BLASTX nr result

ID: Akebia25_contig00009547 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00009547
         (2934 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              261   e-121
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]   251   e-111
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     226   e-107
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   193   e-107
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g...   193   e-106
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   252   e-102
gb|AAD17351.1| contains similarity to retrovirus-related polypro...   276   e-101
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   252   e-101
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         215   e-101
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   214   e-101
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   206   1e-99
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   184   3e-99
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   182   4e-99
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   206   7e-99
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   183   2e-98
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       201   2e-98
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664...   268   2e-98
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  183   6e-98
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594...   256   1e-97
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  182   1e-97

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  205 bits (522), Expect(4) = e-121
 Identities = 96/119 (80%), Positives = 108/119 (90%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1504 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 1563

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
            L+TLLR +IKKN+KTWEDCLPHVEFAYN  +HSA+KFSPF+IVY FN  TPL+L PLP+
Sbjct: 1564 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPL 1622



 Score =  143 bits (361), Expect(4) = e-121
 Identities = 64/104 (61%), Positives = 83/104 (79%)
 Frame = -1

Query: 963  DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFL 784
            D + +DALS RYVLLS+LDAKL GFE IK LYA + DF + Y+ C+K   G Y+RHDGFL
Sbjct: 1311 DNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFL 1370

Query: 783  FRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            F +N+LC+PN ++RE  +RE+HGGGLMGHFGV+KT+ V Q+HF+
Sbjct: 1371 FYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFH 1414



 Score =  134 bits (338), Expect(4) = e-121
 Identities = 62/85 (72%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            MKR ++RIC RC TC+QAK++  PHGLYTPLPIPS PW DISMDFV+GLPR R G+D IF
Sbjct: 1418 MKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIF 1477

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA H+A
Sbjct: 1478 VVVDRFSKMAHFIPCHKTDDAIHIA 1502



 Score = 24.6 bits (52), Expect(4) = e-121
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 42   LSECVNLDGKRKAE 1
            LSE V+LDGK+KAE
Sbjct: 1622 LSERVSLDGKKKAE 1635



 Score =  261 bits (667), Expect = 1e-66
 Identities = 145/302 (48%), Positives = 198/302 (65%), Gaps = 2/302 (0%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
            +MK++M KRF+ SHYY++L+ +L+ LVQG+ +VE YYK+M+  M+RA+I+ D EA M+RF
Sbjct: 510  QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569

Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPF 1312
            + GLN++I D +E+ HYVE+EELLHKAI  EKQ+K            P     KD +  F
Sbjct: 570  MGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKP--SYHKDERSGF 627

Query: 1313 KP--KEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGD 1486
            +   K   K K+     K + +   + ++R IK F+CQG  H ASE  NKR+M++   G+
Sbjct: 628  QKDYKPFIKPKVEDQDQKGKGKA-VMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGE 686

Query: 1487 IESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHV 1666
            IES      E S  ED      + P  G+LLVT +ALS+  K D ++EQRE++FH  C V
Sbjct: 687  IESEDEQLEESSSTED-----YEAPSKGELLVTMKALSVIAKTD-EQEQRENLFHSSCMV 740

Query: 1667 KDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSI 1846
             DKVC LIID  SCTNVAS  +VEKL LK+ KHP+ YKLQ LN+ GE+ V++QV+VP SI
Sbjct: 741  NDKVCSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSI 800

Query: 1847 GK 1852
            GK
Sbjct: 801  GK 802


>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
          Length = 1173

 Score =  192 bits (488), Expect(3) = e-111
 Identities = 96/130 (73%), Positives = 106/130 (81%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF++IVRLHG+PR+IVSDRD KFLS F K LW KLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 905  LFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRT 964

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV* 35
            L+TLLR II+KN+K WEDCLP  EFAYNR VHS T FSPFEIVY FN LTPL+L PLPV 
Sbjct: 965  LSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVN 1024

Query: 34   VCESRWKKKS 5
               S  +KK+
Sbjct: 1025 EMTSLDEKKN 1034



 Score =  132 bits (332), Expect(3) = e-111
 Identities = 64/102 (62%), Positives = 76/102 (74%)
 Frame = -1

Query: 948  DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFRENK 769
            DALS RY L+STL+AKL GFE +KELYA + DF   Y  C+K   G ++R DG+LFREN+
Sbjct: 717  DALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENR 776

Query: 768  LCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            LCVPN +MRE LVRE+H GGLMGHFGV KTL V  EH +  K
Sbjct: 777  LCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPK 818



 Score =  129 bits (325), Expect(3) = e-111
 Identities = 61/85 (71%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            MKR ++R C RCIT R AKS+V PHGLYT L +PS PW+DISMDFVLGL R+R+GRD IF
Sbjct: 819  MKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIF 878

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA+H+A
Sbjct: 879  VVVDRFSKMTHFISCHKTDDATHIA 903



 Score =  251 bits (642), Expect = 1e-63
 Identities = 133/265 (50%), Positives = 173/265 (65%), Gaps = 4/265 (1%)
 Frame = +2

Query: 1046 NVEYYYKKMKITMIRANIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVE 1225
            NV+ Y+K+M+I MIRAN+E D+E TM RF+ GLN++IA+VVEL HYVE+E ++H AIKVE
Sbjct: 143  NVDDYHKEMEIAMIRANVEEDRETTMARFLNGLNRDIANVVELQHYVELENMVHMAIKVE 202

Query: 1226 KQIKXXXXXXXXXXNNP--WRPNW-KDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSR 1396
            +Q+K           +   WRPN  KD  + FK K     +   +   ++ +     ++ 
Sbjct: 203  RQLKRKGTLSFQNPGSSASWRPNGRKDEGVVFKSKTKPPKRRDEAPNVNKGKNESQTRNH 262

Query: 1397 QIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEMSP-LEDCSDVEVKEPVHGD 1573
             IKCF   G  HIAS+ PNKR M+   +G++E+ S  D++  P LED  D  V+ PV G+
Sbjct: 263  DIKCFHYLGVGHIASQCPNKRTMIAHVDGEVETESEEDDDQMPSLEDSCDDNVEYPVEGE 322

Query: 1574 LLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLK 1753
             LV RRALS Q K D  E+QRE+IFH RCH+ +KVC +IID  SC NVAST LVEKLNL 
Sbjct: 323  SLVARRALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVASTTLVEKLNLP 382

Query: 1754 LQKHPKLYKLQLLNDCGEVKVNKQV 1828
              KHP+ YKLQ LNDCGEVK  K V
Sbjct: 383  TLKHPRPYKLQWLNDCGEVKEYKDV 407


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  193 bits (491), Expect(3) = e-107
 Identities = 91/119 (76%), Positives = 102/119 (85%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
            L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T   PFE+VY F  L+P++L PLP+
Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 1434



 Score =  133 bits (335), Expect(3) = e-107
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R+  RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1230 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 1289

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDASH+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKSDDASHIA 1314



 Score =  112 bits (279), Expect(3) = e-107
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781
            I +DALS + VLL+ L+ K+ G E IKELY+ +LDF E Y  C        Y  HDGFLF
Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 1183

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLCVP+C++R  L++E+H GGLMGHFG  KT  +  +HFY  K
Sbjct: 1184 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 1229



 Score =  226 bits (576), Expect = 5e-56
 Identities = 133/350 (38%), Positives = 193/350 (55%), Gaps = 24/350 (6%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
            EMK  M  RF+  HY +DL+ KLQ L QGS++V+ YYK+M+  MIRAN+  D+E ++ RF
Sbjct: 213  EMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARF 272

Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXX--------NNPWRPN 1288
            ++GL++ I  +VE   Y  + EL+H+A K E+Q++                   + +   
Sbjct: 273  MSGLHRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSR 332

Query: 1289 WKDNKIPFKPKEDA--------KSKLSISIPKDRPET--------NPLIKSRQIKCFRCQ 1420
               N+  F               S   ++ P +R               KS  I+CF+C 
Sbjct: 333  GSGNRGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCG 392

Query: 1421 GFKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALS 1600
            G  H+A E PN R +VV   G+ ES S  + E S  E+  + ++ E   G  LV  + LS
Sbjct: 393  GRGHVARECPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDICEFESGAALVVTQILS 452

Query: 1601 IQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYK 1780
            +Q  +D +  QR ++F  R  V+DKV  +IID  SC N+AS  +VEKL LKL KHP  Y 
Sbjct: 453  VQ-MSDAENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYH 511

Query: 1781 LQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930
            +Q LN+ G +K+ ++V+VPF IG+Y+D + CDVAPM   H+LLGRPW  D
Sbjct: 512  VQWLNNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRPWQYD 561


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 681

 Score =  193 bits (491), Expect(3) = e-107
 Identities = 91/119 (76%), Positives = 102/119 (85%)
 Frame = -3

Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
           LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343

Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
           L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T   PFE+VY F  L+P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 402



 Score =  133 bits (335), Expect(3) = e-107
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = -2

Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
           M+R ++R+  RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257

Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
           VVVDRFS M HFI  HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282



 Score =  112 bits (279), Expect(3) = e-107
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781
           I +DALS + VLL+ L+ K+ G E IKELY+ +LDF E Y  C        Y  HDGFLF
Sbjct: 92  IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151

Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
           R NKLCVP+C++R  L++E+H GGLMGHFG  KT  +  +HFY  K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197


>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
           gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
           Japonica Group]
          Length = 681

 Score =  193 bits (490), Expect(3) = e-106
 Identities = 91/119 (76%), Positives = 101/119 (84%)
 Frame = -3

Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
           LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343

Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
           L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T   PFE+VY F  L P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPL 402



 Score =  133 bits (335), Expect(3) = e-106
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = -2

Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
           M+R ++R+  RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257

Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
           VVVDRFS M HFI  HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282



 Score =  110 bits (275), Expect(3) = e-106
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781
           I +DALS + VLL+ L+ K+ G E IKELY  +LDF E Y  C        Y  HDGFLF
Sbjct: 92  IVADALSRKNVLLNQLEVKVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151

Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
           R NKLCVP+C++R  L++E+H GGLMGHFG  KT  +  +HFY  K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  171 bits (434), Expect(3) = e-102
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L  +LR I+K  + +WED LP VEFAYNR  HS+T  +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383



 Score =  126 bits (317), Expect(3) = e-102
 Identities = 61/102 (59%), Positives = 74/102 (72%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778
            + +DALS RYVL+STL +KL GF+QIK LYA + DF E +  CK      +   D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134

Query: 777  ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            ENKLCVPNC++RE  VRE+H GGLMGHFGV KTL +  EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176



 Score =  124 bits (311), Expect(3) = e-102
 Identities = 54/86 (62%), Positives = 70/86 (81%)
 Frame = -2

Query: 656  SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
            SM++ ++++C  C+ C+QAKS+  PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSI 1238

Query: 476  FVVVDRFS*MVHFILSHKTDDASHVA 399
            FVVVDRFS M  FI   KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264



 Score =  252 bits (644), Expect = 6e-64
 Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 11/339 (3%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
            EMK VM KRFI S++ +DL  +LQ L QGSM+V+ Y+K M + MI+AN   ++EAT+ RF
Sbjct: 190  EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249

Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288
            + GLN EIA+VVE+  YV ++EL+  ++KVEKQI+          NN WR  PN      
Sbjct: 250  LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 303

Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459
            W  ++ K P KP++D  K K+        P+++    S  I+C +C G  H+  E P++R
Sbjct: 304  WSTQEGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 361

Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639
             +++  NG+ ES  S   E        + +++ P  G + V RR ++I      DE QRE
Sbjct: 362  NILLRENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 420

Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819
            ++FH RC +K K   +IID  SC NV S+ LV+KL +   K    Y+LQ LNDCGEV+VN
Sbjct: 421  NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVN 480

Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1936
            KQ  + F++G+Y DE++CDV PM A H+LLGRPW  D D
Sbjct: 481  KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519


>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
            zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
            E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
            putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score =  209 bits (532), Expect(3) = e-101
 Identities = 98/119 (82%), Positives = 109/119 (91%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 879  LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
            L+TLLR +IKKN+KTWEDCLPHVEFAYN  VHSATKFSPF+IVY FN +TPL+L PLP+
Sbjct: 939  LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPL 997



 Score =  129 bits (323), Expect(3) = e-101
 Identities = 59/85 (69%), Positives = 68/85 (80%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            MKR ++R+C RC TC+QAK++  PHGL TPLPIP  PW DISMDFV+GLPR R G+D IF
Sbjct: 793  MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIF 852

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA H+A
Sbjct: 853  VVVDRFSKMAHFIPCHKTDDAMHIA 877



 Score = 84.0 bits (206), Expect(3) = e-101
 Identities = 33/50 (66%), Positives = 44/50 (88%)
 Frame = -1

Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
           RH+GFLF +N+LC+PN ++RE  +RE+HGGGLMGHFGV+KTL V Q+HF+
Sbjct: 740 RHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFH 789



 Score =  276 bits (705), Expect = 5e-71
 Identities = 142/327 (43%), Positives = 211/327 (64%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
            +++K++M +RF+ SHY+++L+ +L+ LVQG+  VE Y+K+M+  M+RA+++ + EATM+R
Sbjct: 130  NQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSR 189

Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309
            F+ GLN++I D  E+ HY  +EEL HKA+  EKQIK          + P     ++ K  
Sbjct: 190  FMGGLNRDILDRFEVIHYENLEELFHKAVMFEKQIKRRSAKPSYNSSKP--SYQREEKSG 247

Query: 1310 FKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDI 1489
            F+ +     K  +     + +   + ++R +KCF+C G  H ASE  NKR+M++  +G++
Sbjct: 248  FQKEYKPFVKPKVEEISSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEV 307

Query: 1490 ESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVK 1669
            ES      E       SDVE  E   G+LLVT R LS+  K + ++ QRE++FH RC +K
Sbjct: 308  ESEDEKPEE-------SDVE--EAPKGELLVTMRVLSVLNKAE-EQAQRENLFHTRCLIK 357

Query: 1670 DKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIG 1849
             KVC LIID  SCTNVAS  +V+KL L+   HPK YKLQ LN+ GE+ V +QV+VP +IG
Sbjct: 358  GKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAVTRQVQVPLAIG 417

Query: 1850 KYVDEVICDVAPMHAGHILLGRPWVRD 1930
            KY DE++CD+ P+ A H+LLGRPW  D
Sbjct: 418  KYEDEILCDILPLEASHVLLGRPWQSD 444


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  171 bits (434), Expect(3) = e-101
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L  +LR I+K  + +WED LP VEFAYNR  HS+T  +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383



 Score =  126 bits (317), Expect(3) = e-101
 Identities = 61/102 (59%), Positives = 74/102 (72%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778
            + +DALS RYVL+STL +KL GF+QIK LYA + DF E +  CK      +   D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134

Query: 777  ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            ENKLCVPNC++RE  VRE+H GGLMGHFGV KTL +  EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176



 Score =  123 bits (308), Expect(3) = e-101
 Identities = 54/86 (62%), Positives = 70/86 (81%)
 Frame = -2

Query: 656  SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
            SM++ ++++C  C+ C+QAKS+  PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSI 1238

Query: 476  FVVVDRFS*MVHFILSHKTDDASHVA 399
            FVVVDRFS M  FI   KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264



 Score =  252 bits (644), Expect = 6e-64
 Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 11/339 (3%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
            EMK VM KRFI S++ +DL  +LQ L QGSM+V+ Y+K M + MI+AN   ++EAT+ RF
Sbjct: 190  EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249

Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288
            + GLN EIA+VVE+  YV ++EL+  ++KVEKQI+          NN WR  PN      
Sbjct: 250  LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 303

Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459
            W  ++ K P KP++D  K K+        P+++    S  I+C +C G  H+  E P++R
Sbjct: 304  WSTQEGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 361

Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639
             +++  NG+ ES  S   E        + +++ P  G + V RR ++I      DE QRE
Sbjct: 362  NILLRENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 420

Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819
            ++FH RC +K K   +IID  SC NV S+ LV+KL +   K    Y+LQ LNDCGEV+VN
Sbjct: 421  NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVN 480

Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1936
            KQ  + F++G+Y DE++CDV PM A H+LLGRPW  D D
Sbjct: 481  KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  188 bits (478), Expect(3) = e-101
 Identities = 88/118 (74%), Positives = 101/118 (85%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRDAKFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1375

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WEDCLPH+EFAYNR +HS TK  PF+IVY      P++L PLP
Sbjct: 1376 LSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1433



 Score =  130 bits (327), Expect(3) = e-101
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + R+  RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR R GRD +F
Sbjct: 1230 MRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVF 1289

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA+H+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKTDDATHIA 1314



 Score =  102 bits (253), Expect(3) = e-101
 Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTN-GTYFRHDGFLF 781
            I +DALS RY LL+ LD K+FG E IK+ Y  + DF++    CK       Y   DGF+F
Sbjct: 1124 IIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVF 1183

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++R  L++E+HGGGLMGHFG  KT  +   HF+  K
Sbjct: 1184 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPK 1229



 Score =  215 bits (548), Expect = 8e-53
 Identities = 128/365 (35%), Positives = 193/365 (52%), Gaps = 36/365 (9%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
            D +K VM  RF+ S+Y +D+  KLQ L QG+ +VE YY+++++ M+R NIE  +E+ M R
Sbjct: 216  DALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMAR 275

Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRPNWKD 1297
            F+ GLN+EI D++    Y  +  L H A K E++++          +     PW+     
Sbjct: 276  FLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTTT 335

Query: 1298 NKI-------------------PFKPKEDAKSKLSISIPKDRPETNPLI---KSRQIKCF 1411
            +                       KP+  + +  + S  K     + +    ++R + C+
Sbjct: 336  SMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCY 395

Query: 1412 RCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV--------- 1564
            RC+G+ H+  + PN+RV+VV  +G   SAS  D     L    D   KEP          
Sbjct: 396  RCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDA 455

Query: 1565 -HGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEK 1741
             H + L+ +R LS Q +   ++ QR  +F  +C +K++ C LIID  SC N+AS+ +VEK
Sbjct: 456  EHYESLIVQRVLSAQMEK-AEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEK 514

Query: 1742 LNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPW 1921
            L L  + HP  Y +Q LN+ G+VKV K VR+ F+IG Y D V CDV PM A +ILLGRPW
Sbjct: 515  LALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPW 574

Query: 1922 VRD*D 1936
              D D
Sbjct: 575  QFDSD 579


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  185 bits (470), Expect(3) = e-101
 Identities = 86/118 (72%), Positives = 100/118 (84%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1313 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1372

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPH+EFAYNR +HS TK  PF+IVY      P++L PLP
Sbjct: 1373 LSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1430



 Score =  131 bits (330), Expect(3) = e-101
 Identities = 59/85 (69%), Positives = 69/85 (81%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + R   RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1286

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDASH+A
Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIA 1311



 Score =  102 bits (255), Expect(3) = e-101
 Identities = 51/103 (49%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
            I +DALS RY LL+ LD K+FG E IK+ YA + DF +    CK   T   +  +DGF+F
Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1180

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            R NKLC+P  ++R  L++E+HGGGLMGHFG  KT  +   HF+
Sbjct: 1181 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223



 Score =  214 bits (544), Expect = 2e-52
 Identities = 123/357 (34%), Positives = 193/357 (54%), Gaps = 27/357 (7%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
            D +K VM  RF+ S+Y +DL  +LQ L QG+ +VE YY+++++ ++R N+E  ++A M R
Sbjct: 222  DALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMAR 281

Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309
            F+ GLN+EI D+V+   Y  M  L H A K E++++          +     +W+    P
Sbjct: 282  FLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTP 341

Query: 1310 FKPKEDAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHI 1435
               +  + S               K +    +  P  + +  +   R ++C RC+GF H+
Sbjct: 342  PAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHV 401

Query: 1436 ASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTR 1588
              + P+KRV+VV  +G+  SAS  D++   L      + + P          H + L+ +
Sbjct: 402  QRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQ 461

Query: 1589 RALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHP 1768
            R LS Q +   ++ QR  +F  +C VK++ C +IID  SC N+AS+ +VEKL L  + HP
Sbjct: 462  RVLSAQMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHP 520

Query: 1769 KLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1939
              Y +Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW  D D+
Sbjct: 521  HPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 577



 Score =  105 bits (262), Expect(2) = 1e-32
 Identities = 51/112 (45%), Positives = 73/112 (65%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            L+F  IV LHG+P+ IVSDR+++F S+F K L  +LGT+L FST  HPQ DGQTE +N+ 
Sbjct: 2135 LYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQI 2194

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPL 59
            L  +L   +    KTW+  LP+ EF+YN    ++ + +P+E +Y     TPL
Sbjct: 2195 LEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 2246



 Score = 64.3 bits (155), Expect(2) = 1e-32
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = -2

Query: 656  SMKRKIKRICGRCITCRQAKSQ-VHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDL 480
            SMKR+I      C  C++ K++   P GL  PL +P   W +I MDF+ GLP+ + G D 
Sbjct: 2047 SMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDS 2106

Query: 479  IFVVVDRFS*MVHFI 435
            I+VVVDR + +  FI
Sbjct: 2107 IWVVVDRLTKVARFI 2121


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  184 bits (467), Expect(3) = 1e-99
 Identities = 88/118 (74%), Positives = 99/118 (83%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458



 Score =  126 bits (316), Expect(3) = 1e-99
 Identities = 57/85 (67%), Positives = 69/85 (81%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AK +++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339



 Score =  104 bits (260), Expect(3) = 1e-99
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
            + +DALS RY +LS LD K+FG E IKE YA + DF++    CK+  T   +   +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++R  L++E+HGGGLMGHFGV KT  +  +HF+  K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254



 Score =  206 bits (525), Expect = 4e-50
 Identities = 126/378 (33%), Positives = 189/378 (50%), Gaps = 36/378 (9%)
 Frame = +2

Query: 914  VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
            V SN        D MK VM  RF+ S++ +DL  KLQ L QG+ +VE YY+ ++  M+R 
Sbjct: 212  VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRC 271

Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273
             +  + +A M RF+ GLN+EI D++    Y  +  L H A K E++++          + 
Sbjct: 272  GLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331

Query: 1274 PWRPNWKDNKI---------PFKPKEDAKSKLSISIPKDRPETNPLI------------- 1387
                +W  + +         P       +   + S P     T  +              
Sbjct: 332  GRASSWTSSNVAAPSTRAAAPSSSNNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASS 391

Query: 1388 -KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM-------------SP 1525
             ++R I+C RC+G+ H+  + P+ RVM+V A+G   SAS  D E              +P
Sbjct: 392  GRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAP 451

Query: 1526 LEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSES 1705
             +D   +  +   H + LV +R LS Q +   ++ QR  +F  +C +K++ C +IID  S
Sbjct: 452  HQDEEHIGAEAAEHYESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDRGS 510

Query: 1706 CTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAP 1885
            C N+AS  +VEKL L  Q HP+ Y +Q LN  G+VKV + VRV F+IG Y D + CDV P
Sbjct: 511  CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVP 570

Query: 1886 MHAGHILLGRPWVRD*DA 1939
            M A  I LGRPW  D D+
Sbjct: 571  MQACSIFLGRPWQFDKDS 588


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  180 bits (456), Expect(3) = 3e-99
 Identities = 84/118 (71%), Positives = 98/118 (83%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 1292 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRT 1351

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPH+EFA NR +HS TK  PF+IVY      P++L PLP
Sbjct: 1352 LSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLP 1409



 Score =  133 bits (334), Expect(3) = 3e-99
 Identities = 60/85 (70%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + R   RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1206 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1265

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS MVHFI  HKTDDASH+A
Sbjct: 1266 VVVDRFSKMVHFIPCHKTDDASHIA 1290



 Score =  100 bits (250), Expect(3) = 3e-99
 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
            I ++ALS RY LL+ LD K+FG E IK+ YA + DF +    CK   T   +  +DGF+F
Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1159

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            R NKLC+P  ++R  L++E+HGGGLMGHFG  KT  +   HF+
Sbjct: 1160 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202



 Score =  184 bits (468), Expect = 2e-43
 Identities = 116/357 (32%), Positives = 176/357 (49%), Gaps = 27/357 (7%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
            D +K VM  RF+ S+Y +DL  +LQ L Q                     E  ++A M R
Sbjct: 222  DALKRVMRARFVPSYYARDLLNRLQQLRQ---------------------EETEDAAMAR 260

Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309
            F+ GLN+EI D+V+   Y  M  L H A K E++++          +     +W+    P
Sbjct: 261  FLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTP 320

Query: 1310 FKPKEDAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHI 1435
               +  + S               K +    +  P  + +  +   R ++C RC+GF H+
Sbjct: 321  LAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHV 380

Query: 1436 ASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTR 1588
              + P+KRV+VV  +G+  SAS  D++   L      + + P          H + L+ +
Sbjct: 381  QRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQ 440

Query: 1589 RALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHP 1768
            R LS Q +   ++ QR  +F  +C VK++ C +IID  SC N+AS+ +VEKL L  + HP
Sbjct: 441  RVLSAQMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHP 499

Query: 1769 KLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1939
              Y +Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW  D D+
Sbjct: 500  HSYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 556


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  182 bits (462), Expect(3) = 4e-99
 Identities = 87/118 (73%), Positives = 98/118 (83%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 654  LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 713

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYN   HS TK  PFEIVY      P++L PLP
Sbjct: 714  LSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 771



 Score =  128 bits (322), Expect(3) = 4e-99
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -2

Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
           M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 568 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 627

Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
           VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 628 VVVDRFSKMAHFIPCHKSDDATHVA 652



 Score =  102 bits (254), Expect(3) = 4e-99
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
           + +DALS RY +LS LD K+FG E IKE YA + DF++    C +  T   +   +GF+F
Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVF 521

Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
           R NKLC+P  ++R  L++E+HGGGLMGHFGV KT  +  +HF+  K
Sbjct: 522 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 567


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  180 bits (456), Expect(3) = 7e-99
 Identities = 86/118 (72%), Positives = 97/118 (82%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTK LFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRT 1400

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L P P
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHP 1458



 Score =  128 bits (322), Expect(3) = 7e-99
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339



 Score =  103 bits (258), Expect(3) = 7e-99
 Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
            + +DALS RY +LS LD K+FG E IKE YA + DF+     CK+  T   +   +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVF 1208

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++R  L++E+HGGGLMGHFGV KT  +  +HF+  K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254



 Score =  206 bits (523), Expect = 7e-50
 Identities = 126/378 (33%), Positives = 189/378 (50%), Gaps = 36/378 (9%)
 Frame = +2

Query: 914  VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
            V SN        D MK VM  RF+ S++ +DL  KLQ L QG+ +VE YY+ ++  M+R 
Sbjct: 212  VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRC 271

Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273
             +  + +A M RF+ GLN+EI D++    Y  +  L H A K E++++          + 
Sbjct: 272  GLVENDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRASFRTNISA 331

Query: 1274 PWRPNWKDNK---------IPFKPKEDAKSKLSISIPKDRPETNPLI------------- 1387
                +W  +           P       +   + S P     T  +              
Sbjct: 332  GRASSWTSSNAAAPSTRAAAPSSSSNKLRPSTTNSTPCPSEPTRGVAATPSKTSSSVASS 391

Query: 1388 -KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM-------------SP 1525
             ++R I+C RC+G+ H+  + P+ RVM+V A+G   SAS  D E              +P
Sbjct: 392  GRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAP 451

Query: 1526 LEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSES 1705
             +D   +  +   H + LV +R LS Q +   ++ QR  +F  +C +K++ C +IID  S
Sbjct: 452  HQDEEHIGAEAAEHYESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGS 510

Query: 1706 CTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAP 1885
            C N+AS  +VEKL L  Q HP+ Y +Q LN  G+VKV + VRV F+IG Y D + CDV P
Sbjct: 511  CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVP 570

Query: 1886 MHAGHILLGRPWVRD*DA 1939
            M A  +LLGRPW  D D+
Sbjct: 571  MQACSMLLGRPWQFDKDS 588


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  183 bits (464), Expect(3) = 2e-98
 Identities = 87/118 (73%), Positives = 99/118 (83%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1237 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1296

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            ++T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L PLP
Sbjct: 1297 VSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1354



 Score =  128 bits (322), Expect(3) = 2e-98
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1210

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 1211 VVVDRFSKMAHFIPCHKSDDATHVA 1235



 Score = 99.8 bits (247), Expect(3) = 2e-98
 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
 Frame = -1

Query: 948  DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLFREN 772
            DALS RY +LS LD K+FG E IKE YA + DF++    CK+  T   +   +GF+FR N
Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107

Query: 771  KLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            KLC+P  ++   L++E+HGGGLMGHFGV KT  +  +H +  K
Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150



 Score =  164 bits (416), Expect = 2e-37
 Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 21/319 (6%)
 Frame = +2

Query: 914  VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
            V SN        D MK VM  RF+ S++ +DL  KLQ L QG+ +VE YY+ ++I M+R 
Sbjct: 212  VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271

Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIK--------XXXX 1249
             +  + +A M RF+  LN+EI D++    Y  +  L H A K E++++            
Sbjct: 272  GLVENDDAGMARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331

Query: 1250 XXXXXXNNPWRPNWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFK 1429
                  +N  RP+   N  P  P E  +  ++ +  K       L ++R I+C RC+G+ 
Sbjct: 332  AAPSSSSNKLRPS-TTNSTPC-PSEPTRG-VAATPSKSSSSVASLGRTRDIQCLRCKGYG 388

Query: 1430 HIASEGPNKRVMVVLANGDIESASSSDNEM-------------SPLEDCSDVEVKEPVHG 1570
            H+  + P+ RVM+V A+G   SAS  D E              +P +D   ++ +   H 
Sbjct: 389  HVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGEGDAPHQDEEHIKAEAAEHY 448

Query: 1571 DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNL 1750
            + LV +R LS Q +   ++ QR  +F  +C +K++ C +IID  SC N+AS  +VEKL L
Sbjct: 449  ESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLAL 507

Query: 1751 KLQKHPKLYKLQLLNDCGE 1807
              Q HP+ Y +Q LN  G+
Sbjct: 508  STQPHPQPYYIQWLNSSGK 526


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  184 bits (467), Expect(3) = 2e-98
 Identities = 88/118 (74%), Positives = 99/118 (83%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458



 Score =  126 bits (317), Expect(3) = 2e-98
 Identities = 57/84 (67%), Positives = 69/84 (82%)
 Frame = -2

Query: 650  KRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIFV 471
            +R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IFV
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315

Query: 470  VVDRFS*MVHFILSHKTDDASHVA 399
            VVDRFS M HFI  HK+DDA+HVA
Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVA 1339



 Score =  100 bits (249), Expect(3) = 2e-98
 Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
            + +DALS RY +LS LD K+FG E IKE YA + DF++    CK+  T   +   +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++   L++E+HGGGLMGHFGV K   +  +HF+  K
Sbjct: 1209 RANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254



 Score =  201 bits (510), Expect = 2e-48
 Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 38/380 (10%)
 Frame = +2

Query: 914  VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
            V SN        D MK VM  RF+ S++ +DL  KLQ L QG+ +VE YY+ ++I M+R 
Sbjct: 212  VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271

Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273
             +  + +A M RF+ GLN+EI D++    Y  +  L H A K E++++          + 
Sbjct: 272  GLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331

Query: 1274 PWRPNWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLI---------------------- 1387
                +W  +         A    S S  K RP T                          
Sbjct: 332  GCASSWTSSNAAAPSTRAAAP--SCSSNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVA 389

Query: 1388 ---KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM------------- 1519
               ++R I+C RC+G+ H+  + P+ RVM+V A+G     S  D E              
Sbjct: 390  SSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGD 449

Query: 1520 SPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDS 1699
            +P +D   +  +   H + LV +R LS Q +   ++ Q   +F  +C +K++ C +IID 
Sbjct: 450  APHQDEEHIRAEAAEHYESLVVQRVLSAQMER-AEQNQLHTLFQTKCVIKERSCHVIIDG 508

Query: 1700 ESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDV 1879
             SC N+AS  +VEKL L  Q HP+ Y +Q LN  G+VKV + VRV F+IG Y D + CDV
Sbjct: 509  GSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDV 568

Query: 1880 APMHAGHILLGRPWVRD*DA 1939
             PM A  +LLGRPW  D D+
Sbjct: 569  VPMQACSMLLGRPWQFDKDS 588


>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
          Length = 1176

 Score =  196 bits (498), Expect(3) = 2e-98
 Identities = 93/118 (78%), Positives = 104/118 (88%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFFKEIVRLHG+PR+IVSDRDAKFLS+F +TLW K+GTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 910  LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 969

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L TLLR ++KKN+K+WE CLPHVEFAYNR VHS T  SPFEIVY FN LTPL+L P+P
Sbjct: 970  LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLLPMP 1027



 Score =  128 bits (321), Expect(3) = 2e-98
 Identities = 56/85 (65%), Positives = 67/85 (78%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + + CG CI C+QAKS+V PHGLYTPLP+P  PW DISMDFVLGLP+ ++G+D +F
Sbjct: 824  MRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVF 883

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI   K DDA HVA
Sbjct: 884  VVVDRFSKMAHFIPCKKVDDACHVA 908



 Score = 86.7 bits (213), Expect(3) = 2e-98
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = -1

Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
           RHDGFLF+ NKLCVP C++RE LV ESH GGLMGHFGV KTL + QEHF+
Sbjct: 771 RHDGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFF 820



 Score =  268 bits (684), Expect = 1e-68
 Identities = 152/336 (45%), Positives = 211/336 (62%), Gaps = 10/336 (2%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
            EMK VM KR++ + Y + +  KLQGL QG++ VE YYK+M++ ++RANIE D E TM RF
Sbjct: 153  EMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEEDSEDTMARF 212

Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNW-----KD 1297
            + GLN EI DVVEL  YV +++LLH+A++VE+QIK          N  +  NW     K+
Sbjct: 213  LNGLNPEIRDVVELQEYVVLDDLLHRALRVEQQIKRRSATRRNSPNT-YNQNWANRSKKE 271

Query: 1298 NKIPFKPKEDAKSKLSISIPKDRPETNPLIKS-----RQIKCFRCQGFKHIASEGPNKRV 1462
                F+P   +    S +      + N    S     R IKCF+C G  HIASE P +R 
Sbjct: 272  GGNSFRPAATSPYGKSATPSVGGSKHNTSTSSSNTGTRNIKCFKCLGRGHIASECPTRRT 331

Query: 1463 MVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREH 1642
            M++ A+G+I    +S++E+S  E   +   +E + GD+L+ RR L  Q +   D+ QRE+
Sbjct: 332  MIMKADGEI----TSESEISEEEVEEEEYEEEAMQGDMLMVRRLLGNQMQ-PLDDNQREN 386

Query: 1643 IFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNK 1822
            IFH RC +  K+C LI+D  SCTNVAS+ LV KLNL+ + HP+ YKLQ L++  EVKV +
Sbjct: 387  IFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEVKVTQ 446

Query: 1823 QVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930
            QV V  +IG+Y D+V+CDV PM A H+LLGRPW  D
Sbjct: 447  QVEVCLTIGRYNDKVLCDVVPMEATHVLLGRPWQYD 482


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  183 bits (464), Expect(3) = 6e-98
 Identities = 84/118 (71%), Positives = 100/118 (84%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1372 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1431

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++K NIK WE+CLPH+EFAYNR +HS TK  PFEIVY F    P++L P+P
Sbjct: 1432 LSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1489



 Score =  125 bits (315), Expect(3) = 6e-98
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1345

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA++VA
Sbjct: 1346 VVVDRFSKMAHFIPCHKSDDAANVA 1370



 Score =  100 bits (249), Expect(3) = 6e-98
 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
 Frame = -1

Query: 963  DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGF 787
            D + +DALS RY +LS LD K+FG E IK+ Y  + DF++    C++  T   +  ++GF
Sbjct: 1178 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1237

Query: 786  LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            +FR NKLC+P  ++R  L++E+HGGGLMGHFGV K   V   HF+
Sbjct: 1238 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1282



 Score =  182 bits (463), Expect = 6e-43
 Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 36/361 (9%)
 Frame = +2

Query: 956  MKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRFI 1135
            +K+ M  R++  +Y +DL   LQ L QG  +VE YY++++  MIR  I  D EA + RF+
Sbjct: 259  LKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFM 318

Query: 1136 AGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP------ 1285
             GLN++I  ++E   Y  +  L H A K E++++          +    + W P      
Sbjct: 319  GGLNRDIQTILEYKDYXTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTS 378

Query: 1286 --------------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQG 1423
                          + +D +        AKS  S         T    ++ ++ C RC+G
Sbjct: 379  TRPPASAPPVSAASSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKG 438

Query: 1424 FKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG----------- 1570
              H A E P+KRVM++  +G  +SAS  D E   L    +  V +               
Sbjct: 439  GGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVADTAQETQYMAADYADR 498

Query: 1571 -DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLN 1747
             + LV +R LS+Q     ++ QR ++FH +  VK++   +IID  SC N+AS  +VEKL+
Sbjct: 499  YESLVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLS 557

Query: 1748 LKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVR 1927
            L  + HP  Y +Q  N+ G+VKV + VRV FSI  Y D V CDV PM A  +LLGRPW  
Sbjct: 558  LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 617

Query: 1928 D 1930
            D
Sbjct: 618  D 618


>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
          Length = 1191

 Score =  171 bits (434), Expect(3) = 1e-97
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1048 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1107

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L  +LR I+K  + +WED LP VEFAYNR  HS+T  +PFE+VY FN LTPL+L PLP
Sbjct: 1108 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1165



 Score =  126 bits (317), Expect(3) = 1e-97
 Identities = 61/102 (59%), Positives = 74/102 (72%)
 Frame = -1

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778
            + +DALS RYVL+STL +KL GF+QIK LYA + DF E +  CK      +   D FLF+
Sbjct: 832  VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 891

Query: 777  ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            ENKLCVPNC++RE  VRE+H GGLMGHFGV KTL +  EHFY
Sbjct: 892  ENKLCVPNCSLRELFVREAHYGGLMGHFGVPKTLEILSEHFY 933



 Score =  110 bits (275), Expect(3) = 1e-97
 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 25/111 (22%)
 Frame = -2

Query: 656  SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDIS----------------- 528
            SM++ ++++C  C+ C+QAKS+  PHGLYTPLP+ + PWIDIS                 
Sbjct: 936  SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVF 995

Query: 527  --------MDFVLGLPRNRHGRDLIFVVVDRFS*MVHFILSHKTDDASHVA 399
                    MDF+LGLPR ++G+D IFVVVDRFS M  FI   KT+DASHVA
Sbjct: 996  NTPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVA 1046



 Score =  256 bits (655), Expect = 3e-65
 Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 11/337 (3%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
            EMK VM KRFI S++ +DL  +LQ L QGSM+V+ Y+K M + MI+AN   ++EAT+ RF
Sbjct: 216  EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 275

Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288
            + GLN EIA+VVE+  YV ++EL+  ++KVEKQI+          NN WR  PN      
Sbjct: 276  LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 329

Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459
            W  ++ K P KP++D  K K+        P+++    S  I+C +C G  H+  E P++R
Sbjct: 330  WSTQEGKAPSKPQDDRGKGKVEEGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 387

Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639
             +++  NG+ ES  S   E        + +++ P  G + V RR ++I      DE QRE
Sbjct: 388  NILLRENGEYESEKSEGEEEEREGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 446

Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819
            ++FH RC +K K   +IID  SC NV S+ LV+KL +   K P  Y+LQ LNDCGEVKVN
Sbjct: 447  NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRPTPYRLQWLNDCGEVKVN 506

Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930
            KQ  + F++G+Y DE++CDV PM A H+LLGRPW  D
Sbjct: 507  KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYD 543


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  182 bits (461), Expect(3) = 1e-97
 Identities = 83/118 (70%), Positives = 100/118 (84%)
 Frame = -3

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1369 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1428

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++K N+K WE+CLPH+EFAYNR +HS TK  PFEIVY F    P++L P+P
Sbjct: 1429 LSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1486



 Score =  125 bits (315), Expect(3) = 1e-97
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = -2

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1342

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA++VA
Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVA 1367



 Score =  100 bits (249), Expect(3) = 1e-97
 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
 Frame = -1

Query: 963  DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGF 787
            D + +DALS RY +LS LD K+FG E IK+ Y  + DF++    C++  T   +  ++GF
Sbjct: 1175 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1234

Query: 786  LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            +FR NKLC+P  ++R  L++E+HGGGLMGHFGV K   V   HF+
Sbjct: 1235 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1279



 Score =  182 bits (461), Expect = 1e-42
 Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 36/361 (9%)
 Frame = +2

Query: 956  MKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRFI 1135
            +K+ M  R++  +Y +DL   LQ L QG  +VE YY++++  MIR  I  D EA + RF+
Sbjct: 256  LKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFM 315

Query: 1136 AGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP------ 1285
             GLN++I  ++E   Y  +  L H A K E++++          +    + W P      
Sbjct: 316  GGLNRDIQTILEYKDYNTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTS 375

Query: 1286 --------------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQG 1423
                          + +D +        AKS  S         T    ++ ++ C RC+G
Sbjct: 376  TRPPASAPPVSAANSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKG 435

Query: 1424 FKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG----------- 1570
              H A E P+KRVM++  +G  +SAS  D E   L    +  V +               
Sbjct: 436  GGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVXDTAQETQYMAADYADR 495

Query: 1571 -DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLN 1747
             + LV +R LS+Q     ++ QR ++FH +  VK++   +IID  SC N+AS  +VEKL+
Sbjct: 496  YESLVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLS 554

Query: 1748 LKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVR 1927
            L  + HP  Y +Q  N+ G+VKV + VRV FSI  Y D V CDV PM A  +LLGRPW  
Sbjct: 555  LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 614

Query: 1928 D 1930
            D
Sbjct: 615  D 615


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