BLASTX nr result
ID: Akebia25_contig00009547
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00009547
(2934 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 261 e-121
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 251 e-111
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 226 e-107
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 193 e-107
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 193 e-106
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 252 e-102
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 276 e-101
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 252 e-101
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 215 e-101
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 214 e-101
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 206 1e-99
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 184 3e-99
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 182 4e-99
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 206 7e-99
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 183 2e-98
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 201 2e-98
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 268 2e-98
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 183 6e-98
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 256 1e-97
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 182 1e-97
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 205 bits (522), Expect(4) = e-121
Identities = 96/119 (80%), Positives = 108/119 (90%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1504 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 1563
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+TLLR +IKKN+KTWEDCLPHVEFAYN +HSA+KFSPF+IVY FN TPL+L PLP+
Sbjct: 1564 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPL 1622
Score = 143 bits (361), Expect(4) = e-121
Identities = 64/104 (61%), Positives = 83/104 (79%)
Frame = -1
Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFL 784
D + +DALS RYVLLS+LDAKL GFE IK LYA + DF + Y+ C+K G Y+RHDGFL
Sbjct: 1311 DNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFL 1370
Query: 783 FRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
F +N+LC+PN ++RE +RE+HGGGLMGHFGV+KT+ V Q+HF+
Sbjct: 1371 FYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFH 1414
Score = 134 bits (338), Expect(4) = e-121
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
MKR ++RIC RC TC+QAK++ PHGLYTPLPIPS PW DISMDFV+GLPR R G+D IF
Sbjct: 1418 MKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIF 1477
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA H+A
Sbjct: 1478 VVVDRFSKMAHFIPCHKTDDAIHIA 1502
Score = 24.6 bits (52), Expect(4) = e-121
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 42 LSECVNLDGKRKAE 1
LSE V+LDGK+KAE
Sbjct: 1622 LSERVSLDGKKKAE 1635
Score = 261 bits (667), Expect = 1e-66
Identities = 145/302 (48%), Positives = 198/302 (65%), Gaps = 2/302 (0%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
+MK++M KRF+ SHYY++L+ +L+ LVQG+ +VE YYK+M+ M+RA+I+ D EA M+RF
Sbjct: 510 QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569
Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPF 1312
+ GLN++I D +E+ HYVE+EELLHKAI EKQ+K P KD + F
Sbjct: 570 MGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKP--SYHKDERSGF 627
Query: 1313 KP--KEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGD 1486
+ K K K+ K + + + ++R IK F+CQG H ASE NKR+M++ G+
Sbjct: 628 QKDYKPFIKPKVEDQDQKGKGKA-VMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGE 686
Query: 1487 IESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHV 1666
IES E S ED + P G+LLVT +ALS+ K D ++EQRE++FH C V
Sbjct: 687 IESEDEQLEESSSTED-----YEAPSKGELLVTMKALSVIAKTD-EQEQRENLFHSSCMV 740
Query: 1667 KDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSI 1846
DKVC LIID SCTNVAS +VEKL LK+ KHP+ YKLQ LN+ GE+ V++QV+VP SI
Sbjct: 741 NDKVCSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSI 800
Query: 1847 GK 1852
GK
Sbjct: 801 GK 802
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 192 bits (488), Expect(3) = e-111
Identities = 96/130 (73%), Positives = 106/130 (81%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF++IVRLHG+PR+IVSDRD KFLS F K LW KLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 905 LFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRT 964
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV* 35
L+TLLR II+KN+K WEDCLP EFAYNR VHS T FSPFEIVY FN LTPL+L PLPV
Sbjct: 965 LSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVN 1024
Query: 34 VCESRWKKKS 5
S +KK+
Sbjct: 1025 EMTSLDEKKN 1034
Score = 132 bits (332), Expect(3) = e-111
Identities = 64/102 (62%), Positives = 76/102 (74%)
Frame = -1
Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFRENK 769
DALS RY L+STL+AKL GFE +KELYA + DF Y C+K G ++R DG+LFREN+
Sbjct: 717 DALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENR 776
Query: 768 LCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
LCVPN +MRE LVRE+H GGLMGHFGV KTL V EH + K
Sbjct: 777 LCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPK 818
Score = 129 bits (325), Expect(3) = e-111
Identities = 61/85 (71%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
MKR ++R C RCIT R AKS+V PHGLYT L +PS PW+DISMDFVLGL R+R+GRD IF
Sbjct: 819 MKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIF 878
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA+H+A
Sbjct: 879 VVVDRFSKMTHFISCHKTDDATHIA 903
Score = 251 bits (642), Expect = 1e-63
Identities = 133/265 (50%), Positives = 173/265 (65%), Gaps = 4/265 (1%)
Frame = +2
Query: 1046 NVEYYYKKMKITMIRANIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVE 1225
NV+ Y+K+M+I MIRAN+E D+E TM RF+ GLN++IA+VVEL HYVE+E ++H AIKVE
Sbjct: 143 NVDDYHKEMEIAMIRANVEEDRETTMARFLNGLNRDIANVVELQHYVELENMVHMAIKVE 202
Query: 1226 KQIKXXXXXXXXXXNNP--WRPNW-KDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSR 1396
+Q+K + WRPN KD + FK K + + ++ + ++
Sbjct: 203 RQLKRKGTLSFQNPGSSASWRPNGRKDEGVVFKSKTKPPKRRDEAPNVNKGKNESQTRNH 262
Query: 1397 QIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEMSP-LEDCSDVEVKEPVHGD 1573
IKCF G HIAS+ PNKR M+ +G++E+ S D++ P LED D V+ PV G+
Sbjct: 263 DIKCFHYLGVGHIASQCPNKRTMIAHVDGEVETESEEDDDQMPSLEDSCDDNVEYPVEGE 322
Query: 1574 LLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLK 1753
LV RRALS Q K D E+QRE+IFH RCH+ +KVC +IID SC NVAST LVEKLNL
Sbjct: 323 SLVARRALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVASTTLVEKLNLP 382
Query: 1754 LQKHPKLYKLQLLNDCGEVKVNKQV 1828
KHP+ YKLQ LNDCGEVK K V
Sbjct: 383 TLKHPRPYKLQWLNDCGEVKEYKDV 407
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 193 bits (491), Expect(3) = e-107
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+
Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 1434
Score = 133 bits (335), Expect(3) = e-107
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1230 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 1289
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDASH+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKSDDASHIA 1314
Score = 112 bits (279), Expect(3) = e-107
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781
I +DALS + VLL+ L+ K+ G E IKELY+ +LDF E Y C Y HDGFLF
Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 1183
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K
Sbjct: 1184 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 1229
Score = 226 bits (576), Expect = 5e-56
Identities = 133/350 (38%), Positives = 193/350 (55%), Gaps = 24/350 (6%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
EMK M RF+ HY +DL+ KLQ L QGS++V+ YYK+M+ MIRAN+ D+E ++ RF
Sbjct: 213 EMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARF 272
Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXX--------NNPWRPN 1288
++GL++ I +VE Y + EL+H+A K E+Q++ + +
Sbjct: 273 MSGLHRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSR 332
Query: 1289 WKDNKIPFKPKEDA--------KSKLSISIPKDRPET--------NPLIKSRQIKCFRCQ 1420
N+ F S ++ P +R KS I+CF+C
Sbjct: 333 GSGNRGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCG 392
Query: 1421 GFKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALS 1600
G H+A E PN R +VV G+ ES S + E S E+ + ++ E G LV + LS
Sbjct: 393 GRGHVARECPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDICEFESGAALVVTQILS 452
Query: 1601 IQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYK 1780
+Q +D + QR ++F R V+DKV +IID SC N+AS +VEKL LKL KHP Y
Sbjct: 453 VQ-MSDAENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYH 511
Query: 1781 LQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930
+Q LN+ G +K+ ++V+VPF IG+Y+D + CDVAPM H+LLGRPW D
Sbjct: 512 VQWLNNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRPWQYD 561
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 193 bits (491), Expect(3) = e-107
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 402
Score = 133 bits (335), Expect(3) = e-107
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282
Score = 112 bits (279), Expect(3) = e-107
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781
I +DALS + VLL+ L+ K+ G E IKELY+ +LDF E Y C Y HDGFLF
Sbjct: 92 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 193 bits (490), Expect(3) = e-106
Identities = 91/119 (76%), Positives = 101/119 (84%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPL 402
Score = 133 bits (335), Expect(3) = e-106
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282
Score = 110 bits (275), Expect(3) = e-106
Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGT-YFRHDGFLF 781
I +DALS + VLL+ L+ K+ G E IKELY +LDF E Y C Y HDGFLF
Sbjct: 92 IVADALSRKNVLLNQLEVKVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 171 bits (434), Expect(3) = e-102
Identities = 83/118 (70%), Positives = 97/118 (82%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383
Score = 126 bits (317), Expect(3) = e-102
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778
+ +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134
Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176
Score = 124 bits (311), Expect(3) = e-102
Identities = 54/86 (62%), Positives = 70/86 (81%)
Frame = -2
Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSI 1238
Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399
FVVVDRFS M FI KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264
Score = 252 bits (644), Expect = 6e-64
Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 11/339 (3%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ RF
Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249
Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288
+ GLN EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN
Sbjct: 250 LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 303
Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459
W ++ K P KP++D K K+ P+++ S I+C +C G H+ E P++R
Sbjct: 304 WSTQEGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 361
Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639
+++ NG+ ES S E + +++ P G + V RR ++I DE QRE
Sbjct: 362 NILLRENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 420
Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819
++FH RC +K K +IID SC NV S+ LV+KL + K Y+LQ LNDCGEV+VN
Sbjct: 421 NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVN 480
Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1936
KQ + F++G+Y DE++CDV PM A H+LLGRPW D D
Sbjct: 481 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 209 bits (532), Expect(3) = e-101
Identities = 98/119 (82%), Positives = 109/119 (91%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 879 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
L+TLLR +IKKN+KTWEDCLPHVEFAYN VHSATKFSPF+IVY FN +TPL+L PLP+
Sbjct: 939 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPL 997
Score = 129 bits (323), Expect(3) = e-101
Identities = 59/85 (69%), Positives = 68/85 (80%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
MKR ++R+C RC TC+QAK++ PHGL TPLPIP PW DISMDFV+GLPR R G+D IF
Sbjct: 793 MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIF 852
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA H+A
Sbjct: 853 VVVDRFSKMAHFIPCHKTDDAMHIA 877
Score = 84.0 bits (206), Expect(3) = e-101
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = -1
Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
RH+GFLF +N+LC+PN ++RE +RE+HGGGLMGHFGV+KTL V Q+HF+
Sbjct: 740 RHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFH 789
Score = 276 bits (705), Expect = 5e-71
Identities = 142/327 (43%), Positives = 211/327 (64%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
+++K++M +RF+ SHY+++L+ +L+ LVQG+ VE Y+K+M+ M+RA+++ + EATM+R
Sbjct: 130 NQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSR 189
Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309
F+ GLN++I D E+ HY +EEL HKA+ EKQIK + P ++ K
Sbjct: 190 FMGGLNRDILDRFEVIHYENLEELFHKAVMFEKQIKRRSAKPSYNSSKP--SYQREEKSG 247
Query: 1310 FKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDI 1489
F+ + K + + + + ++R +KCF+C G H ASE NKR+M++ +G++
Sbjct: 248 FQKEYKPFVKPKVEEISSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEV 307
Query: 1490 ESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVK 1669
ES E SDVE E G+LLVT R LS+ K + ++ QRE++FH RC +K
Sbjct: 308 ESEDEKPEE-------SDVE--EAPKGELLVTMRVLSVLNKAE-EQAQRENLFHTRCLIK 357
Query: 1670 DKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIG 1849
KVC LIID SCTNVAS +V+KL L+ HPK YKLQ LN+ GE+ V +QV+VP +IG
Sbjct: 358 GKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAVTRQVQVPLAIG 417
Query: 1850 KYVDEVICDVAPMHAGHILLGRPWVRD 1930
KY DE++CD+ P+ A H+LLGRPW D
Sbjct: 418 KYEDEILCDILPLEASHVLLGRPWQSD 444
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 171 bits (434), Expect(3) = e-101
Identities = 83/118 (70%), Positives = 97/118 (82%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383
Score = 126 bits (317), Expect(3) = e-101
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778
+ +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134
Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176
Score = 123 bits (308), Expect(3) = e-101
Identities = 54/86 (62%), Positives = 70/86 (81%)
Frame = -2
Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSI 1238
Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399
FVVVDRFS M FI KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264
Score = 252 bits (644), Expect = 6e-64
Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 11/339 (3%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ RF
Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249
Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288
+ GLN EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN
Sbjct: 250 LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 303
Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459
W ++ K P KP++D K K+ P+++ S I+C +C G H+ E P++R
Sbjct: 304 WSTQEGKAPSKPQDDRGKGKVEKGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 361
Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639
+++ NG+ ES S E + +++ P G + V RR ++I DE QRE
Sbjct: 362 NILLRENGEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 420
Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819
++FH RC +K K +IID SC NV S+ LV+KL + K Y+LQ LNDCGEV+VN
Sbjct: 421 NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVN 480
Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*D 1936
KQ + F++G+Y DE++CDV PM A H+LLGRPW D D
Sbjct: 481 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRD 519
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 188 bits (478), Expect(3) = e-101
Identities = 88/118 (74%), Positives = 101/118 (85%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRDAKFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1375
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WEDCLPH+EFAYNR +HS TK PF+IVY P++L PLP
Sbjct: 1376 LSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1433
Score = 130 bits (327), Expect(3) = e-101
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + R+ RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR R GRD +F
Sbjct: 1230 MRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVF 1289
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDA+H+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKTDDATHIA 1314
Score = 102 bits (253), Expect(3) = e-101
Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTN-GTYFRHDGFLF 781
I +DALS RY LL+ LD K+FG E IK+ Y + DF++ CK Y DGF+F
Sbjct: 1124 IIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVF 1183
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ K
Sbjct: 1184 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPK 1229
Score = 215 bits (548), Expect = 8e-53
Identities = 128/365 (35%), Positives = 193/365 (52%), Gaps = 36/365 (9%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
D +K VM RF+ S+Y +D+ KLQ L QG+ +VE YY+++++ M+R NIE +E+ M R
Sbjct: 216 DALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMAR 275
Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRPNWKD 1297
F+ GLN+EI D++ Y + L H A K E++++ + PW+
Sbjct: 276 FLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTTT 335
Query: 1298 NKI-------------------PFKPKEDAKSKLSISIPKDRPETNPLI---KSRQIKCF 1411
+ KP+ + + + S K + + ++R + C+
Sbjct: 336 SMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCY 395
Query: 1412 RCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV--------- 1564
RC+G+ H+ + PN+RV+VV +G SAS D L D KEP
Sbjct: 396 RCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDA 455
Query: 1565 -HGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEK 1741
H + L+ +R LS Q + ++ QR +F +C +K++ C LIID SC N+AS+ +VEK
Sbjct: 456 EHYESLIVQRVLSAQMEK-AEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEK 514
Query: 1742 LNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPW 1921
L L + HP Y +Q LN+ G+VKV K VR+ F+IG Y D V CDV PM A +ILLGRPW
Sbjct: 515 LALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPW 574
Query: 1922 VRD*D 1936
D D
Sbjct: 575 QFDSD 579
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 185 bits (470), Expect(3) = e-101
Identities = 86/118 (72%), Positives = 100/118 (84%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1313 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1372
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPH+EFAYNR +HS TK PF+IVY P++L PLP
Sbjct: 1373 LSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1430
Score = 131 bits (330), Expect(3) = e-101
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1286
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HKTDDASH+A
Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIA 1311
Score = 102 bits (255), Expect(3) = e-101
Identities = 51/103 (49%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
I +DALS RY LL+ LD K+FG E IK+ YA + DF + CK T + +DGF+F
Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1180
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+
Sbjct: 1181 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223
Score = 214 bits (544), Expect = 2e-52
Identities = 123/357 (34%), Positives = 193/357 (54%), Gaps = 27/357 (7%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
D +K VM RF+ S+Y +DL +LQ L QG+ +VE YY+++++ ++R N+E ++A M R
Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMAR 281
Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309
F+ GLN+EI D+V+ Y M L H A K E++++ + +W+ P
Sbjct: 282 FLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTP 341
Query: 1310 FKPKEDAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHI 1435
+ + S K + + P + + + R ++C RC+GF H+
Sbjct: 342 PAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHV 401
Query: 1436 ASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTR 1588
+ P+KRV+VV +G+ SAS D++ L + + P H + L+ +
Sbjct: 402 QRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQ 461
Query: 1589 RALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHP 1768
R LS Q + ++ QR +F +C VK++ C +IID SC N+AS+ +VEKL L + HP
Sbjct: 462 RVLSAQMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHP 520
Query: 1769 KLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1939
Y +Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW D D+
Sbjct: 521 HPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 577
Score = 105 bits (262), Expect(2) = 1e-32
Identities = 51/112 (45%), Positives = 73/112 (65%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
L+F IV LHG+P+ IVSDR+++F S+F K L +LGT+L FST HPQ DGQTE +N+
Sbjct: 2135 LYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQI 2194
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPL 59
L +L + KTW+ LP+ EF+YN ++ + +P+E +Y TPL
Sbjct: 2195 LEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 2246
Score = 64.3 bits (155), Expect(2) = 1e-32
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 656 SMKRKIKRICGRCITCRQAKSQ-VHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDL 480
SMKR+I C C++ K++ P GL PL +P W +I MDF+ GLP+ + G D
Sbjct: 2047 SMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDS 2106
Query: 479 IFVVVDRFS*MVHFI 435
I+VVVDR + + FI
Sbjct: 2107 IWVVVDRLTKVARFI 2121
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 184 bits (467), Expect(3) = 1e-99
Identities = 88/118 (74%), Positives = 99/118 (83%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458
Score = 126 bits (316), Expect(3) = 1e-99
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AK +++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339
Score = 104 bits (260), Expect(3) = 1e-99
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF++ CK+ T + +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254
Score = 206 bits (525), Expect = 4e-50
Identities = 126/378 (33%), Positives = 189/378 (50%), Gaps = 36/378 (9%)
Frame = +2
Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++ M+R
Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRC 271
Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273
+ + +A M RF+ GLN+EI D++ Y + L H A K E++++ +
Sbjct: 272 GLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331
Query: 1274 PWRPNWKDNKI---------PFKPKEDAKSKLSISIPKDRPETNPLI------------- 1387
+W + + P + + S P T +
Sbjct: 332 GRASSWTSSNVAAPSTRAAAPSSSNNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASS 391
Query: 1388 -KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM-------------SP 1525
++R I+C RC+G+ H+ + P+ RVM+V A+G SAS D E +P
Sbjct: 392 GRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAP 451
Query: 1526 LEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSES 1705
+D + + H + LV +R LS Q + ++ QR +F +C +K++ C +IID S
Sbjct: 452 HQDEEHIGAEAAEHYESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDRGS 510
Query: 1706 CTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAP 1885
C N+AS +VEKL L Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV P
Sbjct: 511 CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVP 570
Query: 1886 MHAGHILLGRPWVRD*DA 1939
M A I LGRPW D D+
Sbjct: 571 MQACSIFLGRPWQFDKDS 588
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 180 bits (456), Expect(3) = 3e-99
Identities = 84/118 (71%), Positives = 98/118 (83%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 1292 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRT 1351
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPH+EFA NR +HS TK PF+IVY P++L PLP
Sbjct: 1352 LSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLP 1409
Score = 133 bits (334), Expect(3) = 3e-99
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1206 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1265
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS MVHFI HKTDDASH+A
Sbjct: 1266 VVVDRFSKMVHFIPCHKTDDASHIA 1290
Score = 100 bits (250), Expect(3) = 3e-99
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
I ++ALS RY LL+ LD K+FG E IK+ YA + DF + CK T + +DGF+F
Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1159
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+
Sbjct: 1160 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202
Score = 184 bits (468), Expect = 2e-43
Identities = 116/357 (32%), Positives = 176/357 (49%), Gaps = 27/357 (7%)
Frame = +2
Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTR 1129
D +K VM RF+ S+Y +DL +LQ L Q E ++A M R
Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQ---------------------EETEDAAMAR 260
Query: 1130 FIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIP 1309
F+ GLN+EI D+V+ Y M L H A K E++++ + +W+ P
Sbjct: 261 FLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTP 320
Query: 1310 FKPKEDAKS---------------KLSISIPKDRPETNPLIKS---RQIKCFRCQGFKHI 1435
+ + S K + + P + + + R ++C RC+GF H+
Sbjct: 321 LAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHV 380
Query: 1436 ASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPV---------HGDLLVTR 1588
+ P+KRV+VV +G+ SAS D++ L + + P H + L+ +
Sbjct: 381 QRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQ 440
Query: 1589 RALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHP 1768
R LS Q + ++ QR +F +C VK++ C +IID SC N+AS+ +VEKL L + HP
Sbjct: 441 RVLSAQMEK-AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHP 499
Query: 1769 KLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD*DA 1939
Y +Q LN+ G+ KV K V + F+IG Y D V CDV PM A +ILLGRPW D D+
Sbjct: 500 HSYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDS 556
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 182 bits (462), Expect(3) = 4e-99
Identities = 87/118 (73%), Positives = 98/118 (83%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 654 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 713
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYN HS TK PFEIVY P++L PLP
Sbjct: 714 LSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 771
Score = 128 bits (322), Expect(3) = 4e-99
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 568 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 627
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 628 VVVDRFSKMAHFIPCHKSDDATHVA 652
Score = 102 bits (254), Expect(3) = 4e-99
Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF++ C + T + +GF+F
Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVF 521
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K
Sbjct: 522 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 567
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 180 bits (456), Expect(3) = 7e-99
Identities = 86/118 (72%), Positives = 97/118 (82%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTK LFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRT 1400
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L P P
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHP 1458
Score = 128 bits (322), Expect(3) = 7e-99
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339
Score = 103 bits (258), Expect(3) = 7e-99
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF+ CK+ T + +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVF 1208
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254
Score = 206 bits (523), Expect = 7e-50
Identities = 126/378 (33%), Positives = 189/378 (50%), Gaps = 36/378 (9%)
Frame = +2
Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++ M+R
Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRC 271
Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273
+ + +A M RF+ GLN+EI D++ Y + L H A K E++++ +
Sbjct: 272 GLVENDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRASFRTNISA 331
Query: 1274 PWRPNWKDNK---------IPFKPKEDAKSKLSISIPKDRPETNPLI------------- 1387
+W + P + + S P T +
Sbjct: 332 GRASSWTSSNAAAPSTRAAAPSSSSNKLRPSTTNSTPCPSEPTRGVAATPSKTSSSVASS 391
Query: 1388 -KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM-------------SP 1525
++R I+C RC+G+ H+ + P+ RVM+V A+G SAS D E +P
Sbjct: 392 GRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAP 451
Query: 1526 LEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSES 1705
+D + + H + LV +R LS Q + ++ QR +F +C +K++ C +IID S
Sbjct: 452 HQDEEHIGAEAAEHYESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGS 510
Query: 1706 CTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAP 1885
C N+AS +VEKL L Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV P
Sbjct: 511 CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVP 570
Query: 1886 MHAGHILLGRPWVRD*DA 1939
M A +LLGRPW D D+
Sbjct: 571 MQACSMLLGRPWQFDKDS 588
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 183 bits (464), Expect(3) = 2e-98
Identities = 87/118 (73%), Positives = 99/118 (83%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1237 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1296
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
++T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP
Sbjct: 1297 VSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1354
Score = 128 bits (322), Expect(3) = 2e-98
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1210
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA+HVA
Sbjct: 1211 VVVDRFSKMAHFIPCHKSDDATHVA 1235
Score = 99.8 bits (247), Expect(3) = 2e-98
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -1
Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLFREN 772
DALS RY +LS LD K+FG E IKE YA + DF++ CK+ T + +GF+FR N
Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107
Query: 771 KLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
KLC+P ++ L++E+HGGGLMGHFGV KT + +H + K
Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150
Score = 164 bits (416), Expect = 2e-37
Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 21/319 (6%)
Frame = +2
Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R
Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271
Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIK--------XXXX 1249
+ + +A M RF+ LN+EI D++ Y + L H A K E++++
Sbjct: 272 GLVENDDAGMARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331
Query: 1250 XXXXXXNNPWRPNWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFK 1429
+N RP+ N P P E + ++ + K L ++R I+C RC+G+
Sbjct: 332 AAPSSSSNKLRPS-TTNSTPC-PSEPTRG-VAATPSKSSSSVASLGRTRDIQCLRCKGYG 388
Query: 1430 HIASEGPNKRVMVVLANGDIESASSSDNEM-------------SPLEDCSDVEVKEPVHG 1570
H+ + P+ RVM+V A+G SAS D E +P +D ++ + H
Sbjct: 389 HVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGEGDAPHQDEEHIKAEAAEHY 448
Query: 1571 DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNL 1750
+ LV +R LS Q + ++ QR +F +C +K++ C +IID SC N+AS +VEKL L
Sbjct: 449 ESLVVQRVLSAQMER-AEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLAL 507
Query: 1751 KLQKHPKLYKLQLLNDCGE 1807
Q HP+ Y +Q LN G+
Sbjct: 508 STQPHPQPYYIQWLNSSGK 526
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 184 bits (467), Expect(3) = 2e-98
Identities = 88/118 (74%), Positives = 99/118 (83%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458
Score = 126 bits (317), Expect(3) = 2e-98
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = -2
Query: 650 KRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIFV 471
+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IFV
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315
Query: 470 VVDRFS*MVHFILSHKTDDASHVA 399
VVDRFS M HFI HK+DDA+HVA
Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVA 1339
Score = 100 bits (249), Expect(3) = 2e-98
Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGFLF 781
+ +DALS RY +LS LD K+FG E IKE YA + DF++ CK+ T + +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208
Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
R NKLC+P ++ L++E+HGGGLMGHFGV K + +HF+ K
Sbjct: 1209 RANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254
Score = 201 bits (510), Expect = 2e-48
Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 38/380 (10%)
Frame = +2
Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R
Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271
Query: 1094 NIEGDKEATMTRFIAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNN 1273
+ + +A M RF+ GLN+EI D++ Y + L H A K E++++ +
Sbjct: 272 GLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISA 331
Query: 1274 PWRPNWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLI---------------------- 1387
+W + A S S K RP T
Sbjct: 332 GCASSWTSSNAAAPSTRAAAP--SCSSNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVA 389
Query: 1388 ---KSRQIKCFRCQGFKHIASEGPNKRVMVVLANGDIESASSSDNEM------------- 1519
++R I+C RC+G+ H+ + P+ RVM+V A+G S D E
Sbjct: 390 SSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGD 449
Query: 1520 SPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDS 1699
+P +D + + H + LV +R LS Q + ++ Q +F +C +K++ C +IID
Sbjct: 450 APHQDEEHIRAEAAEHYESLVVQRVLSAQMER-AEQNQLHTLFQTKCVIKERSCHVIIDG 508
Query: 1700 ESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDV 1879
SC N+AS +VEKL L Q HP+ Y +Q LN G+VKV + VRV F+IG Y D + CDV
Sbjct: 509 GSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDV 568
Query: 1880 APMHAGHILLGRPWVRD*DA 1939
PM A +LLGRPW D D+
Sbjct: 569 VPMQACSMLLGRPWQFDKDS 588
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 196 bits (498), Expect(3) = 2e-98
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFFKEIVRLHG+PR+IVSDRDAKFLS+F +TLW K+GTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 910 LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 969
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L TLLR ++KKN+K+WE CLPHVEFAYNR VHS T SPFEIVY FN LTPL+L P+P
Sbjct: 970 LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLLPMP 1027
Score = 128 bits (321), Expect(3) = 2e-98
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R + + CG CI C+QAKS+V PHGLYTPLP+P PW DISMDFVLGLP+ ++G+D +F
Sbjct: 824 MRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVF 883
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI K DDA HVA
Sbjct: 884 VVVDRFSKMAHFIPCKKVDDACHVA 908
Score = 86.7 bits (213), Expect(3) = 2e-98
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = -1
Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
RHDGFLF+ NKLCVP C++RE LV ESH GGLMGHFGV KTL + QEHF+
Sbjct: 771 RHDGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFF 820
Score = 268 bits (684), Expect = 1e-68
Identities = 152/336 (45%), Positives = 211/336 (62%), Gaps = 10/336 (2%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
EMK VM KR++ + Y + + KLQGL QG++ VE YYK+M++ ++RANIE D E TM RF
Sbjct: 153 EMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEEDSEDTMARF 212
Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWRPNW-----KD 1297
+ GLN EI DVVEL YV +++LLH+A++VE+QIK N + NW K+
Sbjct: 213 LNGLNPEIRDVVELQEYVVLDDLLHRALRVEQQIKRRSATRRNSPNT-YNQNWANRSKKE 271
Query: 1298 NKIPFKPKEDAKSKLSISIPKDRPETNPLIKS-----RQIKCFRCQGFKHIASEGPNKRV 1462
F+P + S + + N S R IKCF+C G HIASE P +R
Sbjct: 272 GGNSFRPAATSPYGKSATPSVGGSKHNTSTSSSNTGTRNIKCFKCLGRGHIASECPTRRT 331
Query: 1463 MVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQREH 1642
M++ A+G+I +S++E+S E + +E + GD+L+ RR L Q + D+ QRE+
Sbjct: 332 MIMKADGEI----TSESEISEEEVEEEEYEEEAMQGDMLMVRRLLGNQMQ-PLDDNQREN 386
Query: 1643 IFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVNK 1822
IFH RC + K+C LI+D SCTNVAS+ LV KLNL+ + HP+ YKLQ L++ EVKV +
Sbjct: 387 IFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEVKVTQ 446
Query: 1823 QVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930
QV V +IG+Y D+V+CDV PM A H+LLGRPW D
Sbjct: 447 QVEVCLTIGRYNDKVLCDVVPMEATHVLLGRPWQYD 482
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 183 bits (464), Expect(3) = 6e-98
Identities = 84/118 (71%), Positives = 100/118 (84%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1372 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1431
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++K NIK WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P
Sbjct: 1432 LSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1489
Score = 125 bits (315), Expect(3) = 6e-98
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1345
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA++VA
Sbjct: 1346 VVVDRFSKMAHFIPCHKSDDAANVA 1370
Score = 100 bits (249), Expect(3) = 6e-98
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Frame = -1
Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGF 787
D + +DALS RY +LS LD K+FG E IK+ Y + DF++ C++ T + ++GF
Sbjct: 1178 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1237
Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
+FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+
Sbjct: 1238 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1282
Score = 182 bits (463), Expect = 6e-43
Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 36/361 (9%)
Frame = +2
Query: 956 MKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRFI 1135
+K+ M R++ +Y +DL LQ L QG +VE YY++++ MIR I D EA + RF+
Sbjct: 259 LKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFM 318
Query: 1136 AGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP------ 1285
GLN++I ++E Y + L H A K E++++ + + W P
Sbjct: 319 GGLNRDIQTILEYKDYXTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTS 378
Query: 1286 --------------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQG 1423
+ +D + AKS S T ++ ++ C RC+G
Sbjct: 379 TRPPASAPPVSAASSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKG 438
Query: 1424 FKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG----------- 1570
H A E P+KRVM++ +G +SAS D E L + V +
Sbjct: 439 GGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVADTAQETQYMAADYADR 498
Query: 1571 -DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLN 1747
+ LV +R LS+Q ++ QR ++FH + VK++ +IID SC N+AS +VEKL+
Sbjct: 499 YESLVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLS 557
Query: 1748 LKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVR 1927
L + HP Y +Q N+ G+VKV + VRV FSI Y D V CDV PM A +LLGRPW
Sbjct: 558 LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 617
Query: 1928 D 1930
D
Sbjct: 618 D 618
>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
Length = 1191
Score = 171 bits (434), Expect(3) = 1e-97
Identities = 83/118 (70%), Positives = 97/118 (82%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1048 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1107
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP
Sbjct: 1108 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1165
Score = 126 bits (317), Expect(3) = 1e-97
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = -1
Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKSTNGTYFRHDGFLFR 778
+ +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+
Sbjct: 832 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 891
Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY
Sbjct: 892 ENKLCVPNCSLRELFVREAHYGGLMGHFGVPKTLEILSEHFY 933
Score = 110 bits (275), Expect(3) = 1e-97
Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 25/111 (22%)
Frame = -2
Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDIS----------------- 528
SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDIS
Sbjct: 936 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVF 995
Query: 527 --------MDFVLGLPRNRHGRDLIFVVVDRFS*MVHFILSHKTDDASHVA 399
MDF+LGLPR ++G+D IFVVVDRFS M FI KT+DASHVA
Sbjct: 996 NTPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVA 1046
Score = 256 bits (655), Expect = 3e-65
Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 11/337 (3%)
Frame = +2
Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRF 1132
EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ RF
Sbjct: 216 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 275
Query: 1133 IAGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXNNPWR--PN------ 1288
+ GLN EIA+VVE+ YV ++EL+ ++KVEKQI+ NN WR PN
Sbjct: 276 LNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQ------NNSWRSRPNTISKKP 329
Query: 1289 W--KDNKIPFKPKED-AKSKLSISIPKDRPETNPLIKSRQIKCFRCQGFKHIASEGPNKR 1459
W ++ K P KP++D K K+ P+++ S I+C +C G H+ E P++R
Sbjct: 330 WSTQEGKAPSKPQDDRGKGKVEEGGKTFNPKSSK--PSSSIQCHKCHGRGHMMHECPSRR 387
Query: 1460 VMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHGDLLVTRRALSIQPKNDGDEEQRE 1639
+++ NG+ ES S E + +++ P G + V RR ++I DE QRE
Sbjct: 388 NILLRENGEYESEKSEGEEEEREGVSEEDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRE 446
Query: 1640 HIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLNLKLQKHPKLYKLQLLNDCGEVKVN 1819
++FH RC +K K +IID SC NV S+ LV+KL + K P Y+LQ LNDCGEVKVN
Sbjct: 447 NLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRPTPYRLQWLNDCGEVKVN 506
Query: 1820 KQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVRD 1930
KQ + F++G+Y DE++CDV PM A H+LLGRPW D
Sbjct: 507 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYD 543
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 182 bits (461), Expect(3) = 1e-97
Identities = 83/118 (70%), Positives = 100/118 (84%)
Frame = -3
Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1369 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1428
Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
L+T+LR ++K N+K WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P
Sbjct: 1429 LSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1486
Score = 125 bits (315), Expect(3) = 1e-97
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = -2
Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1342
Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
VVVDRFS M HFI HK+DDA++VA
Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVA 1367
Score = 100 bits (249), Expect(3) = 1e-97
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Frame = -1
Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFREEYTLCKKS-TNGTYFRHDGF 787
D + +DALS RY +LS LD K+FG E IK+ Y + DF++ C++ T + ++GF
Sbjct: 1175 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1234
Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
+FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+
Sbjct: 1235 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1279
Score = 182 bits (461), Expect = 1e-42
Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 36/361 (9%)
Frame = +2
Query: 956 MKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMTRFI 1135
+K+ M R++ +Y +DL LQ L QG +VE YY++++ MIR I D EA + RF+
Sbjct: 256 LKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFM 315
Query: 1136 AGLNKEIADVVELHHYVEMEELLHKAIKVEKQIKXXXXXXXXXXN----NPWRP------ 1285
GLN++I ++E Y + L H A K E++++ + + W P
Sbjct: 316 GGLNRDIQTILEYKDYNTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTS 375
Query: 1286 --------------NWKDNKIPFKPKEDAKSKLSISIPKDRPETNPLIKSRQIKCFRCQG 1423
+ +D + AKS S T ++ ++ C RC+G
Sbjct: 376 TRPPASAPPVSAANSTRDTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKG 435
Query: 1424 FKHIASEGPNKRVMVVLANGDIESASSSDNEMSPLEDCSDVEVKEPVHG----------- 1570
H A E P+KRVM++ +G +SAS D E L + V +
Sbjct: 436 GGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVXDTAQETQYMAADYADR 495
Query: 1571 -DLLVTRRALSIQPKNDGDEEQREHIFHPRCHVKDKVCILIIDSESCTNVASTLLVEKLN 1747
+ LV +R LS+Q ++ QR ++FH + VK++ +IID SC N+AS +VEKL+
Sbjct: 496 YESLVAQRVLSVQV-TQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLS 554
Query: 1748 LKLQKHPKLYKLQLLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWVR 1927
L + HP Y +Q N+ G+VKV + VRV FSI Y D V CDV PM A +LLGRPW
Sbjct: 555 LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 614
Query: 1928 D 1930
D
Sbjct: 615 D 615