BLASTX nr result
ID: Akebia25_contig00009547
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia25_contig00009547 (2934 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 261 e-121 emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 251 e-111 gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 226 e-107 gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 193 e-107 ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 193 e-106 gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 252 e-102 gb|AAD17351.1| contains similarity to retrovirus-related polypro... 276 e-101 gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 252 e-101 gb|AAM94350.1| gag-pol polyprotein [Zea mays] 215 e-101 gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 214 e-101 gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 206 1e-99 gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 184 3e-99 gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 182 4e-99 gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 206 7e-99 gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 183 2e-98 dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 201 2e-98 ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 268 2e-98 gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 183 6e-98 ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 256 1e-97 gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 182 1e-97 >gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] Length = 1887 Score = 205 bits (522), Expect(4) = e-121 Identities = 96/119 (80%), Positives = 108/119 (90%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1504 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 1563 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+TLLR +IKKN+KTWEDCLPHVEFAYN +HSA+KFSPF+IVY FN TPL+L PLP+ Sbjct: 1564 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPL 1622 Score = 143 bits (361), Expect(4) = e-121 Identities = 64/104 (61%), Positives = 83/104 (79%) Frame = -1 Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFL 784 D + +DALS RYVLLS+LDAKL GFE IK LYA + DF + Y+ C+K G Y+RHDGFL Sbjct: 1311 DNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFL 1370 Query: 783 FRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 F +N+LC+PN ++RE +RE+HGGGLMGHFGV+KT+ V Q+HF+ Sbjct: 1371 FYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFH 1414 Score = 134 bits (338), Expect(4) = e-121 Identities = 62/85 (72%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 MKR ++RIC RC TC+QAK++ PHGLYTPLPIPS PW DISMDFV+GLPR R G+D IF Sbjct: 1418 MKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIF 1477 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA H+A Sbjct: 1478 VVVDRFSKMAHFIPCHKTDDAIHIA 1502 Score = 24.6 bits (52), Expect(4) = e-121 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -1 Query: 42 LSECVNLDGKRKAE 1 LSE V+LDGK+KAE Sbjct: 1622 LSERVSLDGKKKAE 1635 Score = 261 bits (667), Expect = 1e-66 Identities = 145/302 (48%), Positives = 198/302 (65%), Gaps = 2/302 (0%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132 +MK++M KRF+ SHYY++L+ +L+ LVQG+ +VE YYK+M+ M+RA+I+ D EA M+RF Sbjct: 510 QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569 Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPF 1312 + GLN++I D +E+ HYVE+EELLHKAI EKQ+K P KD + F Sbjct: 570 MGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKP--SYHKDERSGF 627 Query: 1313 KP--KEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGD 1486 + K K K+ K + + + ++R IK F+CQG H ASE NKR+M++ G+ Sbjct: 628 QKDYKPFIKPKVEDQDQKGKGKA-VMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGE 686 Query: 1487 IESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHV 1666 IES E S ED + P G+LLVT +ALS+ K D ++EQRE++FH C V Sbjct: 687 IESEDEQLEESSSTED-----YEAPSKGELLVTMKALSVIAKTD-EQEQRENLFHSSCMV 740 Query: 1667 KDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSI 1846 DKVC LIID SCTNVAS +VEKL LK+ KHP+ YKLQ LN+ GE+ V++QV+VP SI Sbjct: 741 NDKVCSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSI 800 Query: 1847 GK 1852 GK Sbjct: 801 GK 802 >emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] Length = 1173 Score = 192 bits (488), Expect(3) = e-111 Identities = 96/130 (73%), Positives = 106/130 (81%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF++IVRLHG+PR+IVSDRD KFLS F K LW KLGTKLLFSTT HPQ DGQ EVVNRT Sbjct: 905 LFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRT 964 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV* 35 L+TLLR II+KN+K WEDCLP EFAYNR VHS T FSPFEIVY FN LTPL+L PLPV Sbjct: 965 LSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVN 1024 Query: 34 VCESRWKKKS 5 S +KK+ Sbjct: 1025 EMTSLDEKKN 1034 Score = 132 bits (332), Expect(3) = e-111 Identities = 64/102 (62%), Positives = 76/102 (74%) Frame = -1 Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFRENK 769 DALS RY L+STL+AKL GFE +KELYA + DF Y C+K G ++R DG+LFREN+ Sbjct: 717 DALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENR 776 Query: 768 LCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 LCVPN +MRE LVRE+H GGLMGHFGV KTL V EH + K Sbjct: 777 LCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPK 818 Score = 129 bits (325), Expect(3) = e-111 Identities = 61/85 (71%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 MKR ++R C RCIT R AKS+V PHGLYT L +PS PW+DISMDFVLGL R+R+GRD IF Sbjct: 819 MKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIF 878 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA+H+A Sbjct: 879 VVVDRFSKMTHFISCHKTDDATHIA 903 Score = 251 bits (642), Expect = 1e-63 Identities = 133/265 (50%), Positives = 173/265 (65%), Gaps = 4/265 (1%) Frame = +2 Query: 1046 NVEYYYKKMKITMIRANIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVE 1225 NV+ Y+K+M+I MIRAN+E D+E TM RF+ GLN++IA+VVEL HYVE+E ++H AIKVE Sbjct: 143 NVDDYHKEMEIAMIRANVEEDRETTMARFLNGLNRDIANVVELQHYVELENMVHMAIKVE 202 Query: 1226 KQIKXXXXXXXXXXNNP--WRPNW-KDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSR 1396 +Q+K + WRPN KD + FK K + + ++ + ++ Sbjct: 203 RQLKRKGTLSFQNPGSSASWRPNGRKDEGVVFKSKTKPPKRRDEAPNVNKGKNESQTRNH 262 Query: 1397 QIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEMSP-LEDCSDVEVKEPVHGD 1573 IKCF G HIAS+ PNKR M+ +G++E+ S D++ P LED D V+ PV G+ Sbjct: 263 DIKCFHYLGVGHIASQCPNKRTMIAHVDGEVETESEEDDDQMPSLEDSCDDNVEYPVEGE 322 Query: 1574 LLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLK 1753 LV RRALS Q K D E+QRE+IFH RCH+ +KVC +IID SC NVAST LVEKLNL Sbjct: 323 SLVARRALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVASTTLVEKLNLP 382 Query: 1754 LQKHPKLYKLQLLNDCGEVKVNKQV 1828 KHP+ YKLQ LNDCGEVK K V Sbjct: 383 TLKHPRPYKLQWLNDCGEVKEYKDV 407 >gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1713 Score = 193 bits (491), Expect(3) = e-107 Identities = 91/119 (76%), Positives = 102/119 (85%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+ Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 1434 Score = 133 bits (335), Expect(3) = e-107 Identities = 59/85 (69%), Positives = 72/85 (84%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1230 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 1289 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDASH+A Sbjct: 1290 VVVDRFSKMAHFIPCHKSDDASHIA 1314 Score = 112 bits (279), Expect(3) = e-107 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781 I +DALS + VLL+ L+ K+ G E IKELY+ +LDF E Y C Y HDGFLF Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 1183 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K Sbjct: 1184 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 1229 Score = 226 bits (576), Expect = 5e-56 Identities = 133/350 (38%), Positives = 193/350 (55%), Gaps = 24/350 (6%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132 EMK M RF+ HY +DL+ KLQ L QGS++V+ YYK+M+ MIRAN+ D+E ++ RF Sbjct: 213 EMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARF 272 Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXX--------NNPWRPN 1288 ++GL++ I +VE Y + EL+H+A K E+Q++ + + Sbjct: 273 MSGLHRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSR 332 Query: 1289 WKDNKIPFKPKEDA--------KSKLSISIPKDRPET--------NPLIKSRQIKCFRCQ 1420 N+ F S ++ P +R KS I+CF+C Sbjct: 333 GSGNRGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCG 392 Query: 1421 GFKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALS 1600 G H+A E PN R +VV G+ ES S + E S E+ + ++ E G LV + LS Sbjct: 393 GRGHVARECPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDICEFESGAALVVTQILS 452 Query: 1601 IQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYK 1780 +Q +D + QR ++F R V+DKV +IID SC N+AS +VEKL LKL KHP Y Sbjct: 453 VQ-MSDAENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYH 511 Query: 1781 LQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930 +Q LN+ G +K+ ++V+VPF IG+Y+D + CDVAPM H+LLGRPW D Sbjct: 512 VQWLNNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRPWQYD 561 >gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza sativa Japonica Group] Length = 681 Score = 193 bits (491), Expect(3) = e-107 Identities = 91/119 (76%), Positives = 102/119 (85%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+ Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 402 Score = 133 bits (335), Expect(3) = e-107 Identities = 59/85 (69%), Positives = 72/85 (84%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDASH+A Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282 Score = 112 bits (279), Expect(3) = e-107 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781 I +DALS + VLL+ L+ K+ G E IKELY+ +LDF E Y C Y HDGFLF Sbjct: 92 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197 >ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa Japonica Group] Length = 681 Score = 193 bits (490), Expect(3) = e-106 Identities = 91/119 (76%), Positives = 101/119 (84%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L P++L PLP+ Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPL 402 Score = 133 bits (335), Expect(3) = e-106 Identities = 59/85 (69%), Positives = 72/85 (84%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDASH+A Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282 Score = 110 bits (275), Expect(3) = e-106 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781 I +DALS + VLL+ L+ K+ G E IKELY +LDF E Y C Y HDGFLF Sbjct: 92 IVADALSRKNVLLNQLEVKVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197 >gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum] Length = 1588 Score = 171 bits (434), Expect(3) = e-102 Identities = 83/118 (70%), Positives = 97/118 (82%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383 Score = 126 bits (317), Expect(3) = e-102 Identities = 61/102 (59%), Positives = 74/102 (72%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778 + +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+ Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134 Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176 Score = 124 bits (311), Expect(3) = e-102 Identities = 54/86 (62%), Positives = 70/86 (81%) Frame = -2 Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477 SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSI 1238 Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399 FVVVDRFS M FI KT+DASHVA Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264 Score = 252 bits (644), Expect = 6e-64 Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 11/339 (3%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132 EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ RF Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249 Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288 + GLN EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN Sbjct: 250 LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 303 Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459 W ++ K P KP++D K K+ P+++ S I+C +C G H+ E P++R Sbjct: 304 WSTQEGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 361 Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639 +++ NG+ ES S E + +++ P G + V RR ++I DE QRE Sbjct: 362 NILLRENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 420 Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819 ++FH RC +K K +IID SC NV S+ LV+KL + K Y+LQ LNDCGEV+VN Sbjct: 421 NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVN 480 Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1936 KQ + F++G+Y DE++CDV PM A H+LLGRPW D D Sbjct: 481 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519 >gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1| putative polyprotein [Arabidopsis thaliana] Length = 1138 Score = 209 bits (532), Expect(3) = e-101 Identities = 98/119 (82%), Positives = 109/119 (91%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 879 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+TLLR +IKKN+KTWEDCLPHVEFAYN VHSATKFSPF+IVY FN +TPL+L PLP+ Sbjct: 939 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPL 997 Score = 129 bits (323), Expect(3) = e-101 Identities = 59/85 (69%), Positives = 68/85 (80%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 MKR ++R+C RC TC+QAK++ PHGL TPLPIP PW DISMDFV+GLPR R G+D IF Sbjct: 793 MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIF 852 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA H+A Sbjct: 853 VVVDRFSKMAHFIPCHKTDDAMHIA 877 Score = 84.0 bits (206), Expect(3) = e-101 Identities = 33/50 (66%), Positives = 44/50 (88%) Frame = -1 Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 RH+GFLF +N+LC+PN ++RE +RE+HGGGLMGHFGV+KTL V Q+HF+ Sbjct: 740 RHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFH 789 Score = 276 bits (705), Expect = 5e-71 Identities = 142/327 (43%), Positives = 211/327 (64%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129 +++K++M +RF+ SHY+++L+ +L+ LVQG+ VE Y+K+M+ M+RA+++ + EATM+R Sbjct: 130 NQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSR 189 Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309 F+ GLN++I D E+ HY +EEL HKA+ EKQIK + P ++ K Sbjct: 190 FMGGLNRDILDRFEVIHYENLEELFHKAVMFEKQIKRRSAKPSYNSSKP--SYQREEKSG 247 Query: 1310 FKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDI 1489 F+ + K + + + + ++R +KCF+C G H ASE NKR+M++ +G++ Sbjct: 248 FQKEYKPFVKPKVEEISSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEV 307 Query: 1490 ESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVK 1669 ES E SDVE E G+LLVT R LS+ K + ++ QRE++FH RC +K Sbjct: 308 ESEDEKPEE-------SDVE--EAPKGELLVTMRVLSVLNKAE-EQAQRENLFHTRCLIK 357 Query: 1670 DKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIG 1849 KVC LIID SCTNVAS +V+KL L+ HPK YKLQ LN+ GE+ V +QV+VP +IG Sbjct: 358 GKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAVTRQVQVPLAIG 417 Query: 1850 KYVDEVICDVAPMHAGHILLGRPWVRD 1930 KY DE++CD+ P+ A H+LLGRPW D Sbjct: 418 KYEDEILCDILPLEASHVLLGRPWQSD 444 >gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum] Length = 1588 Score = 171 bits (434), Expect(3) = e-101 Identities = 83/118 (70%), Positives = 97/118 (82%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383 Score = 126 bits (317), Expect(3) = e-101 Identities = 61/102 (59%), Positives = 74/102 (72%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778 + +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+ Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134 Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176 Score = 123 bits (308), Expect(3) = e-101 Identities = 54/86 (62%), Positives = 70/86 (81%) Frame = -2 Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477 SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSI 1238 Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399 FVVVDRFS M FI KT+DASHVA Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264 Score = 252 bits (644), Expect = 6e-64 Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 11/339 (3%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132 EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ RF Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249 Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288 + GLN EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN Sbjct: 250 LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 303 Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459 W ++ K P KP++D K K+ P+++ S I+C +C G H+ E P++R Sbjct: 304 WSTQEGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 361 Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639 +++ NG+ ES S E + +++ P G + V RR ++I DE QRE Sbjct: 362 NILLRENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 420 Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819 ++FH RC +K K +IID SC NV S+ LV+KL + K Y+LQ LNDCGEV+VN Sbjct: 421 NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVN 480 Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1936 KQ + F++G+Y DE++CDV PM A H+LLGRPW D D Sbjct: 481 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519 >gb|AAM94350.1| gag-pol polyprotein [Zea mays] Length = 1618 Score = 188 bits (478), Expect(3) = e-101 Identities = 88/118 (74%), Positives = 101/118 (85%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRDAKFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1316 LFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1375 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WEDCLPH+EFAYNR +HS TK PF+IVY P++L PLP Sbjct: 1376 LSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1433 Score = 130 bits (327), Expect(3) = e-101 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + R+ RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR R GRD +F Sbjct: 1230 MRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVF 1289 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA+H+A Sbjct: 1290 VVVDRFSKMAHFIPCHKTDDATHIA 1314 Score = 102 bits (253), Expect(3) = e-101 Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTN-GTYFRHDGFLF 781 I +DALS RY LL+ LD K+FG E IK+ Y + DF++ CK Y DGF+F Sbjct: 1124 IIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVF 1183 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ K Sbjct: 1184 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPK 1229 Score = 215 bits (548), Expect = 8e-53 Identities = 128/365 (35%), Positives = 193/365 (52%), Gaps = 36/365 (9%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129 D +K VM RF+ S+Y +D+ KLQ L QG+ +VE YY+++++ M+R NIE +E+ M R Sbjct: 216 DALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMAR 275 Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRPNWKD 1297 F+ GLN+EI D++ Y + L H A K E++++ + PW+ Sbjct: 276 FLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTTT 335 Query: 1298 NKI-------------------PFKPKEDAKSKLSISIPKDRPETNPLI---KSRQIKCF 1411 + KP+ + + + S K + + ++R + C+ Sbjct: 336 SMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCY 395 Query: 1412 RCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV--------- 1564 RC+G+ H+ + PN+RV+VV +G SAS D L D KEP Sbjct: 396 RCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDA 455 Query: 1565 -HGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEK 1741 H + L+ +R LS Q + ++ QR +F +C +K++ C LIID SC N+AS+ +VEK Sbjct: 456 EHYESLIVQRVLSAQMEK-AEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEK 514 Query: 1742 LNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPW 1921 L L + HP Y +Q LN+ G+VKV K VR+ F+IG Y D V CDV PM A +ILLGRPW Sbjct: 515 LALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPW 574 Query: 1922 VRD*D 1936 D D Sbjct: 575 QFDSD 579 >gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group] gi|31431012|gb|AAP52850.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 2447 Score = 185 bits (470), Expect(3) = e-101 Identities = 86/118 (72%), Positives = 100/118 (84%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1313 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1372 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPH+EFAYNR +HS TK PF+IVY P++L PLP Sbjct: 1373 LSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1430 Score = 131 bits (330), Expect(3) = e-101 Identities = 59/85 (69%), Positives = 69/85 (81%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1286 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDASH+A Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIA 1311 Score = 102 bits (255), Expect(3) = e-101 Identities = 51/103 (49%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781 I +DALS RY LL+ LD K+FG E IK+ YA + DF + CK T + +DGF+F Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1180 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ Sbjct: 1181 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223 Score = 214 bits (544), Expect = 2e-52 Identities = 123/357 (34%), Positives = 193/357 (54%), Gaps = 27/357 (7%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129 D +K VM RF+ S+Y +DL +LQ L QG+ +VE YY+++++ ++R N+E ++A M R Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMAR 281 Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309 F+ GLN+EI D+V+ Y M L H A K E++++ + +W+ P Sbjct: 282 FLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTP 341 Query: 1310 FKPKEDAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHI 1435 + + S K + + P + + + R ++C RC+GF H+ Sbjct: 342 PAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHV 401 Query: 1436 ASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTR 1588 + P+KRV+VV +G+ SAS D++ L + + P H + L+ + Sbjct: 402 QRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQ 461 Query: 1589 RALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHP 1768 R LS Q + ++ QR +F +C VK++ C +IID SC N+AS+ +VEKL L + HP Sbjct: 462 RVLSAQMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHP 520 Query: 1769 KLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1939 Y +Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW D D+ Sbjct: 521 HPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 577 Score = 105 bits (262), Expect(2) = 1e-32 Identities = 51/112 (45%), Positives = 73/112 (65%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 L+F IV LHG+P+ IVSDR+++F S+F K L +LGT+L FST HPQ DGQTE +N+ Sbjct: 2135 LYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQI 2194 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPL 59 L +L + KTW+ LP+ EF+YN ++ + +P+E +Y TPL Sbjct: 2195 LEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 2246 Score = 64.3 bits (155), Expect(2) = 1e-32 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = -2 Query: 656 SMKRKIKRICGRCITCRQAKSQ-VHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDL 480 SMKR+I C C++ K++ P GL PL +P W +I MDF+ GLP+ + G D Sbjct: 2047 SMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDS 2106 Query: 479 IFVVVDRFS*MVHFI 435 I+VVVDR + + FI Sbjct: 2107 IWVVVDRLTKVARFI 2121 >gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group] gi|15217296|gb|AAK92640.1|AC079634_1 Putative retroelement [Oryza sativa Japonica Group] gi|31431373|gb|AAP53161.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 1708 Score = 184 bits (467), Expect(3) = 1e-99 Identities = 88/118 (74%), Positives = 99/118 (83%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458 Score = 126 bits (316), Expect(3) = 1e-99 Identities = 57/85 (67%), Positives = 69/85 (81%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AK +++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339 Score = 104 bits (260), Expect(3) = 1e-99 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF++ CK+ T + +GF+F Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254 Score = 206 bits (525), Expect = 4e-50 Identities = 126/378 (33%), Positives = 189/378 (50%), Gaps = 36/378 (9%) Frame = +2 Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093 V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++ M+R Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRC 271 Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273 + + +A M RF+ GLN+EI D++ Y + L H A K E++++ + Sbjct: 272 GLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331 Query: 1274 PWRPNWKDNKI---------PFKPKEDAKSKLSISIPKDRPETNPLI------------- 1387 +W + + P + + S P T + Sbjct: 332 GRASSWTSSNVAAPSTRAAAPSSSNNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASS 391 Query: 1388 -KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM-------------SP 1525 ++R I+C RC+G+ H+ + P+ RVM+V A+G SAS D E +P Sbjct: 392 GRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAP 451 Query: 1526 LEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSES 1705 +D + + H + LV +R LS Q + ++ QR +F +C +K++ C +IID S Sbjct: 452 HQDEEHIGAEAAEHYESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDRGS 510 Query: 1706 CTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAP 1885 C N+AS +VEKL L Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV P Sbjct: 511 CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVP 570 Query: 1886 MHAGHILLGRPWVRD*DA 1939 M A I LGRPW D D+ Sbjct: 571 MQACSIFLGRPWQFDKDS 588 >gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group] Length = 1619 Score = 180 bits (456), Expect(3) = 3e-99 Identities = 84/118 (71%), Positives = 98/118 (83%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQ EVVNRT Sbjct: 1292 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRT 1351 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPH+EFA NR +HS TK PF+IVY P++L PLP Sbjct: 1352 LSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLP 1409 Score = 133 bits (334), Expect(3) = 3e-99 Identities = 60/85 (70%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF Sbjct: 1206 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1265 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS MVHFI HKTDDASH+A Sbjct: 1266 VVVDRFSKMVHFIPCHKTDDASHIA 1290 Score = 100 bits (250), Expect(3) = 3e-99 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781 I ++ALS RY LL+ LD K+FG E IK+ YA + DF + CK T + +DGF+F Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1159 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ Sbjct: 1160 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202 Score = 184 bits (468), Expect = 2e-43 Identities = 116/357 (32%), Positives = 176/357 (49%), Gaps = 27/357 (7%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129 D +K VM RF+ S+Y +DL +LQ L Q E ++A M R Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQ---------------------EETEDAAMAR 260 Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309 F+ GLN+EI D+V+ Y M L H A K E++++ + +W+ P Sbjct: 261 FLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTP 320 Query: 1310 FKPKEDAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHI 1435 + + S K + + P + + + R ++C RC+GF H+ Sbjct: 321 LAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHV 380 Query: 1436 ASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTR 1588 + P+KRV+VV +G+ SAS D++ L + + P H + L+ + Sbjct: 381 QRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQ 440 Query: 1589 RALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHP 1768 R LS Q + ++ QR +F +C VK++ C +IID SC N+AS+ +VEKL L + HP Sbjct: 441 RVLSAQMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHP 499 Query: 1769 KLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1939 Y +Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW D D+ Sbjct: 500 HSYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 556 >gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 889 Score = 182 bits (462), Expect(3) = 4e-99 Identities = 87/118 (73%), Positives = 98/118 (83%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 654 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 713 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYN HS TK PFEIVY P++L PLP Sbjct: 714 LSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 771 Score = 128 bits (322), Expect(3) = 4e-99 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 568 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 627 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 628 VVVDRFSKMAHFIPCHKSDDATHVA 652 Score = 102 bits (254), Expect(3) = 4e-99 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF++ C + T + +GF+F Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVF 521 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K Sbjct: 522 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 567 >gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group] gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1616 Score = 180 bits (456), Expect(3) = 7e-99 Identities = 86/118 (72%), Positives = 97/118 (82%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTK LFSTT HPQ DGQTEVVNRT Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRT 1400 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L P P Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHP 1458 Score = 128 bits (322), Expect(3) = 7e-99 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339 Score = 103 bits (258), Expect(3) = 7e-99 Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF+ CK+ T + +GF+F Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254 Score = 206 bits (523), Expect = 7e-50 Identities = 126/378 (33%), Positives = 189/378 (50%), Gaps = 36/378 (9%) Frame = +2 Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093 V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++ M+R Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRC 271 Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273 + + +A M RF+ GLN+EI D++ Y + L H A K E++++ + Sbjct: 272 GLVENDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRASFRTNISA 331 Query: 1274 PWRPNWKDNK---------IPFKPKEDAKSKLSISIPKDRPETNPLI------------- 1387 +W + P + + S P T + Sbjct: 332 GRASSWTSSNAAAPSTRAAAPSSSSNKLRPSTTNSTPCPSEPTRGVAATPSKTSSSVASS 391 Query: 1388 -KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM-------------SP 1525 ++R I+C RC+G+ H+ + P+ RVM+V A+G SAS D E +P Sbjct: 392 GRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAP 451 Query: 1526 LEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSES 1705 +D + + H + LV +R LS Q + ++ QR +F +C +K++ C +IID S Sbjct: 452 HQDEEHIGAEAAEHYESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGS 510 Query: 1706 CTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAP 1885 C N+AS +VEKL L Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV P Sbjct: 511 CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVP 570 Query: 1886 MHAGHILLGRPWVRD*DA 1939 M A +LLGRPW D D+ Sbjct: 571 MQACSMLLGRPWQFDKDS 588 >gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group] Length = 1619 Score = 183 bits (464), Expect(3) = 2e-98 Identities = 87/118 (73%), Positives = 99/118 (83%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1237 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1296 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 ++T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP Sbjct: 1297 VSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1354 Score = 128 bits (322), Expect(3) = 2e-98 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1210 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 1211 VVVDRFSKMAHFIPCHKSDDATHVA 1235 Score = 99.8 bits (247), Expect(3) = 2e-98 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Frame = -1 Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLFREN 772 DALS RY +LS LD K+FG E IKE YA + DF++ CK+ T + +GF+FR N Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107 Query: 771 KLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 KLC+P ++ L++E+HGGGLMGHFGV KT + +H + K Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150 Score = 164 bits (416), Expect = 2e-37 Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 21/319 (6%) Frame = +2 Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093 V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271 Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIK--------XXXX 1249 + + +A M RF+ LN+EI D++ Y + L H A K E++++ Sbjct: 272 GLVENDDAGMARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331 Query: 1250 XXXXXXNNPWRPNWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFK 1429 +N RP+ N P P E + ++ + K L ++R I+C RC+G+ Sbjct: 332 AAPSSSSNKLRPS-TTNSTPC-PSEPTRG-VAATPSKSSSSVASLGRTRDIQCLRCKGYG 388 Query: 1430 HIASEGPNKRVMVVLANGDIESASSSDNEM-------------SPLEDCSDVEVKEPVHG 1570 H+ + P+ RVM+V A+G SAS D E +P +D ++ + H Sbjct: 389 HVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGEGDAPHQDEEHIKAEAAEHY 448 Query: 1571 DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNL 1750 + LV +R LS Q + ++ QR +F +C +K++ C +IID SC N+AS +VEKL L Sbjct: 449 ESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLAL 507 Query: 1751 KLQKHPKLYKLQLLNDCGE 1807 Q HP+ Y +Q LN G+ Sbjct: 508 STQPHPQPYYIQWLNSSGK 526 >dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] Length = 1587 Score = 184 bits (467), Expect(3) = 2e-98 Identities = 88/118 (74%), Positives = 99/118 (83%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458 Score = 126 bits (317), Expect(3) = 2e-98 Identities = 57/84 (67%), Positives = 69/84 (82%) Frame = -2 Query: 650 KRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIFV 471 +R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IFV Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315 Query: 470 VVDRFS*MVHFILSHKTDDASHVA 399 VVDRFS M HFI HK+DDA+HVA Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVA 1339 Score = 100 bits (249), Expect(3) = 2e-98 Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF++ CK+ T + +GF+F Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++ L++E+HGGGLMGHFGV K + +HF+ K Sbjct: 1209 RANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254 Score = 201 bits (510), Expect = 2e-48 Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 38/380 (10%) Frame = +2 Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093 V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271 Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273 + + +A M RF+ GLN+EI D++ Y + L H A K E++++ + Sbjct: 272 GLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331 Query: 1274 PWRPNWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLI---------------------- 1387 +W + A S S K RP T Sbjct: 332 GCASSWTSSNAAAPSTRAAAP--SCSSNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVA 389 Query: 1388 ---KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM------------- 1519 ++R I+C RC+G+ H+ + P+ RVM+V A+G S D E Sbjct: 390 SSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGD 449 Query: 1520 SPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDS 1699 +P +D + + H + LV +R LS Q + ++ Q +F +C +K++ C +IID Sbjct: 450 APHQDEEHIRAEAAEHYESLVVQRVLSAQMER-AEQNQLHTLFQTKCVIKERSCHVIIDG 508 Query: 1700 ESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDV 1879 SC N+AS +VEKL L Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV Sbjct: 509 GSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDV 568 Query: 1880 APMHAGHILLGRPWVRD*DA 1939 PM A +LLGRPW D D+ Sbjct: 569 VPMQACSMLLGRPWQFDKDS 588 >ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max] Length = 1176 Score = 196 bits (498), Expect(3) = 2e-98 Identities = 93/118 (78%), Positives = 104/118 (88%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFFKEIVRLHG+PR+IVSDRDAKFLS+F +TLW K+GTKLLFSTT HPQ DGQTEVVNRT Sbjct: 910 LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 969 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L TLLR ++KKN+K+WE CLPHVEFAYNR VHS T SPFEIVY FN LTPL+L P+P Sbjct: 970 LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLLPMP 1027 Score = 128 bits (321), Expect(3) = 2e-98 Identities = 56/85 (65%), Positives = 67/85 (78%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + + CG CI C+QAKS+V PHGLYTPLP+P PW DISMDFVLGLP+ ++G+D +F Sbjct: 824 MRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVF 883 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI K DDA HVA Sbjct: 884 VVVDRFSKMAHFIPCKKVDDACHVA 908 Score = 86.7 bits (213), Expect(3) = 2e-98 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = -1 Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 RHDGFLF+ NKLCVP C++RE LV ESH GGLMGHFGV KTL + QEHF+ Sbjct: 771 RHDGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFF 820 Score = 268 bits (684), Expect = 1e-68 Identities = 152/336 (45%), Positives = 211/336 (62%), Gaps = 10/336 (2%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132 EMK VM KR++ + Y + + KLQGL QG++ VE YYK+M++ ++RANIE D E TM RF Sbjct: 153 EMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEEDSEDTMARF 212 Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNW-----KD 1297 + GLN EI DVVEL YV +++LLH+A++VE+QIK N + NW K+ Sbjct: 213 LNGLNPEIRDVVELQEYVVLDDLLHRALRVEQQIKRRSATRRNSPNT-YNQNWANRSKKE 271 Query: 1298 NKIPFKPKEDAKSKLSISIPKDRPETNPLIKS-----RQIKCFRCQGFKHIASEGPNKRV 1462 F+P + S + + N S R IKCF+C G HIASE P +R Sbjct: 272 GGNSFRPAATSPYGKSATPSVGGSKHNTSTSSSNTGTRNIKCFKCLGRGHIASECPTRRT 331 Query: 1463 MVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREH 1642 M++ A+G+I +S++E+S E + +E + GD+L+ RR L Q + D+ QRE+ Sbjct: 332 MIMKADGEI----TSESEISEEEVEEEEYEEEAMQGDMLMVRRLLGNQMQ-PLDDNQREN 386 Query: 1643 IFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNK 1822 IFH RC + K+C LI+D SCTNVAS+ LV KLNL+ + HP+ YKLQ L++ EVKV + Sbjct: 387 IFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEVKVTQ 446 Query: 1823 QVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930 QV V +IG+Y D+V+CDV PM A H+LLGRPW D Sbjct: 447 QVEVCLTIGRYNDKVLCDVVPMEATHVLLGRPWQYD 482 >gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] Length = 1720 Score = 183 bits (464), Expect(3) = 6e-98 Identities = 84/118 (71%), Positives = 100/118 (84%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+ Sbjct: 1372 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1431 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++K NIK WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P Sbjct: 1432 LSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1489 Score = 125 bits (315), Expect(3) = 6e-98 Identities = 57/85 (67%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1345 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA++VA Sbjct: 1346 VVVDRFSKMAHFIPCHKSDDAANVA 1370 Score = 100 bits (249), Expect(3) = 6e-98 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%) Frame = -1 Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGF 787 D + +DALS RY +LS LD K+FG E IK+ Y + DF++ C++ T + ++GF Sbjct: 1178 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1237 Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 +FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+ Sbjct: 1238 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1282 Score = 182 bits (463), Expect = 6e-43 Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 36/361 (9%) Frame = +2 Query: 956 MKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRFI 1135 +K+ M R++ +Y +DL LQ L QG +VE YY++++ MIR I D EA + RF+ Sbjct: 259 LKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFM 318 Query: 1136 AGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP------ 1285 GLN++I ++E Y + L H A K E++++ + + W P Sbjct: 319 GGLNRDIQTILEYKDYXTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTS 378 Query: 1286 --------------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQG 1423 + +D + AKS S T ++ ++ C RC+G Sbjct: 379 TRPPASAPPVSAASSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKG 438 Query: 1424 FKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG----------- 1570 H A E P+KRVM++ +G +SAS D E L + V + Sbjct: 439 GGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVADTAQETQYMAADYADR 498 Query: 1571 -DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLN 1747 + LV +R LS+Q ++ QR ++FH + VK++ +IID SC N+AS +VEKL+ Sbjct: 499 YESLVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLS 557 Query: 1748 LKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVR 1927 L + HP Y +Q N+ G+VKV + VRV FSI Y D V CDV PM A +LLGRPW Sbjct: 558 LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 617 Query: 1928 D 1930 D Sbjct: 618 D 618 >ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum] Length = 1191 Score = 171 bits (434), Expect(3) = 1e-97 Identities = 83/118 (70%), Positives = 97/118 (82%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT Sbjct: 1048 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1107 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP Sbjct: 1108 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1165 Score = 126 bits (317), Expect(3) = 1e-97 Identities = 61/102 (59%), Positives = 74/102 (72%) Frame = -1 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778 + +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+ Sbjct: 832 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 891 Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY Sbjct: 892 ENKLCVPNCSLRELFVREAHYGGLMGHFGVPKTLEILSEHFY 933 Score = 110 bits (275), Expect(3) = 1e-97 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 25/111 (22%) Frame = -2 Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDIS----------------- 528 SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDIS Sbjct: 936 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVF 995 Query: 527 --------MDFVLGLPRNRHGRDLIFVVVDRFS*MVHFILSHKTDDASHVA 399 MDF+LGLPR ++G+D IFVVVDRFS M FI KT+DASHVA Sbjct: 996 NTPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVA 1046 Score = 256 bits (655), Expect = 3e-65 Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 11/337 (3%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132 EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ RF Sbjct: 216 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 275 Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288 + GLN EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN Sbjct: 276 LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 329 Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459 W ++ K P KP++D K K+ P+++ S I+C +C G H+ E P++R Sbjct: 330 WSTQEGKAPSKPQDDRGKGKVEEGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 387 Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639 +++ NG+ ES S E + +++ P G + V RR ++I DE QRE Sbjct: 388 NILLRENGEYESEKSEGEEEEREGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 446 Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819 ++FH RC +K K +IID SC NV S+ LV+KL + K P Y+LQ LNDCGEVKVN Sbjct: 447 NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRPTPYRLQWLNDCGEVKVN 506 Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930 KQ + F++G+Y DE++CDV PM A H+LLGRPW D Sbjct: 507 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYD 543 >gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] Length = 1717 Score = 182 bits (461), Expect(3) = 1e-97 Identities = 83/118 (70%), Positives = 100/118 (84%) Frame = -3 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+ Sbjct: 1369 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1428 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++K N+K WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P Sbjct: 1429 LSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1486 Score = 125 bits (315), Expect(3) = 1e-97 Identities = 57/85 (67%), Positives = 70/85 (82%) Frame = -2 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1342 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA++VA Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVA 1367 Score = 100 bits (249), Expect(3) = 1e-97 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%) Frame = -1 Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGF 787 D + +DALS RY +LS LD K+FG E IK+ Y + DF++ C++ T + ++GF Sbjct: 1175 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1234 Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 +FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+ Sbjct: 1235 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1279 Score = 182 bits (461), Expect = 1e-42 Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 36/361 (9%) Frame = +2 Query: 956 MKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRFI 1135 +K+ M R++ +Y +DL LQ L QG +VE YY++++ MIR I D EA + RF+ Sbjct: 256 LKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFM 315 Query: 1136 AGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP------ 1285 GLN++I ++E Y + L H A K E++++ + + W P Sbjct: 316 GGLNRDIQTILEYKDYNTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTS 375 Query: 1286 --------------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQG 1423 + +D + AKS S T ++ ++ C RC+G Sbjct: 376 TRPPASAPPVSAANSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKG 435 Query: 1424 FKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG----------- 1570 H A E P+KRVM++ +G +SAS D E L + V + Sbjct: 436 GGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVXDTAQETQYMAADYADR 495 Query: 1571 -DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLN 1747 + LV +R LS+Q ++ QR ++FH + VK++ +IID SC N+AS +VEKL+ Sbjct: 496 YESLVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLS 554 Query: 1748 LKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVR 1927 L + HP Y +Q N+ G+VKV + VRV FSI Y D V CDV PM A +LLGRPW Sbjct: 555 LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 614 Query: 1928 D 1930 D Sbjct: 615 D 615