BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00009497
         (3174 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...  1483   0.0  
ref|XP_006341743.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...  1422   0.0  
ref|XP_007048480.1| Topoisomerase 3alpha isoform 1 [Theobroma ca...  1418   0.0  
ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...  1415   0.0  
ref|XP_004239191.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...  1396   0.0  
ref|XP_004289288.1| PREDICTED: DNA topoisomerase 3-alpha-like [F...  1394   0.0  
ref|XP_006465105.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...  1382   0.0  
ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Popu...  1378   0.0  
gb|EYU20574.1| hypothetical protein MIMGU_mgv1a000984mg [Mimulus...  1370   0.0  
ref|XP_007048481.1| Topoisomerase 3alpha isoform 2, partial [The...  1365   0.0  
ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...  1360   0.0  
ref|XP_006829322.1| hypothetical protein AMTR_s00202p00033660 [A...  1319   0.0  
ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ric...  1310   0.0  
ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [O...  1306   0.0  
ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group] g...  1301   0.0  
ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha isoform...  1288   0.0  
ref|XP_006581777.1| PREDICTED: DNA topoisomerase 3-alpha isoform...  1282   0.0  
ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana] gi|...  1281   0.0  
ref|XP_004985595.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...  1278   0.0  
ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab...  1276   0.0  

>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score = 1483 bits (3840), Expect = 0.0
 Identities = 712/918 (77%), Positives = 777/918 (84%), Gaps = 3/918 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVTGH 2834
            ++VLNVAEKPSVAKAV+ ILSR+QGLRVREGRSRYNK+FEF YSIRGQ C M+VTSV GH
Sbjct: 1    MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGH 60

Query: 2833 LMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCDRE 2654
            LMELEFEDR+RKWHSCDPA LYHA VRK VP+DKL+IKRTLEEE+R CQWLVLWLDCDRE
Sbjct: 61   LMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDRE 120

Query: 2653 GENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQEIDL 2474
            GENIAFEV+EVC+ VN ++++WRARFSALIDREIHESVQNL+RPNQLFADAVD RQEIDL
Sbjct: 121  GENIAFEVLEVCAQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDL 180

Query: 2473 RIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFW 2294
            RIGASFTRFQTMLL+DAFV+DF  DDR+LVLSYGPCQFPTLGFVVERYWEIQ+HEPEEFW
Sbjct: 181  RIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240

Query: 2293 MIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPHPLN 2114
             I+CSH S+EG +TFNWMR H+FDYTCAVIIYEMC+QEPTATVTKVR Q+KLKYPPHPLN
Sbjct: 241  TINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLN 300

Query: 2113 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGHPE 1934
            TIELEKRASRYF MSSEHTMKVAEDLYQ GFISYPRTETD FS RTDLH IVQEQ GHP 
Sbjct: 301  TIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHGIVQEQLGHPI 360

Query: 1933 WGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRHFL 1754
            WGSYAQ+LLDPG GLWRNPS+GGHDDKAHPPIHPTKFS GESGWSQDH RLYELVVRHFL
Sbjct: 361  WGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQRLYELVVRHFL 420

Query: 1753 ACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQFTP 1574
            ACVSQPAVG ET VEIDIAGE FS+SGRVIIAKNYLDVYRFESWGGSMIP Y+FGQQF P
Sbjct: 421  ACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMIPTYVFGQQFIP 480

Query: 1573 TTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFSPT 1394
            TTLTLDSGVTR           +CMDKAGIGTDATMHDHIKKLLDRFYATKD+NTRFSPT
Sbjct: 481  TTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPT 540

Query: 1393 NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFLDARV 1214
            NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVS GTKR++EVL TCL+QMKACFLDAR+
Sbjct: 541  NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARL 600

Query: 1213 NRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGCLGFP 1034
            N+VKLLEAMA+FF+RSNR  GDEQ  VGD+VR C  C ESDM L+++PDG FMVGCLG+P
Sbjct: 601  NKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYP 660

Query: 1033 QCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGGCDET 854
            QCRNVVWLPGS SEAA+TT  CN CTPGPV+ IQ KFR++EIPPNY+ DHLGC+ GCDE 
Sbjct: 661  QCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEI 720

Query: 853  LRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSNDCXXXX 674
            LRQL EIC TGSR      +ARGRG   SS+NA R +TRQ+ACIHC QTGHSSNDC    
Sbjct: 721  LRQLTEICGTGSR-----ISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRV 775

Query: 673  XXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFFVWEDS 494
                          SGE+SIPCN+CGTPC +RTANT NN+GRKFYSCQ +ECNFFVWEDS
Sbjct: 776  PRSRNSQSHRTNMPSGESSIPCNVCGTPCILRTANTENNRGRKFYSCQSQECNFFVWEDS 835

Query: 493  INNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ--NTIDAMFVSATGDPISG-R 323
            +N+S+ G                                   T D  FVSATGDP+SG R
Sbjct: 836  LNSSSGGRSAQPATARSSASNPSRRGGRGRGDRGRGRQSGARTSDTTFVSATGDPVSGRR 895

Query: 322  CYVCGDPSHFANVCPNRG 269
            C+VCGDPSHFANVCPNRG
Sbjct: 896  CFVCGDPSHFANVCPNRG 913


>ref|XP_006341743.1| PREDICTED: DNA topoisomerase 3-alpha-like [Solanum tuberosum]
          Length = 915

 Score = 1422 bits (3681), Expect = 0.0
 Identities = 684/922 (74%), Positives = 762/922 (82%), Gaps = 3/922 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQ--GLRVREGRSRYNKIFEFEYSIRGQRCNMLV 2852
            GGR IRVLNVAEKPSVAKAVSGILS++Q  G+RVR+GRSRYNKIFEF Y+IR Q C ML 
Sbjct: 5    GGRVIRVLNVAEKPSVAKAVSGILSKNQPGGMRVRDGRSRYNKIFEFNYTIRNQPCQMLF 64

Query: 2851 TSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLW 2672
            TSVTGHLMELEF++RYRKWHSCDP DLY+A VRK VP+DKL+IKRTLE E+R CQW+VLW
Sbjct: 65   TSVTGHLMELEFDERYRKWHSCDPLDLYNAPVRKFVPEDKLDIKRTLEAEARSCQWIVLW 124

Query: 2671 LDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDA 2492
            LDCDREGENIAFEV++VC   N NLN+WRARFSALIDREIH+SVQ L++PNQLF+DAVD 
Sbjct: 125  LDCDREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDV 184

Query: 2491 RQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAH 2312
            RQEIDLRIGASFTRFQTMLL+ AFV+DF  DDR++VLSYGPCQFPTLGFVVERYWEIQAH
Sbjct: 185  RQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNIVLSYGPCQFPTLGFVVERYWEIQAH 244

Query: 2311 EPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKY 2132
            EPEEFW I+C+H S+EG ATFNWMRGH+FDYTC V IYEMC+QEP ATVTKV+ Q+KLKY
Sbjct: 245  EPEEFWTINCTHNSDEGTATFNWMRGHLFDYTCGVTIYEMCIQEPIATVTKVKQQEKLKY 304

Query: 2131 PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQE 1952
            PPHPL+TIELEKRASRYFRMSSE TMKVAEDLYQ GFISYPRTETDSFS +TDL  +VQE
Sbjct: 305  PPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDSFSEKTDLRTMVQE 364

Query: 1951 QQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYEL 1772
            Q+GHP WG YAQ+LLDP +GLWRNPS GGHDDKAHPPIHPTKFS GE+ WSQDH R+YEL
Sbjct: 365  QEGHPVWGIYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRWSQDHHRVYEL 424

Query: 1771 VVRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIF 1592
            VVRHFLACVSQPAVG ET VEIDIAGE FSA GRVI+AKNYLDVYRFESWGGS+IP Y F
Sbjct: 425  VVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIPTYSF 484

Query: 1591 GQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDAN 1412
            GQQFTPTTLTLDSGVTR            CMDKAGIGTDATMHDHIKKLLDRFYA KD+N
Sbjct: 485  GQQFTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAIKDSN 544

Query: 1411 TRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKAC 1232
            TRFSPT LGEALVMGYDDMGYELWKPYLR+MMECDMKAVS GTKRK+EVLETCLQQMKAC
Sbjct: 545  TRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSIGTKRKAEVLETCLQQMKAC 604

Query: 1231 FLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMV 1052
            F DAR N+ KLLEAMAIFF+RSNR  G EQ  VGD+VR CG C ESDM L+Q+PDG FMV
Sbjct: 605  FSDARTNKGKLLEAMAIFFERSNRSSGGEQQAVGDVVRRCGLCLESDMVLRQKPDGNFMV 664

Query: 1051 GCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCI 872
            GCLG+PQCRNVVWLPGS SEA+VT   C SC+PGPVF IQ KFR++EIPPNY   HLGCI
Sbjct: 665  GCLGYPQCRNVVWLPGSVSEASVTENTCTSCSPGPVFKIQFKFRRLEIPPNYSVQHLGCI 724

Query: 871  GGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTR-QSACIHCRQTGHSS 695
            GGCD+ LRQL+EIC TGSRN  +  + RGRG  T+SS+A RG++R QS+C +CRQTGH S
Sbjct: 725  GGCDDILRQLVEICGTGSRNN-SNTSGRGRGNPTASSSAQRGNSRAQSSCAYCRQTGHLS 783

Query: 694  NDCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECN 515
            NDC                  +GE+SIPCN CG PC +RTANTANN+GRKF+SCQ +ECN
Sbjct: 784  NDC--PSQASRGRTARAQEVDNGESSIPCNSCGAPCILRTANTANNRGRKFFSCQSQECN 841

Query: 514  FFVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDP 335
            FFVWED++N   A                               G ++ +  FVSATG+P
Sbjct: 842  FFVWEDNLNGGRA--------ERANTSASTSSGRGGRGRGRGQSGAHSSNVSFVSATGEP 893

Query: 334  ISGRCYVCGDPSHFANVCPNRG 269
            I+GRC++CGDP HFANVCP RG
Sbjct: 894  ITGRCFICGDPGHFANVCPRRG 915


>ref|XP_007048480.1| Topoisomerase 3alpha isoform 1 [Theobroma cacao]
            gi|508700741|gb|EOX92637.1| Topoisomerase 3alpha isoform
            1 [Theobroma cacao]
          Length = 914

 Score = 1418 bits (3670), Expect = 0.0
 Identities = 684/922 (74%), Positives = 759/922 (82%), Gaps = 1/922 (0%)
 Frame = -3

Query: 3031 MSGGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLV 2852
            MSG  TI+VLNVAEKPSVAK+VSGILSR+QGLRVR+GRSR+N+IFEF YS+RGQ C+ML 
Sbjct: 1    MSG--TIKVLNVAEKPSVAKSVSGILSRNQGLRVRDGRSRFNRIFEFNYSVRGQPCHMLF 58

Query: 2851 TSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLW 2672
            TSVTGHLMELEFEDR+RKWHSCDPADLYHA VRK VP+DK++IKRTLEEE+R CQWLVLW
Sbjct: 59   TSVTGHLMELEFEDRFRKWHSCDPADLYHAPVRKHVPEDKMDIKRTLEEEARRCQWLVLW 118

Query: 2671 LDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDA 2492
            LDCDREGENIAFEV++VC AVN +L I RARFSALI+REIH + QNL+ PN  F+DAVDA
Sbjct: 119  LDCDREGENIAFEVIDVCRAVNCHLTIRRARFSALIEREIHHATQNLVDPNPWFSDAVDA 178

Query: 2491 RQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAH 2312
            RQEIDLRIGASFTRFQTM+L+D FVID   DDR+LVLSYGPCQFPTLGFVVERYWE+Q+H
Sbjct: 179  RQEIDLRIGASFTRFQTMMLRDKFVIDSATDDRNLVLSYGPCQFPTLGFVVERYWEVQSH 238

Query: 2311 EPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKY 2132
            EPEEFW I+CSH  +EG+ATFNWMRGH+FD+TCAVI+YEMCVQEP ATVTKVR Q+KLKY
Sbjct: 239  EPEEFWTINCSHKLDEGVATFNWMRGHLFDHTCAVIVYEMCVQEPNATVTKVRHQEKLKY 298

Query: 2131 PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQE 1952
            PP+PL+TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD FS+RTDLHAIVQE
Sbjct: 299  PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSSRTDLHAIVQE 358

Query: 1951 QQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYEL 1772
            QQ HPEWGSYAQ+LLDPGT LWRNPS GGHDDKAHPPIHPTKFS GE  WSQDH +LYEL
Sbjct: 359  QQDHPEWGSYAQRLLDPGTSLWRNPSSGGHDDKAHPPIHPTKFSAGEHNWSQDHRKLYEL 418

Query: 1771 VVRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIF 1592
            VVRHFLACVSQPAVG ETTVEIDIA E FS SGRVI+ +NYLDVYR+ESWGGSMIP Y  
Sbjct: 419  VVRHFLACVSQPAVGAETTVEIDIADEQFSTSGRVILERNYLDVYRYESWGGSMIPTYTL 478

Query: 1591 GQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDAN 1412
            GQQF PT+LTLD+GVTR           SCMDKAGIGTDATMHDHIKKLLDRFYATKD+N
Sbjct: 479  GQQFIPTSLTLDTGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDSN 538

Query: 1411 TRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKAC 1232
            TRFSPT LGEALVMGYDDMGYELWKP LRSMME DMK VS G KRK EVL TCLQQMKAC
Sbjct: 539  TRFSPTKLGEALVMGYDDMGYELWKPNLRSMMEFDMKEVSVGNKRKDEVLATCLQQMKAC 598

Query: 1231 FLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMV 1052
            FLDAR+N+VKLLEAMA+FF+RSN+  GD+  V G++VR CG C ES M LK+  DG FMV
Sbjct: 599  FLDARLNKVKLLEAMAVFFERSNQSAGDDNHVAGEVVRQCGLCRESSMVLKKNRDGNFMV 658

Query: 1051 GCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCI 872
            GCLGFPQCRN +WLPGS  EAAVT+ +C SC PGPV++IQ KFRQ+EIPP ++ +HLGCI
Sbjct: 659  GCLGFPQCRNAIWLPGSVLEAAVTSNICGSCNPGPVYLIQFKFRQLEIPPGFNANHLGCI 718

Query: 871  GGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSN 692
            GGCD+ LRQLIEIC TGSR +     ARGRG TT+SSN  R S+RQ AC++C+QTGHSSN
Sbjct: 719  GGCDDILRQLIEICGTGSRMS-----ARGRGPTTTSSNVQRNSSRQGACLYCQQTGHSSN 773

Query: 691  DCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNF 512
            DC                   GE S+ C+ CGTPC +RTANTANN+GRKFYSC  +ECNF
Sbjct: 774  DCPSQFSGSRNSRSRTSSQN-GEPSVSCSTCGTPCVLRTANTANNRGRKFYSCPSQECNF 832

Query: 511  FVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPI 332
            F+WED  NN T G                               +   D  FVSATGDPI
Sbjct: 833  FIWEDEHNNGTGGRSIPRAGINGSASNSSRGGGRGRGRFGQNGAR-AADVTFVSATGDPI 891

Query: 331  SGR-CYVCGDPSHFANVCPNRG 269
            SGR CYVCGDPSHFANVCPNRG
Sbjct: 892  SGRRCYVCGDPSHFANVCPNRG 913


>ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum]
          Length = 920

 Score = 1415 bits (3664), Expect = 0.0
 Identities = 680/922 (73%), Positives = 762/922 (82%), Gaps = 4/922 (0%)
 Frame = -3

Query: 3022 GRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSV 2843
            GR + VLNVAEKPSVAK+V+ ILSR+QGLRVR+GRSRYN+IFEF Y+IRGQ C+ML TSV
Sbjct: 3    GRGVTVLNVAEKPSVAKSVANILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCHMLFTSV 62

Query: 2842 TGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDC 2663
             GHLMELEFEDRYRKWHSCDPADLYHA VRKSVP+DK +IKRTLEEE+R CQWLVLWLDC
Sbjct: 63   IGHLMELEFEDRYRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDC 122

Query: 2662 DREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQE 2483
            DREGENIAFEVV+VC+A NP+L I RARFSALIDREIH++VQNL+ PN+ FADAVDARQE
Sbjct: 123  DREGENIAFEVVDVCTAANPHLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQE 182

Query: 2482 IDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPE 2303
            IDLRIGASFTRFQTML+KDAF+ID   DDR+++LSYGPCQFPTLGFVVERYWEIQAHEPE
Sbjct: 183  IDLRIGASFTRFQTMLMKDAFIIDTITDDRNIILSYGPCQFPTLGFVVERYWEIQAHEPE 242

Query: 2302 EFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPH 2123
            EFW I+CSH S+EG+A F+W RGH+FDYTCAVIIYEMC +EPTATVT VR Q+KLKYPPH
Sbjct: 243  EFWSINCSHRSDEGVANFSWGRGHLFDYTCAVIIYEMCTEEPTATVTNVRQQEKLKYPPH 302

Query: 2122 PLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQG 1943
            PL+TIELEKRASRYFRMSSEHTMKVAE+LYQ+GFISYPRTETD+FS+RTDLHAIVQEQQG
Sbjct: 303  PLSTIELEKRASRYFRMSSEHTMKVAEELYQSGFISYPRTETDNFSSRTDLHAIVQEQQG 362

Query: 1942 HPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVR 1763
            HP+WG YAQ+LLDP  GLWRNP  GGHDDKAHPPIHPTKFS GESGWSQDH +LYELVVR
Sbjct: 363  HPQWGVYAQRLLDPEAGLWRNPRGGGHDDKAHPPIHPTKFSAGESGWSQDHRKLYELVVR 422

Query: 1762 HFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQ 1583
            HFLACVS+PAVG ETTVEIDIAGELFSA GRVI+ KNYLDVY++ESWGGS+IP Y  GQQ
Sbjct: 423  HFLACVSKPAVGAETTVEIDIAGELFSACGRVILEKNYLDVYQYESWGGSIIPTYTIGQQ 482

Query: 1582 FTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRF 1403
            F PTTLTLDSGVTR           SCMDK GIGTDATMHDHIKKLLDRFYATKDA+ RF
Sbjct: 483  FIPTTLTLDSGVTRPPPPLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASMRF 542

Query: 1402 SPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFLD 1223
            +PTNLGEALVMGYDDMGY+LWKPYLR++ME DMK+VS GTK K+EVL+T LQQMKACFLD
Sbjct: 543  TPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKSVSEGTKSKTEVLDTSLQQMKACFLD 602

Query: 1222 ARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGCL 1043
            AR+N+VKLLEAM IFF+RSNR GG+EQ+ +G++VR CG C ESDM LK+  DG FMVGCL
Sbjct: 603  ARLNKVKLLEAMGIFFERSNRSGGEEQNAIGEVVRRCGLCRESDMVLKKSRDGNFMVGCL 662

Query: 1042 GFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGGC 863
            GFPQCRN VWLPGS SEA VTT  C++CTPGPV+ IQ KFRQ+EIPPNYD +HLGCIGGC
Sbjct: 663  GFPQCRNAVWLPGSVSEAVVTTNTCSNCTPGPVYRIQFKFRQLEIPPNYDVNHLGCIGGC 722

Query: 862  DETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSNDCX 683
            DE L QL EIC TG R       AR RG TTS+ NAH  + RQ+ C++C++TGHSSNDC 
Sbjct: 723  DEILTQLTEICGTGPRMP-----ARPRGPTTSTGNAHHTNPRQAVCMNCQETGHSSNDCP 777

Query: 682  XXXXXXXXXXXXXXXXXS--GETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFF 509
                                GE S+ CN CGTPC +RTANTANN+GRKFYSC  +ECNFF
Sbjct: 778  SQTLRSRNARQHGNVMNQQSGEASVSCNSCGTPCVLRTANTANNRGRKFYSCPSQECNFF 837

Query: 508  VWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-QNTIDAMFVSATGDPI 332
            VWED +N+ T G                                 ++ +  FVSATGDPI
Sbjct: 838  VWEDDLNSGTGGGSFTRSNSIPTSNRGRNGRNGGRGARGRGRNASSSSNVTFVSATGDPI 897

Query: 331  SGR-CYVCGDPSHFANVCPNRG 269
            SGR C+VCGDPSHFANVCPNRG
Sbjct: 898  SGRRCFVCGDPSHFANVCPNRG 919


>ref|XP_004239191.1| PREDICTED: DNA topoisomerase 3-alpha-like [Solanum lycopersicum]
          Length = 910

 Score = 1396 bits (3613), Expect = 0.0
 Identities = 672/922 (72%), Positives = 753/922 (81%), Gaps = 3/922 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQ--GLRVREGRSRYNKIFEFEYSIRGQRCNMLV 2852
            GGR IRVLNVAEKPSVAKAVSGILS++Q  G+RVR+GRSRYNKIFEF Y+IR Q C ML 
Sbjct: 5    GGRVIRVLNVAEKPSVAKAVSGILSKNQPGGIRVRDGRSRYNKIFEFNYTIRNQPCQMLF 64

Query: 2851 TSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLW 2672
            TSVTGHLME+EF +RYRKWHSCDP DLY+A +RK VP+DKL+IKRTLE E+R CQW++LW
Sbjct: 65   TSVTGHLMEIEFHERYRKWHSCDPLDLYNAPIRKFVPEDKLDIKRTLEAEARSCQWIILW 124

Query: 2671 LDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDA 2492
            LDCDREGENIAFEV++VC   N NL +WRARFSALIDREIH+SVQ L++PNQLF+DAVD 
Sbjct: 125  LDCDREGENIAFEVLDVCRQANHNLTVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDV 184

Query: 2491 RQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAH 2312
            RQEIDLRIGASFTRFQTMLL+ AFV+DF  DDR+LVLSYGPCQFPTLGFVVERYWEIQAH
Sbjct: 185  RQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 244

Query: 2311 EPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKY 2132
            EPEEFW I+C+H S+EG ATFNWMRGH+FDYTC V+IYEMC+QEP ATVTKV+ Q+KLKY
Sbjct: 245  EPEEFWTINCTHNSDEGTATFNWMRGHLFDYTCGVMIYEMCIQEPIATVTKVKQQEKLKY 304

Query: 2131 PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQE 1952
            PPHPL+TIELEKRASRYFRMSSE TMKVAEDLYQ GFISYPRTETD FS +TDL  +VQE
Sbjct: 305  PPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDCFSDKTDLRTMVQE 364

Query: 1951 QQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYEL 1772
            Q+GHP WG+YAQ+LLDP +GLWRNPS GGHDDKAHPPIHPTKFS GE+ WSQDH R+YEL
Sbjct: 365  QEGHPVWGTYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRWSQDHHRVYEL 424

Query: 1771 VVRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIF 1592
            VVRHFLACVSQPAVG ET VEIDIAGE FSA GRVI+AKNYLDVYRFESWGGS+IP Y F
Sbjct: 425  VVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIPTYSF 484

Query: 1591 GQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDAN 1412
            GQQFTPTTLTLDSGV R            CMDKAGIGTDATMHDHIKKLLDRFYA KD+N
Sbjct: 485  GQQFTPTTLTLDSGVIRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAIKDSN 544

Query: 1411 TRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKAC 1232
            TRFSPT LGEALVMGYDDMGYELWKPYLR+MMECDMKAVSTGTKRK+EVLETCLQQMKAC
Sbjct: 545  TRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSTGTKRKAEVLETCLQQMKAC 604

Query: 1231 FLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMV 1052
            F DAR N+ KLLEAMAIFF+RSNR    EQ  VG +VR CG C ESDM L+Q+PDG FMV
Sbjct: 605  FSDARTNKEKLLEAMAIFFERSNRSSSGEQQAVGAVVRRCGLCLESDMVLRQKPDGNFMV 664

Query: 1051 GCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCI 872
            GCLG+PQCRNVVWLPGS SEA+VT   C +C+PGPVF IQ KFRQ EIPP+Y   HLGCI
Sbjct: 665  GCLGYPQCRNVVWLPGSVSEASVTENTCITCSPGPVFKIQFKFRQQEIPPDYSVQHLGCI 724

Query: 871  GGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTR-QSACIHCRQTGHSS 695
            GGCD+ LRQL+EIC TGSRN      +RGRG  T+ S+A R ++R QS+C +CRQTGH S
Sbjct: 725  GGCDDILRQLVEICGTGSRN------SRGRGNPTAFSSAQRDNSRAQSSCAYCRQTGHLS 778

Query: 694  NDCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECN 515
            NDC                  +GE+S+PCN CG PC +RTANTANN+GRKF+SCQ  ECN
Sbjct: 779  NDC--PSQASRDRTARAQEVDNGESSMPCNSCGAPCILRTANTANNRGRKFFSCQSSECN 836

Query: 514  FFVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDP 335
            FFVWED+++   A                               G ++ +  FVSATG+P
Sbjct: 837  FFVWEDNLSGGRA--------ERANTSASTSSGRGGRGRGRGQSGAHSSNVSFVSATGEP 888

Query: 334  ISGRCYVCGDPSHFANVCPNRG 269
            I+ RC++CGDP HFANVCP RG
Sbjct: 889  ITVRCFICGDPGHFANVCPRRG 910


>ref|XP_004289288.1| PREDICTED: DNA topoisomerase 3-alpha-like [Fragaria vesca subsp.
            vesca]
          Length = 908

 Score = 1394 bits (3608), Expect = 0.0
 Identities = 673/916 (73%), Positives = 744/916 (81%), Gaps = 1/916 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVTGH 2834
            +RVLNVAEKPSVAK+V+ ILSR QGLR+REGRSRYNKI+EF YSI G  C ML TSVTGH
Sbjct: 2    VRVLNVAEKPSVAKSVANILSRGQGLRMREGRSRYNKIYEFNYSINGCHCQMLFTSVTGH 61

Query: 2833 LMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCDRE 2654
            LMELEFEDR+RKWHSCDPA L+ A VRK VP+DKL+IKRTLEEE+R CQWLVLWLDCDRE
Sbjct: 62   LMELEFEDRFRKWHSCDPALLFQAPVRKFVPEDKLDIKRTLEEEARNCQWLVLWLDCDRE 121

Query: 2653 GENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQEIDL 2474
            GENIAFEV++VC++VN +L I RARFSALIDR+IH +VQNL   N+ FADAVDARQEIDL
Sbjct: 122  GENIAFEVIDVCTSVNRHLTIKRARFSALIDRDIHHAVQNLDNANKYFADAVDARQEIDL 181

Query: 2473 RIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFW 2294
            RIGASFTRFQTMLL+DAFVID   DDR+LVLSYGPCQFPTLGF+VERYWEIQ+HEPEEFW
Sbjct: 182  RIGASFTRFQTMLLRDAFVIDSATDDRNLVLSYGPCQFPTLGFIVERYWEIQSHEPEEFW 241

Query: 2293 MIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPHPLN 2114
             I+CSH S+EG ATF WMRGH+FD+ CAVIIYEMCV++P ATVTKVR Q+K KYPP+PLN
Sbjct: 242  TINCSHRSDEGTATFGWMRGHLFDHACAVIIYEMCVEDPIATVTKVRQQEKPKYPPYPLN 301

Query: 2113 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGHPE 1934
            TIELEKRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD FS RTDLHAIVQEQQGHP 
Sbjct: 302  TIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDGFSPRTDLHAIVQEQQGHPG 361

Query: 1933 WGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRHFL 1754
            WGSYAQ+LLDP +GLWRNPS GGHDDKAHPPIHPTKFS GES WSQDH RLYELVVRHFL
Sbjct: 362  WGSYAQRLLDPASGLWRNPSSGGHDDKAHPPIHPTKFSAGESNWSQDHNRLYELVVRHFL 421

Query: 1753 ACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQFTP 1574
            ACVSQPAVG ETTVEIDIAGE+FSASGRVI+AKNYLDVYRFESWGGS++P Y  GQQF P
Sbjct: 422  ACVSQPAVGAETTVEIDIAGEMFSASGRVILAKNYLDVYRFESWGGSLLPTYAVGQQFMP 481

Query: 1573 TTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFSPT 1394
            TTLTLDSGVTR            CMDK GIGTDATMHDHIKKLLDRFYATKDANTRFSPT
Sbjct: 482  TTLTLDSGVTRPPPLLSEADLLGCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFSPT 541

Query: 1393 NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFLDARV 1214
            NLGEALVMGYDDMGY+LWKPYLR++ME DMKAVS G K K+EVLETCLQQMK CFLDAR 
Sbjct: 542  NLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGNKSKAEVLETCLQQMKGCFLDARQ 601

Query: 1213 NRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGCLGFP 1034
            N+VKL EAMA+FF+RSNRPGGD+Q   G+ +R CG C E+DM L++  DG FMVGC+G+P
Sbjct: 602  NKVKLFEAMAVFFERSNRPGGDDQHTSGEFIRRCGLCQEADMVLRKNRDGNFMVGCMGYP 661

Query: 1033 QCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGGCDET 854
            QCRN +WLPGS SEA  TT +CNSCTPGPV +IQ  FR++EIPPNY T+HLGCIGGCDE 
Sbjct: 662  QCRNAIWLPGSVSEAVATTNICNSCTPGPVHLIQFTFRRLEIPPNYSTNHLGCIGGCDEI 721

Query: 853  LRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSNDCXXXX 674
            LRQL EIC TGSR     +AARGRG TT SSN  + +TRQ ACI+C Q+GHSS DC    
Sbjct: 722  LRQLTEICGTGSR-----SAARGRGPTT-SSNVQQNNTRQGACIYCHQSGHSSGDCPSQS 775

Query: 673  XXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFFVWEDS 494
                          SGE S+ C  CG PC +RTANT  N+GRKFY C  +ECNFFVWED+
Sbjct: 776  SGPRSVRPRTMNAQSGEISVSCTTCGAPCVLRTANTTQNRGRKFYKCPSQECNFFVWEDN 835

Query: 493  INNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPISG-RCY 317
            ++N   G                                 T    FVSATGDP SG RC+
Sbjct: 836  VSNGNGGRGFQRANVSAGRGAGGRGSGGRGAQGAGHATGGT----FVSATGDPNSGRRCF 891

Query: 316  VCGDPSHFANVCPNRG 269
            VCGDPSHFANVCPNRG
Sbjct: 892  VCGDPSHFANVCPNRG 907


>ref|XP_006465105.1| PREDICTED: DNA topoisomerase 3-alpha-like [Citrus sinensis]
          Length = 940

 Score = 1382 bits (3576), Expect = 0.0
 Identities = 681/927 (73%), Positives = 751/927 (81%), Gaps = 1/927 (0%)
 Frame = -3

Query: 3043 SASTMSGGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRC 2864
            S     GGR I VLNVAEKPSVAK+V+GILS++QGLR+REGRSRYNKI+EF YSIRGQ C
Sbjct: 28   STQMAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPC 87

Query: 2863 NMLVTSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQW 2684
            +ML+TSVTGHLMEL+F++RYRKWHSCDPADLYHA VRK VP+DK +IK+TLEEE+R CQW
Sbjct: 88   HMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQW 147

Query: 2683 LVLWLDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFAD 2504
            LVLWLDCDREGENIAFEV+EVC AVN +L + RARFSALIDREIH++VQNL+ PNQ FAD
Sbjct: 148  LVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFAD 207

Query: 2503 AVDARQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWE 2324
            AVDARQEIDLRIGASFTRFQTMLLK+ F ID   DDR+LVLSYGPCQFPTLGFVVERYWE
Sbjct: 208  AVDARQEIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 266

Query: 2323 IQAHEPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQ 2144
            IQAHE EEFW I+CSH SEEG ATF+WMRGH+FDYT AVIIYEMCVQEPTATVTKVR Q+
Sbjct: 267  IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQE 326

Query: 2143 KLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHA 1964
            KLKYPP+PL+TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS+ T+LH 
Sbjct: 327  KLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHG 386

Query: 1963 IVQEQQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCR 1784
            IVQEQ GHP+WG YAQ+LLD   GLWRNP  GGHDDKAHPPIHPTKFS+GES WSQDH +
Sbjct: 387  IVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYK 446

Query: 1783 LYELVVRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIP 1604
            LYELVVRHFLACVSQPAVG ET VEI+IAGE+FS SGRVI+AKNYLDVYRFESWGG +IP
Sbjct: 447  LYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIP 506

Query: 1603 KYIFGQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYAT 1424
             Y+ GQQF PTTLTLDSGVTR           SCMDKAGIGTDATMHDHIKKLLDRFYA 
Sbjct: 507  TYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAI 566

Query: 1423 KDANTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQ 1244
            KDANTRF+PTN+GEALVMGYDDMGYELWKP LRSMME DMK VS G K K++VL  CLQQ
Sbjct: 567  KDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQ 626

Query: 1243 MKACFLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDG 1064
            MKACFLDAR+ +VKLLEAM IFF+RS   GG++Q   G++VR CG C ES+M LK+  DG
Sbjct: 627  MKACFLDARLKKVKLLEAMGIFFERS---GGEDQQAAGEVVRQCGICQESNMVLKKSRDG 683

Query: 1063 KFMVGCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDH 884
              MVGCL FPQCRN VWLPGS SEAAVTT  CNSCTPGPV++IQ KFRQ EIPP ++ +H
Sbjct: 684  NLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNH 743

Query: 883  LGCIGGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTG 704
            LGCIGGCDETLRQLIEIC TGSR       ARGRG T SS+N  + + RQ ACI+C+Q G
Sbjct: 744  LGCIGGCDETLRQLIEICGTGSR-----IPARGRGPTASSNNGQQSNHRQRACIYCQQMG 798

Query: 703  HSSNDCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIR 524
            HSS+DC                  SGE+SI C  CGTPC +RTANTANN+GRKFYSC  +
Sbjct: 799  HSSSDCPSQFSGSRNARANGMNPQSGESSIQCTTCGTPCVLRTANTANNRGRKFYSCSSQ 858

Query: 523  ECNFFVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSAT 344
            ECNFFVWED   N T                                G NT    FVSAT
Sbjct: 859  ECNFFVWEDDAKNGT----RRMPQAGVSGSASNPSQRGGRGRGGQSRGHNT-GMTFVSAT 913

Query: 343  GDPISG-RCYVCGDPSHFANVCPNRGT 266
            GDPISG RCYVCG+PSHFAN CPNRG+
Sbjct: 914  GDPISGRRCYVCGEPSHFANACPNRGS 940


>ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Populus trichocarpa]
            gi|222856496|gb|EEE94043.1| hypothetical protein
            POPTR_0005s06810g [Populus trichocarpa]
          Length = 910

 Score = 1378 bits (3567), Expect = 0.0
 Identities = 673/918 (73%), Positives = 749/918 (81%), Gaps = 2/918 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVTGH 2834
            I+VLNVAEKPSVAK+V+ ILSR+Q LRVR+GRSRYNKIFEF YSI GQ+C+MLVTSVTGH
Sbjct: 2    IKVLNVAEKPSVAKSVATILSRNQ-LRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGH 60

Query: 2833 LMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCDRE 2654
            LME+EFEDR+RKWHSCDPADLY A VRK VP+DKL+IKRTLEEE+R C WLVLWLDCDRE
Sbjct: 61   LMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCDRE 120

Query: 2653 GENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQEIDL 2474
            GENIAFEV+EVC  VN NL I RARFSALI+R+IHE+ QNLI PNQ F+DAVDARQEIDL
Sbjct: 121  GENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDL 180

Query: 2473 RIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFW 2294
            RIGASFTRFQTMLL+D FVID   DDR+LVLSYGPCQFPTLGFVVERYWEIQ+HEPEEFW
Sbjct: 181  RIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240

Query: 2293 MIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQ-KLKYPPHPL 2117
             I+C+H S+EG+A+FNWMRGH+FDYT +VI+YEMCV+EPTATV+    QQ KLKYPP+PL
Sbjct: 241  TINCTHRSDEGLASFNWMRGHLFDYTSSVILYEMCVEEPTATVSNRNHQQEKLKYPPYPL 300

Query: 2116 NTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGHP 1937
            +TIELEKRASRYFRMSSE TMKVAEDLYQAGFISYPRTETDSFS+RTDLH IVQE Q HP
Sbjct: 301  STIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSSRTDLHTIVQEHQEHP 360

Query: 1936 EWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRHF 1757
             WGSYAQ+LLDPG GLWRNPS+GGHDDKAHPPIHPTKFS GES WSQDH RLYELVVRHF
Sbjct: 361  VWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESRWSQDHHRLYELVVRHF 420

Query: 1756 LACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQFT 1577
            LACVSQPAVG ET VEIDIAGE FSASGRVI+AKNYLDVYRFESWG SMIP Y+ GQQF 
Sbjct: 421  LACVSQPAVGAETVVEIDIAGERFSASGRVILAKNYLDVYRFESWGDSMIPTYLQGQQFI 480

Query: 1576 PTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFSP 1397
            P TLTLDSGVTR           SCMDKAGIGTDATMHDHIKKLLDRFY TKDANTRFSP
Sbjct: 481  PATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYVTKDANTRFSP 540

Query: 1396 TNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFLDAR 1217
            TNLGEALVMGYDDMGYELWKP LRS+MECDMK VS G K K+EVL TCLQQMKACFLDA+
Sbjct: 541  TNLGEALVMGYDDMGYELWKPNLRSLMECDMKEVSVGNKSKAEVLATCLQQMKACFLDAK 600

Query: 1216 VNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGCLGF 1037
            VN+VKLLEAMAIFF+RS+R  GD+ S +G+ VRPCG C E++M LK+  DG FMVGC GF
Sbjct: 601  VNKVKLLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKNRDGNFMVGCSGF 660

Query: 1036 PQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGGCDE 857
            PQCRN VWLPG   EA +T  +CNSCTPGPV++IQ KFRQ+EIPP ++ +HLGCIGGCDE
Sbjct: 661  PQCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFNVNHLGCIGGCDE 720

Query: 856  TLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSNDCXXX 677
            TLRQLIEIC TGSR    V    G   TT+ SN  R ++RQ+ CI+C QTGH+S DC   
Sbjct: 721  TLRQLIEICGTGSR----VQGGNG-PPTTTPSNPQRSNSRQAPCIYCYQTGHASTDCPSR 775

Query: 676  XXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFFVWED 497
                           +GE+SIPC+ CGTPC +RTANTANN+GRKFYSC  + CNFFVWED
Sbjct: 776  ISATRHVQSHGMNQQNGESSIPCSTCGTPCVLRTANTANNRGRKFYSCSSQACNFFVWED 835

Query: 496  SINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPISG-RC 320
            ++NN +A                                    D  FVSATG+PISG RC
Sbjct: 836  NLNNGSA---PRSAPRPNMSNSASNPSRRGGRGRGVQNAGRAADVTFVSATGEPISGRRC 892

Query: 319  YVCGDPSHFANVCPNRGT 266
            +VCGDPSHFAN CP+RG+
Sbjct: 893  FVCGDPSHFANACPSRGS 910


>gb|EYU20574.1| hypothetical protein MIMGU_mgv1a000984mg [Mimulus guttatus]
          Length = 923

 Score = 1370 bits (3547), Expect = 0.0
 Identities = 661/925 (71%), Positives = 746/925 (80%), Gaps = 6/925 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQ---GLRVREGRSRYNKIFEFEYSIRGQRCNML 2855
            GGR +R LNVAEKPSVAKAVSGILS++    GLRVREGRSRYNKIFEF Y+I+ Q+  M 
Sbjct: 5    GGRPLRALNVAEKPSVAKAVSGILSKNPSSGGLRVREGRSRYNKIFEFNYAIQNQQFQMS 64

Query: 2854 VTSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVL 2675
             TSVTGHLMELEFEDRYRKWHSCDP DLYHA VRK VPQDK +I++TLEEE+R CQWL+L
Sbjct: 65   FTSVTGHLMELEFEDRYRKWHSCDPVDLYHAPVRKHVPQDKSDIEKTLEEEARKCQWLIL 124

Query: 2674 WLDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVD 2495
            WLDCDREGENIAFEVVE C   N NLNIWRARFSALIDREIH++VQ+L+RPNQLFADAVD
Sbjct: 125  WLDCDREGENIAFEVVEACLRTNRNLNIWRARFSALIDREIHDAVQHLVRPNQLFADAVD 184

Query: 2494 ARQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQA 2315
             RQEIDLRIGASFTRFQTMLLKDAFV+DF  ++R+++LSYGPCQFPTLGFVVER+WEIQ+
Sbjct: 185  VRQEIDLRIGASFTRFQTMLLKDAFVLDFATEERNVILSYGPCQFPTLGFVVERFWEIQS 244

Query: 2314 HEPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLK 2135
            HEPEEFW I+C+H SEEG ATF+WMRGH+FDYTCA IIYEMCV EP ATVT VR+Q+K +
Sbjct: 245  HEPEEFWTINCTHNSEEGTATFSWMRGHLFDYTCATIIYEMCVLEPNATVTNVRNQEKPR 304

Query: 2134 YPPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQ 1955
            YPPHPL+TIELEKRASRYFRMSSE TMKVAEDLYQAGFISYPRTETDSFS RTDLH IVQ
Sbjct: 305  YPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSVRTDLHTIVQ 364

Query: 1954 EQQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYE 1775
            EQQGHP WGSYAQ+LLDP  GLWRNPS GGHDDKAHPPIHPTKFS GESGWSQDH ++YE
Sbjct: 365  EQQGHPTWGSYAQRLLDPEAGLWRNPSSGGHDDKAHPPIHPTKFSAGESGWSQDHHKVYE 424

Query: 1774 LVVRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYI 1595
            LVVRHFLACVSQPA+G  TTV+IDIAGE FSASG VI+AKNYLDVYRFE+WGGSMIP Y 
Sbjct: 425  LVVRHFLACVSQPAIGAVTTVDIDIAGEQFSASGTVILAKNYLDVYRFETWGGSMIPTYN 484

Query: 1594 FGQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDA 1415
            +GQQFTPTTLTLDSGVTR           SCMD AGIGTDATMHDHIKKLLDRFYATKD+
Sbjct: 485  YGQQFTPTTLTLDSGVTRPPPLLSEADLLSCMDNAGIGTDATMHDHIKKLLDRFYATKDS 544

Query: 1414 NTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKA 1235
            N RFSPT LGEALV GYDDMGYELWKP LR+MME DMKAVS GTKRKSEVL++CLQQMKA
Sbjct: 545  NMRFSPTKLGEALVKGYDDMGYELWKPNLRAMMESDMKAVSMGTKRKSEVLDSCLQQMKA 604

Query: 1234 CFLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFM 1055
            CF+DAR+N+ KL EAM +FF+RSNR  G+EQ  +G++VR CG C ESDM L+++PDG FM
Sbjct: 605  CFVDARLNKEKLFEAMDVFFERSNRANGNEQQAIGEVVRKCGLCQESDMVLRKKPDGNFM 664

Query: 1054 VGCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGC 875
            VGCLG+PQCRNVVWLPGS SEA VTT +C++C+PGPV+MIQ KFR++EIPPNY+ DHLGC
Sbjct: 665  VGCLGYPQCRNVVWLPGSVSEATVTTTICSTCSPGPVYMIQFKFRRLEIPPNYNVDHLGC 724

Query: 874  IGGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTG--- 704
            IGGCD+TLRQL+EIC TGSR T +V   RG+G T+SSS+A + + R         +    
Sbjct: 725  IGGCDDTLRQLVEICGTGSRTTSSV-PGRGQGHTSSSSSAQQSNYRDQGAWQTASSAWQT 783

Query: 703  HSSNDCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIR 524
             S +                     GE+SIPC  CG  C++RTANT  NKGRKFYSCQ +
Sbjct: 784  ASGSHPSQSSRGRSARSQRAGGAPDGESSIPCTSCGASCNLRTANTEANKGRKFYSCQAQ 843

Query: 523  ECNFFVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSAT 344
             C+FFVWED+IN+                                     T D  FVSAT
Sbjct: 844  GCSFFVWEDNINSGGTAARGGGGRSASTTSRRGGRGRGSRGGG------RTNDVAFVSAT 897

Query: 343  GDPISGRCYVCGDPSHFANVCPNRG 269
            G+PISGRC+VCG+P HF+NVCP RG
Sbjct: 898  GEPISGRCFVCGEPGHFSNVCPCRG 922


>ref|XP_007048481.1| Topoisomerase 3alpha isoform 2, partial [Theobroma cacao]
            gi|508700742|gb|EOX92638.1| Topoisomerase 3alpha isoform
            2, partial [Theobroma cacao]
          Length = 845

 Score = 1365 bits (3533), Expect = 0.0
 Identities = 651/851 (76%), Positives = 725/851 (85%), Gaps = 2/851 (0%)
 Frame = -3

Query: 3031 MSGGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLV 2852
            MSG  TI+VLNVAEKPSVAK+VSGILSR+QGLRVR+GRSR+N+IFEF YS+RGQ C+ML 
Sbjct: 1    MSG--TIKVLNVAEKPSVAKSVSGILSRNQGLRVRDGRSRFNRIFEFNYSVRGQPCHMLF 58

Query: 2851 TSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLW 2672
            TSVTGHLMELEFEDR+RKWHSCDPADLYHA VRK VP+DK++IKRTLEEE+R CQWLVLW
Sbjct: 59   TSVTGHLMELEFEDRFRKWHSCDPADLYHAPVRKHVPEDKMDIKRTLEEEARRCQWLVLW 118

Query: 2671 LDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDA 2492
            LDCDREGENIAFEV++VC AVN +L I RARFSALI+REIH + QNL+ PN  F+DAVDA
Sbjct: 119  LDCDREGENIAFEVIDVCRAVNCHLTIRRARFSALIEREIHHATQNLVDPNPWFSDAVDA 178

Query: 2491 RQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAH 2312
            RQEIDLRIGASFTRFQTM+L+D FVID   DDR+LVLSYGPCQFPTLGFVVERYWE+Q+H
Sbjct: 179  RQEIDLRIGASFTRFQTMMLRDKFVIDSATDDRNLVLSYGPCQFPTLGFVVERYWEVQSH 238

Query: 2311 EPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKY 2132
            EPEEFW I+CSH  +EG+ATFNWMRGH+FD+TCAVI+YEMCVQEP ATVTKVR Q+KLKY
Sbjct: 239  EPEEFWTINCSHKLDEGVATFNWMRGHLFDHTCAVIVYEMCVQEPNATVTKVRHQEKLKY 298

Query: 2131 PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQE 1952
            PP+PL+TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD FS+RTDLHAIVQE
Sbjct: 299  PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSSRTDLHAIVQE 358

Query: 1951 QQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYEL 1772
            QQ HPEWGSYAQ+LLDPGT LWRNPS GGHDDKAHPPIHPTKFS GE  WSQDH +LYEL
Sbjct: 359  QQDHPEWGSYAQRLLDPGTSLWRNPSSGGHDDKAHPPIHPTKFSAGEHNWSQDHRKLYEL 418

Query: 1771 VVRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIF 1592
            VVRHFLACVSQPAVG ETTVEIDIA E FS SGRVI+ +NYLDVYR+ESWGGSMIP Y  
Sbjct: 419  VVRHFLACVSQPAVGAETTVEIDIADEQFSTSGRVILERNYLDVYRYESWGGSMIPTYTL 478

Query: 1591 GQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDAN 1412
            GQQF PT+LTLD+GVTR           SCMDKAGIGTDATMHDHIKKLLDRFYATKD+N
Sbjct: 479  GQQFIPTSLTLDTGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDSN 538

Query: 1411 TRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKAC 1232
            TRFSPT LGEALVMGYDDMGYELWKP LRSMME DMK VS G KRK EVL TCLQQMKAC
Sbjct: 539  TRFSPTKLGEALVMGYDDMGYELWKPNLRSMMEFDMKEVSVGNKRKDEVLATCLQQMKAC 598

Query: 1231 FLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMV 1052
            FLDAR+N+VKLLEAMA+FF+RSN+  GD+  V G++VR CG C ES M LK+  DG FMV
Sbjct: 599  FLDARLNKVKLLEAMAVFFERSNQSAGDDNHVAGEVVRQCGLCRESSMVLKKNRDGNFMV 658

Query: 1051 GCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCI 872
            GCLGFPQCRN +WLPGS  EAAVT+ +C SC PGPV++IQ KFRQ+EIPP ++ +HLGCI
Sbjct: 659  GCLGFPQCRNAIWLPGSVLEAAVTSNICGSCNPGPVYLIQFKFRQLEIPPGFNANHLGCI 718

Query: 871  GGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSN 692
            GGCD+ LRQLIEIC TGSR      +ARGRG TT+SSN  R S+RQ AC++C+QTGHSSN
Sbjct: 719  GGCDDILRQLIEICGTGSR-----MSARGRGPTTTSSNVQRNSSRQGACLYCQQTGHSSN 773

Query: 691  DC--XXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIREC 518
            DC                     GE S+ C+ CGTPC +RTANTANN+GRKFYSC  +EC
Sbjct: 774  DCPSQFSGSRNSRSRTSSQNGMQGEPSVSCSTCGTPCVLRTANTANNRGRKFYSCPSQEC 833

Query: 517  NFFVWEDSINN 485
            NFF+WED  NN
Sbjct: 834  NFFIWEDEHNN 844


>ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
          Length = 925

 Score = 1360 bits (3520), Expect = 0.0
 Identities = 670/935 (71%), Positives = 750/935 (80%), Gaps = 14/935 (1%)
 Frame = -3

Query: 3031 MSGGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLV 2852
            MSGGR+I VLNVAEKPSVAK+V+ ILSR+QGLRVR+GRSRYNKIFEF Y+IRGQ CNM+V
Sbjct: 1    MSGGRSITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIV 60

Query: 2851 TSVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLW 2672
            TSVTGHLMEL FE+RYRKWHSCDP  L+HA V K VP+DKL+IKRTLE+ESR  QWLVLW
Sbjct: 61   TSVTGHLMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLW 120

Query: 2671 LDCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDA 2492
            LDCDREGENIAFEVVEVC+AVN +LNI RA FSALI+R+IH++VQNL++PN+ FADAVDA
Sbjct: 121  LDCDREGENIAFEVVEVCTAVNHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDA 180

Query: 2491 RQEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAH 2312
            RQEIDLRIGASFTRFQT+LLKDAF ID   DDR++VLSYGPCQFPTLGFVVERYWEIQ+H
Sbjct: 181  RQEIDLRIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVERYWEIQSH 240

Query: 2311 EPEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKY 2132
            EPEEFW I+CSH S++GI+TF+W RG++FDYTCAV+ YEMCVQE TATV  VR Q+ LKY
Sbjct: 241  EPEEFWTINCSHNSDDGISTFSWTRGNLFDYTCAVVFYEMCVQESTATVVNVRRQETLKY 300

Query: 2131 PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQE 1952
            PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETD FS RTDLH IV+E
Sbjct: 301  PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTDLHGIVRE 360

Query: 1951 QQGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYEL 1772
            QQ H  WG+YAQ+LLDP + LWRNPS GGHDDKAHPPIHPTKFS GE GWSQDH RLYEL
Sbjct: 361  QQEHQIWGAYAQRLLDPESRLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQDHHRLYEL 420

Query: 1771 VVRHFLACVSQPAVGGETTVEIDIAGELFSASGRV-IIAKNYLDVYRFESWGGSMIPKYI 1595
            VVRHFLACVSQPAVG  TTVEIDIAGELFS S R   I +NYLDVYRFESWGGS IP Y+
Sbjct: 421  VVRHFLACVSQPAVGAVTTVEIDIAGELFSTSKRANSILRNYLDVYRFESWGGSTIPTYV 480

Query: 1594 FGQQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDA 1415
             GQQF PTTLTLDSGVTR           SCMDK GIGTDATMHDHIKKLLDRFYATKDA
Sbjct: 481  SGQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDA 540

Query: 1414 NTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKA 1235
            NTRF+PTNLGEALVMGYDDMGY LWKP LR++ME +MKAVS GTKRK EVL +CLQQMK 
Sbjct: 541  NTRFTPTNLGEALVMGYDDMGYNLWKPNLRAIMEHEMKAVSEGTKRKDEVLASCLQQMKT 600

Query: 1234 CFLDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFM 1055
            CFLDARVN+ KLLEAM +FF+RSN  GGDE   VG++V+ CG C +SDM LK+  DG +M
Sbjct: 601  CFLDARVNKQKLLEAMEVFFERSNGSGGDENRAVGEVVQLCGLCQDSDMVLKRNRDGNYM 660

Query: 1054 VGCLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGC 875
            VGCLGFPQCRNVVWLPGS +EA VT+  C  CTPGPV++IQ KFRQ+EIPPNY+ +HLGC
Sbjct: 661  VGCLGFPQCRNVVWLPGSIAEATVTSDRCTLCTPGPVYLIQFKFRQLEIPPNYNANHLGC 720

Query: 874  IGGCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSS 695
            +GGCD+ LRQL EIC TGSR      +ARGRG  TSSSN  R +  QS CI C+Q GHSS
Sbjct: 721  VGGCDDILRQLTEICGTGSR-----VSARGRG--TSSSNVQRDNPGQSVCIFCQQVGHSS 773

Query: 694  NDCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECN 515
            NDC                  SGE+S+ C+ CG+PC +RTANTANN+GRKFY CQ +ECN
Sbjct: 774  NDC----PSQSVGSRSAQRRQSGESSVSCSSCGSPCVLRTANTANNRGRKFYKCQSQECN 829

Query: 514  FFVWEDSINNS------------TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNT 371
            FFVWED+++N             ++G                              GQ  
Sbjct: 830  FFVWEDNVDNGNGGNSVQRSNVRSSGSAPSNLNPGQNTGRGRGRGRGRGRDRDRDRGQGQ 889

Query: 370  IDAMFVSATGDPISG-RCYVCGDPSHFANVCPNRG 269
            I A FVSATG+PIS  RC+VCGDPSHFANVCPNRG
Sbjct: 890  IAATFVSATGEPISDRRCFVCGDPSHFANVCPNRG 924


>ref|XP_006829322.1| hypothetical protein AMTR_s00202p00033660 [Amborella trichopoda]
            gi|548834342|gb|ERM96738.1| hypothetical protein
            AMTR_s00202p00033660 [Amborella trichopoda]
          Length = 988

 Score = 1319 bits (3413), Expect = 0.0
 Identities = 640/916 (69%), Positives = 724/916 (79%), Gaps = 1/916 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVTGH 2834
            IRVLNVAEKPSVAKAV+GILS+ + LRVREGRSRYNK++EFE++IRGQRC+ML TSVTGH
Sbjct: 81   IRVLNVAEKPSVAKAVAGILSQGR-LRVREGRSRYNKVYEFEHAIRGQRCHMLFTSVTGH 139

Query: 2833 LMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCDRE 2654
            LME+ F +RY+KWHSCDPADL+ A ++K VPQDKL+IKRTLEEE+R CQWLVLWLDCDRE
Sbjct: 140  LMEIVFHERYKKWHSCDPADLFSAPIQKHVPQDKLDIKRTLEEEARTCQWLVLWLDCDRE 199

Query: 2653 GENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQEIDL 2474
            GENIAFEVVEVC+  N NL+IWRA FSALIDREI  +VQNL RPNQLF+DAVDARQEIDL
Sbjct: 200  GENIAFEVVEVCTTANRNLDIWRAHFSALIDREIRHAVQNLGRPNQLFSDAVDARQEIDL 259

Query: 2473 RIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFW 2294
            RIGASFTRFQTMLLK+AFV++ + DD+++++SYGPCQFPTLGFVVERYWEIQAHEPEEFW
Sbjct: 260  RIGASFTRFQTMLLKNAFVLNISDDDKNVIVSYGPCQFPTLGFVVERYWEIQAHEPEEFW 319

Query: 2293 MIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPHPLN 2114
             I+CSH ++EGIATFNW RGH+FDY+CA+IIYEMCV+EPTATV KV  Q++ KYPPHPL+
Sbjct: 320  TINCSHKTDEGIATFNWTRGHLFDYSCALIIYEMCVEEPTATVKKVSHQERRKYPPHPLS 379

Query: 2113 TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGHPE 1934
            T+EL+KRAS+YFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS  TDL A+V+EQQGHPE
Sbjct: 380  TLELQKRASQYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSPNTDLQALVREQQGHPE 439

Query: 1933 WGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRHFL 1754
            WGSYAQ+LL P  GLWRNPS GGHDDKAHPPIHPTKFS GES WS DH RLYELVVRHFL
Sbjct: 440  WGSYAQRLLSP-EGLWRNPSSGGHDDKAHPPIHPTKFSAGESSWSPDHHRLYELVVRHFL 498

Query: 1753 ACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQFTP 1574
            ACVSQPA+G  TTVEIDIAGE+F ASG +II KNYL+VYRFESWGGS IP Y FGQQF P
Sbjct: 499  ACVSQPAIGAGTTVEIDIAGEVFVASGLMIIEKNYLEVYRFESWGGSTIPTYAFGQQFIP 558

Query: 1573 TTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFSPT 1394
            T LTLDS VTR           SCMDKAGIGTDATMHDHIKKLLDRFYA KD+NTRFSPT
Sbjct: 559  TRLTLDSSVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDSNTRFSPT 618

Query: 1393 NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFLDARV 1214
             LGEALVMGYD MG++LWKP LRS ME DMKAVS G K KSEVL +CLQQMK CFLD + 
Sbjct: 619  TLGEALVMGYDCMGWDLWKPNLRSAMESDMKAVSEGRKTKSEVLASCLQQMKDCFLDVKS 678

Query: 1213 NRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGCLGFP 1034
            ++ KL E M IFF+RSN PGGD   + G  VR C  C ES+M L++RPDG FMVGCL FP
Sbjct: 679  HKAKLFETMGIFFERSNTPGGDNLHLAGGKVRSCQQCQESEMVLRRRPDGSFMVGCLRFP 738

Query: 1033 QCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGGCDET 854
             CRNVVWLPG+ SEA VT  VCN C P PVF IQ KFR+MEIPPN+DT+HLGCIGGCDET
Sbjct: 739  LCRNVVWLPGAISEALVTEHVCNVCNPEPVFKIQFKFRRMEIPPNFDTEHLGCIGGCDET 798

Query: 853  LRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSNDCXXXX 674
            LR+LI+IC TG RN  + +  RGR  T  S +A R +T Q  C  CRQ+GHSSNDC    
Sbjct: 799  LRELIQICGTGPRNLSSGSGTRGRQPTQFSGSAQRRNTSQVVCARCRQSGHSSNDCPQIS 858

Query: 673  XXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFFVWEDS 494
                          SG   + C  C  PC+VRTANT NN+GR+FY C  +ECNFF+WED+
Sbjct: 859  RSQDAQRPGHGNSNSGGADVLCESCQMPCTVRTANTENNRGRRFYKCDRQECNFFIWEDA 918

Query: 493  INNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPISG-RCY 317
            I +   G                                    A FV+ATG+P+S  RC+
Sbjct: 919  IGSGNRGASRVNGNRSSVRGGQAGRGRGRRGARSGA-------ATFVTATGEPVSDRRCF 971

Query: 316  VCGDPSHFANVCPNRG 269
             CGDPSHFANVCPNRG
Sbjct: 972  SCGDPSHFANVCPNRG 987


>ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223533243|gb|EEF34998.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 833

 Score = 1310 bits (3389), Expect = 0.0
 Identities = 626/837 (74%), Positives = 701/837 (83%), Gaps = 2/837 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQ--GLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVT 2840
            I VLNVAEKPSVAK+V+ ILSR+Q  GLRVREG+SRYNKIFEF Y I GQ C+MLVTSVT
Sbjct: 2    INVLNVAEKPSVAKSVATILSRNQQHGLRVREGQSRYNKIFEFNYVINGQNCHMLVTSVT 61

Query: 2839 GHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCD 2660
            GHLMELEF+DR+RKWHSCDPADLYHA VRK VP+DK  IKRTLEEE+R CQWL+LWLDCD
Sbjct: 62   GHLMELEFDDRFRKWHSCDPADLYHAPVRKFVPEDKTNIKRTLEEEARRCQWLILWLDCD 121

Query: 2659 REGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQEI 2480
            REGENIAFEVV+VC + N  L + RARFSALIDREIHE+ QNL+ PNQ F+DAVDARQEI
Sbjct: 122  REGENIAFEVVDVCRSANRYLTVRRARFSALIDREIHEAAQNLVSPNQWFSDAVDARQEI 181

Query: 2479 DLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEE 2300
            DLRIGASFTRFQT+LL+D FVID   DDR+LVLSYGPCQFPTLGF+VERYWEIQ+HE EE
Sbjct: 182  DLRIGASFTRFQTLLLRDKFVIDSAQDDRNLVLSYGPCQFPTLGFIVERYWEIQSHESEE 241

Query: 2299 FWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPHP 2120
            FW I+CSHTS EGIA F+WMRGH+FDYT AVI+YE+CV EPTATVTKV+ ++K KYPP+P
Sbjct: 242  FWTINCSHTSVEGIANFSWMRGHLFDYTSAVILYELCVLEPTATVTKVQQKEKQKYPPYP 301

Query: 2119 LNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGH 1940
            L+TIELEKRASRYF MSSE TMKVAEDLYQ+GFISYPRTETD FS+RTDLH IV++QQ H
Sbjct: 302  LSTIELEKRASRYFHMSSEQTMKVAEDLYQSGFISYPRTETDGFSSRTDLHTIVRDQQAH 361

Query: 1939 PEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRH 1760
            P WGSYAQ+LLDPGTGLWRNPS GGHDDKAHPPIHPTKFS GE+GWSQDH R+YELVVRH
Sbjct: 362  PIWGSYAQRLLDPGTGLWRNPSTGGHDDKAHPPIHPTKFSPGETGWSQDHHRVYELVVRH 421

Query: 1759 FLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQF 1580
            FLACVSQPAVG ETTVEIDIAGE FSASGRVI+AKNYLDVYRFESWGGSMIP Y+ GQQF
Sbjct: 422  FLACVSQPAVGAETTVEIDIAGEQFSASGRVILAKNYLDVYRFESWGGSMIPTYVHGQQF 481

Query: 1579 TPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFS 1400
             PTTLTLDSGVTR           SCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFS
Sbjct: 482  MPTTLTLDSGVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFS 541

Query: 1399 PTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFLDA 1220
            PTNLGEALVMGYDDMGYELWKP LRSMME DMK VS G K K+EVLETCLQQMK CFLDA
Sbjct: 542  PTNLGEALVMGYDDMGYELWKPNLRSMMEYDMKEVSMGHKSKAEVLETCLQQMKTCFLDA 601

Query: 1219 RVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGCLG 1040
            R+N+VKLLEAMA+FF+RS+R  G++     DIVR CG C E++M L++  DG FMVGC+G
Sbjct: 602  RINKVKLLEAMAVFFERSDRSSGNDNHATVDIVRQCGLCRETNMVLRRNRDGNFMVGCMG 661

Query: 1039 FPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGGCD 860
            +PQCRN +WLPG   EA VTT VCN CTPGPV++IQ KFRQ+EIPP +  +HLGCIGGCD
Sbjct: 662  YPQCRNAIWLPGPIIEATVTTSVCNYCTPGPVYLIQFKFRQLEIPPGFSVNHLGCIGGCD 721

Query: 859  ETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSNDCXX 680
            +TLRQL +IC TGSR       AR R   T+ SN+ + +TR + C+HC QTGH+S DC  
Sbjct: 722  DTLRQLTDICGTGSR-----VQARARAPNTTPSNSQQSNTRFATCVHCHQTGHASIDCPL 776

Query: 679  XXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFF 509
                             GE+S+ C  CGTPC++RTANTANN+GRKFYSC  + CNFF
Sbjct: 777  QLSGSRRVQSRGTNEQMGESSVTCGTCGTPCALRTANTANNRGRKFYSCPSQSCNFF 833


>ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryza brachyantha]
          Length = 923

 Score = 1306 bits (3380), Expect = 0.0
 Identities = 630/921 (68%), Positives = 729/921 (79%), Gaps = 2/921 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQG-LRVREGRSRYNKIFEFEYSIRGQRCNMLVT 2849
            GG  IRVLNVAEKPSVAK+V+ ILSR  G +R REGRSRYN++FEF YSI G+ C+MLVT
Sbjct: 6    GGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFGYSIGGRACHMLVT 65

Query: 2848 SVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWL 2669
            SVTGHLMELEF+DR+R+WHSCDPADL+HA VRKSVPQDK +IKRTLEEE+R CQWLVLWL
Sbjct: 66   SVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARNCQWLVLWL 125

Query: 2668 DCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDAR 2489
            DCDREGENIA+EV+++CS  N  LNIWRARFSALIDREIHE+VQ+L RPN+LFADAVDAR
Sbjct: 126  DCDREGENIAYEVIDICSGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDAR 185

Query: 2488 QEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHE 2309
            QEIDLRIGASFTRFQTMLL+DAFV+D TGD+R+++LSYGPCQFPTLGF+VER+WEIQAHE
Sbjct: 186  QEIDLRIGASFTRFQTMLLRDAFVLDDTGDERNMILSYGPCQFPTLGFIVERFWEIQAHE 245

Query: 2308 PEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYP 2129
            PEEFW I+CSHTS+EG A+F W+RGH+FDY+ AV+IYEMCV+EP ATV  VR+Q+KLKYP
Sbjct: 246  PEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQEKLKYP 305

Query: 2128 PHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQ 1949
            P+PL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS  TDLH+IVQEQ
Sbjct: 306  PYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHSIVQEQ 365

Query: 1948 QGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELV 1769
              HP WG+YAQ+LLDP   LWRNPS+GGHDDKAHPPIHPTKFS GE+ WS +H +LYELV
Sbjct: 366  TAHPVWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWSDNHKKLYELV 425

Query: 1768 VRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFG 1589
            VRHFLAC SQPAVG ETTVEIDIAGE F+ASGRV+++KNYLDVYRF+SWGG+++P Y  G
Sbjct: 426  VRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLSKNYLDVYRFDSWGGTLLPTYTIG 485

Query: 1588 QQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANT 1409
            QQF PTTLTLDSGVTR           SCMDKAGIGTDATMHDHIKKLLDR YATKDANT
Sbjct: 486  QQFIPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKDANT 545

Query: 1408 RFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACF 1229
            RFSPTNLGEALVMGYD+MGYELWKPYLRSMME DMK+VS GTK K+EVLE CLQQMKACF
Sbjct: 546  RFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKAEVLENCLQQMKACF 605

Query: 1228 LDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVG 1049
            LDAR N+VKL +AM  FF RS+RP  + Q+ + + VRPC AC+ES+M LK+RP G+FMVG
Sbjct: 606  LDARANKVKLFDAMGAFFARSSRPINETQNSI-EAVRPCAACNESEMVLKRRPTGEFMVG 664

Query: 1048 CLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIG 869
            C GFPQCRNVVWLPGS SEA+VT QVC +C PGPV+ IQ KFR+ +IPP++D DHLGCIG
Sbjct: 665  CRGFPQCRNVVWLPGSLSEASVTDQVCPTCAPGPVYKIQFKFRRRDIPPSFDVDHLGCIG 724

Query: 868  GCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSND 689
            GCD+ L++L EI R GS N  A  A   R Q+ + S A +G+ RQ      R     +N 
Sbjct: 725  GCDDILKELTEISRFGSHNQTATPA---RNQSQNPSGARQGAPRQDLHTDFRPARQFTNG 781

Query: 688  CXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFF 509
                               +    + C  CG PC +RTANT  N+GRKFY CQ   C FF
Sbjct: 782  HTPVVNPQGFRSTHTGSSGNASGQVQCTSCGEPCILRTANTEANRGRKFYKCQDPACGFF 841

Query: 508  VWEDSINNST-AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPI 332
             WED + NS   G                              G+N    MFV+ATG+P+
Sbjct: 842  AWEDDVQNSVPRGRGRGGRSGSRQASASAGRRGGSQARGRRGRGRNADGMMFVAATGEPV 901

Query: 331  SGRCYVCGDPSHFANVCPNRG 269
             G C+VCGDP+HFAN CP+RG
Sbjct: 902  HGSCFVCGDPTHFANACPSRG 922


>ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
            gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa
            Japonica Group]
          Length = 928

 Score = 1301 bits (3366), Expect = 0.0
 Identities = 627/926 (67%), Positives = 727/926 (78%), Gaps = 7/926 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQG-LRVREGRSRYNKIFEFEYSIRGQRCNMLVT 2849
            GG  IRVLNVAEKPSVAK+V+ ILSR  G +R REGRSRYN++FEF+YSI G+ C+MLVT
Sbjct: 6    GGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVT 65

Query: 2848 SVTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWL 2669
            SVTGHLMELEF+DR+R+WHSCDPADL+HA VRKSVPQDK +IKRTLEEE+R CQWLVLWL
Sbjct: 66   SVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVLWL 125

Query: 2668 DCDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDAR 2489
            DCDREGENIA+EV+++C+  N  LNIWRARFSALIDREIHE+VQ+L RPN+LFADAVDAR
Sbjct: 126  DCDREGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDAR 185

Query: 2488 QEIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHE 2309
            QEIDLRIGASFTRFQTMLLKDAFV+D TGDDR+++LSYGPCQFPTLGF+VER+WEIQAHE
Sbjct: 186  QEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWEIQAHE 245

Query: 2308 PEEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYP 2129
            PEEFW I+CSHTS+EG A+F W+RGH+FDY+ AV+IYEMCV+EP ATV  VR+Q+KLKYP
Sbjct: 246  PEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQEKLKYP 305

Query: 2128 PHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQ 1949
            P+PL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS  TDLH+IV EQ
Sbjct: 306  PYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHSIVHEQ 365

Query: 1948 QGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELV 1769
              HP WG+YAQ+LLDP   LWRNPS+GGHDDKAHPPIHPTKFS GE+ W+ +H +LYELV
Sbjct: 366  VAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKKLYELV 425

Query: 1768 VRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFG 1589
            VRHFLAC SQPAVG ETTVEIDIAGE F+ASGRV++AKNYLDVYRF+SWGG+++P YI G
Sbjct: 426  VRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLPTYIIG 485

Query: 1588 QQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANT 1409
            QQF PTTLTLDSG+TR            CMDKAGIGTDATMHDHIKKLLDR YATKDANT
Sbjct: 486  QQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRCYATKDANT 545

Query: 1408 RFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACF 1229
            RFSPTNLGEALVMGYD+MGYELWKPYLRSMME DMK+VS GTK KSEVLE CLQQMKACF
Sbjct: 546  RFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLENCLQQMKACF 605

Query: 1228 LDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVG 1049
            LDAR N+VKL +AM  FF RS+RP  + Q+ + + VRPC AC+ES+M LKQRP G+FMVG
Sbjct: 606  LDARANKVKLFDAMGTFFARSSRPVNETQNSI-ETVRPCAACNESEMFLKQRPTGEFMVG 664

Query: 1048 CLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIG 869
            C GFPQCRNVVWLP S S AAVT QVC +C PGPV+ IQ KFR+ +IPPN+D DHLGCIG
Sbjct: 665  CRGFPQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHLGCIG 724

Query: 868  GCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSND 689
            GCD+ L++L+E+ R GS +  A  A   R Q+ ++S   +GS+RQ            +N 
Sbjct: 725  GCDDILKELMELSRFGSHSQTATPA---RNQSQTASGVRQGSSRQDLHTSFHPAVQFTNG 781

Query: 688  CXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFF 509
                               +    + C  C  PC +RTANT  N+GRKFY CQ   C FF
Sbjct: 782  QTPVVNPQGFRSTHTQSSGNASGQVQCTSCREPCVLRTANTEANRGRKFYKCQNLACGFF 841

Query: 508  VWEDSINNST------AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSA 347
             WED + NS        G                              G+N    MFV+A
Sbjct: 842  AWEDDVENSAPRGRGGRGRGGRSSSRQSSASASAGRRGGTQGRGRRGRGRNADGMMFVAA 901

Query: 346  TGDPISGRCYVCGDPSHFANVCPNRG 269
            TG+P+ G C++CGDP+HFANVCPN G
Sbjct: 902  TGEPVYGSCFICGDPTHFANVCPNLG 927


>ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha isoform X1 [Glycine max]
            gi|571460704|ref|XP_006581776.1| PREDICTED: DNA
            topoisomerase 3-alpha isoform X2 [Glycine max]
          Length = 913

 Score = 1288 bits (3334), Expect = 0.0
 Identities = 633/921 (68%), Positives = 721/921 (78%), Gaps = 6/921 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVTGH 2834
            + VLNVAEKP VA+ V+ ILSR+Q +R+REGRSRYNKIFEF Y+IRGQ C+M+ TSVTGH
Sbjct: 1    MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFNYTIRGQPCHMIFTSVTGH 60

Query: 2833 LMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCDRE 2654
            LMELEF+DRYRKWHSCDPADL+ A V K VP+DK +IKRTLEEE+R CQWL+LWLDCD E
Sbjct: 61   LMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDVE 120

Query: 2653 GENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIR-PNQLFADAVDARQEID 2477
            GENIA+EV++VC+AVNP+L I RA FS LIDR+IH + QN +R P++  ADAVD RQEID
Sbjct: 121  GENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQEID 180

Query: 2476 LRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEEF 2297
            LRIGASFTRFQTML+KDAF+ID   DDR+ VLSYGPCQFPTLGFVVER+WEIQAHEPEEF
Sbjct: 181  LRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPEEF 240

Query: 2296 WMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPHPL 2117
            W I CSH S+EG A F+WMRG +FDYTCAVIIYEMCV+EPTATVT +R Q+K KYPP PL
Sbjct: 241  WSIICSHESKEGTAEFSWMRGRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKPKYPPFPL 300

Query: 2116 NTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGHP 1937
            NTIEL+KRASRYFRMSS+HTMKVAE+LYQAGFISYPRTETDSFS  TDLH IVQEQQGHP
Sbjct: 301  NTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSPGTDLHTIVQEQQGHP 360

Query: 1936 EWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRHF 1757
            EWG YAQ+L+DP  GLWRNP  GGHDDKAHPPI+PTKFSTGESGWSQDH +LYELVVRHF
Sbjct: 361  EWGIYAQRLMDPEAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWSQDHRKLYELVVRHF 420

Query: 1756 LACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQFT 1577
            LACVS+PA+G ETTVEI+IAGELFSA GRVI+ KNYLDVYR+ESWGGSMIP Y  GQQF 
Sbjct: 421  LACVSKPALGAETTVEINIAGELFSACGRVILEKNYLDVYRYESWGGSMIPTYTNGQQFN 480

Query: 1576 PTTLTLDSGVTRXXXXXXXXXXXSCMDK--AGIGTDATMHDHIKKLLDRFYATKDANTRF 1403
            PT LTL+SGVTR           S MD+  A IGTDATM DHIKK+LDR YATKD++TRF
Sbjct: 481  PTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRSYATKDSSTRF 540

Query: 1402 SPTNLGEALVMGYDD--MGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACF 1229
            +PTNLGEALV+GYDD  M Y+LWKP LRS ME  M  V  G K K+EVL T LQ+M+ACF
Sbjct: 541  TPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSKAEVLVTILQKMEACF 600

Query: 1228 LDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVG 1049
            L+AR+N+VKLLEAMAIFF+RS R   DE    G++VR CG C ESDM L++  DG FMVG
Sbjct: 601  LEARLNKVKLLEAMAIFFERSTRSSSDELHATGEVVRRCGLCQESDMLLRKNRDGNFMVG 660

Query: 1048 CLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIG 869
            C+G+PQCRN VWLPGS SEA VTT  CN CTPGPV++IQ KFR++EIPPNY  +HLGCIG
Sbjct: 661  CMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRLEIPPNYSPNHLGCIG 720

Query: 868  GCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSND 689
            GCDE L QL EIC  G R       AR RG T  +SNAH  + RQ AC++CR+TGHSS D
Sbjct: 721  GCDEILAQLTEICGRGPRMP-----ARPRGPTAPTSNAHHTNPRQGACMNCRETGHSSTD 775

Query: 688  CXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFF 509
            C                   GE S+ C+ CGTPC +RTANT NN+GRKFYSCQ +ECNFF
Sbjct: 776  CPLRYGNVQHHGTSEHN---GEASVSCSSCGTPCVLRTANTVNNRGRKFYSCQSQECNFF 832

Query: 508  VWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPIS 329
            VWEDS+N  T G                               + T +  F+SATGDPIS
Sbjct: 833  VWEDSLNAGTGGRSVTRSNSIPALNPRQTGGRGSRGRGGQYGSR-TANTTFMSATGDPIS 891

Query: 328  GR-CYVCGDPSHFANVCPNRG 269
            GR CY CGDPSHFANVCP+RG
Sbjct: 892  GRRCYTCGDPSHFANVCPHRG 912


>ref|XP_006581777.1| PREDICTED: DNA topoisomerase 3-alpha isoform X3 [Glycine max]
          Length = 910

 Score = 1282 bits (3317), Expect = 0.0
 Identities = 632/921 (68%), Positives = 721/921 (78%), Gaps = 6/921 (0%)
 Frame = -3

Query: 3013 IRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTSVTGH 2834
            + VLNVAEKP VA+ V+ ILSR+Q +R+REGRSRYNKIFEF Y+IRGQ C+M+ TSVTGH
Sbjct: 1    MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFNYTIRGQPCHMIFTSVTGH 60

Query: 2833 LMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLDCDRE 2654
            LMELEF+DRYRKWHSCDPADL+ A V K VP+DK +IKRTLEEE+R CQWL+LWLDCD E
Sbjct: 61   LMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDVE 120

Query: 2653 GENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIR-PNQLFADAVDARQEID 2477
            GENIA+EV++VC+AVNP+L I RA FS LIDR+IH + QN +R P++  ADAVD RQEID
Sbjct: 121  GENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQEID 180

Query: 2476 LRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEPEEF 2297
            LRIGASFTRFQTML+KDAF+ID   DDR+ VLSYGPCQFPTLGFVVER+WEIQAHEPEEF
Sbjct: 181  LRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPEEF 240

Query: 2296 WMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPPHPL 2117
            W I CSH S+EG A F+WMRG +FDYTCAVIIYEMCV+EPTATVT +R Q+K KYPP PL
Sbjct: 241  WSIICSHESKEGTAEFSWMRGRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKPKYPPFPL 300

Query: 2116 NTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQGHP 1937
            NTIEL+KRASRYFRMSS+HTMKVAE+LYQAGFISYPRTETDSFS  TDLH IVQEQQGHP
Sbjct: 301  NTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSPGTDLHTIVQEQQGHP 360

Query: 1936 EWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVVRHF 1757
            EWG YAQ+L+DP  GLWRNP  GGHDDKAHPPI+PTKFSTGESGWSQDH +LYELVVRHF
Sbjct: 361  EWGIYAQRLMDPEAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWSQDHRKLYELVVRHF 420

Query: 1756 LACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQQFT 1577
            LACVS+PA+G ETTVEI+IAGELFSA GRVI+ KNYLDVYR+ESWGGSMIP Y  GQQF 
Sbjct: 421  LACVSKPALGAETTVEINIAGELFSACGRVILEKNYLDVYRYESWGGSMIPTYTNGQQFN 480

Query: 1576 PTTLTLDSGVTRXXXXXXXXXXXSCMDK--AGIGTDATMHDHIKKLLDRFYATKDANTRF 1403
            PT LTL+SGVTR           S MD+  A IGTDATM DHIKK+LDR YATKD++TRF
Sbjct: 481  PTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRSYATKDSSTRF 540

Query: 1402 SPTNLGEALVMGYDD--MGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACF 1229
            +PTNLGEALV+GYDD  M Y+LWKP LRS ME  M  V  G K K+EVL T LQ+M+ACF
Sbjct: 541  TPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSKAEVLVTILQKMEACF 600

Query: 1228 LDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVG 1049
            L+AR+N+VKLLEAMAIFF+RS+    DE    G++VR CG C ESDM L++  DG FMVG
Sbjct: 601  LEARLNKVKLLEAMAIFFERSS---SDELHATGEVVRRCGLCQESDMLLRKNRDGNFMVG 657

Query: 1048 CLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIG 869
            C+G+PQCRN VWLPGS SEA VTT  CN CTPGPV++IQ KFR++EIPPNY  +HLGCIG
Sbjct: 658  CMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRLEIPPNYSPNHLGCIG 717

Query: 868  GCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTGHSSND 689
            GCDE L QL EIC  G R       AR RG T  +SNAH  + RQ AC++CR+TGHSS D
Sbjct: 718  GCDEILAQLTEICGRGPRMP-----ARPRGPTAPTSNAHHTNPRQGACMNCRETGHSSTD 772

Query: 688  CXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNFF 509
            C                   GE S+ C+ CGTPC +RTANT NN+GRKFYSCQ +ECNFF
Sbjct: 773  CPLRYGNVQHHGTSEHN---GEASVSCSSCGTPCVLRTANTVNNRGRKFYSCQSQECNFF 829

Query: 508  VWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPIS 329
            VWEDS+N  T G                               + T +  F+SATGDPIS
Sbjct: 830  VWEDSLNAGTGGRSVTRSNSIPALNPRQTGGRGSRGRGGQYGSR-TANTTFMSATGDPIS 888

Query: 328  GR-CYVCGDPSHFANVCPNRG 269
            GR CY CGDPSHFANVCP+RG
Sbjct: 889  GRRCYTCGDPSHFANVCPHRG 909


>ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana]
            gi|8777305|dbj|BAA96895.1| DNA topoisomerase III
            [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1|
            topoisomerase 3 alpha [Arabidopsis thaliana]
            gi|332010433|gb|AED97816.1| topoisomerase 3alpha
            [Arabidopsis thaliana]
          Length = 926

 Score = 1281 bits (3316), Expect = 0.0
 Identities = 630/921 (68%), Positives = 718/921 (77%), Gaps = 3/921 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTS 2846
            GG  + VLNVAEKPSVAK+V+GILSR    R REGRSRYNKIFEF+Y+I GQ C ML+TS
Sbjct: 5    GGGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTS 63

Query: 2845 VTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLD 2666
            V GHLMELEF DRYRKWHSCDPADLY A V K VP+DK +IK+TLEEE+R   WLVLWLD
Sbjct: 64   VIGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLD 123

Query: 2665 CDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQ 2486
            CDREGENIAFEVV+VC AV  NL I RA FSALIDR+IHE+VQNL  PNQLFA+AVDARQ
Sbjct: 124  CDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183

Query: 2485 EIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEP 2306
            EIDLRIGASFTRFQTMLL+D F ID TG++RS V+SYGPCQFPTLGF+VERYWEIQAHEP
Sbjct: 184  EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEP 243

Query: 2305 EEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKV-RDQQKLKYP 2129
            EEFW I+CSH SEEG+ATFNWMRGH+FDY  AVI+YEMCV+EPTATV  V   +++ KYP
Sbjct: 244  EEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYP 303

Query: 2128 PHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQ 1949
            P+PLNTIELEKRASRYFR+SSEHTMKVAE+LYQAGFISYPRTETDSFS+RTDL A+V+EQ
Sbjct: 304  PYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAMVEEQ 363

Query: 1948 QGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELV 1769
              HP WGSYAQ+LL+P  GLWRNP++GGHDDKAHPPIHPTKFS+GES WS+DH  +YELV
Sbjct: 364  TRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELV 423

Query: 1768 VRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFG 1589
            VRH+LACVSQPAV  ETTVEIDIAGE FSASGR I+AKNYL+VYRFESWGGS+IP Y  G
Sbjct: 424  VRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKG 483

Query: 1588 QQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANT 1409
            QQF PTTLTLD+ VTR           SCMDKAGIGTDATMHDHIKKLLDR YATKDANT
Sbjct: 484  QQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANT 543

Query: 1408 RFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACF 1229
            RFSPTNLGEALVMGYDDMGYELWKP LR++ME DM  VS G K K+EVLETCLQQMKACF
Sbjct: 544  RFSPTNLGEALVMGYDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACF 603

Query: 1228 LDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVG 1049
            LDARV + KLLEAM IFF+RSN     E    G++VR C  C+ESDM L++  DG FMVG
Sbjct: 604  LDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMVG 663

Query: 1048 CLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIG 869
            C+ +PQCRN VWLPG T EA+VTT VC SC PGPV+ I  KFRQ+ IPP +D +HLGC+G
Sbjct: 664  CMNYPQCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGFDVNHLGCVG 723

Query: 868  GCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQS-ACIHCRQTGHSSN 692
            GCD+ L+QLI+IC TGSR+      AR    T  S+N    +TRQS  CIHC+Q GH+S 
Sbjct: 724  GCDDILKQLIDICGTGSRSQ-----ARRTPGTAPSNNIQGSNTRQSNVCIHCQQRGHAST 778

Query: 691  DCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNF 512
            +C                  + E+++ CN CG+ C +RTANT  N+GR+F+SC  + C+F
Sbjct: 779  NCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEANRGRQFFSCPTQGCSF 838

Query: 511  FVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPI 332
            F WEDSINNS+ G                              G+      FVSATG+P+
Sbjct: 839  FAWEDSINNSS-GNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRRGSGTSFVSATGEPV 897

Query: 331  SG-RCYVCGDPSHFANVCPNR 272
            SG RC+ CGDPSHFAN CPNR
Sbjct: 898  SGIRCFSCGDPSHFANACPNR 918


>ref|XP_004985595.1| PREDICTED: DNA topoisomerase 3-alpha-like [Setaria italica]
          Length = 917

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 632/920 (68%), Positives = 720/920 (78%), Gaps = 2/920 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTS 2846
            GG  IRVLNVAEKPSVAKAV+ ILSR   ++ R GRS YN++FEF Y+I G+ C MLVTS
Sbjct: 6    GGGAIRVLNVAEKPSVAKAVAEILSRGS-MQSRAGRSPYNRVFEFNYAINGRACRMLVTS 64

Query: 2845 VTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLD 2666
            VTGHLMELEF+DR+R+WHSCDPADL+HA VRKSVPQDK  IK+TLEEE+R CQWLVLWLD
Sbjct: 65   VTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLD 124

Query: 2665 CDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQ 2486
            CDREGENIA+EV+EVC+  N +LNIWRARFSALIDREIHESVQ+L RPN+LFADAVDARQ
Sbjct: 125  CDREGENIAYEVIEVCTGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQ 184

Query: 2485 EIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEP 2306
            EIDLRIGASFTRFQTMLLKDAFVID TGDDR+LVLSYGPCQFPTLGF+VER+WEIQAHEP
Sbjct: 185  EIDLRIGASFTRFQTMLLKDAFVIDVTGDDRNLVLSYGPCQFPTLGFIVERFWEIQAHEP 244

Query: 2305 EEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKVRDQQKLKYPP 2126
            EEFW I+C+HTS+EG A+F W+RGH+FDY  AVI+YEMCV+EP ATV  VR+Q+KLKYPP
Sbjct: 245  EEFWTINCTHTSDEGTASFGWIRGHLFDYPSAVILYEMCVEEPMATVQNVRNQEKLKYPP 304

Query: 2125 HPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQQ 1946
            +PL+T+EL+KRASRYFRMSSEHTMKVAE+LYQAGFISYPRTETD+FS  TDLHAIV+EQ 
Sbjct: 305  YPLSTLELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHAIVREQV 364

Query: 1945 GHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELVV 1766
             HP WG+YA +LL P   LWRNPS+GGHDDKAHPPIHPTKFS GE+ WS DH RLYELVV
Sbjct: 365  EHPVWGAYAHRLLTPEERLWRNPSNGGHDDKAHPPIHPTKFSRGENNWSPDHNRLYELVV 424

Query: 1765 RHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFGQ 1586
            RHFLAC SQPAVG ETTVEIDIAGE F+ASGRV++AKNYLDVYRF+SWGG+++P Y  GQ
Sbjct: 425  RHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLPTYNIGQ 484

Query: 1585 QFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTR 1406
            QF PTTLTLDSGVTR           SCMDKAGIGTDATMHDHIKKLLDR YATKD NTR
Sbjct: 485  QFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKDENTR 544

Query: 1405 FSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACFL 1226
            FSPTNLGEALVMGYD+MGYELWKPYLRSMME DMK+VS GTK KS+VLE+CLQQMKACFL
Sbjct: 545  FSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSQVLESCLQQMKACFL 604

Query: 1225 DARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVGC 1046
            DARVN+ KLL+AM  FF RSNRP  + Q+ + ++VRPC AC ES+M LKQ+ +G+FMVGC
Sbjct: 605  DARVNKAKLLDAMGTFFARSNRPVNETQNPI-EVVRPCAACRESEMVLKQKQNGEFMVGC 663

Query: 1045 LGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIGG 866
              +PQCRNVVWLPGS SEA+VT QVC  CTPGPV+ IQ KFR+ +IPPN+D DHLGCIGG
Sbjct: 664  RSYPQCRNVVWLPGSLSEASVTNQVCPICTPGPVYKIQFKFRRRDIPPNFDVDHLGCIGG 723

Query: 865  CDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQSACIHCRQTG--HSSN 692
            CD+ L++L EI R GSR+  A  A   RGQT   +   +G  RQ    + R  G  ++ N
Sbjct: 724  CDDILKELTEISRFGSRSQAATPA---RGQT--PNGVRQGPPRQDLHTNFRPAGQLNNEN 778

Query: 691  DCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNF 512
                                S    + C  CG  C  R ANT  N+GRKFY C+   C F
Sbjct: 779  PSVMHSQGFRSTHTQNQSNTSDAGQVLCTSCGELCISRIANTEANRGRKFYKCEDPGCGF 838

Query: 511  FVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPI 332
            F WED ++N+T                                G+NT   MFVSATGDP 
Sbjct: 839  FKWEDELDNATP-RGRRGRGSSRQAPASAGRRGGAQARGRRGRGRNTDGGMFVSATGDP- 896

Query: 331  SGRCYVCGDPSHFANVCPNR 272
            S  C+ CGDPSHFAN CPNR
Sbjct: 897  SRCCFTCGDPSHFANACPNR 916


>ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
            lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein
            ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score = 1276 bits (3301), Expect = 0.0
 Identities = 628/921 (68%), Positives = 717/921 (77%), Gaps = 3/921 (0%)
 Frame = -3

Query: 3025 GGRTIRVLNVAEKPSVAKAVSGILSRDQGLRVREGRSRYNKIFEFEYSIRGQRCNMLVTS 2846
            GG  + VLNVAEKPSVAK+V+GILSR    R REGRSRYNKIFEF+Y+I GQ C ML+TS
Sbjct: 5    GGGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTS 63

Query: 2845 VTGHLMELEFEDRYRKWHSCDPADLYHATVRKSVPQDKLEIKRTLEEESRWCQWLVLWLD 2666
            V GHLMELEF +RYRKWHSCDPADLY A V K VP+DK +IK+TLEEE+R   WLVLWLD
Sbjct: 64   VIGHLMELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLD 123

Query: 2665 CDREGENIAFEVVEVCSAVNPNLNIWRARFSALIDREIHESVQNLIRPNQLFADAVDARQ 2486
            CDREGENIAFEVV+VC AV  NL I RA FSALIDR+IHE+VQNL  PNQLFA+AVDARQ
Sbjct: 124  CDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183

Query: 2485 EIDLRIGASFTRFQTMLLKDAFVIDFTGDDRSLVLSYGPCQFPTLGFVVERYWEIQAHEP 2306
            EIDLRIGASFTRFQTMLL+D F ID TG++RS V+SYGPCQFPTLGF+VERYWEIQAHEP
Sbjct: 184  EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEP 243

Query: 2305 EEFWMIDCSHTSEEGIATFNWMRGHMFDYTCAVIIYEMCVQEPTATVTKV-RDQQKLKYP 2129
            EEFW I+CSH SEEG+ATFNWMRGH+FDY  AVI+YEMCV+EPTATV  V   +++ KYP
Sbjct: 244  EEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYP 303

Query: 2128 PHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSARTDLHAIVQEQ 1949
            P+PLNTIELEKRASRYFR+SSEHTMKVAE+LYQAGFISYPRTETDSFS+RTDL A+V+EQ
Sbjct: 304  PYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLCAMVEEQ 363

Query: 1948 QGHPEWGSYAQQLLDPGTGLWRNPSDGGHDDKAHPPIHPTKFSTGESGWSQDHCRLYELV 1769
            + HP WGSYAQ+LL+P  GLWRNP +GGHDDKAHPPIHPTKFS+GES WS+DH  +YELV
Sbjct: 364  RRHPAWGSYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELV 423

Query: 1768 VRHFLACVSQPAVGGETTVEIDIAGELFSASGRVIIAKNYLDVYRFESWGGSMIPKYIFG 1589
            VRH+LACVSQPA   ETTVEIDIAGE FSASGR I+AKNYL+VYRFESWGGS+IP Y  G
Sbjct: 424  VRHYLACVSQPAKAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKG 483

Query: 1588 QQFTPTTLTLDSGVTRXXXXXXXXXXXSCMDKAGIGTDATMHDHIKKLLDRFYATKDANT 1409
            QQF PTTLTLDS VTR           SCMDKAGIGTDATMHDHIKKLLDR YATKDANT
Sbjct: 484  QQFIPTTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANT 543

Query: 1408 RFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSTGTKRKSEVLETCLQQMKACF 1229
            RFSPTNLGEALVMGYDDMGYELWKP LR++ME DM  VS G K K+EVLETCLQQMKACF
Sbjct: 544  RFSPTNLGEALVMGYDDMGYELWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMKACF 603

Query: 1228 LDARVNRVKLLEAMAIFFDRSNRPGGDEQSVVGDIVRPCGACHESDMTLKQRPDGKFMVG 1049
            LDARV + KLLEAM IFF+RSN     E    G+++R C  C+ESDM L++  DG FMVG
Sbjct: 604  LDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNFMVG 663

Query: 1048 CLGFPQCRNVVWLPGSTSEAAVTTQVCNSCTPGPVFMIQLKFRQMEIPPNYDTDHLGCIG 869
            C+ +PQCRN VWLPG T EA+VTT VC +C PGPV+ I  KFRQ+ IPP +D +HLGCIG
Sbjct: 664  CMNYPQCRNAVWLPGPTLEASVTTDVCQTCGPGPVYKILFKFRQIGIPPGFDVNHLGCIG 723

Query: 868  GCDETLRQLIEICRTGSRNTVAVNAARGRGQTTSSSNAHRGSTRQ-SACIHCRQTGHSSN 692
            GCD+ L+QLI+IC TGSR     + AR    T  S+N    +TRQ + CIHC+Q GH+S 
Sbjct: 724  GCDDILKQLIDICGTGSR-----SQARRAPGTVPSNNIQGSNTRQGNFCIHCQQRGHASA 778

Query: 691  DCXXXXXXXXXXXXXXXXXXSGETSIPCNICGTPCSVRTANTANNKGRKFYSCQIRECNF 512
            +C                  + E+++ CN CGT C +RTANT  N+GR+F+SC  + C+F
Sbjct: 779  NCPSRATAFRNSRLTATNPRNDESTVSCNTCGTQCVLRTANTEANRGRQFFSCPTQGCSF 838

Query: 511  FVWEDSINNSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNTIDAMFVSATGDPI 332
            F WEDSINNS+                                G+      FVSATG+P+
Sbjct: 839  FAWEDSINNSSGN----ATTGSNSGGSGRRGRGRGGRGGQSGGGRRNSGTSFVSATGEPV 894

Query: 331  SG-RCYVCGDPSHFANVCPNR 272
            SG RC+ CGDPSHFANVCPNR
Sbjct: 895  SGIRCFSCGDPSHFANVCPNR 915