BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00008061
         (1122 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   535   e-149
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   513   e-143
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   511   e-142
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   510   e-142
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   506   e-141
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas...   504   e-140
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   503   e-140
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   502   e-139
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   497   e-138
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas...   495   e-137
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   494   e-137
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   493   e-137
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   493   e-137
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   493   e-137
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   491   e-136
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   485   e-134
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   483   e-134
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   483   e-134
gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   482   e-133
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   482   e-133

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  535 bits (1379), Expect = e-149
 Identities = 269/352 (76%), Positives = 303/352 (86%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI  +SRARVQSSIRSG VSVN R+++KVSHVI+ GDKVNCTISELQPLRAEPEDIPL
Sbjct: 84   SSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPL 143

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKPAHMVVHPAPGNA+GTLVN ILHHCSLPTVAL N +  SE +D SD
Sbjct: 144  DIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDISD 201

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E ++F+  Q+         C  +IRPGIVHRLDKGTSGLLV+AKDEHSHAHLSEQFK  
Sbjct: 202  DEFNSFAAGQNCGT------CETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 255

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            +IHRVYISLT+GVP+P++GR+E+P+GRD NNRIRM AVPGPSN  Q RHAASRYKVIE+L
Sbjct: 256  SIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEIL 315

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
              GGSALVEWRLETGRTHQIRAHAK+LGIPLLGDEVYGGTK+MALSLL+ R P+S  G L
Sbjct: 316  AAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQL 375

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
            +QLVS+LDRPCLHA+ALGF HP TG+N  FSC PP DFAEILS LR I+TEK
Sbjct: 376  AQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 427


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  513 bits (1322), Expect = e-143
 Identities = 261/356 (73%), Positives = 297/356 (83%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI  +SRARVQSSI+SG V+VNGRV++KVSH ++ GDKVNC ISELQPLRAEPEDIPL
Sbjct: 87   SSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPL 146

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKP HMVVHPAPGNA GTLVN ILHHCSLPTVALS  E+LS+ ED SD
Sbjct: 147  DIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVALSEKEVLSDTEDVSD 206

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +       D+    G S+     S+RPGIVHRLDKGTSGLLV+AKDEHSH+HLSEQFKQ 
Sbjct: 207  D-------DEGFCYGASAAA---SVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQH 256

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVYISLT GVPSP AGR+++ IGRD NNR+RM+AVPG ++  + RHAASRYKVIEVL
Sbjct: 257  TIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVL 316

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSAL++WRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMALSLL+ RTP +    L
Sbjct: 317  AGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQL 376

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSFK 1070
            S+LVS+L+RP LHAL LGF+HPH+ E   FSC PP DFAEILS LR I TEKP+FK
Sbjct: 377  SRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGTEKPTFK 432


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  511 bits (1317), Expect = e-142
 Identities = 265/354 (74%), Positives = 288/354 (81%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI  +SRARVQSSIRSG VS+NG+V++KVSH +K GD VNCTISELQPLRAE EDIPL
Sbjct: 78   SSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPL 137

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED +VLVVNKPAHMVVHPAPGNA GTLVN ILHHCSLPT+A SN E  S+ ED SD
Sbjct: 138  DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISD 197

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E              SS I G SIRPGIVHRLDKGTSGLLV+AKDEHSHAHLSEQFK  
Sbjct: 198  DE------------EFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 245

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVYISLT+GVPS  +GRIEVPI RD NNRIRM A+PG +   Q RHAASRYKVIE+L
Sbjct: 246  TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL 305

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTK+MA SLLQ RT     G +
Sbjct: 306  AGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKV 365

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPS 1064
             +LVS L RPCLHA+ALGF HPHT E  QFSCPPPADFAEILS LR I TEK S
Sbjct: 366  LKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGTEKLS 419


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  510 bits (1314), Expect = e-142
 Identities = 257/357 (71%), Positives = 297/357 (83%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI  VSRARVQSSIRSG VSVNGRV +KVSH++K GDKV+CTI++L+PLRAEPEDIPL
Sbjct: 78   SSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPL 137

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKPAHMVVHPAPGNA GTLV+ ILHHCSLPTV+    E+LS+ ED SD
Sbjct: 138  DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDGEDASD 197

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E++ FS ++S     SS +C  S+RPGIVHRLDKGTSGLLV+AK+EHS A L+EQFK+ 
Sbjct: 198  DELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAEQFKKH 257

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVY+S+T GVP+ +AGR+++PIGRD NNRIRM A+PG     + RHA SRYKVIE L
Sbjct: 258  TIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKL 317

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRLETGRTHQIRAHAKHLGIPL+GDEVYGGTK+MALSLLQ +TP    G L
Sbjct: 318  AGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGEL 377

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSFKN 1073
            SQLVS++DRPCLHAL LGF+HP TGEN  F+  PP DFAEILS LR I TEK +  N
Sbjct: 378  SQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKVTHPN 434


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  506 bits (1302), Expect = e-141
 Identities = 263/356 (73%), Positives = 293/356 (82%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRIS +SRARVQSSI+SG VSVNG+VI+KVSH +K GDKVNC ISELQPLRAEPE+IPL
Sbjct: 101  SSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPL 160

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED +VLVVNKPAHMVVHPAPGNA GTLVN ILHHCSLPTV  S+ E+LS  ED SD
Sbjct: 161  DIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV--SSQEVLSGAEDVSD 218

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            ++           EGL S     S+RPGIVHRLDKGTSGLLV+AKDEHSHAHLSEQFK  
Sbjct: 219  DD----------DEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 268

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVY+SLT GVP+PMAGRI+VPIGRD++NRIRM A+  P N  Q RHAASRYKVIE+L
Sbjct: 269  TIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEP-NRGQARHAASRYKVIEIL 327

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGT++MALSLL+ RT  SC   L
Sbjct: 328  AGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQL 387

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSFK 1070
            S  +S L+RPCLHALALGF HP TG+   FSCPPP DF EILS LR + TEK SFK
Sbjct: 388  SLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEKLSFK 443


>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009207|gb|ESW08114.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  504 bits (1297), Expect = e-140
 Identities = 251/360 (69%), Positives = 292/360 (81%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ +SRARVQSSI+SG V VNGRV++K S  +K GD++ CTI+ELQ LRA PE+IPL
Sbjct: 88   SSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPL 147

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLV+NKPAHMVVHPAPGN +GTLVN ILHHC+LP V  S  E LS+ ED  D
Sbjct: 148  DIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTED-CD 206

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E++++    SS EG  SR    SIRPGIVHRLDKGTSGLLV+AKDEHSH  LSEQFKQR
Sbjct: 207  DEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQR 266

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVY+SLTAGVP P++GR++VP+GRDLNNR+RM AV GP N R+ RHAASRYKVIE+L
Sbjct: 267  TIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEIL 326

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GG  +LVEW+LETGRTHQIRAHAK+LG+PLLGDEVYGGTKSM LSLL+ R+P S  G +
Sbjct: 327  AGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKI 386

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSFKN*SD 1082
             Q+VS LDRPCLHAL LGF+HPHTGE   FSC PP DF EILS LR I +E  SF   S+
Sbjct: 387  VQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSKPSN 446


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  503 bits (1294), Expect = e-140
 Identities = 252/352 (71%), Positives = 295/352 (83%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI  VSRARVQSSIRSG VSVNGRV +KVSH++K GDKV+CTI++L+PLRAEPEDIPL
Sbjct: 78   SSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPL 137

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IV+ED HVLVVNKPAHMVVHPAPGNA GTLV+ ILHHCSLPT++    E+LS+ ED SD
Sbjct: 138  DIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASD 197

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E++ FS ++S     SS +C  S+RPGIVHRLDKGTSGLLV+AK+E+S A L+EQFK+ 
Sbjct: 198  DELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSLASLAEQFKKH 257

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVY+S+T GVP+ +AGR+++PIGRD NNRIRM A+PG     + RHA SRYKVIE L
Sbjct: 258  TIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKL 317

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
              GGSALVEWRLETGRTHQIRAHAK+LGIPL+GDEVYGGTK+MALSLLQ +TP    G L
Sbjct: 318  ARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGKL 377

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
            SQLVS++DRPCLHAL LGF+HP TGEN  F+  PP DFAEILS LR INTEK
Sbjct: 378  SQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAINTEK 429


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  502 bits (1293), Expect = e-139
 Identities = 250/357 (70%), Positives = 296/357 (82%), Gaps = 2/357 (0%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ +SRARVQSSI+SG V VNGRV++KVS  +K GD++ CTI+ELQ LRA P++IPL
Sbjct: 89   SSRINGISRARVQSSIKSGLVHVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPL 148

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLV+NKPAHMVVHPAPGN +GTLVN ILHHC+LP V  S  E LS+ ED SD
Sbjct: 149  DIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTED-SD 207

Query: 363  NEISNFSLDQSSREGLSSR--ICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFK 536
            +E +++    SS EGL+SR  +  +SIRPGIVHRLDKGTSGLLV+AKDEHSH  LSEQFK
Sbjct: 208  DEFNSYISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFK 267

Query: 537  QRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIE 716
            QRTI R+Y+SLTAGVP+P+AGR+EVP+GRD NNRIRM AV GP N ++ R+AASRYKVIE
Sbjct: 268  QRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIE 327

Query: 717  VLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRG 896
            +L GG  +LVEW+LETGRTHQIRAHAK+LG+PLLGDE+YGGTKSM LSLL+ RTP S   
Sbjct: 328  ILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHS 387

Query: 897  NLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSF 1067
             + ++VS+LDRPCLHA  LGF+HPHTGE   FSC PPADFAEILS LR I +E  SF
Sbjct: 388  KIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVSF 444


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  497 bits (1279), Expect = e-138
 Identities = 252/352 (71%), Positives = 288/352 (81%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            S RI+ +SRARVQSSIR+G VSVNGRVI+KVSH +K GD +NCTISELQPLRAEPEDI L
Sbjct: 84   SCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDL 143

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HCSLP VA S GE      ++SD
Sbjct: 144  DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGE------NESD 197

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +++S+   D+ S  G+ SR+    IRPGIVHRLDKGTSGLLV+AKDEHSHAHLS QFKQ 
Sbjct: 198  SDVSD---DEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQH 254

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            +I RVYISLT GVP   AGRIE+PI RD NNRIRM A+ G  N    ++AASRY V+E+L
Sbjct: 255  SIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEIL 314

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
              GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMA+SLL+ R  ++C G L
Sbjct: 315  AQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQL 374

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
             QLVS L+RPCLHAL LGF HPHTG+N +FSCPPP DF EILS LR I T+K
Sbjct: 375  MQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGTQK 426


>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009206|gb|ESW08113.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  495 bits (1275), Expect = e-137
 Identities = 251/371 (67%), Positives = 292/371 (78%), Gaps = 11/371 (2%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINK-----------VSHVIKVGDKVNCTISELQ 149
            SSRI+ +SRARVQSSI+SG V VNGRV++K            S  +K GD++ CTI+ELQ
Sbjct: 88   SSRINGISRARVQSSIKSGLVHVNGRVVDKKSKHQPEQYALASFNVKAGDQIKCTIAELQ 147

Query: 150  PLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNG 329
             LRA PE+IPL+IVYED HVLV+NKPAHMVVHPAPGN +GTLVN ILHHC+LP V  S  
Sbjct: 148  KLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKE 207

Query: 330  EILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHS 509
            E LS+ ED  D+E++++    SS EG  SR    SIRPGIVHRLDKGTSGLLV+AKDEHS
Sbjct: 208  EGLSDTED-CDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHS 266

Query: 510  HAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRH 689
            H  LSEQFKQRTI RVY+SLTAGVP P++GR++VP+GRDLNNR+RM AV GP N R+ RH
Sbjct: 267  HMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARH 326

Query: 690  AASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQ 869
            AASRYKVIE+L GG  +LVEW+LETGRTHQIRAHAK+LG+PLLGDEVYGGTKSM LSLL+
Sbjct: 327  AASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLR 386

Query: 870  CRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNIN 1049
             R+P S  G + Q+VS LDRPCLHAL LGF+HPHTGE   FSC PP DF EILS LR I 
Sbjct: 387  PRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIG 446

Query: 1050 TEKPSFKN*SD 1082
            +E  SF   S+
Sbjct: 447  SESVSFSKPSN 457


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  494 bits (1271), Expect = e-137
 Identities = 252/352 (71%), Positives = 289/352 (82%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            S RI+ +SRARVQSSIR+G VSVNGRVI+KVSH +K GD +NCTISELQPLRAEPEDI L
Sbjct: 84   SCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDL 143

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HCSLP VA S GE      ++SD
Sbjct: 144  DIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGE------NESD 197

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +++S+   D+ S  G+ SR+    IRPGIVHRLDKGTSGLLV+AKDEHSHAHLS QFKQ 
Sbjct: 198  SDVSD---DEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQH 254

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            +I RVYISLT GVP   AGRIE+PI RD NNRIRM A+ G +N    ++AASRY V+E+L
Sbjct: 255  SIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTNN-PHAKYAASRYNVMEIL 313

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
              GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMA+SLL+ R  ++C G L
Sbjct: 314  AQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQL 373

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
             QLVS L+RPCLHAL LGF HPHTG+N +FSCPPP DF EILS LR I T+K
Sbjct: 374  MQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGTQK 425


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  493 bits (1269), Expect = e-137
 Identities = 244/350 (69%), Positives = 282/350 (80%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            S+RI  VSRAR+QSSIR G V VNG  I KVSH++KVGD V+CT+S LQPL+AEPED+PL
Sbjct: 90   SARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVDCTVSHLQPLKAEPEDMPL 149

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +I+YED HVLVVNKPAHMVVHPAPGNANGTLVN ILHHC+LP   L +GE+ SE +D+ D
Sbjct: 150  DIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLPAFGLPDGELTSESDDECD 209

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            N ++ F+ D  S +      C  SIRPGIVHRLDKGTSGLLV+AK+EHSHAHLSEQFK  
Sbjct: 210  NGLTMFNPDPISTQ------CRSSIRPGIVHRLDKGTSGLLVVAKNEHSHAHLSEQFKLH 263

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TIHR YISLT GVPSP  G IE+PI RD+NNRIRM AV G +N R+ R A SRY V+EVL
Sbjct: 264  TIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKARLATSRYHVMEVL 323

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRL+TGRTHQIR HAK++G PLLGDEVYGGTKSMALS L+ RTP+   G L
Sbjct: 324  AGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRLRPRTPSHYHGPL 383

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINT 1052
            SQLVS L RPCLHA +LGFKHPH+ EN  F+CPPP DFAE+L  L++I +
Sbjct: 384  SQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQSIRS 433


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  493 bits (1268), Expect = e-137
 Identities = 249/352 (70%), Positives = 286/352 (81%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSR+  VSRARVQSSIR G VSVNGRV++KVSH +K GD+VNCTISELQPL+AEPEDIPL
Sbjct: 90   SSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSHNVKAGDEVNCTISELQPLKAEPEDIPL 149

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED H+LVVNKPAHMVVHPAPGN  GTLVN ILHHCSLP VA SN E      DDSD
Sbjct: 150  DIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVAYSNPE------DDSD 203

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
             E  +   + +S   L++     S+RPGIVHRLDKGTSGLLV+AKDEHSHAHL+EQFK  
Sbjct: 204  EETLSDDEEMTSSSSLAA-----SVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLH 258

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVYISLT+GVPSP  GR+++PIGRD NNRIRM A+PG  +  + RHAASRYKVIE L
Sbjct: 259  TIERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLSRGKARHAASRYKVIETL 318

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRLETGRTHQIRAHAK++G+PLLGDEVYGGTKS+ALSLLQ R   S +  +
Sbjct: 319  AGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSVALSLLQRRVSRSDQEQI 378

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
             +LVS++DRPCLHA+ LGF+HP TGE  +FSCPPP+D AEI+ LLR    EK
Sbjct: 379  LELVSRMDRPCLHAIVLGFEHPCTGEVVKFSCPPPSDLAEIVGLLRRSGREK 430


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  493 bits (1268), Expect = e-137
 Identities = 242/351 (68%), Positives = 288/351 (82%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ +SRARVQSSI++G V VNGR+++KVS  ++ GD++ CTI+ELQ LRA PE+IPL
Sbjct: 89   SSRINGISRARVQSSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPENIPL 148

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED H+LV+NKPAHMVVHPAPGN +GTLVN ILHHC+LP V  S  E LS+ ED SD
Sbjct: 149  DIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTED-SD 207

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E++ F+    S EGL SR+   SIRPGIVHRLDKGTSGLLV+AKDEHSH  LSEQFK R
Sbjct: 208  DELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLR 267

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVYISLTAGVP+P+AGR+EVP+GRD NNR+RM AV GP    + RHAASRYKVIE+L
Sbjct: 268  TIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARHAASRYKVIEIL 327

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GG  ALVEW+LETGRTHQIRAHA++LG+PLLGDEVYGGTK+M LSLL+ RT  S  G +
Sbjct: 328  AGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLRPRTTPSLHGEM 387

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTE 1055
            +++VS+LDRPCLHA+ LGF+HPHTGE   FSC PP DF EILS LR I  +
Sbjct: 388  TKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRRIGRQ 438


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  491 bits (1263), Expect = e-136
 Identities = 258/379 (68%), Positives = 292/379 (77%), Gaps = 27/379 (7%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINK---------------------------VSH 101
            SSRI  +SRARVQSSIRSG VSVN R+++K                           VSH
Sbjct: 213  SSRIIGISRARVQSSIRSGLVSVNDRIVDKAMLVSRKFEVGEGKKIEEKDPITYSEQVSH 272

Query: 102  VIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVN 281
            VI+ GDKVNCTISELQPLRAEPEDIPL+IVYED HV          VHPAPGNA+GTLVN
Sbjct: 273  VIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV----------VHPAPGNASGTLVN 322

Query: 282  AILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRL 461
             ILHHCSLPTVAL N +  SE +D  D+E ++F+  Q+         C  +IRPGIVHRL
Sbjct: 323  GILHHCSLPTVALPNRD--SEEDDILDDEFNSFAAGQNCGT------CETNIRPGIVHRL 374

Query: 462  DKGTSGLLVIAKDEHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRI 641
            DKGTSGLLV+AKDEHSHAHLSEQFK  +IHRVYISLT+GVP+P++GR+E+P+GRD NNRI
Sbjct: 375  DKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRI 434

Query: 642  RMVAVPGPSNCRQVRHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLG 821
            RM AVPGPSN  Q RHAASRYKVIE+L  GGSALVEWRLETGRTHQIRAHAK+LGIPLLG
Sbjct: 435  RMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 494

Query: 822  DEVYGGTKSMALSLLQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCP 1001
            DEVYGGTK+MALSLL+ R P+S  G L+QLVS+LDRPCLHA+ALGF HP TG+N  FSC 
Sbjct: 495  DEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQ 554

Query: 1002 PPADFAEILSLLRNINTEK 1058
            PP DFAEILS LR I+TEK
Sbjct: 555  PPEDFAEILSWLRKISTEK 573


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
            gi|482570987|gb|EOA35175.1| hypothetical protein
            CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  485 bits (1248), Expect = e-134
 Identities = 249/351 (70%), Positives = 284/351 (80%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ VSRARVQSSIR G V+VNGRV++KVSH +K GD+VNCTISELQPL+AE EDIPL
Sbjct: 89   SSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKAGDEVNCTISELQPLKAEAEDIPL 148

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKPAHMVVHPAPGN  GTLVN ILHHCSLP+VA S+ E     +DDSD
Sbjct: 149  DIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPSVAYSSPE-----DDDSD 203

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +E  +FS      E  SS     S+RPGIVHRLDKGT+GLLV+AKDEHSHAHL+EQFK  
Sbjct: 204  DE--SFS---DGEEMTSSSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLH 258

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVY+SLT GVPSP  GRIE+PIGRD +NRIRM A+PG  +  + RHAASRYKVIE L
Sbjct: 259  TIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGLSSGRARHAASRYKVIETL 318

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRLETGRTHQIRAHAK++G+PLLGDEVYGGTKSMALSLLQ R   S +  +
Sbjct: 319  AGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVCRSDQDEI 378

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTE 1055
             +L+S+LDRPCLHA+ LGF HP TG+  +FSCPPP D AEI+ LLR    E
Sbjct: 379  IELISRLDRPCLHAIVLGFTHPCTGKIVKFSCPPPPDLAEIVGLLRRSGRE 429


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
            gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
            [Arabidopsis thaliana]
          Length = 430

 Score =  483 bits (1243), Expect = e-134
 Identities = 248/346 (71%), Positives = 280/346 (80%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ VSRARVQSSIR G V+VNGRV++KVSH +K GD+VNCTISELQPL+AE EDIPL
Sbjct: 89   SSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPL 148

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKPAHMVVHPAPGN  GTLVN ILHHCSLP V  SN    SE +DDSD
Sbjct: 149  DIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSN----SEEDDDSD 204

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
             E   FS D+      SS     S+RPGIVHRLDKGT+GLLV+AKDEHSHAHL+EQFK  
Sbjct: 205  EE--TFSDDEEMTTSPSSYAA--SVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLH 260

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVY+SLT GVPSP  GRIE+PIGRD +NRIRM A+PG     + RHAASRYKVIE  
Sbjct: 261  TIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETF 320

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSALVEWRLETGRTHQIRAHAK++G+PLLGDEVYGGTKSMALSLLQ R   S +  +
Sbjct: 321  AGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEI 380

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLR 1040
             +L+S++DRPCLHA+ LGF HP TGE  +FSCPPP+D AEI+ LLR
Sbjct: 381  IELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLR 426


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508723229|gb|EOY15126.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 409

 Score =  483 bits (1242), Expect = e-134
 Identities = 251/356 (70%), Positives = 286/356 (80%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI  +SRARVQSSI+SG V+VNGRV++KVSH ++ GDKVNC ISELQPLRAEPEDIPL
Sbjct: 74   SSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPL 133

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED HVLVVNKP HMVVHPAPGNA GTLVN ILHHCSLPTVALS  E+LS+ ED SD
Sbjct: 134  DIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVALSEKEVLSDTEDVSD 193

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
            +       D+    G S+     S+RPGIVHRLDKGTSGLLV+AK           FKQ 
Sbjct: 194  D-------DEGFCYGASAAA---SVRPGIVHRLDKGTSGLLVVAK-----------FKQH 232

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            TI RVYISLT GVPSP AGR+++ IGRD NNR+RM+AVPG ++  + RHAASRYKVIEVL
Sbjct: 233  TIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVL 292

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGGSAL++WRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMALSLL+ RTP +    L
Sbjct: 293  AGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQL 352

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSFK 1070
            S+LVS+L+RP LHAL LGF+HPH+ E   FSC PP DFAEILS LR I TEKP+FK
Sbjct: 353  SRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGTEKPTFK 408


>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 422

 Score =  482 bits (1241), Expect = e-133
 Identities = 245/352 (69%), Positives = 288/352 (81%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ +SRARVQSSIRSG VSVNG VI+KVSHV++ GD VNCTI+ELQPLRAEPE+IPL
Sbjct: 82   SSRINGISRARVQSSIRSGLVSVNGHVISKVSHVVRDGDSVNCTIAELQPLRAEPENIPL 141

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED H+LVVNKPAHMVVHPAPGNANGTLVN ILHHC L TV   N E L +  DD D
Sbjct: 142  DIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNGILHHCRLSTVCF-NPESLPDNIDDDD 200

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
                  S+D+++     S     S+RPGIVHRLDKGTSGLLV+AKDEHSH+HL+EQFK+ 
Sbjct: 201  ------SIDEATVFPSES-----SVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKH 249

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            T+ RVY+SLT GVPSP++GR+++PIGRD NNRIRMVA+PG +   + RHA SRYKV+E+L
Sbjct: 250  TVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKARHAVSRYKVVEIL 309

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGG ALVEWRLETGRTHQIRAHAK+LGIPLLGD+VYGGTK MALS LQ +  +S  G +
Sbjct: 310  AGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQLQSKNSSSYYGQI 369

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
             QLV+KL+RP LHAL+LGF+HPH GE+  FS  PP DFAEIL  LRNI++EK
Sbjct: 370  HQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRNISSEK 421


>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 432

 Score =  482 bits (1241), Expect = e-133
 Identities = 245/352 (69%), Positives = 288/352 (81%)
 Frame = +3

Query: 3    SSRISCVSRARVQSSIRSGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPL 182
            SSRI+ +SRARVQSSIRSG VSVNG VI+KVSHV++ GD VNCTI+ELQPLRAEPE+IPL
Sbjct: 82   SSRINGISRARVQSSIRSGLVSVNGHVISKVSHVVRDGDSVNCTIAELQPLRAEPENIPL 141

Query: 183  NIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSD 362
            +IVYED H+LVVNKPAHMVVHPAPGNANGTLVN ILHHC L TV   N E L +  DD D
Sbjct: 142  DIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNGILHHCRLSTVCF-NPESLPDNIDDDD 200

Query: 363  NEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDEHSHAHLSEQFKQR 542
                  S+D+++     S     S+RPGIVHRLDKGTSGLLV+AKDEHSH+HL+EQFK+ 
Sbjct: 201  ------SIDEATVFPSES-----SVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKH 249

Query: 543  TIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYKVIEVL 722
            T+ RVY+SLT GVPSP++GR+++PIGRD NNRIRMVA+PG +   + RHA SRYKV+E+L
Sbjct: 250  TVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKARHAVSRYKVVEIL 309

Query: 723  VGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCRGNL 902
             GGG ALVEWRLETGRTHQIRAHAK+LGIPLLGD+VYGGTK MALS LQ +  +S  G +
Sbjct: 310  AGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQLQSKNSSSYYGQI 369

Query: 903  SQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 1058
             QLV+KL+RP LHAL+LGF+HPH GE+  FS  PP DFAEIL  LRNI++EK
Sbjct: 370  HQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRNISSEK 421