAKTKLTFE 375


>ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Glycine max]
          Length = 509

 Score =  384 bits (986), Expect = e-104
 Identities = 219/383 (57%), Positives = 266/383 (69%), Gaps = 6/383 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV  SAS+TPLG + +FSTHR  LKRP+I+AF  DK  ++AL+   E I +P +T 
Sbjct: 1    MGVVTVSGSASRTPLGFNTKFSTHR--LKRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 323  K--EHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSED 496
            K  + K + KS K  KR  +               Y+EAAA LENIYKLS  +   ++E 
Sbjct: 59   KKTQKKRIGKSNKLPKRESS--------PSSMDVDYNEAAAMLENIYKLSPASHTGNAEC 110

Query: 497  TD-RLMXXXXXTKKKVEESDEQVEKEIFHNVVR---SHKKAKRVNLDXXXXXXXXXXXXM 664
             D ++       KK V+ES+E+  K     VVR    +KKAKR+ LD             
Sbjct: 111  IDDKIKRVSRRGKKVVDESEEKELKG--DRVVRRQNKNKKAKRLTLDQRISLKNNKRGDE 168

Query: 665  VVSSDGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMK 844
            V+ +  K N       +E L+REYS S D +S+DWK+M+IP VL SSEHAWLFKLMQPMK
Sbjct: 169  VIPTRKKRNFRNRIEKIEELIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMK 228

Query: 845  ALLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVIN 1024
            ALLQVKE+L+KE+ REP D ELA+ T MS+ +V++ I+VGQAARNKLI+HNLRLVLFVIN
Sbjct: 229  ALLQVKEDLQKELAREPADGELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLFVIN 288

Query: 1025 KYFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFT 1204
            KYF +FASG RFQDLCQAGVKGLITAIDRFEP RR RLSTY LFWIRH+I+RSMTLSSF 
Sbjct: 289  KYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFI 348

Query: 1205 RVSFGLESVRVEIQRAKLELTFE 1273
            RV FGLESVR EIQ+AK ELTF+
Sbjct: 349  RVPFGLESVRAEIQKAKTELTFK 371


>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
            gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
            rpoD [Medicago truncatula]
          Length = 514

 Score =  384 bits (986), Expect = e-104
 Identities = 215/379 (56%), Positives = 264/379 (69%), Gaps = 2/379 (0%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSA++TPLGL+A+FSTH   LKRP+ +AF  DK  +TAL+   E I       
Sbjct: 1    MGVVTVSSSAARTPLGLNAKFSTHHPVLKRPLTVAFKGDKQNDTALVATQEKIPTQVKPA 60

Query: 323  KEHKI-LRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
            K HK  + K+ K  K+ +AV              Y+EAAA LENIYKLS  TDI D++  
Sbjct: 61   KTHKKRIAKTNKLPKKPRAVCTEETFPSSLDVD-YNEAAAILENIYKLSPTTDICDADYI 119

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSHK-KAKRVNLDXXXXXXXXXXXXMVVSS 676
            +R +       KK+   D   E      VVR+ K KAKR+NLD             V+ +
Sbjct: 120  ERKIKRVSRRGKKI--GDVSKEDSNSDRVVRNQKTKAKRMNLDERIALKTSENSEDVIPT 177

Query: 677  DGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKALLQ 856
              K N       ++ LLREYS   DLVSLDWKKMKIP VLPSSEHA+LFKLMQPMKALLQ
Sbjct: 178  RKKRNPRSRVEKIDELLREYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQ 237

Query: 857  VKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKYFQ 1036
            VK++L+KE+ REPT+ E+A+ T M   +V++ IEVG+AARNKLI+HNLRLVLFVIN+YF 
Sbjct: 238  VKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRAARNKLIKHNLRLVLFVINRYFS 297

Query: 1037 EFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRVSF 1216
            +FA+  RFQDLCQAGVKGLIT+IDRFEP RR RLSTY LFWIRH+I+RSMTL+SF+RV F
Sbjct: 298  DFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLASFSRVPF 357

Query: 1217 GLESVRVEIQRAKLELTFE 1273
            GLESVR EI+RAK+EL+F+
Sbjct: 358  GLESVRAEIRRAKIELSFQ 376


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  383 bits (984), Expect = e-104
 Identities = 217/384 (56%), Positives = 270/384 (70%), Gaps = 7/384 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV S+A++TP  L  +FS H S LKRP I+AF  DK  NT L++ HE ++LP ++ 
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 323  KEHKILRKST-KSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
               K    +T K  KRVKAV              Y+EAAAKLENI+KLS  T+ SD E  
Sbjct: 61   NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLD-YNEAAAKLENIFKLSPMTEDSDKECK 119

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSH-KKAKRVNLDXXXXXXXXXXXXMVV-- 670
            D          K+ ++  ++        +VR+  K+ KR++LD             V   
Sbjct: 120  D-------GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALL 172

Query: 671  --SSDGK-ENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPM 841
                D K E + ++  +++RL+R+YS STDLVSLDWKKMKIP VLPSSEH  LFKL+QPM
Sbjct: 173  RKQKDTKNEADEIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPM 232

Query: 842  KALLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVI 1021
            KAL++V+E L+K +GREPT+ ELA  T M++ +VRRQ+EVG+AARNKLI+HNLRLVLFVI
Sbjct: 233  KALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVI 292

Query: 1022 NKYFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSF 1201
            NKYF++FASG +FQDLCQAGVKGLITAIDRFEPKR+ RLSTY LFWIRH+I+RSMTLSSF
Sbjct: 293  NKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSF 352

Query: 1202 TRVSFGLESVRVEIQRAKLELTFE 1273
            TRVSFGL+SVRVEIQRAKLEL  E
Sbjct: 353  TRVSFGLDSVRVEIQRAKLELLCE 376


>ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Glycine max] gi|382365034|dbj|BAM05478.1| sigma-like
            factor 5B [Glycine max]
          Length = 507

 Score =  382 bits (981), Expect = e-103
 Identities = 218/382 (57%), Positives = 271/382 (70%), Gaps = 5/382 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSA++TPLGL+ +F  +R  LKRP+I+AF  DK  ++AL+   E I +P +T 
Sbjct: 1    MGVVTVSSSAARTPLGLNTKFCNNR--LKRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 323  K--EHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSED 496
            K  + K + K+ K  KR  +               Y+EAAA LEN+YKLS  +D ++  D
Sbjct: 59   KKTQKKRIGKTNKLPKRESS--------PSSMDVDYNEAAAMLENLYKLSPASDNAECID 110

Query: 497  TDRLMXXXXXTKKKVEESDEQVEKEIFHNVVRS---HKKAKRVNLDXXXXXXXXXXXXMV 667
              ++       KK V+ES+E+  K  +  VVR+   +KK KR+NLD             V
Sbjct: 111  -GKIKRVSRRGKKVVDESEEKELKGDW--VVRNQNKNKKPKRLNLDQRISLKNNKSGDEV 167

Query: 668  VSSDGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKA 847
            + +  K N   +   +E L+REYS STD VS+DWK+M+IP VL SSEHAWLFKLMQPMKA
Sbjct: 168  IPTRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKA 227

Query: 848  LLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINK 1027
            LLQVKE+L++E+ REP D ELA+ T MS+ +VR+ I+VGQAARNKLI+HNLRLVLFVINK
Sbjct: 228  LLQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINK 287

Query: 1028 YFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTR 1207
            YF +FASG RFQDLCQAGVKGLITAIDRFEP RR RLSTY LFWIRH+I+RSMTLS+FTR
Sbjct: 288  YFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTR 347

Query: 1208 VSFGLESVRVEIQRAKLELTFE 1273
            V FGLESVR EIQ+AK ELTFE
Sbjct: 348  VPFGLESVRAEIQKAKTELTFE 369


>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 507

 Score =  382 bits (981), Expect = e-103
 Identities = 218/382 (57%), Positives = 271/382 (70%), Gaps = 5/382 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV SSA++TPLGL+ +F  +R  LKRP+I+AF  DK  ++AL+   E I +P +T 
Sbjct: 1    MGVVTVSSSAARTPLGLNTKFCNNR--LKRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 323  K--EHKILRKSTKSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSED 496
            K  + K + K+ K  KR  +               Y+EAAA LEN+YKLS  +D ++  D
Sbjct: 59   KKTQKKRIGKTNKLPKRESS--------PSSMDVDYNEAAAMLENLYKLSPASDNAECID 110

Query: 497  TDRLMXXXXXTKKKVEESDEQVEKEIFHNVVRS---HKKAKRVNLDXXXXXXXXXXXXMV 667
              ++       KK V+ES+E+  K  +  VVR+   +KK KR+NLD             V
Sbjct: 111  -GKIKRVSRRGKKVVDESEEKELKGDW--VVRNQNKNKKPKRLNLDQRISLKNNKSGDEV 167

Query: 668  VSSDGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKA 847
            + +  K N   +   +E L+REYS STD VS+DWK+M+IP VL SSEHAWLFKLMQPMKA
Sbjct: 168  IPTRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKA 227

Query: 848  LLQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINK 1027
            LLQVKE+L++E+ REP D ELA+ T MS+ +VR+ I+VGQAARNKLI+HNLRLVLFVINK
Sbjct: 228  LLQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINK 287

Query: 1028 YFQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTR 1207
            YF +FASG RFQDLCQAGVKGLITAIDRFEP RR RLSTY LFWIRH+I+RSMTLS+FTR
Sbjct: 288  YFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTR 347

Query: 1208 VSFGLESVRVEIQRAKLELTFE 1273
            V FGLESVR EIQ+AK ELTFE
Sbjct: 348  VPFGLESVRAEIQKAKTELTFE 369


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  382 bits (980), Expect = e-103
 Identities = 216/381 (56%), Positives = 266/381 (69%), Gaps = 4/381 (1%)
 Frame = +2

Query: 143  MGVVTVPSSASQTPLGLSARFSTHRSPLKRPVILAFNTDKTKNTALITNHEPISLPSDTP 322
            MGVVTV S+A++TP  L  +FS H S LKRP I+AF  DK  NT L++ HE ++LP ++ 
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 323  KEHKILRKST-KSSKRVKAVXXXXXXXXXXXXXXYSEAAAKLENIYKLSSPTDISDSEDT 499
               K    +T K  KRVKAV              Y+EAAAKLENI+KLS  T+ SD E  
Sbjct: 61   NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLD-YNEAAAKLENIFKLSPMTEDSDKECK 119

Query: 500  DRLMXXXXXTKKKVEESDEQVEKEIFHNVVRSHKKA---KRVNLDXXXXXXXXXXXXMVV 670
            D         +K+ ++S  +    I  N  +  K+    KR+ L              V 
Sbjct: 120  D---GRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGKAVP 176

Query: 671  SSDGKENNNVEGGDVERLLREYSGSTDLVSLDWKKMKIPHVLPSSEHAWLFKLMQPMKAL 850
            S   ++    E  +++RL+R+YS STDLVSLDWKKMKIP VLPSSEH  LFKL+QPMKAL
Sbjct: 177  SLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKAL 236

Query: 851  LQVKENLKKEMGREPTDTELAETTKMSLPKVRRQIEVGQAARNKLIRHNLRLVLFVINKY 1030
            ++V+E L+K +GREPT+ ELA  T M++ +VRRQ+EVG+AARNKLI+HNLRLVLFVINKY
Sbjct: 237  VEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKY 296

Query: 1031 FQEFASGSRFQDLCQAGVKGLITAIDRFEPKRRSRLSTYGLFWIRHSIMRSMTLSSFTRV 1210
            F++FASG +FQDLCQAGVKGLITAIDRFEPKR+ RLSTY LFWIRH+I+RSMTLSSFTRV
Sbjct: 297  FEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRV 356

Query: 1211 SFGLESVRVEIQRAKLELTFE 1273
            SFGL+SVRVEIQRAKLEL  E
Sbjct: 357  SFGLDSVRVEIQRAKLELLCE 377