BLASTX nr result
ID: Akebia25_contig00009001
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00009001
(3201 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 1055 0.0
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 1046 0.0
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 976 0.0
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 973 0.0
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 969 0.0
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 969 0.0
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 944 0.0
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 925 0.0
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 901 0.0
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 893 0.0
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 889 0.0
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 880 0.0
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 872 0.0
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 870 0.0
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 866 0.0
ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prun... 862 0.0
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 856 0.0
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 844 0.0
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 842 0.0
gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japo... 827 0.0
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 1055 bits (2727), Expect = 0.0
Identities = 564/989 (57%), Positives = 697/989 (70%), Gaps = 9/989 (0%)
Frame = -3
Query: 3010 IRGICEEQSLLSPDIRARRELSLLGEEASLQLLQRT-----RNLSDYIIYMAGVSDPVSS 2846
++ IC EQ P+ RR L+ LGEE++L+LL++ RNLS I YM G + +
Sbjct: 13 LQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIRNLSALINYMVGKAAQGDA 72
Query: 2845 QEXXXXXXXXXXXXXXXXXXXXXDTKLPFSNLEEPKPKGQMNLNXXXXXXXXXXXXXXXX 2666
P PK ++
Sbjct: 73 AS------------------------------HSPTPKHLIS----SPSSTPKKARRQAS 98
Query: 2665 XPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCI 2486
P L++LGELEFRKAFLILSY G K+ E+ +S + I +KNLPM FE+++W +G+K I
Sbjct: 99 SPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFI 158
Query: 2485 EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFA 2306
+E DR +S DWDS +T+IY C+V PDGSY FKGP+L+ K +THLQRVLGD+N+L V+FA
Sbjct: 159 KEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLN--KTRTHLQRVLGDENILLVKFA 216
Query: 2305 EEVVNRNDFN---RSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYF 2135
E+V +R+ N SNA Y IA EGI+VGLR+Y+FFVFKDGGKEEKKK+ TSS VKCYF
Sbjct: 217 EDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYF 275
Query: 2134 VRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHA 1955
V MES+A S K++HEAR +FMH H VSSVAKYMARFSLILSKT+KLDVD +
Sbjct: 276 VFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLS 326
Query: 1954 SVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEF 1775
+V+I I+D D DG ++ +ED + LI TDGTGFISEDLAL+CP N+ +G Y ++G
Sbjct: 327 TVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNS 386
Query: 1774 ERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRP 1595
+ PLLIQ RLFNNG AVKGT L+N+KLPP+TIQIRP
Sbjct: 387 D-------------------------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRP 421
Query: 1594 SMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNA 1415
SMIKV+TDPK DTQT NS+EI TSN+PR+ SYLS++LIA L+YGGVP EYFM LL +A
Sbjct: 422 SMIKVETDPKLSDTQTVNSVEINGTSNQPRR-SYLSKYLIALLSYGGVPNEYFMNLLKDA 480
Query: 1414 LEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGLK 1235
LE A SV +K AL VSLR+GEMDD +V RMIL GIP++EP+L + +S ++ EERKGL+
Sbjct: 481 LEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLR 540
Query: 1234 VGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATY 1055
VGKLPV++C+YLMGTADPTG L SD+VCIILD GQ+ G+VLVYKHPGLHFGDIHVL ATY
Sbjct: 541 VGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATY 600
Query: 1054 VKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPWKRP 875
V+ LE VGNAKYAIFFP KGPRSLADEMANSDFDGDMYWVSRN QLLQYF+ SEPW R
Sbjct: 601 VEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRK 660
Query: 874 HSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECA 695
S + V ++PTDFS DELE+ LFQ FLT RF S+ +GMAAD+WL FMDR+LTL D+C+
Sbjct: 661 RSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCS 720
Query: 694 AEKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSILGLI 515
EK +K KML+L DIYYDALDA K+G KV V ELKA+KFPHFM R +SY+S SILG I
Sbjct: 721 DEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQI 780
Query: 514 YDKVDSFQATELPSKEVWKLPCFSGEA-PVSCLKSWKDHYDHYRNEMTHALKLDSESRQV 338
YD V+SFQ +KE+W+LP F+ +A P +CL+SWKD YD YR+EM AL+ E++
Sbjct: 781 YDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDE 840
Query: 337 AADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVA 158
A E+I KYKQ LYGAAEFEES R E+IF+EALAIY ++Y++ V C+F WRVA
Sbjct: 841 YAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVA 900
Query: 157 GRALCMLHASNQDKDTIVCVKSVLREVLN 71
GRALC L+ + ++VCV SVLR+V N
Sbjct: 901 GRALCKLYTVKLGEKSMVCVPSVLRQVFN 929
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 1046 bits (2705), Expect = 0.0
Identities = 565/997 (56%), Positives = 701/997 (70%), Gaps = 17/997 (1%)
Frame = -3
Query: 3010 IRGICEEQSLLSPDIRARRELSLLGEEASLQLLQRT-----RNLSDYIIYMAGVSDPVSS 2846
++ IC EQ P+ RR L+ LGEE++L+LL++ RNLS I YM G + +
Sbjct: 13 LQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIRNLSALINYMVGKAAQGDA 72
Query: 2845 QEXXXXXXXXXXXXXXXXXXXXXDTKLPFSNLEEPKPKGQMNLNXXXXXXXXXXXXXXXX 2666
P PK ++
Sbjct: 73 AS------------------------------HSPTPKHLIS----SPSSTPKKARRQAS 98
Query: 2665 XPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCI 2486
P L++LGELEFRKAFLILSY G+ + E+ +S + I +KNLPM FE+++W +G+K I
Sbjct: 99 SPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFI 158
Query: 2485 EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFK--------GPHLHLQKQKTHLQRVLGDD 2330
+E DR +S DWDS +T+IY C+V PDGSY FK GP+L+ K +THLQRVLGD+
Sbjct: 159 KEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLN--KTRTHLQRVLGDE 216
Query: 2329 NVLDVRFAEEVVNRNDFN---RSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLT 2159
N+L V+FAE+V +R+ N SNA Y IA EGI+VGLR+Y+FFVFKDGGKEEKKK+ T
Sbjct: 217 NILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT 276
Query: 2158 SSPVKCYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKT 1979
SS VKCYFV MES+A S K++HEAR +FMH H VSSVAKYMARFSLILSKT
Sbjct: 277 SS-VKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKT 326
Query: 1978 LKLDVDHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKG 1799
+KLDVD ++V+I I+D D DG ++ +ED + LI TDGTGFISEDLAL+CP N+ +G
Sbjct: 327 VKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRG 386
Query: 1798 HYSSHGEFERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLP 1619
Y ++G +S++ S PLLIQ RLFNNG AVKGT L+N+KLP
Sbjct: 387 KYMNNG--------------NSDVCDSRY-----PLLIQCRLFNNGCAVKGTLLLNRKLP 427
Query: 1618 PKTIQIRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREY 1439
P+TIQIRPSMIKV+TDPK DTQT NS+EI TSN+PR+ SYLS++LIA L+YGGVP EY
Sbjct: 428 PRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRR-SYLSKYLIALLSYGGVPNEY 486
Query: 1438 FMELLMNALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLL 1259
FM LL +ALE A SV +K AL VSLR+GEMDD +V RMIL GIP++EP+L + +S ++
Sbjct: 487 FMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMV 546
Query: 1258 KEERKGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGD 1079
EERKGL+VGKLPV++C+YLMGTADPTG L SD+VCIILD GQ+ G+VLVYKHPGLHFGD
Sbjct: 547 NEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGD 606
Query: 1078 IHVLTATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQ 899
IHVL ATYV+ LE VGNAKYAIFFP KGPRSLADEMANSDFDGDMYWVSRN QLLQYF+
Sbjct: 607 IHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFR 666
Query: 898 PSEPWKRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRV 719
SEPW R S + V ++PTDFS DELE+ LFQ FLT RF S+ +GMAAD+WL FMDR+
Sbjct: 667 ASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRL 726
Query: 718 LTLGDECAAEKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYY 539
LTL D+C+ EK +K KML+L DIYYDALDA K+G KV V ELKA+KFPHFM R +SY+
Sbjct: 727 LTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYH 786
Query: 538 SKSILGLIYDKVDSFQATELPSKEVWKLPCFSGEA-PVSCLKSWKDHYDHYRNEMTHALK 362
S SILG IYD V+SFQ +KE+W+LP F+ +A P +CL+SWKD YD YR+EM AL+
Sbjct: 787 STSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQ 846
Query: 361 LDSESRQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGK 182
E++ A E+I KYKQ LYGAAEFEES R E+IF+EALAIY ++Y++ V
Sbjct: 847 HGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSY 906
Query: 181 CSFAWRVAGRALCMLHASNQDKDTIVCVKSVLREVLN 71
C+F WRVAGRALC L+ + ++VCV SVLR+V N
Sbjct: 907 CNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 943
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 976 bits (2523), Expect = 0.0
Identities = 534/994 (53%), Positives = 674/994 (67%), Gaps = 16/994 (1%)
Frame = -3
Query: 3010 IRGICEEQSLLSPDIRARRELSLLGEEASLQLLQRTRN------LSDYIIYMAGVSDPVS 2849
I I EQ+ L PD ARR L+ LGE+A+L +L+ + S YI Y+ +
Sbjct: 23 ISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVKKRNNNG 82
Query: 2848 S--QEXXXXXXXXXXXXXXXXXXXXXDTKLPFSNLEEPKPKGQMNLNXXXXXXXXXXXXX 2675
S + LP + + P
Sbjct: 83 SPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQDYVVKQSPVADQQPRGSPMSSISHAMRH 142
Query: 2674 XXXXPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQ 2495
P ++LGELEFRKAFLILSY G+ LEE I+ D I+ M++L M FES++W +G+
Sbjct: 143 RASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGR 202
Query: 2494 KCIEETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDV 2315
K I + DR SL WDSG+T++Y C++ G+ TFKGP+L+ + +THLQR LGDDN+L V
Sbjct: 203 KNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN--QTRTHLQRELGDDNILLV 260
Query: 2314 RFAEEVVNR---NDFNRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVK 2144
+F EE+ N++N S + Y IA EGI VGLR Y FFVFKDGGKEEKKK ++SPVK
Sbjct: 261 KFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 320
Query: 2143 CYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDV 1964
CYFVRMES+A ID YI S K++HEAR +FMHV TVSSVA YM+R SLILSKT+KL+V
Sbjct: 321 CYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEV 380
Query: 1963 DHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSH 1784
D + ++I+ IED C D DG ++ +DGEALIHTDGTGFISEDLALKCP VYK ++
Sbjct: 381 DFSRINIERIEDEPCRDKDGNVV-YKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 439
Query: 1783 GEFERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQ 1604
ER++D E E S++ ++ SH EPPLL+Q RLF NG AVKGT L+NKKLPP+TIQ
Sbjct: 440 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 499
Query: 1603 IRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELL 1424
IRPSMIKV D D QT NSLE+V TSN+PRKT YLSR LIA L+YGGVP +F+++L
Sbjct: 500 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT-YLSRNLIALLSYGGVPEIFFLDIL 558
Query: 1423 MNALEAAQSVHYNKSEALTVSLRYGEMD-DFLVPRMILCGIPLNEPYLQYRMSVLLKEER 1247
NAL+ A+ V NK AL VS YG MD DF RMIL GI L+EPYLQ+R+S+L+KEE+
Sbjct: 559 RNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEK 618
Query: 1246 KGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQIS-GKVLVYKHPGLHFGDIHV 1070
K L+ GKLPV+E YYLMGT DPTG+L S++VCIIL GQ+S KVLVY++PGLHFGDIHV
Sbjct: 619 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHV 678
Query: 1069 LTATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSE 890
L ATYVK+LE VG +KYAIFFP GPRSLADE+A DFDGDMY+VSRNP+LL++F+ SE
Sbjct: 679 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 738
Query: 889 PWKRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTL 710
W S +++P DFS +ELE+ LF+ FL RF SN +AAD W + MDR LTL
Sbjct: 739 RWMST-SKNLSANKRPIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTL 797
Query: 709 GDECAAEKCRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPHFMKR--ANSYY 539
GDE A EK +KE ML+L++IYYDALDA K+G KVEVP +LK +KFP +M+R + S+
Sbjct: 798 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFE 857
Query: 538 SKSILGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKL 359
S S+LG IY+ V S++A + E+WKLPCF P +C+ WK +YD YR EM A+
Sbjct: 858 STSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDK 917
Query: 358 DSESRQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKC 179
+ R+ AA+ +I+KYKQ LYGAAEFE+S R EEI+NEALAIY I+YD A V C
Sbjct: 918 CTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYC 977
Query: 178 SFAWRVAGRALCMLHASNQDKDTIVCVKSVLREV 77
SFAWRVAG AL +A Q +++C SVLRE+
Sbjct: 978 SFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1011
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 973 bits (2516), Expect = 0.0
Identities = 537/1004 (53%), Positives = 679/1004 (67%), Gaps = 26/1004 (2%)
Frame = -3
Query: 3010 IRGICEEQSLLSPDIRARRELSLLGEEASLQLLQRTRN------LSDYIIYMAGVSD--- 2858
I I EQ+ L PD ARR L+ LGE+A+L +L+ + S YI Y+ +
Sbjct: 23 ISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVKKRNNNG 82
Query: 2857 ---------PVSSQEXXXXXXXXXXXXXXXXXXXXXDTKLPFSNLEEPKPKGQMNLNXXX 2705
P S Q+ K S + + +P+G
Sbjct: 83 SPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQ--SPVADQQPRGS------P 134
Query: 2704 XXXXXXXXXXXXXXPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEF 2525
P ++LGELEFRKAFLILSY G+ LEE I+ D I+ M++L M F
Sbjct: 135 MSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARF 194
Query: 2524 ESQLWRLVGQKCIEETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQR 2345
ES++W +G+K I + DR SL WDSG+T++Y C++ G+ TFKGP+L+ + +THLQR
Sbjct: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN--QTRTHLQR 252
Query: 2344 VLGDDNVLDVRFAEEVVNR---NDFNRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEK 2174
LGDDN+L V+F EE+ N++N S + Y IA EGI VGLR Y FFVFKDGGKEEK
Sbjct: 253 ELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
Query: 2173 KKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSL 1994
KK ++SPVKCYFVRMES+A ID YI S K++HEAR +FMHV TVSSVA YM+R SL
Sbjct: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
Query: 1993 ILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPR 1814
ILSKT+KL+VD + ++I+ IED C D DG ++ +DGEALIHTDGTGFISEDLALKCP
Sbjct: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVV-YKDGEALIHTDGTGFISEDLALKCPT 431
Query: 1813 NVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLV 1634
VYK ++ ER++D E E S++ ++ SH EPPLL+Q RLF NG AVKGT L+
Sbjct: 432 YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
Query: 1633 NKKLPPKTIQIRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGG 1454
NKKLPP+TIQIRPSMIKV D D QT NSLE+V TSN+PRKT YLSR LIA L+YGG
Sbjct: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT-YLSRNLIALLSYGG 550
Query: 1453 VPREYFMELLMNALEAAQSVHYNKSEALTVSLRYGEMD-DFLVPRMILCGIPLNEPYLQY 1277
VP +F+++L NAL+ A+ V NK AL VS YG MD DF RMIL GI L+EPYLQ+
Sbjct: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQH 610
Query: 1276 RMSVLLKEERKGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQIS-GKVLVYKH 1100
R+S+L+KEE+K L+ GKLPV+E YYLMGT DPTG+L S++VCIIL GQ+S KVLVY++
Sbjct: 611 RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRN 670
Query: 1099 PGLHFGDIHVLTATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNP 920
PGLHFGDIHVL ATYVK+LE VG +KYAIFFP GPRSLADE+A DFDGDMY+VSRNP
Sbjct: 671 PGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
Query: 919 QLLQYFQPSEPWKRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSW 740
+LL++F+ SE W S +++P DFS +ELE+ LF+ FL RF SN +AAD W
Sbjct: 731 ELLKHFKESERWMST-SKNLSANKRPIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
Query: 739 LSFMDRVLTLGDECAAEKCRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPHF 563
+ MDR LTLGDE A EK +KE ML+L++IYYDALDA K+G KVEVP +LK +KFP +
Sbjct: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
Query: 562 MKR--ANSYYSKSILGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHY 389
M+R + S+ S S+LG IY+ V S++A + E+WKLPCF P +C+ WK +YD Y
Sbjct: 850 MRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQY 909
Query: 388 RNEMTHALKLDSESRQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDY 209
R EM A+ + R+ AA+ +I+KYKQ LYGAAEFE+S R EEI+NEALAIY I+YD
Sbjct: 910 RWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDL 969
Query: 208 AKKINDVGKCSFAWRVAGRALCMLHASNQDKDTIVCVKSVLREV 77
A V CSFAWRVAG AL +A Q +++C SVLRE+
Sbjct: 970 AASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 969 bits (2505), Expect = 0.0
Identities = 514/872 (58%), Positives = 638/872 (73%), Gaps = 10/872 (1%)
Frame = -3
Query: 2659 HLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVG--QKCI 2486
HL++LGELEFRKAFLILSY G K LEE +SVD I+ K+LPM FES++W G + I
Sbjct: 16 HLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRDYI 75
Query: 2485 EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFA 2306
+E DR K LDWDSG+T+IY C+VDPDGSY FKGP+L K + LQR LGDDN+L V+F
Sbjct: 76 KEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYL--SKLRNVLQRTLGDDNILMVKFG 133
Query: 2305 EEVVNRNDFNRSN----AGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCY 2138
E +R+ +RS + Y + EGI+VGLR Y+FFVFKDGGKEEKKK T+SPVKC+
Sbjct: 134 EVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCF 193
Query: 2137 FVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDH 1958
FVRMES ASID + I S K+I +ARSVFMHV +SS++ YMARFSLILSKT+ L+VD
Sbjct: 194 FVRMESVASID-NQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDL 252
Query: 1957 ASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGE 1778
+ V I TI D C D DG ++ DG+ LIHTDGTGFIS DLALKCP+N +KG
Sbjct: 253 SCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASN 312
Query: 1777 FERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIR 1598
ER E ++ E +PPLLIQFRLFNNGRAVKGTFLVNKKL +T+ IR
Sbjct: 313 IERLNVHNEVMEQYPECRNG-----DPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIR 367
Query: 1597 PSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMN 1418
PSMIKV+TDPK T + NSLEIV TS+RP+KT +LS+ LIA L+YGGVP E+FM ++ N
Sbjct: 368 PSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKT-FLSKNLIALLSYGGVPEEFFMGIVNN 426
Query: 1417 ALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGL 1238
ALE A + NK+ AL V+L YG+MDD +V MI CGIPL EPYLQ R+S+L+KEE+K L
Sbjct: 427 ALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSL 486
Query: 1237 KVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTAT 1058
K GK+PV E YYLMGTADPTG+L SD+VCIILD GQISG+VL+Y++PGLHFGDIH+L AT
Sbjct: 487 KGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKAT 546
Query: 1057 YVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPWKR 878
YV++LE VGNAKYAIFFP KGPRSLADEM+ DFDGDM++VSRNPQLL+ F+ +EPW
Sbjct: 547 YVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTP 606
Query: 877 PHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDEC 698
S V ++KP++FS +ELE LF+ FL RF S+T+G+AADSWL+ MDR+LTLG++C
Sbjct: 607 STSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDC 666
Query: 697 AAEKCRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPHFM--KRANSYYSKSI 527
A E +KE + L+DIYYDALDA K G+++EVP LKA+ FPHFM +Y S SI
Sbjct: 667 AEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSI 726
Query: 526 LGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKLDSES 347
LG IYDKV +++ +L S +VWKLPCF E L WK+ Y YR EM +ALK ES
Sbjct: 727 LGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES 786
Query: 346 RQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAW 167
A+E+I+KYK+ LY AAEF S R+ EEIF EA+A+Y++SY++AK VG CSFAW
Sbjct: 787 ND-KANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAW 845
Query: 166 RVAGRALCMLHA-SNQDKDTIVCVKSVLREVL 74
RVAG ALC L+ NQ + ++C S L+ +L
Sbjct: 846 RVAGLALCTLYVLKNQGERPMICSPSALKGIL 877
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 969 bits (2505), Expect = 0.0
Identities = 514/872 (58%), Positives = 638/872 (73%), Gaps = 10/872 (1%)
Frame = -3
Query: 2659 HLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVG--QKCI 2486
HL++LGELEFRKAFLILSY G K LEE +SVD I+ K+LPM FES++W G + I
Sbjct: 38 HLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRDYI 97
Query: 2485 EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFA 2306
+E DR K LDWDSG+T+IY C+VDPDGSY FKGP+L K + LQR LGDDN+L V+F
Sbjct: 98 KEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYL--SKLRNVLQRTLGDDNILMVKFG 155
Query: 2305 EEVVNRNDFNRSN----AGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCY 2138
E +R+ +RS + Y + EGI+VGLR Y+FFVFKDGGKEEKKK T+SPVKC+
Sbjct: 156 EVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCF 215
Query: 2137 FVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDH 1958
FVRMES ASID + I S K+I +ARSVFMHV +SS++ YMARFSLILSKT+ L+VD
Sbjct: 216 FVRMESVASID-NQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDL 274
Query: 1957 ASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGE 1778
+ V I TI D C D DG ++ DG+ LIHTDGTGFIS DLALKCP+N +KG
Sbjct: 275 SCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASN 334
Query: 1777 FERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIR 1598
ER E ++ E +PPLLIQFRLFNNGRAVKGTFLVNKKL +T+ IR
Sbjct: 335 IERLNVHNEVMEQYPECRNG-----DPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIR 389
Query: 1597 PSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMN 1418
PSMIKV+TDPK T + NSLEIV TS+RP+KT +LS+ LIA L+YGGVP E+FM ++ N
Sbjct: 390 PSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKT-FLSKNLIALLSYGGVPEEFFMGIVNN 448
Query: 1417 ALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGL 1238
ALE A + NK+ AL V+L YG+MDD +V MI CGIPL EPYLQ R+S+L+KEE+K L
Sbjct: 449 ALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSL 508
Query: 1237 KVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTAT 1058
K GK+PV E YYLMGTADPTG+L SD+VCIILD GQISG+VL+Y++PGLHFGDIH+L AT
Sbjct: 509 KGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKAT 568
Query: 1057 YVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPWKR 878
YV++LE VGNAKYAIFFP KGPRSLADEM+ DFDGDM++VSRNPQLL+ F+ +EPW
Sbjct: 569 YVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTP 628
Query: 877 PHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDEC 698
S V ++KP++FS +ELE LF+ FL RF S+T+G+AADSWL+ MDR+LTLG++C
Sbjct: 629 STSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDC 688
Query: 697 AAEKCRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPHFM--KRANSYYSKSI 527
A E +KE + L+DIYYDALDA K G+++EVP LKA+ FPHFM +Y S SI
Sbjct: 689 AEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSI 748
Query: 526 LGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKLDSES 347
LG IYDKV +++ +L S +VWKLPCF E L WK+ Y YR EM +ALK ES
Sbjct: 749 LGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES 808
Query: 346 RQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAW 167
A+E+I+KYK+ LY AAEF S R+ EEIF EA+A+Y++SY++AK VG CSFAW
Sbjct: 809 ND-KANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAW 867
Query: 166 RVAGRALCMLHA-SNQDKDTIVCVKSVLREVL 74
RVAG ALC L+ NQ + ++C S L+ +L
Sbjct: 868 RVAGLALCTLYVLKNQGERPMICSPSALKGIL 899
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 944 bits (2440), Expect = 0.0
Identities = 514/991 (51%), Positives = 673/991 (67%), Gaps = 15/991 (1%)
Frame = -3
Query: 3001 ICEEQSLLSPDIRARRELSLLGEEASLQLL-----QRTRNLSDYIIYMAG----VSDPVS 2849
IC QS+ +RAR L+ +GE +++ LL Q+ R+ S +IIYM D +S
Sbjct: 35 ICRYQSVQPASMRAREMLASIGESSAMNLLNWISTQKIRDFSAFIIYMVKNMNRPPDVLS 94
Query: 2848 SQEXXXXXXXXXXXXXXXXXXXXXDTKLPFSNLEEPKPKGQMNLNXXXXXXXXXXXXXXX 2669
S + NLE N
Sbjct: 95 STDDVCECAP---------------------NLEPSSLMNDFRCNTYGSNEFQFRK---- 129
Query: 2668 XXPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKC 2489
+LGELEFRKAFLIL+Y GK+++++ +S++ I++ K+L M FE ++WR VG++
Sbjct: 130 ------ALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYEVWRTVGERY 183
Query: 2488 IEETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRF 2309
+TDR ++LDWDSG+ Y+C+VDP G+++FKGP L + +THL+RVLGDD VL V+F
Sbjct: 184 ASQTDR-RNLDWDSGKAENYQCHVDPVGNFSFKGPFL--ESTQTHLRRVLGDDKVLTVKF 240
Query: 2308 AEEVVN--RNDFN--RSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKC 2141
AEE+V+ R +FN RS ++ IA +GI VGLRRY FFVFKDGGKEEK+K+ ++ VKC
Sbjct: 241 AEEMVDERRGEFNLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKC 300
Query: 2140 YFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVD 1961
YFV M+S+A D PYI SNK+I EARS+FM VHTV ++AKYMARFSLILSKT+KL+VD
Sbjct: 301 YFVCMKSDAESDMHTPYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVD 360
Query: 1960 HASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHG 1781
SV+I+ I D CLD I+ +++G+ LIHTDGTGFISEDL K +N++K Y
Sbjct: 361 LGSVNIERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQK 420
Query: 1780 EFERNLDCIEFEDKSSELTKSTSHIR-EPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQ 1604
+ E L+ +E KS L + ++ + LLIQFRLF +G AVKGT LVNK LPP TIQ
Sbjct: 421 KVETCLNGMELNAKSV-LDEEIKYVSGDLHLLIQFRLFYDGCAVKGTVLVNKLLPPNTIQ 479
Query: 1603 IRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELL 1424
+RPSM+KV+ D + NS E+V TSNRPR + LSR+LI L++GGVP+ FM L+
Sbjct: 480 VRPSMVKVERDTDFSRLPSFNSFEMVGTSNRPRGAA-LSRYLITLLSHGGVPKSCFMFLI 538
Query: 1423 MNALEAAQSVHYNKSEALTVSLRYGEM-DDFLVPRMILCGIPLNEPYLQYRMSVLLKEER 1247
AL+ Q+V Y+K ALT +++Y E+ D+ LV RMI CG+PL EPYLQ+R+S+L+KEER
Sbjct: 539 QAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRLSILMKEER 598
Query: 1246 KGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVL 1067
KGLK GK+ + YYLMGTADPTG L ++VCIILD GQISGKVLVY+HPGLHFGDIHV
Sbjct: 599 KGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLHFGDIHVF 658
Query: 1066 TATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEP 887
TATY++DL IVGNAK+AIFF T+GPRS ADE+AN DFDGDMYW+S NP+LL YF+ P
Sbjct: 659 TATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELLHYFKAGPP 718
Query: 886 WKRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLG 707
W+R S K +KP ++S DELE LF FL +RF S AADSWL +MDR+LTLG
Sbjct: 719 WERSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWLVYMDRLLTLG 778
Query: 706 DECAAEKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSI 527
DECA EK + +KML+L D+YY+A+DA K+GKKVEVP +LK +++PHFM+R Y S SI
Sbjct: 779 DECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFMERTYQYTSTSI 838
Query: 526 LGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKLDSES 347
LG IYD V S Q ++P +++ LPCF E S ++ WK Y YR+EM AL ++
Sbjct: 839 LGQIYDLVASAQ-MDVPCEDIELLPCFLEEVEPSGMEKWKGLYAQYRDEMNKALS-STDQ 896
Query: 346 RQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAW 167
++ ADE+IQ YK+ LYGA E+EE R +EEIF EA IY ISY YAK+ +D+ KC FAW
Sbjct: 897 KKSNADEVIQNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAW 956
Query: 166 RVAGRALCMLHASNQDKDTIVCVKSVLREVL 74
+VAG ALC LHA Q K++I C+ SVL+E+L
Sbjct: 957 KVAGCALCELHALKQKKNSITCLSSVLQELL 987
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 925 bits (2390), Expect = 0.0
Identities = 497/872 (56%), Positives = 620/872 (71%), Gaps = 10/872 (1%)
Frame = -3
Query: 2659 HLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVG--QKCI 2486
HL++LGELEFRKAFLIL+Y G K LEE +S D I+ K+LPM FES++W G + I
Sbjct: 16 HLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKIWDAFGCRRDYI 75
Query: 2485 EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFA 2306
+E DR K LDWDSG+ +IY C+VDPDGSY FKGP+L KQ+ LQR LGDDN+L V+F
Sbjct: 76 KEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYL--SKQRNVLQRTLGDDNILMVKFE 133
Query: 2305 EEVVNRNDFNRSN----AGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCY 2138
E R + S A Y + EGI+VGLR Y+FFVFKDGGKEEKKK T+SPVKC+
Sbjct: 134 EVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCF 193
Query: 2137 FVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDH 1958
FV MES AS+D + I K+I +ARSVFMHV +SS++ YMARFSLILSKT+ L+VD
Sbjct: 194 FVCMESVASVD-NQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDL 252
Query: 1957 ASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGE 1778
+ V I I D C D DG + DG+ LIHTDGTGFIS DLALKCP+N KG
Sbjct: 253 SFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASN 312
Query: 1777 FERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIR 1598
ER + ++ E H +PPLLIQFRLFNNGRAVKGTFLVNKKL +T+ +R
Sbjct: 313 IER----LRVHNEVMEQNPECLH-GDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVR 367
Query: 1597 PSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMN 1418
PSMIKV+TDPK +T + NSLEIV TS RP+KT +LS+ LIA L+YGGVP E+FM +L N
Sbjct: 368 PSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKT-FLSKNLIALLSYGGVPEEFFMGILNN 426
Query: 1417 ALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGL 1238
ALE A + NK AL V+L YG+MDD +V MI CGIPL EPYLQ+ +S+L KEE+K L
Sbjct: 427 ALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKKSL 486
Query: 1237 KVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTAT 1058
K GK+PV E YYLMGTADPTG+L SD+VCIILD GQ+SG+VLVY++PGLHFGDIH+L AT
Sbjct: 487 KGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKAT 546
Query: 1057 YVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPWKR 878
YV++LE VGNAKYAIFFP KGPRSLADEM+ DFDGDM++VSRNP+LL+ F+ +EPW
Sbjct: 547 YVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENFKQTEPWTP 606
Query: 877 PHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDEC 698
S V ++KP++FS +ELE LF+ FL RF S T+G+AADSWL+ MDR+LTLG++C
Sbjct: 607 STSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGNDC 666
Query: 697 AAEKCRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPHFMKR--ANSYYSKSI 527
E VK+ + L+DIYYDALDA K G+K+EVP LKA+ FPHFM++ +Y S SI
Sbjct: 667 TEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSI 726
Query: 526 LGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKLDSES 347
LG IYDKV +++ +L S SCL WK Y YR EM +AL+ E
Sbjct: 727 LGKIYDKVKAYEDMDL-----------SSNVHESCLVKWKGLYGQYRTEMRNALQAGKEK 775
Query: 346 RQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAW 167
A+E+I+KYK+ LY AAEF S R+ EEIF EA A+Y+++Y++AK+ VGKC FAW
Sbjct: 776 NN-EANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAW 834
Query: 166 RVAGRALCMLHA-SNQDKDTIVCVKSVLREVL 74
RVAG ALC L+ NQ++ ++C S L+ +L
Sbjct: 835 RVAGLALCTLYVLKNQEERPLICSPSALKGIL 866
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 901 bits (2329), Expect = 0.0
Identities = 468/867 (53%), Positives = 618/867 (71%), Gaps = 7/867 (0%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEET 2477
L++LGELEF+KAFL+LSY ++L + + D I+ K+LPM +E+ +W +G++ +T
Sbjct: 141 LVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEAAVWDRLGRRYCPQT 200
Query: 2476 DRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFAEEV 2297
DR + L WDSG+T+ Y+C+V PDGSYTFKGP L + THL +VLGD+NVL V+FA+
Sbjct: 201 DR-RMLQWDSGKTHYYQCHVAPDGSYTFKGPLL--EHTGTHLHKVLGDENVLTVKFADVP 257
Query: 2296 VNRNDFNRSNA-GYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMES 2120
N + ++ Y+ IA GI +GLRRYQFFVFKDGGKEEKKK L++ VKCYF+R +S
Sbjct: 258 KNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDS 317
Query: 2119 NASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHID 1940
AS D E PYIF+ KSIHEAR FMHVH ++A YMARFSLILSKT L+VD + D
Sbjct: 318 TASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFD 377
Query: 1939 TIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLD 1760
I+DI C D DG+ + +++ + IH+DGTG+ISEDLA CP N++KG
Sbjct: 378 PIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK------------ 425
Query: 1759 CIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRPSMIKV 1580
C+ E+ + +PPLLIQFR+F +G AVKGTFL+NKKL P+T+Q+RPSMIKV
Sbjct: 426 CLRSENIQEACNQ------DPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKV 479
Query: 1579 DTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNALEAAQ 1400
DP + T N+LE+V+TSN PR+T LS+ L+A L+YGG+P E+F+++L+N LE ++
Sbjct: 480 SKDPSLSNFSTFNALEVVTTSNPPRRTK-LSKNLVALLSYGGIPNEFFLDILLNTLEESK 538
Query: 1399 SVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGLKVGKLP 1220
S+ YNK AL V+L YGEMDD +MIL GIPL+EP+L+ +S+LLK E+ LK G+LP
Sbjct: 539 SIFYNKHAALNVALNYGEMDDQNAAQMILVGIPLDEPHLKNHLSILLKTEKNDLKAGRLP 598
Query: 1219 VSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATYVKDLE 1040
V+E YYLMGT DPTG L D+VC+IL+SGQISG+VLVY++PGLHFGDIH+L ATYVK LE
Sbjct: 599 VTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALE 658
Query: 1039 LIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW-KRPHSAK 863
VGN+KYA+FFP KGPRSL DE+A DFDGDMY++SRNP+LL++F+PSEPW +K
Sbjct: 659 EYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSK 718
Query: 862 FVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECAAEKC 683
+ P+ S +ELE LF+ FL A F SN +G+AADSWL+ MDR+L LGDE A EK
Sbjct: 719 SNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKA 778
Query: 682 RVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSILGLIYDKV 503
+K+KML+L+DIYYDALDA K G KV +PNEL+ D FPH+M+R + S SILGLIYD V
Sbjct: 779 EMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKKFKSTSILGLIYDFV 838
Query: 502 DSFQATE--LPSKEVWKLPCFSGEAPVS--CLKSWKDHYDHYRNEMTHALKLDSESRQVA 335
S Q TE PS E+ KLPCF E PVS ++ + YD+YR+EMT A+K D + +
Sbjct: 839 KS-QTTEEPTPSSEISKLPCFEDE-PVSEFHMEKCRRWYDNYRSEMTQAMKTDKDE---S 893
Query: 334 ADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVAG 155
A+E+IQ+YKQ+ YGAA FE+S + EE++ +AL +Y+I YDYA V KC F W+VAG
Sbjct: 894 ANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAG-VSKCGFVWKVAG 952
Query: 154 RALCMLH-ASNQDKDTIVCVKSVLREV 77
LC + + ++VC SVL+E+
Sbjct: 953 PVLCRFYLMKKMQEKSLVCAPSVLKEL 979
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 893 bits (2307), Expect = 0.0
Identities = 484/876 (55%), Positives = 613/876 (69%), Gaps = 17/876 (1%)
Frame = -3
Query: 2653 LSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEETD 2474
++LGELEFRK L+ K P + +Q+ R +G + + T
Sbjct: 207 VALGELEFRKITLL---------------------KKRPWLLYGNQVERWLGWELVSVT- 244
Query: 2473 RSKSL--------DWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLD 2318
S+SL DWD +T+IY C+V DGS FKGP L+ KTHLQRVLGDDNVL
Sbjct: 245 HSESLPSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLN--NTKTHLQRVLGDDNVLM 302
Query: 2317 VRFAEEVVNRNDFNRSNAG---YQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPV 2147
V+FAE+ + N S Y IA +GI +GLRRY FFVFKDGGKEEKKK+ T+S V
Sbjct: 303 VKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAV 362
Query: 2146 KCYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLD 1967
KCYFVRMES+A ID +PY SN+++ EARS+FMH H VSS+A YMARFSLILSKT+ L
Sbjct: 363 KCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLK 422
Query: 1966 VDHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSS 1787
+D ++V++ I DI C D G +I DG+ LIHTDGTGFISEDLAL+CP NV+KG
Sbjct: 423 IDLSTVNVQRIGDIPCKDIYGNVIYR-DGKPLIHTDGTGFISEDLALECPMNVFKGQAKH 481
Query: 1786 HGEFE---RNLDCIE-FEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLP 1619
+ + + + E F++K+ +LT +REPPLLIQFRLF NG AVKGTFL+NK+LP
Sbjct: 482 DADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFYNGLAVKGTFLLNKQLP 541
Query: 1618 PKTIQIRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREY 1439
P+TIQIR SMIKV+ DP + +T NSLE+V TSN P++T +LSR LIA LNYGGVPREY
Sbjct: 542 PRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRT-FLSRNLIALLNYGGVPREY 600
Query: 1438 FMELLMNALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLL 1259
FM +L++AL+ Q V +K AL VS+ GEMDDFLV RMIL GIPL+E YLQYR+SVLL
Sbjct: 601 FMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLL 660
Query: 1258 KEERKGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGD 1079
KEE+K LK G+L V ECYYLMGT DPT L S +VC+IL +GQI+GKVLVY++PGLHFGD
Sbjct: 661 KEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGD 720
Query: 1078 IHVLTATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQ 899
IHVLTA YV+ L +VGNAKYAIFF +KGPRS+ADE+A DFDGDMYWVSRN QLL+YF+
Sbjct: 721 IHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFR 780
Query: 898 PSEPWKRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRV 719
P EPW+ S + V ++KP +FS DELEN LF+ FL+ RF S +AAD+WL+ MD+
Sbjct: 781 PCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQF 840
Query: 718 LTLGDECAAEKCRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPHFMKRA-NS 545
L LG+E E+ ++ K+LQL++IYYDALDA K GKK+EVP LKA PHFM+R NS
Sbjct: 841 LMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNS 900
Query: 544 YYSKSILGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHAL 365
Y S SILG I+D + +Q E+P+ EV KLPCF E P WK Y+ YR +M A+
Sbjct: 901 YVSTSILGQIFDTANMYQ-EEVPNIEVQKLPCFEEELPEYIFMKWKFLYELYRKDMVDAM 959
Query: 364 KLDSESRQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVG 185
+LD +++ +AA+ I+KYK+ LYGA E E S R EE++ EALAIY+++YD+A V
Sbjct: 960 QLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDHAMS-RSVR 1018
Query: 184 KCSFAWRVAGRALCMLHASNQDKDTIVCVKSVLREV 77
C FAW+VAG AL L+A + + C+ SV+RE+
Sbjct: 1019 NCGFAWKVAGSALFKLYAIKHSERSFHCLPSVMREI 1054
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 889 bits (2297), Expect = 0.0
Identities = 479/868 (55%), Positives = 601/868 (69%), Gaps = 6/868 (0%)
Frame = -3
Query: 2659 HLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEE 2480
HL +LGELE+R+ FLILSY G KL + I + I+ K+LPM FES +W +G+KCI
Sbjct: 547 HLAALGELEYRRQFLILSYAGGMKLRDLIVAEAIRHWKDLPMVMFESTVWEHLGRKCIST 606
Query: 2479 TDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFAEE 2300
DR DWDSG T++Y CYV+ DGSY FKGP+L+ + ++T LQ+ LGDDNVL V+FA+E
Sbjct: 607 EDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLY-KIRRTLLQKELGDDNVLMVKFAKE 665
Query: 2299 VVNRNDFNRSN--AGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRM 2126
V R + Y +A EGI VGLRRY+FFVFKDGG EEKKK+ TSSPVKCYFVR+
Sbjct: 666 EVQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGGNEEKKKNPTSSPVKCYFVRV 725
Query: 2125 ESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVH 1946
S+A+ID Y S+ +++EAR +FMH HT++S+ YMARFSLILSKT+ L D + V
Sbjct: 726 ASDAAIDKGVYYRLSHMTMYEARCLFMHAHTLASIDNYMARFSLILSKTMSLKADWSLVK 785
Query: 1945 IDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERN 1766
++ I++ CLD G I ++ + LIHTDGTGFISEDLAL CP+ KG + S +
Sbjct: 786 VEIIDEEYCLDESGNCIYRDE-KPLIHTDGTGFISEDLALLCPKIEAKGQWISDEHMKGL 844
Query: 1765 LDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRPSMI 1586
D E +D ++ EPPLLIQ RLF+NG A KGT LVNKKL P IQIRPSM+
Sbjct: 845 PDPDELDDTGKN--RAGLRTEEPPLLIQCRLFHNGSASKGTLLVNKKLQPNRIQIRPSML 902
Query: 1585 KVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNALEA 1406
KV TDP + QT NSLEIV TS PR T +LSR LIA L +GGVP E+FM++L ALE
Sbjct: 903 KVKTDPVISNNQTLNSLEIVGTSTPPRNT-HLSRILIALLVHGGVPEEFFMQILNKALED 961
Query: 1405 AQSVHYNKSEALTVSLRYGEMDD-FLVPRMILCGIPLNEPYLQYRMSVLLKEERKGLKVG 1229
+ V K AL V+ +YGEMDD FL MI GIPL E YL+YR+SVL+KEE L+ G
Sbjct: 962 SHGVFCKKRAALKVAEKYGEMDDNFLGRLMISFGIPLEESYLRYRLSVLMKEENNSLRKG 1021
Query: 1228 KLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATYVK 1049
+L + + Y LMGTADPTG L D+VC GQ+SGKVLVY++PGLH GDIHVL ATYVK
Sbjct: 1022 RLYIPDSYNLMGTADPTGTLKEDEVC----DGQLSGKVLVYRYPGLHIGDIHVLKATYVK 1077
Query: 1048 DLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW-KRPH 872
++E IVGNAKY IFF KGPRS+ADEM DFDGD+YWVSRNPQLL++++PSEPW +
Sbjct: 1078 EIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWIEASI 1137
Query: 871 SAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECAA 692
S K + P+D S ++LE+VLF+ FLT RF S + AAD+WL++MD LTLGD
Sbjct: 1138 STKKNPSRCPSDHSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIH 1197
Query: 691 EKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSILGLIY 512
EK VKEK+LQLVD+YY ALDA+K G KV+VP ELK FPH+M + SY S SILG IY
Sbjct: 1198 EKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGKNRSYPSTSILGSIY 1257
Query: 511 DKVDSFQATELPSKEVWKLPCF-SGEAPVSCLKSWKDHYDHYRNEMTHAL-KLDSESRQV 338
++VD Q + KEV KLP F E P +CL W + + YR EM AL D +S+
Sbjct: 1258 NRVDEHQTEDRSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQ 1317
Query: 337 AADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVA 158
+AD +I+KY++ LY A +FEES R EEI+NEA AIY + YD+AK++ +V CSFAWRVA
Sbjct: 1318 SADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVA 1377
Query: 157 GRALCMLHASNQDKDTIVCVKSVLREVL 74
G+ALC LHA N ++ V SVL E+L
Sbjct: 1378 GKALCQLHARNNNERFCTIVSSVLMEIL 1405
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 880 bits (2275), Expect = 0.0
Identities = 465/866 (53%), Positives = 613/866 (70%), Gaps = 6/866 (0%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEET 2477
L++LGELEF+KAFL+LSY ++L E ++ + I+ K+LPM +E+ +W +G+K +T
Sbjct: 145 LVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKDLPMVAYEAAVWDSLGRKFCPQT 204
Query: 2476 DRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFAEEV 2297
D + L WDSG+T+ Y+C+V PDGSYTFKGP L + THL +VLGD+NVL V+FA
Sbjct: 205 DE-RVLQWDSGKTHYYQCHVAPDGSYTFKGPLL--ESTGTHLHKVLGDENVLTVKFANVQ 261
Query: 2296 VNRNDF-NRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMES 2120
N + + + S Y+ IA GI VGLRRY+FFVFKDGGK++K K +++ KCYF+R +S
Sbjct: 262 KNSSTYCSDSYFTYKGIAKNGIMVGLRRYKFFVFKDGGKDDKNKDVSTKRAKCYFIRTDS 321
Query: 2119 NASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHID 1940
ASID EKPYIFS KSIHEAR FMHVHT+ S+A YMARFSLILSKT KL+VD V+ +
Sbjct: 322 TASIDMEKPYIFSGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTGVNFE 381
Query: 1939 TIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLD 1760
I+DI C D DG+ + +++ + IH+DGTG+ISEDLA CP N+YKG
Sbjct: 382 IIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIYKGK------------ 429
Query: 1759 CIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRPSMIKV 1580
C+ DK E +EPPLLIQFR+F NG A+KGTFL+NKK+P +T+Q+RPSMIKV
Sbjct: 430 CLR-SDKIKEACG-----QEPPLLIQFRMFYNGYAIKGTFLLNKKIPSRTVQVRPSMIKV 483
Query: 1579 DTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNALEAAQ 1400
D + T N+LE+V+TS P++T LSR L+A L+YGG+P E+F+++L N LE ++
Sbjct: 484 LPDSLP-NISTFNTLEVVNTSFPPKRTK-LSRNLVALLSYGGIPDEFFLDILHNTLEESK 541
Query: 1399 SVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGLKVGKLP 1220
++ YNK AL +L YGEMDD +MIL GIPL+EP+L+ +S LK E+ LK G+LP
Sbjct: 542 AIFYNKRAALNAALSYGEMDDQNAAQMILAGIPLDEPHLKTCLSSFLKREKNDLKAGRLP 601
Query: 1219 VSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATYVKDLE 1040
V+E YYLMGT DPTG L D+VC+IL+SGQISG+VLVY++PGLHFGDIHVL ATYVK LE
Sbjct: 602 VTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHVLKATYVKALE 661
Query: 1039 LIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW-KRPHSAK 863
VGN+K+A+FFP KGPRSL DE+A DFDGD+Y++SRNP+LL++F+PSEPW +K
Sbjct: 662 EYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDIYFISRNPELLEHFKPSEPWVSLTPPSK 721
Query: 862 FVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECAAEKC 683
+ P FS +ELE LF+ FL A F SN +GMAADSWL+ MDR L LGDE A EK
Sbjct: 722 SNSARGPCQFSPEELEEELFEMFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADEKA 781
Query: 682 RVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSILGLIYDKV 503
+K+KML+L+DIYYDALDA K G KV +PNEL+ D FPH+M+R + S SILGLIYD V
Sbjct: 782 EMKQKMLELIDIYYDALDAPKKGAKVYLPNELRPDIFPHYMERDKKFKSTSILGLIYDFV 841
Query: 502 DSFQATELPS--KEVWKLPCFSGEAPVS--CLKSWKDHYDHYRNEMTHALKLDSESRQVA 335
S Q T+ PS E+ KLPCF E PVS +K + YD Y++EMTHA+ D+ ++
Sbjct: 842 QS-QTTKQPSPPSEINKLPCFEDE-PVSEFHMKECRRWYDEYKDEMTHAMNTDASNK--- 896
Query: 334 ADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVAG 155
+EII++ K+ YGAA FEES + EE++ +ALA+Y I YD+A V +C F W+VAG
Sbjct: 897 -NEIIERCKEDFYGAASFEESKKSLEELYPQALALYNIVYDHATHAG-VSRCGFVWKVAG 954
Query: 154 RALCMLHASNQDKDTIVCVKSVLREV 77
LC + + + T+V SVL+E+
Sbjct: 955 PVLCRFYLKKRHEKTLVSSPSVLKEI 980
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 872 bits (2253), Expect = 0.0
Identities = 460/873 (52%), Positives = 612/873 (70%), Gaps = 13/873 (1%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEET 2477
L++LGELEF+K FL+LSY + + + I+ D I+ K+LPM E+E+ +W +G+ +
Sbjct: 131 LVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLWKDLPMVEYEAAVWDRLGRHYCPQK 190
Query: 2476 DRSKSLDWDSGRTYIYRCYVDPDGSYTFK------GPHLHLQKQKTHLQRVLGDDNVLDV 2315
DR + L WDSG+T+ Y+C V P+GSYTFK GP L + THL +VLGDDNVL V
Sbjct: 191 DR-RMLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLL--EHTGTHLHKVLGDDNVLTV 247
Query: 2314 RFAEEVVNRNDFNRSNA-GYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCY 2138
+FA+ + + ++ + Y+ IA GI +GLRRYQFFVFKDGGKEEKKK L++ VKCY
Sbjct: 248 KFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCY 307
Query: 2137 FVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDH 1958
F+R +S A D + PYI + KSI+EAR FMHVH ++A YMARFSLILSKT L+VD
Sbjct: 308 FIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDM 367
Query: 1957 ASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGE 1778
+ D I+DI C D DG+ + +++ + IH+DGTG+ISEDLA CP N++KG
Sbjct: 368 TGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK------ 421
Query: 1777 FERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIR 1598
C+ E ++PPLLIQFR+F +G AVKGTFL+NKKL P+T+Q+R
Sbjct: 422 ------CLRSESIQEAC------YQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVR 469
Query: 1597 PSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMN 1418
PSMIKV DP + T N+LE+V+TSN P++T LS+ L+A L+YGG+P E+F+++L+N
Sbjct: 470 PSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTK-LSKNLVALLSYGGIPNEFFLDILLN 528
Query: 1417 ALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGL 1238
LE ++S+ YNK AL +L YGEMDD +MIL GIPL+EP+L+ +S+LLK E+ L
Sbjct: 529 TLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDL 588
Query: 1237 KVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTAT 1058
K GKLPV+E YYLMGT DPTG L D+VC+IL+SGQISG+VLVY++PGLHFGDIH+L AT
Sbjct: 589 KAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKAT 648
Query: 1057 YVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW-K 881
YVK LE VGN+K+A+FFP KGPRSL DE+A DFDGDMY++SRNP+LL+ F+PSEPW
Sbjct: 649 YVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVS 708
Query: 880 RPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDE 701
+K + P+ S +ELE LF+ FLTA F SN +G+AADSWL+ MDR L LGD+
Sbjct: 709 LTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDD 768
Query: 700 CAAEKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSILG 521
A EK +K+KML+L+DIYYDALDA K G KV +PN+LK D FPH+M+R + S SILG
Sbjct: 769 RAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKKFQSTSILG 828
Query: 520 LIYDKVDSFQATE--LPSKEVWKLPCFSGEAPVS--CLKSWKDHYDHYRNEMTHALKLDS 353
LI+D V S Q TE PS E+ KLPCF E PVS ++ + YD+YR EMT A+K D
Sbjct: 829 LIFDFVKS-QTTEEPSPSSEISKLPCFEDE-PVSEFHMQKCRLWYDNYRTEMTQAMKTDK 886
Query: 352 ESRQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSF 173
+ +A+E+IQ+YKQ+ YGAA FE+S + EE++ +ALA+Y+I YDYA V KC F
Sbjct: 887 DE---SANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRF 942
Query: 172 AWRVAGRALCMLHASNQ-DKDTIVCVKSVLREV 77
W+VAG LC + + + + +VC SVL+E+
Sbjct: 943 VWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKEL 975
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 870 bits (2249), Expect = 0.0
Identities = 475/993 (47%), Positives = 646/993 (65%), Gaps = 15/993 (1%)
Frame = -3
Query: 3010 IRGICEEQSLLSPDIRARRELSLLGEEASLQLLQR---TRNLSDYIIYMAGVSDPVSSQE 2840
I IC +Q+ D R L L GEE SL++L + TR + ++ + D ++ Q
Sbjct: 21 IESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRLSFAGFVNHMLDDINHQN 80
Query: 2839 XXXXXXXXXXXXXXXXXXXXXD--TKLPFSNLEEPKPKGQMNLNXXXXXXXXXXXXXXXX 2666
+ T+ S P+P L+
Sbjct: 81 NNNNNNNNNNNNNNNNSHSQPEPSTRQQTSPTRPPRPTPSSLLH---------------- 124
Query: 2665 XPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCI 2486
+LGELEFRKAFLILSY G++ LE I+ I+S+K+LPM +FE +W G+KCI
Sbjct: 125 -----ALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCI 179
Query: 2485 -EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRF 2309
+++DR DW+SGRT++Y+C+V PDG+ FKGP L Q +THLQ+ LGDDNVL V+F
Sbjct: 180 YDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPIL--QSTRTHLQKTLGDDNVLLVKF 237
Query: 2308 AEEVVNRN---DFNRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCY 2138
AE+ +N +NA Y EGI VGLR Y+FFVFKDGG EEK+K TSS VKCY
Sbjct: 238 AEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCY 297
Query: 2137 FVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTV-SSVAKYMARFSLILSKTLKLDVD 1961
FVRM+S S D YI SNK++ EAR++FMH H + ++ KYMARFSLILSKTLKL++D
Sbjct: 298 FVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNID 357
Query: 1960 HASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHG 1781
+V + I D C D +G I+ + + ++ TDGTGFIS DLAL CP NVYKG +
Sbjct: 358 LTTVSVQKIPDEYCKDANGNIMVDNEKPRIL-TDGTGFISRDLALLCPNNVYKGSNLENN 416
Query: 1780 EFERNLDCIEFEDKSSELTKSTS-HIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQ 1604
+ + +E ED S+ + ++ EPPLLIQ RLF+ G A+KGT LVN+KLPP+TIQ
Sbjct: 417 CIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQ 476
Query: 1603 IRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELL 1424
+RPSMIKV+ DP + Q+ NSLE+V+TSN+P++ YLS+ LIA L++GGVP E+FM+LL
Sbjct: 477 VRPSMIKVEKDPS-VHMQSINSLEVVTTSNKPKR-GYLSKHLIALLSFGGVPNEFFMDLL 534
Query: 1423 MNALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERK 1244
+ +E A V+ NK AL S+ GE D++ MILCGIPL+EP+L++ +S +EE+K
Sbjct: 535 RSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKK 594
Query: 1243 GLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLT 1064
L+ GKL + +C+YLMGT DPTG L +QVCII ++ QI G VLVY++PGLHFGDIH +
Sbjct: 595 KLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMD 654
Query: 1063 ATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW 884
ATYVK+LE VG++KY IFFP G RS+ADE+A DFDGD YWVS +PQLLQYF+ +PW
Sbjct: 655 ATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPW 714
Query: 883 KRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGD 704
+KP++FS +ELE LF+ FL RF S +GM+ +SW++ MDR+LTL +
Sbjct: 715 IENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTL-N 773
Query: 703 ECA--AEKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKS 530
C EK RVKE ML+L+DIYY+ALDA K+G+KV+VPN+L A+ FPH+M++ S+ S S
Sbjct: 774 NCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDKSFTSTS 833
Query: 529 ILGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKLDSE 350
ILGLIYD+V+ + ++ E+WKLPCF E P SCL+ WK Y+ YR +MT AL L +
Sbjct: 834 ILGLIYDEVEIWLENDMVG-EIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDK 892
Query: 349 SR-QVAADEIIQKYKQKLYG-AAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCS 176
S+ A E+ +KYK++ YG E E + +IFNEALA+Y +SY+YA +V +C
Sbjct: 893 SKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCG 952
Query: 175 FAWRVAGRALCMLHASNQDKDTIVCVKSVLREV 77
FAW++AG AL L+ Q++ + C SV+RE+
Sbjct: 953 FAWKIAGSALTRLYIIKQNEKALNCDPSVVREI 985
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 866 bits (2238), Expect = 0.0
Identities = 454/865 (52%), Positives = 598/865 (69%), Gaps = 5/865 (0%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEET 2477
+L+L ELEF+KAFL+LSY + L E +S D I+ K+LPM +E+ +W + + + +T
Sbjct: 148 ILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMVAYEAAVWDRLSRLELSQT 207
Query: 2476 DRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFAEEV 2297
SL+WDS +T+ Y+C+V DGSYTFKGP L + THL +VLGD+NVL V+FA+
Sbjct: 208 VERVSLEWDSEKTHYYQCHVASDGSYTFKGPLL--EPTGTHLHKVLGDENVLTVKFADVQ 265
Query: 2296 VNRNDFNRSN-AGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMES 2120
N + ++ + Y+ IA GI VGLRRYQFFVFKD GK EKKK +++ VKCYF+R +S
Sbjct: 266 KNSSTYSNDRYSAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKKKDFSTNGVKCYFIRTDS 325
Query: 2119 NASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHID 1940
A+ D K YIFS K+I+EAR FMHVHT+ S+AKYMARFSLILSKT KL+VD +
Sbjct: 326 TAANDMGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILSKTKKLEVDMTGITYQ 385
Query: 1939 TIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLD 1760
I++I C D + ++ +++ E +H+DGTG+ISEDLA CP N++KG S + +
Sbjct: 386 EIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIFKGKCLSKKNIQESCG 445
Query: 1759 CIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRPSMIKV 1580
++PPLLIQFR+F +G AVKGTFL+NKKLP +T+Q+RPSMIKV
Sbjct: 446 ------------------QDPPLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKV 487
Query: 1579 DTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNALEAAQ 1400
D + T NSLE+V+TSN P++T LSR L+A L+YGGVP E+F++LL+N +E +
Sbjct: 488 SKDRALSNFSTFNSLEVVTTSNPPKRTK-LSRNLVALLSYGGVPNEFFLDLLLNTMEETK 546
Query: 1399 SVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGLKVGKLP 1220
++ NK AL +L +G+MDD +MIL GIPL+EP+L+ R+S+L E+ LK G+LP
Sbjct: 547 TIFNNKRAALKAALNHGDMDDQNAAQMILVGIPLDEPHLKDRLSILSNIEKNDLKAGRLP 606
Query: 1219 VSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATYVKDLE 1040
V+E YYLMGT DPTG L D+VC+IL+SGQISG VLVY++PG+HFGDIHVL ATYVK LE
Sbjct: 607 VTESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGVHFGDIHVLKATYVKALE 666
Query: 1039 LIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW-KRPHSAK 863
VGN+KYA+FFP KGPRSL DE+A DFDGDMY++SRNP+LL+ F+PSEPW +K
Sbjct: 667 EYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPSEPWVSLSPPSK 726
Query: 862 FVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECAAEKC 683
+KP DFS +ELE LF FL ARF SN +GMAADSWL+ MDR LTLGDE A EK
Sbjct: 727 SNSTRKPIDFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKA 786
Query: 682 RVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSILGLIYDKV 503
+K KML L+DIYYDALDA+K G KV +P+ LK D FPH+M+R + S SILG+IYD V
Sbjct: 787 EMKRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDKKFKSTSILGIIYDFV 846
Query: 502 DSFQATE-LPSKEVWKLPCFSGEAPVSCL--KSWKDHYDHYRNEMTHALKLDSESRQVAA 332
S A E PS E+ KL CF E PVS + + YD+YR EM AL ++ A
Sbjct: 847 QSQTAEEHTPSSEISKLQCFEDE-PVSEFHKEKCRPWYDNYRAEMIQAL----SNKDDTA 901
Query: 331 DEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVAGR 152
E+I+KYKQ+ YGAA FE+S + EE++ +ALA+Y I YDYA ++ V KC FAW+VAG
Sbjct: 902 SEVIEKYKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKSVRKCGFAWKVAGP 961
Query: 151 ALCMLHASNQDKDTIVCVKSVLREV 77
LC + ++C S+L+E+
Sbjct: 962 VLCRFYLKKTGGKALLCSLSMLKEL 986
>ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
gi|462399806|gb|EMJ05474.1| hypothetical protein
PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 862 bits (2227), Expect = 0.0
Identities = 461/830 (55%), Positives = 576/830 (69%), Gaps = 9/830 (1%)
Frame = -3
Query: 2536 MTEFESQLWRLVGQKCIEETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKT 2357
M FE+ +W +G+ I R + DWDSG+TY+Y C V DGSY FKGP L+ K +T
Sbjct: 1 MQLFETTVWEALGRNYIGT--RHPTFDWDSGKTYVYHCEVSVDGSYKFKGPCLNNTK-RT 57
Query: 2356 HLQRVLGDDNVLDVRFAEEVVNR-----NDFNRSNAGYQNIANEGIYVGLRRYQFFVFKD 2192
LQ+VLGDDNVL V+F++ V R D N +N Y +A EGI VGLRRYQFFVFKD
Sbjct: 58 LLQKVLGDDNVLMVKFSDVVTERVPTAIKDNNYAN--YSKVAREGILVGLRRYQFFVFKD 115
Query: 2191 GGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKY 2012
GG +EKKK+ TSSPVKCYF+ + SNA+ID + Y FSN+ IHE R +FMH HTVSSV+ Y
Sbjct: 116 GGNKEKKKNPTSSPVKCYFICVGSNAAIDRSEDYKFSNRKIHETRCIFMHAHTVSSVSNY 175
Query: 2011 MARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDL 1832
MARFSLILSKT L+VD + V ++ I+D CLD G I + DG+ LIHTDGTGFISEDL
Sbjct: 176 MARFSLILSKTESLEVDWSLVKVEDIDDEYCLDESGNRI-DRDGKPLIHTDGTGFISEDL 234
Query: 1831 ALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAV 1652
AL CP+++ K Y S E PLL+QFRLF GRAV
Sbjct: 235 ALLCPKDLLKRDYISKEYIE-------------------------PLLLQFRLFYKGRAV 269
Query: 1651 KGTFLVNKKLPPKTIQIRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIA 1472
KGTFL+NK LPPKTIQIRPSM+KV+TDP D QT NSLEIV+ S R T + SR LIA
Sbjct: 270 KGTFLINKTLPPKTIQIRPSMVKVETDPMISDDQTVNSLEIVTVSKSHRNT-FFSRHLIA 328
Query: 1471 HLNYGGVPREYFMELLMNALEAAQSVHYNKSEALTVSLRYGEMDD-FLVPRMILCGIPLN 1295
L +GGVP+EYF ELLM LE + V ++ A V+ +GE+DD + +MIL GIPL
Sbjct: 329 LLCHGGVPKEYFRELLMKDLEDTRGVFCSRRAAFKVAYNHGEIDDDYNSVKMILSGIPLE 388
Query: 1294 EPYLQYRMSVLLKEERKGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKV 1115
E YLQYR+S+L KEE K L+ GK+ + Y LMGTADPTG+L D+VCIILDSGQ+SG+V
Sbjct: 389 ESYLQYRLSILKKEENKSLQKGKICSPQSYMLMGTADPTGILERDEVCIILDSGQMSGQV 448
Query: 1114 LVYKHPGLHFGDIHVLTATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYW 935
LVY+HPGLHFGDIH+L A YVK+LE +VGNAKYAIFF KGPRS+ADEM DFDGD+YW
Sbjct: 449 LVYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVADEMGGGDFDGDLYW 508
Query: 934 VSRNPQLLQYFQPSEPW-KRPHSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLG 758
VSRNPQLL+ F+PSEPW + S V +P++ + +E+ L + FL RF S +
Sbjct: 509 VSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNHIEDALIKLFLKTRFEPSFAMS 568
Query: 757 MAADSWLSFMDRVLTLGDECAAEKCRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKAD 578
A+DSWL+ MDR+L LGD +EK VK ML+LVD+YY+ALDA K G KV VP ELK++
Sbjct: 569 EASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPKKGGKVVVPGELKSN 628
Query: 577 KFPHFMKRANSYYSKSILGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHY 398
FPH+M+R NSY S SILGLIYD V+++QA + KEV KLP F E P CLK W++HY
Sbjct: 629 LFPHYMERVNSYKSTSILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVPEECLKKWREHY 688
Query: 397 DHYRNEMTHALKLDS-ESRQVAADEIIQKYKQKLYGAAE-FEESARKQEEIFNEALAIYE 224
HYR+EM+ A++ D +S+ AAD++++KYK+ LYG AE E S R EIF+EALAIY
Sbjct: 689 QHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLENSTRPLHEIFDEALAIYR 748
Query: 223 ISYDYAKKINDVGKCSFAWRVAGRALCMLHASNQDKDTIVCVKSVLREVL 74
++YD+A VGKC FAW+VAG ALC + + Q TI SVL++++
Sbjct: 749 VTYDHAISQGAVGKCCFAWKVAGSALCKYYMNKQGARTIEASFSVLKDLV 798
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 856 bits (2211), Expect = 0.0
Identities = 450/867 (51%), Positives = 596/867 (68%), Gaps = 6/867 (0%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKL-EESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEE 2480
LL+LGELEF+KAFL+LSY G + L EE IS D I+ K+LPM +E+ +W +GQ+
Sbjct: 140 LLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSP 199
Query: 2479 TDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFAEE 2300
+R + L+ DSG T+ Y+C+V DGSY FKG HL L+ THL +VLGDDNVL V+F +
Sbjct: 200 KERRRPLEGDSGMTHYYQCHVATDGSYKFKG-HL-LENTGTHLHKVLGDDNVLTVKFDKV 257
Query: 2299 VVNRNDFNRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMES 2120
+ N + Y+ IA GI VGLRRY+FFVFKDGGKEEKKK +++ VKCYF+R +S
Sbjct: 258 LGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDS 317
Query: 2119 NASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHID 1940
ASID + PYIF+ KS+HEAR FMHV+T+SS+ YM+RFSLILSKT L+VD + +
Sbjct: 318 TASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFE 377
Query: 1939 TIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLD 1760
I+DI C D D + + +++G+ IH+DGTG+ISEDLA CP N++KG +++
Sbjct: 378 QIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKG---------KSMR 428
Query: 1759 CIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRPSMIKV 1580
+ K+ +EPPLLIQFR+F NG AVKGTFL NKKLPP+T+Q+RPSMIKV
Sbjct: 429 SNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKV 488
Query: 1579 DTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNALEAAQ 1400
D + T NSLE+V+TSN PRK LSR L+A L+YGGVP ++F+ +L N LE ++
Sbjct: 489 YEDRTLSNLSTFNSLEVVTTSNPPRKAR-LSRNLVALLSYGGVPNDFFLNILRNTLEESK 547
Query: 1399 SVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVLLKEERKGLKVGKLP 1220
++ Y++ A ++ YG DD MIL GIPL+EPYL+ R+S LLK ER LK G+ P
Sbjct: 548 TIFYSERAAFKAAINYG--DDQYTADMILVGIPLDEPYLKDRLSYLLKTERNALKAGRFP 605
Query: 1219 VSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATYVKDLE 1040
+ E YY+MGT DPTG L +++C+IL SGQISG VLVY++PGLHFGDIHVL ATYVK LE
Sbjct: 606 IDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALE 665
Query: 1039 LIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPW-KRPHSAK 863
VGNAK+A+FFP KGPRSL DE+A DFDGDMY++SRNP+LL++F+PSEPW +K
Sbjct: 666 DYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSK 725
Query: 862 FVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECAAEKC 683
C +KP++ S +ELE LF+ FL ARF + +GMAAD WL MD LTLGDE A EK
Sbjct: 726 IYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKY 785
Query: 682 RVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKR--ANSYYSKSILGLIYD 509
K+ +L+L+DIYYDALDA K G KV++P +L+ FPH+M+R + S SILGLI+D
Sbjct: 786 ERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFD 845
Query: 508 KVDSFQATELPSKEVWKLPCFSGE-APVSCLKSWKDHYDHYRNEMTHA-LKLDSESRQVA 335
VDS A E P E+ KL F E P S + + Y++YR+EM+ A ++ D R
Sbjct: 846 TVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQL 905
Query: 334 ADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVAG 155
+E+IQ+YKQ YGAA FE+S + EE++ +ALA+Y + YDYA + V KC+FAW VAG
Sbjct: 906 TNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQ-EGVAKCTFAWNVAG 964
Query: 154 RALCMLHASNQDKDTIVCVKSVLREVL 74
LC + ++V SVL+++L
Sbjct: 965 PVLCKFYLKKTKDKSVVASTSVLKKLL 991
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 844 bits (2181), Expect = 0.0
Identities = 459/875 (52%), Positives = 589/875 (67%), Gaps = 13/875 (1%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKLEESI---SVDLIQSMKNLPMTEFESQLWRLVGQKCI 2486
LL+L +LEFRK FLIL+Y G++K+E+ I V I M PM+ FES +W G C
Sbjct: 244 LLALSKLEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYGHLC- 302
Query: 2485 EETDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGDDNVLDVRFA 2306
E R + LDWDSGRT++Y C+V DGSYTFKGP+L + ++THLQ+ LGD+NVL V+F
Sbjct: 303 EHNKRVQYLDWDSGRTHLYHCHVHSDGSYTFKGPYL--KAERTHLQQSLGDENVLIVKFE 360
Query: 2305 EEVVNRNDFNRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEE--KKKSLTSSPVKCYFV 2132
+ + I GI VGLRRY+FFV+KD GK+ K K VKCYFV
Sbjct: 361 QNTPGCPE---------EIVQNGILVGLRRYRFFVYKDDGKKRSSKDKEEKIDSVKCYFV 411
Query: 2131 RMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHAS 1952
RMES + E YI +K +HEAR FMHVH VSS+AKYMARFSL LS T+KL VD S
Sbjct: 412 RMESLNPYEKET-YILRDKMVHEARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNS 470
Query: 1951 VHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFE 1772
V+ID IEDI C D GRII +EDG+ LIHTDGTG+ISEDLA KCP++ + + E
Sbjct: 471 VNIDRIEDICCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHRC-ANLE 529
Query: 1771 RNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPPKTIQIRPS 1592
R + ++ + SSEL ++ EPPLL+Q RLF NG AVKGT LVN+KLP +TIQIRPS
Sbjct: 530 RYTNGVKLGENSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPS 589
Query: 1591 MIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPREYFMELLMNAL 1412
MIKV+ DP+ Q NSLEI + S +PR T YLSR LIA L YGGVP EYF ++L N L
Sbjct: 590 MIKVEADPRLSRAQMFNSLEINTPSLKPRNT-YLSRTLIALLTYGGVPVEYFYDILNNTL 648
Query: 1411 EAAQSVHYNKSEALTVSLRYGEMDDF-LVPRMILCGIPLNEPYLQYRMSVLLKEERKGLK 1235
E Q ++ ++ AL V++ + + DD MI+ G+PL EPYL +S L KEER GLK
Sbjct: 649 EETQRLYSDEVTALKVAVNHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLK 708
Query: 1234 VGKLPVSECYYLMGTADPTGMLNSDQVCIILDSGQISGKVLVYKHPGLHFGDIHVLTATY 1055
G+LP+++ +YLMGTADPT LN +VC+IL+ GQI G+VLVY++PGLHFGDIH L A
Sbjct: 709 GGRLPIADTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVP 768
Query: 1054 VKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQYFQPSEPWKRP 875
VK+L IVGNAKY IFF TKGPRS A E+AN DFDGD YWVS+NPQLL+YF S PW R
Sbjct: 769 VKNLGDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYFTASRPWSRI 828
Query: 874 HSAKFVCHQKPTDFSTDELENVLFQQFLTARFPLSNTLGMAADSWLSFMDRVLTLGDECA 695
HS H++P +FS +E E+ LFQ FL R P + ++ A+ +W + MDR+L LG
Sbjct: 829 HSTPKTLHREPNNFSAEEREHDLFQTFLETRMP-NYSMADASANWYALMDRLLILGKNNT 887
Query: 694 AEK---CRVKEKMLQLVDIYYDALDASKTGKKVEVPNELKADKFPHFMKRANSYYSKSIL 524
E VKEK+ +L+D+YYDA+DA K+G KV +P LK DKFPHF+++ SY+S S+L
Sbjct: 888 TENEEIKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKESYHSTSVL 947
Query: 523 GLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHYRNEMTHALKLDSESR 344
G IYD+V+ F+A E + E+ KL F P +CL+ W++ Y +YR EM AL SES+
Sbjct: 948 GEIYDRVEKFKAEEPAAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESK 1007
Query: 343 QVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDYAKKINDVGKCSFAWR 164
AD++I+KYKQ LY A + EES R +++N+ALAIY ++YDYAK I DV KC FAW+
Sbjct: 1008 NDLADQVIKKYKQLLYEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWK 1067
Query: 163 VAGRALCMLHASNQDKD----TIVCVKSVLREVLN 71
VAG ALC LHA K+ + S+L ++LN
Sbjct: 1068 VAGAALCKLHAELHAKEHNQKVMAMSPSILHKLLN 1102
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 842 bits (2175), Expect = 0.0
Identities = 470/1005 (46%), Positives = 642/1005 (63%), Gaps = 27/1005 (2%)
Frame = -3
Query: 3010 IRGICEEQSLLSPDIRARRELSLLGEEASLQLLQRT------RNLSDYIIYMAGV----- 2864
I I E+QS D RR L+ LGE+ +LQ+L R+L+ + +YM
Sbjct: 16 INQIREQQSQPPLDSSIRRNLAELGEQKALQILYYISTQPIKRSLNAFTVYMINQHRSPP 75
Query: 2863 --SDPVSSQEXXXXXXXXXXXXXXXXXXXXXDTKLPFSNLEEPKPKGQMNLNXXXXXXXX 2690
S P SSQ ++ P P +L
Sbjct: 76 SPSRPSSSQSQSQSQSQSRPYSLQSQLLSHLQSR------PSPLPLRSQSLPSSSTAPPP 129
Query: 2689 XXXXXXXXXPHLLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLW 2510
L +LGELEFRK+FL++SY G++ +E ++ + ++S+K L M FE ++W
Sbjct: 130 HSDV-------LTALGELEFRKSFLLMSYAGRENIENVVTAEYVRSLKELTMKNFEKEIW 182
Query: 2509 RLVGQKCIEE-TDRSKSLDWDSGRTYIYRCYVDPDGSYTFKGPHLHLQKQKTHLQRVLGD 2333
VGQK IE TDR LDWDSGRT+IY+C+V P+GS FKGP L Q +THLQ+ LGD
Sbjct: 183 ETVGQKYIERPTDRLVYLDWDSGRTHIYQCFVSPNGSLRFKGPIL--QHTRTHLQKSLGD 240
Query: 2332 DNVLDVRFAEEVVNRNDFNRSNAG---YQNIANEGIYVGLRRYQFFVFKDGGKEEKKKSL 2162
DNVL V+FAE+ R + Y+ EG+ VGLR Y+FFVFK GGKEEKKK
Sbjct: 241 DNVLLVKFAEDQYARKSETSAQKAAKHYEKFGKEGLRVGLRLYRFFVFKVGGKEEKKKDP 300
Query: 2161 TSSPVKCYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSK 1982
T+S VKCYFVR ES+ S D + YI SN+++ E+RS+FMH H + ++ KYMARFSLILSK
Sbjct: 301 TTSSVKCYFVRTESSCSTDERESYILSNRTMFESRSLFMHAHMLPNIDKYMARFSLILSK 360
Query: 1981 TLKLDVDHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYK 1802
T KL+VD +V + TI D+ C D G + + + ++ TDGTGFISEDLA+ CP NV K
Sbjct: 361 TYKLNVDWTTVSVKTIPDVCCQDEHGNTVYHNEKRCIL-TDGTGFISEDLAVLCPNNVLK 419
Query: 1801 GHYSSHGEFERNLDCIEFEDKSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKL 1622
G + + + ++ ED S + ++ +PPLLIQ RLF+ G A+KGT LVNKKL
Sbjct: 420 GSNLKNTHIKEISNLVKLEDMSKAMGEAALSKHQPPLLIQCRLFHMGCAMKGTLLVNKKL 479
Query: 1621 PPKTIQIRPSMIKVDTDPKHLDTQTANSLEIVSTSNRPRKTSYLSRFLIAHLNYGGVPRE 1442
P TIQ+RPSMIKV TDP + Q+ NS+E+V+TS++P + +YLS++LIA L+YG VP E
Sbjct: 480 SPSTIQVRPSMIKVMTDPSLSNIQSLNSMEVVNTSHKPNR-AYLSKYLIALLSYGRVPNE 538
Query: 1441 YFMELLMNALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRMILCGIPLNEPYLQYRMSVL 1262
+FM++L + LE A ++ NK AL SL Y EMDDF MILCGIPL+EP+LQ+ +S L
Sbjct: 539 FFMDVLKSNLEDAGHIYTNKRAALRASLNYAEMDDFNAAGMILCGIPLDEPFLQHYLSKL 598
Query: 1261 LKEERKGLKVGKLPVSECYYLMGTADPTG--MLNSDQVCIILDSGQISGKVLVYKHPGLH 1088
+K E+ L+ GKL V +C+YLMGT DPT L ++QVCII ++GQI+G VLVY++PGLH
Sbjct: 599 VKLEKNKLRTGKLYVEDCFYLMGTVDPTEGHCLEANQVCIIHENGQITGDVLVYRNPGLH 658
Query: 1087 FGDIHVLTATYVKDLELIVGNAKYAIFFPTKGPRSLADEMANSDFDGDMYWVSRNPQLLQ 908
FGDIH++ ATYV+ LE VG+ KYAIFFP GPRS+ADE+A DFDGDMYWVS+NPQLL+
Sbjct: 659 FGDIHIMQATYVEGLESYVGHGKYAIFFPCVGPRSVADEIAGGDFDGDMYWVSKNPQLLE 718
Query: 907 YFQPSEPWKRPHSAKFVCHQKPTDFSTDEL---ENVLFQQFLTARFPLSNTLGMAADSWL 737
F+ S+PW P S+ + E LF+ +L RF S+ +G+AADSW+
Sbjct: 719 CFRKSDPWMESPPC------NPVILSSSVIKPSEEELFKLYLQTRFQSSSAIGIAADSWM 772
Query: 736 SFMDRVLTLGDECAAEK--CRVKEKMLQLVDIYYDALDA-SKTGKKVEVPNELKADKFPH 566
+ MDR+LTL ++ EK +VKE +L+L+DIYY+ALDA K G K++VP +L + FPH
Sbjct: 773 ALMDRLLTLRNDITKEKEVLQVKENILKLIDIYYEALDAPKKGGGKIQVPEDLTVELFPH 832
Query: 565 FMKR-ANSYYSKSILGLIYDKVDSFQATELPSKEVWKLPCFSGEAPVSCLKSWKDHYDHY 389
+M+R S+ S SILGLIYD+V +Q +++ ++ KLPC E P+ C++ W+ Y Y
Sbjct: 833 YMERDGKSFTSTSILGLIYDEVCRWQTSDMSGTKIRKLPCLDVEIPMHCVEKWETLYKEY 892
Query: 388 RNEMTHALKLDSESRQVAADEIIQKYKQKLYGAAEFEESARKQEEIFNEALAIYEISYDY 209
R +M+ A + S S++ AA E+I+KYKQK AA E+ ++ +I++EALA+Y ++YDY
Sbjct: 893 RTDMSFACQ--SNSKEEAA-EVIKKYKQKFDVAANIEDCSKNVTDIYHEALAVYHVTYDY 949
Query: 208 AKKINDVGKCSFAWRVAGRALCMLHASNQD-KDTIVCVKSVLREV 77
A + NDV KC+FAW+VAG AL A NQ + C SVLRE+
Sbjct: 950 AIQWNDVAKCAFAWKVAGPALTNYCAENQSHSKCLPCSSSVLREI 994
>gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 827 bits (2137), Expect = 0.0
Identities = 443/903 (49%), Positives = 605/903 (66%), Gaps = 42/903 (4%)
Frame = -3
Query: 2656 LLSLGELEFRKAFLILSYCGKKKLEESISVDLIQSMKNLPMTEFESQLWRLVGQKCIEET 2477
+L+L EL FRK F++ +Y +K+E +SVD I+S+K L M +FESQ+WR G K I +
Sbjct: 346 MLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAAS 405
Query: 2476 DRSKSLDWDSGRTYIYRCYVDPDGSYT---FKGPHLHLQKQKTHLQRVLGDDNVLDVRFA 2306
DR+K+LD D G T +Y C V G FKGP++ + +THLQ+V+GDDNVL V+F
Sbjct: 406 DRAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYI--ENTRTHLQKVVGDDNVLVVKFM 463
Query: 2305 EEVVN-RNDFNRSNAGYQNIANEGIYVGLRRYQFFVFKDGGKEEK-------KKSLTSSP 2150
++ + + DF+ Y +A +GI +GLRRY+FFV+KDGGKEEK K+ +SP
Sbjct: 464 GKLSDTKTDFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSP 523
Query: 2149 VKCYFVRMESNASIDAEKPYIFSNKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKL 1970
V CYFVR ES ++D +PYI S +++ +AR +FMH+ + ++AKYMARF+LILSKT+
Sbjct: 524 VMCYFVRTESGWNMD--EPYILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITW 581
Query: 1969 DVDHASVHIDTIEDIDCLDGDGRIIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYS 1790
D D ++V++ I+D C+D G ++ ++D E LIHTDGTG +S DLAL CP +++KG +
Sbjct: 582 DADLSAVYVRRIKDEPCMDRHGNVV-HKDQEPLIHTDGTGLVSVDLALNCPTSIFKGKFL 640
Query: 1789 SHGEFERNLDCIEFED--KSSELTKSTSHIREPPLLIQFRLFNNGRAVKGTFLVNKKLPP 1616
+ C E E + + L + S E PLL+QFRLF NG AVKGT LV+++LPP
Sbjct: 641 KP---QGIATCDESETVMRPNSLKRHRSLTAEHPLLMQFRLFYNGSAVKGTVLVDRRLPP 697
Query: 1615 KTIQIRPSMIKVDTDP--------------------KHLD-TQTANSLEIVSTSNRPRKT 1499
TI IRPSM+K++T P K L Q+ NS EIVSTSNRPR+T
Sbjct: 698 ATILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRT 757
Query: 1498 SYLSRFLIAHLNYGGVPREYFMELLMNALEAAQSVHYNKSEALTVSLRYGEMDDFLVPRM 1319
SRFLI L YGGVP EYF+ELL +A+E A++ Y+ +AL ++ Y +M+D + RM
Sbjct: 758 -LTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSARM 816
Query: 1318 ILCGIPLNEPYLQYRMSVLLKEERKGLKVGKLPVSECYYLMGTADPTGMLNSDQVCIILD 1139
IL GIPL E YLQ+R+ + ++ERKG+K GK+P+ ECYYLM T DPTG L ++VC+IL+
Sbjct: 817 ILSGIPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILE 876
Query: 1138 SGQISGKVLVYKHPGLHFGDIHVLTATYVKDLEL-IVGNAKYAIFFPTKGPRSLADEMAN 962
+GQ SG VLVYKHPGLHFGDIHVL ATY++DLE VG AKYAI FP GPRSLADEMAN
Sbjct: 877 NGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMAN 936
Query: 961 SDFDGDMYWVSRNPQLLQYFQPSEPWKRPHSAKFVCHQKPTDFSTDELENVLFQQFLTAR 782
SDFDGD+YWVS+NP+LL++F+PSEPW + K +KP D + +LE +LF +FL R
Sbjct: 937 SDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTR 996
Query: 781 FPLSNTLGMAADSWLSFMDRVLTLG-DECAAEKCRVKEKMLQLVDIYYDALDASKTGKKV 605
F S LG AADSWL++MDR+LT DE EK ++EKML+LVD+YY ALDA KTG KV
Sbjct: 997 FTPSFALGTAADSWLAYMDRLLTDSLDE--IEKKLIEEKMLKLVDLYYLALDAPKTGNKV 1054
Query: 604 EVPNELKADKFPHFMKRANSYYSKSILGLIYDK---VDSFQATELPSKEVWKLPCF-SGE 437
+P++L ++PHFM R+ SY+S SILG IYDK V+S ++ + V LPCF E
Sbjct: 1055 NIPSDLMVKQYPHFMGRSFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPCFMERE 1114
Query: 436 APVSCLKSWKDHYDHYRNE--MTHALKLDSESRQVAADEIIQKYKQKLYGAAEFEESARK 263
AP + W+ Y+ Y + M + +D E R + E+ +KYK LY A+EFE++ R
Sbjct: 1115 APPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYEKYKHMLYDASEFEQTQRD 1174
Query: 262 QEEIFNEALAIYEISYDYAKKINDVGKCSFAWRVAGRALCMLHASNQDKDTIVCVKSVLR 83
+++F+EA IY+I Y+ A+ ND +C FAW+VAGRALC +A + DT +C +LR
Sbjct: 1175 PDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTALCSLPLLR 1234
Query: 82 EVL 74
+++
Sbjct: 1235 KII 1237