BLASTX nr result
ID: Akebia25_contig00007702
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00007702
(3655 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1488 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1476 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1474 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1473 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1466 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1448 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1442 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1429 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 1420 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1419 0.0
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 1406 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1395 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 1375 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1373 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1373 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 1362 0.0
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 1357 0.0
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 1353 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 1352 0.0
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 1350 0.0
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1488 bits (3851), Expect = 0.0
Identities = 757/1135 (66%), Positives = 888/1135 (78%), Gaps = 16/1135 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
M +TIQ+ GFPS VSA+ +K+FLE Y G GT+ AL+I+ ++ + A VQFT+ +
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I TL +++ Y + LK +MD DI+PKPRA + + + I LHFGCQ+SD++F LWK
Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
++V V FG GLRK F L+H + EYKLELSYE IWQIQL++ + + KFLLIQ+L AP+
Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 3018 IYEKPSLFPSGHSYDNPTLNY-FRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLP 2845
IYEK D P L+Y F+++ DD WVR DFT SC IGQS A+CLELPY +LP
Sbjct: 179 IYEK----------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP 228
Query: 2844 GICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLA 2665
ENF YYKE + +F LESGS++S +L LVPI+GPPQG LP+ ILFKIN+LVQNGCL+
Sbjct: 229 NFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLS 288
Query: 2664 GPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPP 2485
GPTLD SFFRLV P+ PI++IE ALEKLYHLKECCYEPV WL+EQY Y K V P
Sbjct: 289 GPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVK-KPVAGSP 347
Query: 2484 AISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRS 2305
AISL+ GLVYVRRVQITP KVYFCGPEV VSNRVLRNY E IDNF+RVSF+DE EK+ S
Sbjct: 348 AISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHS 407
Query: 2304 TDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGF 2125
T +SPR E ++ T +YRRILS L+NGIVIGDKKFDFLAFSSSQLRDNSAWMFAS G
Sbjct: 408 TVISPRMSKEGRR-TGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGL 466
Query: 2124 TAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVF 1945
TAA+IR WMGDF +IRNVAKY+ARLGQSFSSS ETL V++ + YVF
Sbjct: 467 TAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVF 526
Query: 1944 SDGIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1768
SDGIGKIS + A +VA CG KSS PSAFQIRYGGYKGVVAVDP S KLSLR+SMFKY
Sbjct: 527 SDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 586
Query: 1767 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1588
S N LDVLAWSK+Q FLNRQLITLLSTLGV+D +FEKKQ+ VDQL++IL DP A E
Sbjct: 587 SDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQE 646
Query: 1587 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1408
AL++MSPGEN NVL+EML+CGYKPD EPFLSMMLQTF+A+KLLEL+ KTRIF+PNGR+MM
Sbjct: 647 ALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 706
Query: 1407 GCLDETSTLEYGQVFVQVTSLGHD---------RYNESYQRTSIKEGVVIVAKNPCLHPG 1255
GCLDET TLEYG+VFVQ++ G R + S+ I EG ++VAKNPCLHPG
Sbjct: 707 GCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPG 766
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVL AVNVP LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WDRDLIPP+QI P
Sbjct: 767 DVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINP 826
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
MDYTPAP +LDHDV IEEV+EYFTNY+VNDSLGIIANAHT FADKE KA C +LA
Sbjct: 827 MDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELA 886
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
+LFSIAVDFPKTG+PAEIP +L VKEYPDFMEK DKPTYES VIGKLFRE+KDIAP
Sbjct: 887 KLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNC 946
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
+I+SFT DVA++ YD DMEV GFEDY+ +A+YYK YD+KLGNLMDYY IKTE+EIL S
Sbjct: 947 NIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGS 1006
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHP 358
IM +SKSFDR+KD EAIGLAV+SLRKEARTWF + G+++ S +D+YAKASAWYHVTYHP
Sbjct: 1007 IMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHP 1066
Query: 357 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTT---ESFEHQLIRGLRLG 202
Y+G YNEGM RDH+LSFPWCVYDKL+ K+ + + S E +L +GLRLG
Sbjct: 1067 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRLG 1121
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 1476 bits (3822), Expect = 0.0
Identities = 752/1136 (66%), Positives = 884/1136 (77%), Gaps = 17/1136 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+SGFPS VSAE VK+FLEG+ G GTVYA+KIRP+K G +S+AIVQF T ++
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGS--RSYAIVQFMTVET 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I L N RL Y S L M+ DIVPKPRAT+ + + + LHFGCQ+S +KF LW+
Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
+V V+FG GLR+L F LT+ VEY+L+L YE +WQI+L + + K+LLIQ+L APR
Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
+YEK S +NP NYF+D+ DD WVRATDFT SCCIG SSA+ LELPY LP
Sbjct: 179 VYEKEVRI-SFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPD 237
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
+ ENF YYKE E RF LESGS+FS++LDLVPIVGPP G+ LP+ +FKIN L+QNGCL+G
Sbjct: 238 LRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSG 297
Query: 2661 PTLDASFFRLVHPQ-FMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPP 2485
PTLD F+RLV PQ + I ALEKL++LKEC YEP WLNEQY KY + PKPP
Sbjct: 298 PTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPP 357
Query: 2484 AISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRS 2305
AI+L+ GLVYVRRVQ+TPSKVYFCGPE+ VSNRVLR Y + ID F+RVSFVDE EK+ S
Sbjct: 358 AIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFS 417
Query: 2304 TDLSPRTKNEDK-KHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDG 2128
TDLSPRT N ++ + T IYRRILS LRNGI IGD+KF+FLAFSSSQLRDNS WMFA+ DG
Sbjct: 418 TDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDG 477
Query: 2127 FTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYV 1948
+A IR+W+GDFR IRNVAKY+ARLGQSF SSTETLTV ER +KYV
Sbjct: 478 HSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYV 537
Query: 1947 FSDGIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKY 1771
FSDGIGKIS FA++VAK CG+K PSAFQIRY GYKGVVAVDP S KLSLR+SM+KY
Sbjct: 538 FSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKY 597
Query: 1770 TSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKAL 1591
S+ KLDVLA+SK Q C+LNRQLITLLSTLGV DR+FEKKQ+E V QLN+IL DP +A
Sbjct: 598 ESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAR 657
Query: 1590 EALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAM 1411
EAL +MS GE N+L+E+L CGY+P+ EPFLSMMLQ F+ASKL EL+ KTRI IP+GRAM
Sbjct: 658 EALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAM 717
Query: 1410 MGCLDETSTLEYGQVFVQVTSLGHDRYNESY--------QRTSIKEGVVIVAKNPCLHPG 1255
MGCLDE TLEYG+VFVQ + + H + E + I G V+VAKNPCLHPG
Sbjct: 718 MGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPG 777
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVLRAVNVPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD +LIP +Q EP
Sbjct: 778 DVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEP 837
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
MDY+PAP LDHDV+IEEVQEYFTNY+VNDSLGIIANAHTAFADKEP KA S +CI+LA
Sbjct: 838 MDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELA 897
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
RLFSIAVDFPKTG+PA IP L+VKEYPDFMEKL+KPTYES VIGKLFRE+KDIAP
Sbjct: 898 RLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVG 957
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
S+ FT +VA + YD DME DGFEDYID+A+YYK YD+KLGNL+DYY IK+EAEI+G S
Sbjct: 958 SLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGS 1017
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHP 358
IM +SKSF +++D E+I +AVR+LRKEARTWF EKG+ S +D+YAKASAWY+VTYH
Sbjct: 1018 IMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHH 1077
Query: 357 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS----TRTTESFEHQLIRGLRLG 202
SY+G YNEGM RDHYLSFPWCVYDKLV IK++ + + S E R L LG
Sbjct: 1078 SYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHLG 1133
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 1474 bits (3815), Expect = 0.0
Identities = 751/1124 (66%), Positives = 886/1124 (78%), Gaps = 6/1124 (0%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+S FPS V AE VK FLE Y G TVYALKIR K GR ++AIVQFT +
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGR---AYAIVQFTKSTD 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I L NQRL Y S LK +M++DIVPKPR + E + LHFGCQVS++KF LW+
Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
VDV VNFG G+RKL+FLL+H VEY+L+L YE IWQI+L +N+ K+LLIQ+ APR
Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IYEK + SG ++NP LNYF D DD WVR TDFT S CIGQSS +CLELPY +LP
Sbjct: 178 IYEK-DVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPN 236
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
ENF YYKE E +F LESGS++S++L+LVPIVGP G++LPY ILFKIN LVQNGC+ G
Sbjct: 237 FRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPG 296
Query: 2661 PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 2482
P LDA+F+RLV+P + YI+ ALEKLY+LKECC+EP WL EQY Y + K P P
Sbjct: 297 PALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPV 356
Query: 2481 ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 2302
ISL++GLV VRRVQITPS+VYFCGPE+ VSNRVLR++ + IDNF+R++FVDE EK+ ST
Sbjct: 357 ISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHST 416
Query: 2301 DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 2122
DL R + TEIY RILSTL+NGIVIGDK+F+FLAFSSSQLR+NSAWMFAS +G T
Sbjct: 417 DLLTRNRI-----TEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLT 471
Query: 2121 AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVFS 1942
AA IR WMG+F +IRNVAKY+ARLGQSFSSSTETL+V++ +R+GI YVFS
Sbjct: 472 AADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFS 531
Query: 1941 DGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTS 1765
DGIGKIS KFA+KVA C + +PSAFQIR GG+KGVVAVDP S KLSLR SM KY S
Sbjct: 532 DGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYES 591
Query: 1764 QNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEA 1585
+N KLDVLAWSK+Q CFLNRQLITLLSTLGV D FE+KQ+EVVDQLN+ILTDP KA EA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEA 651
Query: 1584 LQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMG 1405
L++MSPGEN N+L+EMLLCGY+PD EPFLSMMLQTF+ASKLLEL+ K+RIF+ NGR+MMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMG 711
Query: 1404 CLDETSTLEYGQVFVQVTSLGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNV 1225
CLDET TL+YGQVFVQV+ + S QR I +G V+VAKNPCLHPGD+RVL AVNV
Sbjct: 712 CLDETRTLDYGQVFVQVSG------SRSEQRF-IVQGKVVVAKNPCLHPGDVRVLTAVNV 764
Query: 1224 PALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMDYTPAPPAL 1045
P LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD +LIP +QI PMDY+PAP
Sbjct: 765 PDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKP 824
Query: 1044 LDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFP 865
L+H+V IEEV+EYFTNY+VNDSLGIIANAHT FAD+EP KA S C LA+LFSIAVDFP
Sbjct: 825 LEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSIAVDFP 884
Query: 864 KTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVA 685
KTG+PAEIP L VKEYPDFMEK DKPTY+S+ VIGKLFRE+KD+AP I+S T +
Sbjct: 885 KTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERL 944
Query: 684 KKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSKSFDR 508
++ YD DMEVDG+EDY+D+A+Y+K YD+KLGNLM+YY IKTEAEIL IM +S+SF +
Sbjct: 945 ERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMSRSFTK 1004
Query: 507 KKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSYNEGM 328
++D EAIG+AVRSLRKEAR+WF EKG S +DLYAKASAWYHVTYHPSY+G YNEGM
Sbjct: 1005 QRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGLYNEGM 1064
Query: 327 KRDHYLSFPWCVYDKLVSIKKNNSTRTT---ESFEHQLIRGLRL 205
R+H+LSFPWCVYDKL+ IKK ++R S E RGLRL
Sbjct: 1065 NRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1473 bits (3813), Expect = 0.0
Identities = 746/1138 (65%), Positives = 883/1138 (77%), Gaps = 20/1138 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
M +T+++SGFPS +A V+ FLE + G GTV ALKIR +T G + +AIVQFTTT++
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I +L N RL Y S L MD DI+P+PR+ + E + LHFG Q S +KF A+W
Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
G +V VNFG G+RKL F L+H EYKL L +E IWQI+L + + K+LLIQ+ APR
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IYE+ + S + +++P LNYFRD D+ WVR TDFT SC IG SS++CLELP + +LP
Sbjct: 179 IYER-DVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPN 237
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
ENF YYKE E F LESG TFS++ DLVPIVGP G+ LPYNILF++N LVQNGCLAG
Sbjct: 238 FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297
Query: 2661 PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 2482
LD F+RLV P MP+ IE ALEKLYHLKECCYEP W NEQY KY + N P+ P
Sbjct: 298 SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357
Query: 2481 ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 2302
+SL+ GLVYV +VQITP KV+FCGPEV VSNRVLR Y E IDNF+RVSFVDE EK+ ST
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417
Query: 2301 DLSPRTKNEDK-KHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGF 2125
D+SPRT + ++ + T IY RILSTL+NGIVIGDKKF+FLAFSSSQLR+NS WMFAS G
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 2124 TAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVF 1945
TAA IR WMG F +IRNVA+Y+ARLGQSF SSTETL+VS R G +Y+F
Sbjct: 478 TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537
Query: 1944 SDGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1768
SDGIGKIS +FARKVA CG K +PSAFQIRY GYKGVVAVDP S KLSLRRSMFKY
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597
Query: 1767 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1588
S+N KLDVLA SK+Q CFLNRQLITLLSTLGV D FE+KQ+E VDQL+++LTDP +A E
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657
Query: 1587 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1408
AL++MSPGEN N+L+EMLLCGY+PD EPFLSMMLQTF+ASKLLEL+ KTRIFIPNGR+MM
Sbjct: 658 ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717
Query: 1407 GCLDETSTLEYGQVFVQVTSLGHDRYNESYQRTS-----------IKEGVVIVAKNPCLH 1261
GCLDET TLE+GQVFV+ + R+ Y + + +G V+VAKNPCLH
Sbjct: 718 GCLDETRTLEHGQVFVKFSG---SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLH 774
Query: 1260 PGDLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQI 1081
PGDLR+L+AV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD +LIP +QI
Sbjct: 775 PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834
Query: 1080 EPMDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACID 901
PMDYTP PP LDHDV IEEV+EYFTNY+VNDSLG+IANAHTA ADKE KA S+ C++
Sbjct: 835 SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894
Query: 900 LARLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQ 721
LAR FSIAVDFPKTG+PAEIPS+L +EYPDFMEK DKP+YES VIGKLFRE+KDIAP+
Sbjct: 895 LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954
Query: 720 TNSIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILG 541
T+SI+SFT DVA++CYD DMEVDGFEDYID+A+YYK YD+KLGNLM+YY IKTEAE+L
Sbjct: 955 TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014
Query: 540 RSIM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTY 364
S M +SKSF +K+D EAIG+AVRSL+KEAR+WF EKG+ S+ +D+ AKASAWYHVTY
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074
Query: 363 HPSYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTTESF-----EHQLIRGLRL 205
H +Y+G YNEGM RDH+LSFPWCVYDKL+ IK+ NS R S E Q RGL L
Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1466 bits (3796), Expect = 0.0
Identities = 746/1138 (65%), Positives = 895/1138 (78%), Gaps = 20/1138 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIR-PSKTKGRHPKSFAIVQFTTTK 3382
MG+TIQ+ GFP+ V+AE VK FLE G GTVYALK+R P K GR +AIVQFTT +
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGR---LYAIVQFTTKE 57
Query: 3381 SAETIFTLI--NQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLA 3208
+A+TI +L ++L Y S L M+ D VP+PR M E I LHFGC++S++KF
Sbjct: 58 AADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAV 117
Query: 3207 LWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLA 3028
LW+GV+V VNFGFG+RK+ FLL+H EY+LEL YE IW+I+L + + K+LLIQ+L
Sbjct: 118 LWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLG 177
Query: 3027 APRIYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCK 2851
APRI++K P Y++P N+F++ DD WVR TDFT S IGQS+ +C+ELPY +
Sbjct: 178 APRIFQKGIRSPD-LLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236
Query: 2850 LPGICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGC 2671
LP ENF YYKE E RF LE+GS +S+SLDLVPIVGPP G+ LPY ILFKIN LVQNGC
Sbjct: 237 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 296
Query: 2670 LAGPTLDASFFRLVHPQFMPIAY--IERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNV 2497
+AGP LD++F+RLV P P++ IE AL+KLYHLKECCYEP WL +QY KY + ++
Sbjct: 297 VAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 356
Query: 2496 PKPPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGE 2317
P PAISL++GLVYV RVQ+TPS+VYFCGPE+ VSNRVLR++ IDNF+R+SF+DE +
Sbjct: 357 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 416
Query: 2316 KMRSTDLSPRTKNE-DKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFA 2140
K+ STDLSPR + D T IY RILSTLRNGI+IGD+KF+FLAFSSSQLR++SAWMFA
Sbjct: 417 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 476
Query: 2139 SGDGFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNG 1960
S G TAA+IREWMG+FREIRNVAKY+ARLGQSFSSS ETL+V E
Sbjct: 477 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 536
Query: 1959 IKYVFSDGIGKISEKFARKVAKVCGIKSSP-SAFQIRYGGYKGVVAVDPKSVMKLSLRRS 1783
KYVFSDGIGK+S +FARKVA CG+K +P SAFQIRYGGYKGVVA DP S KLSLR S
Sbjct: 537 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDS 596
Query: 1782 MFKYTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDP 1603
M KY S+ KLDVLAWSK+Q CFLNRQLI+LLSTLG+ D IFEKKQ+E V QL++ILTDP
Sbjct: 597 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 656
Query: 1602 QKALEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPN 1423
KA EAL++MSPGEN N+L+E+L+CGYKPD EPFLSMMLQTF+ASKLLEL+ KTRIFIPN
Sbjct: 657 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 716
Query: 1422 GRAMMGCLDETSTLEYGQVFVQVTSLGHDR-------YNESYQRTS-IKEGVVIVAKNPC 1267
GR+MMGCLDET TL YGQVFVQ++ G+ + ++ S R I +G+V+VAKNPC
Sbjct: 717 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 776
Query: 1266 LHPGDLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPR 1087
LHPGD+RVL+AVNVPALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFV WD +LIPP+
Sbjct: 777 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 836
Query: 1086 QIEPMDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKAC 907
Q PMDYTPA LDHDV+IE+V+EYFTNY+VNDSLGIIANAHT FAD+EP KA S+ C
Sbjct: 837 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPC 896
Query: 906 IDLARLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIA 727
+ LA FSIAVDFPKTG+PAEIP HL+VKEYPDFMEK DKPTYES VIGKLFR +KDIA
Sbjct: 897 LQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 956
Query: 726 PQTNSIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEI 547
P T+ I+ FT +VA++ YD DMEVDGFED+ID+A Y+KG YD+KLGNLMDYY IKTEAEI
Sbjct: 957 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEI 1016
Query: 546 LGRSIM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRT-NDLYAKASAWYH 373
L SIM +SKSF +++D EAIG+AVR+LRKEAR WF+E KSGS T +D YAKASAWYH
Sbjct: 1017 LTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKE---KSGSDTEDDAYAKASAWYH 1073
Query: 372 VTYHPSYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNST--RTTESFEHQLIRGLRL 205
VTYHP Y+G YN GM RDH+LSFPWCVYD+LV IKK+ ++ + E Q +GLR+
Sbjct: 1074 VTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFRQGLRM 1131
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1448 bits (3749), Expect = 0.0
Identities = 735/1111 (66%), Positives = 873/1111 (78%), Gaps = 12/1111 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ G PS VSA +K+FLE Y G GT+ AL+I+ + K + A VQFT+ +
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIK--QPKSGVSMTHAKVQFTSLRL 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I +L Q L Y G+ LK +MD DI+PKPR + + + I LHFG Q+S+++F LWK
Sbjct: 59 AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
++V V FGFGLRK F L+H + EYKLELS E IWQIQLR + +N KFLLIQ+L AP+
Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IYEK D L+YF+++ DD WVR DFT SC IGQSSA+CLELP+ +LP
Sbjct: 178 IYEK----------DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPN 227
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
CENF YKE + +F LESG++FS +L LVPIVGPPQG LP+ ILFKIN+LVQNGCL+G
Sbjct: 228 FCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSG 287
Query: 2661 PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 2482
PTLD +FFR V PQ + I++IE ALEKLY+L+ECCYEPV WL+EQY Y S K V PA
Sbjct: 288 PTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYIS-KQVAGSPA 346
Query: 2481 ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 2302
ISL+ GLVYVRRVQITP KVYFCGPEV VSNRVLRNY E IDNF+RVSF+DE EK+ ST
Sbjct: 347 ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHST 406
Query: 2301 DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 2122
+SPR NE ++ T +YRRILS L+NGIVIGDKKFDFLA SSSQLRDNSAWMFAS G T
Sbjct: 407 VISPRMSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLT 465
Query: 2121 AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVFS 1942
AA IR MGDF +IRNVAKY+ARLGQSFSSS ETL V++ R+G YVFS
Sbjct: 466 AADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFS 525
Query: 1941 DGIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTS 1765
DGIGKIS + A +VA CG K+S PSAFQIRYGGYKGVVAVDP S KLSLR+SMFKY S
Sbjct: 526 DGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYES 585
Query: 1764 QNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEA 1585
+N LDVL+WSK++ CFLNRQLITLLSTLGV+D +FEKKQ+E VDQL++IL DP +A EA
Sbjct: 586 ENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEA 645
Query: 1584 LQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMG 1405
L++MSPGEN N+L+EML+CGYKPD EPFLSMMLQTF+A+KLLEL+ KTRIF+PNGR+MMG
Sbjct: 646 LELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMG 705
Query: 1404 CLDETSTLEYGQVFVQVTSLGHDRY---------NESYQRTSIKEGVVIVAKNPCLHPGD 1252
CLDET TLEYG+VFVQ++ G + + S+ I EG V+VAKNPCLHPGD
Sbjct: 706 CLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGD 765
Query: 1251 LRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPM 1072
+R+L AV+VPALHHMVDCVVFPQ+G+RPHP+ECSGSDLDGDIYFV WD DLIPPRQI PM
Sbjct: 766 VRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPM 825
Query: 1071 DYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLAR 892
DYTPAP +LDHDV IEEV+EYFTNY+ ND LGIIANAHT FADKE KA C +LA+
Sbjct: 826 DYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAK 885
Query: 891 LFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNS 712
LFSIA++FPKTG+PAEIP HLHVKEYPDFMEK +KPTYES VIGKLFRE+KD+AP
Sbjct: 886 LFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYD 945
Query: 711 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 532
++SFT DVA + YD DMEVDGFEDY+ +A+YYK +YDFKLG+LMD I+TE+EIL SI
Sbjct: 946 VRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSI 1005
Query: 531 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 355
M +SKSFD++KD EAI LAVRSLRKEARTWF + G+ + + +D+YA ASAWYHVTYHP
Sbjct: 1006 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPY 1065
Query: 354 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKKN 262
Y+G YNEGM DH+LSFPWCVYDKL+ IK++
Sbjct: 1066 YWGCYNEGMYHDHFLSFPWCVYDKLIQIKRD 1096
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1442 bits (3734), Expect = 0.0
Identities = 731/1125 (64%), Positives = 874/1125 (77%), Gaps = 7/1125 (0%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GF S VSA VK FLEGY G TVYALKIR K GR +FAIVQFT +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGR---AFAIVQFTRSSD 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
A I L NQRL Y S LK +M+ DIVPKPR + E + ++FGCQVS++KF LWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
+V +NFG G+RKLEFLL++ + +YKLEL YE IWQI+LR ++ K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IYEK + S +D+P LNYF+D DD WVR TDFT S CIGQSS + LELP+N +LP
Sbjct: 178 IYEK-EVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPN 236
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
ENF YYKE E R LESGS++S +L LVPIV P + ++LP+ ILFK+N LVQNGC+ G
Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296
Query: 2661 PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 2482
P LD +F+RLV P M YI+ ALEKLY+L+ECCYEP WL E+Y + + P
Sbjct: 297 PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2481 ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 2302
ISL+EGLVYVRRVQITPS+VYFCGPE+ VSNRVLR + IDNF+R+SFVDE EK+ ST
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2301 DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 2122
++ R + T IY+RILSTLRNGIVIG+K+F+FLAFSSSQLR+NSAWMFAS G T
Sbjct: 417 NVQARGRR-----TGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471
Query: 2121 AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVFS 1942
AA IR WMG+F +IRNVAKY+ARLGQSFSSSTETL+VS+ ++GIKYVFS
Sbjct: 472 AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531
Query: 1941 DGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTS 1765
DGIGKIS +FA+KVA C +K +PSAFQIR GG+KGVVA+DP S KLSLR+SM KY S
Sbjct: 532 DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591
Query: 1764 QNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEA 1585
+N KLDVLAWSK+Q CFLNRQLITLLSTLGV DR FEKKQ+EVVDQLN++LTDP +A EA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEA 651
Query: 1584 LQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMG 1405
L++MSPGEN N+L+EMLLCGYKPD EPFLSMML+TF+ASKLLEL+ K RIF+ GR+MMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711
Query: 1404 CLDETSTLEYGQVFVQVTSLGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNV 1225
CLDET TL YGQVFVQ + +R I +G VIVAKNPCLHPGD+RVLRAVNV
Sbjct: 712 CLDETRTLNYGQVFVQFSG-------SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNV 764
Query: 1224 PALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMDYTPAPPAL 1045
P LHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFV WD +LIP +QI+PMDY+PA
Sbjct: 765 PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTK 824
Query: 1044 LDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFP 865
LDH+V IEE++EYFTNY+VNDSLGII+NAHTAFAD+EP KA S+ C++LA+LFSIAVDFP
Sbjct: 825 LDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFP 884
Query: 864 KTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVA 685
KTG+PAEIP L VKEYPDFMEK DKP+Y+SH VIGKLFRE+K++AP SIK T +
Sbjct: 885 KTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKM 944
Query: 684 KKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSKSFDR 508
++ YD DMEV+GFEDYID+A+++K +YD+KLGNLMDYY +KTEAEILG IM +S+SF +
Sbjct: 945 QRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTK 1004
Query: 507 KKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSYNEGM 328
K+D EAI +AVRSLRKEAR+WF EKG++ +D YAKASAWY+VTYHPSY+G YNEGM
Sbjct: 1005 KRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGM 1064
Query: 327 KRDHYLSFPWCVYDKLVSIKKNNS----TRTTESFEHQLIRGLRL 205
RDH+LSFPWCVYDKL+ IKK + S EH+ RGL L
Sbjct: 1065 NRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1429 bits (3698), Expect = 0.0
Identities = 724/1125 (64%), Positives = 868/1125 (77%), Gaps = 7/1125 (0%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GF S VSA VK FLEGY G TVYALKIR K GR +FAIVQFT +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGR---AFAIVQFTRSSD 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
A I L NQRL Y S LK +M+ DIVPKPR + E + ++F C VS++KF LWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
+V +NFG G+RKLEFLL++ + +YKLEL YE IWQI+LR ++ K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IYEK + S +D+P LNYF+D DD WVR TDFT S CIGQSS +CLELP+N +LP
Sbjct: 178 IYEK-EVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPN 236
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
ENF YYKE E R LESGS++S +L LVPIV P + ++LP+ ILFK+N LVQNGC+ G
Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296
Query: 2661 PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 2482
P LD +F+RLV P M YI+ ALEKLY+L+ECCYEP WL E+Y + + P
Sbjct: 297 PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2481 ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 2302
ISL+EGLVYVRRVQITPS+VYFCGPE+ VSNRVLR + IDNF+R+SFVDE EK+ ST
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2301 DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 2122
++ R + T IY+RILSTLRNGIVIG+K+F+FLAFSSSQLR+NSAWMFAS G T
Sbjct: 417 NVQARGRR-----TGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471
Query: 2121 AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVFS 1942
AA IR WMG+F +IRNVAKY+ARLGQSFSSSTETL+VS+ ++GIKYVF
Sbjct: 472 AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFP 531
Query: 1941 DGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTS 1765
DGIGKIS +FA+KVA C +K +PSAFQIR GG+KGVVA+DP S KLSLR+SM KY S
Sbjct: 532 DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591
Query: 1764 QNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEA 1585
+N KLDVLAWSK+Q CFLNRQLITLLSTLGV D FEKKQ+EVVDQLN++LTDP +A EA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEA 651
Query: 1584 LQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMG 1405
L++MSPGEN N+L+EMLLCGYKPD EPFLSMML+TF+ASKLLEL+ K RIF+ GR+MMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711
Query: 1404 CLDETSTLEYGQVFVQVTSLGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNV 1225
CLDET TL YGQVFVQ + +R I +G VIVAKNPCLHPGD+RVLRAVNV
Sbjct: 712 CLDETRTLNYGQVFVQFSG-------SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNV 764
Query: 1224 PALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMDYTPAPPAL 1045
P LHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFV WD +LIP +QI+PMDY+PA
Sbjct: 765 PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTK 824
Query: 1044 LDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFP 865
LDH+V IEE++EYFTNY+VNDSLGII+NAHTAFAD+EPGKA S+ C++LA+LFSIAVDFP
Sbjct: 825 LDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFP 884
Query: 864 KTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVA 685
KTG+PAEIP L VKE+PDFMEK DKP+Y+S+ VIGKLFRE+K++AP SIK T +
Sbjct: 885 KTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKM 944
Query: 684 KKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSKSFDR 508
K+ YD DMEV+GF DYID+A++YK +YD+KLGNLMDYY +KTEAEIL IM +S+SF +
Sbjct: 945 KRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTK 1004
Query: 507 KKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSYNEGM 328
K+D E+I +AVRSLRKEAR+WF EKG++ +D YAKASAWY+VTYH SY+G YNEGM
Sbjct: 1005 KRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGM 1064
Query: 327 KRDHYLSFPWCVYDKLVSIKKNNS----TRTTESFEHQLIRGLRL 205
RDH+LSFPWCVYDKL+ IKK + S EH+ RG L
Sbjct: 1065 NRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 1420 bits (3677), Expect = 0.0
Identities = 727/1116 (65%), Positives = 874/1116 (78%), Gaps = 13/1116 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TI ISGFPS V+A+ VK FLEG+ G GTVYA+K+RP K G + +AIVQFT+
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGG--RLYAIVQFTSATQ 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I +L NQRL Y S LK + DIVPKPR M E ++L FGCQVS +KF LW+
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
G +V FG G+RK+ F L +++VEY+LELSYE IWQIQL ++++ K+LLIQ+ APR
Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IY+K + SG +DNP LN+F+++ DD WVR TDFT+SC IGQSS++CL+LP +LP
Sbjct: 179 IYKKVAP-NSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237
Query: 2841 ICENFHYYKEVESRF-FLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLA 2665
+NF YY+E E F ++ + FS DL PIV + LPY ILFKIN+LVQ GC+
Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIP 296
Query: 2664 GPTLDASFFRLVHPQFMP-IAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKP 2488
P LDASF+RLV I ++E ALEKL+HLKEC Y+P +L EQY KY ++ P
Sbjct: 297 WPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYS--RHPPNS 354
Query: 2487 PAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMR 2308
P ISL++GLVYVRRVQITP KV+FCGPEV VSNRVLR++S+ IDNF+RVSFVDE +KMR
Sbjct: 355 PVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMR 414
Query: 2307 STDLSPR--TKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASG 2134
STDL PR +K+ED K T+IYRRILS L+NGIVIGDK F FLAFSSSQLRDNS WMFASG
Sbjct: 415 STDLLPRMSSKSEDGK-TDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASG 473
Query: 2133 DGFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIK 1954
AA IR WMGDFR I+N AKY+ARLGQSF SSTE L+V+ ++ IK
Sbjct: 474 PDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIK 533
Query: 1953 YVFSDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFK 1774
YVFSDGIGKIS KFA++VA CG ++ PSAFQIRYGGYKGVVAVDP S +KLSLR+SM K
Sbjct: 534 YVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCK 593
Query: 1773 YTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKA 1594
+ S N KLDVL SK+Q CFLNRQLITL+STLGV D IFEKKQ E V+QL++ILTDP KA
Sbjct: 594 FESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKA 653
Query: 1593 LEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRA 1414
EAL++MSPGEN N+L+EML CGY+PD EP+LSMMLQTF+ASKLLEL+ K+RIFIPNGRA
Sbjct: 654 QEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRA 713
Query: 1413 MMGCLDETSTLEYGQVFVQVTSLGHDRYNESY-------QRTSIKEGVVIVAKNPCLHPG 1255
MMGCLDET TLEYGQVFVQ++S H +ES+ + + EG V VAKNPCLHPG
Sbjct: 714 MMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPG 773
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVL+AVN+P L+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD +LIP RQI P
Sbjct: 774 DVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPP 833
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
MDYTPAPP LD DV E++QEYF NYMVNDSLGIIANAHTAFADKE KA S C++LA
Sbjct: 834 MDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELA 893
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
+LFS+AVDFPKTG+PA IPSHL+VKE+PDFMEK D+P+YES++VIGKLFR +KDIAP +
Sbjct: 894 KLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLS 953
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
I+SFT DVA++CYD DMEV+GFEDY+++A+Y+K YD+KLGNL+DYY IK+EAE+L S
Sbjct: 954 HIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGS 1013
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHP 358
IM +SKSF R++D EAI LAVRSLRKEARTWF + + S ++DL+AKASAWY+VTYH
Sbjct: 1014 IMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAR-EGADSNSDDLFAKASAWYYVTYHH 1072
Query: 357 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTR 250
SY+G YNEGMKRDHYLSFPWCVYDKL+ IK+NN R
Sbjct: 1073 SYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRR 1108
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 1419 bits (3673), Expect = 0.0
Identities = 727/1127 (64%), Positives = 864/1127 (76%), Gaps = 10/1127 (0%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFPS +AE +K+FLE + G G+V+ALK+RP+K+ GR +AI+QF +
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGGRF---YAIIQFQSISQ 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I +L N RL Y S L HDIVPKPR + + ++LH GCQV+ DKF LW
Sbjct: 58 AEKIISLANARLWYGRSYLNARPA-HDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
+V V+FGFG+R L+F L +R Y+L+LSYE IWQI+L +Q+ R+ K+L+IQ+ PR
Sbjct: 117 TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPR 176
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDDWVRATDFTTSCCIGQSSAICLELPYNCKLPGI 2839
IY++ G+ Y++ +NYFRD DDWVR TDFT CIGQSS++CL L + +LP
Sbjct: 177 IYQQEVCSSGGNGYED--MNYFRDP-DDWVRTTDFTPGSCIGQSSSLCLVLTSDGELPDF 233
Query: 2838 CENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGP 2659
ENF YYK+ + +F LE+GSTFS++ DLVPIVG P G++LPY+ILFKIN LVQ GCL+GP
Sbjct: 234 EENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGP 293
Query: 2658 TLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAI 2479
TLD +F+RLV P+ + IE AL+KL +LKE CYEP WLNE+Y KY K PKP I
Sbjct: 294 TLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALI 353
Query: 2478 SLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTD 2299
SL+ GLVYVRRVQITPSKVYF GPEV VSNR+LR YS IDNF+RVSFVDE EK+ STD
Sbjct: 354 SLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTD 413
Query: 2298 LSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTA 2119
LSPRT + T IY R+LS LR+GIV+G KKF+FLAFSSSQLR+NS WMFA D +A
Sbjct: 414 LSPRTST---RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSA 470
Query: 2118 AKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVFSD 1939
IR MGDFR+IRNVAKY+ARLGQSF SSTETL+V R GIKYVFSD
Sbjct: 471 DTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSD 530
Query: 1938 GIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1762
GIGKIS FA +VAK CG K+ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S+
Sbjct: 531 GIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESE 590
Query: 1761 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1582
N KLDVLA SK+Q CFLNRQLITLLSTL V+D +F KKQ+ V QLN+ILTDP KA EAL
Sbjct: 591 NTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEAL 650
Query: 1581 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1402
+MS GE+ NVL+E+L+CGYKP+ EPFLSMMLQTF+ASKLLEL+ KTRIFIP+GRAMMGC
Sbjct: 651 DLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGC 710
Query: 1401 LDETSTLEYGQVFVQVTSLGHDRY------NESYQRTSIKEGVVIVAKNPCLHPGDLRVL 1240
LDET TLEYGQVFVQ + + + S I EG V+VAKNPCLHPGD+RVL
Sbjct: 711 LDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVL 770
Query: 1239 RAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMDYTP 1060
RAVNVP LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD +LIPP+QI+PMDYTP
Sbjct: 771 RAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTP 830
Query: 1059 APPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSI 880
APP +D DV IEEV+EYF NY+VNDSLGIIANAHT FAD + KA S C+ LA+LFSI
Sbjct: 831 APPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSI 890
Query: 879 AVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSF 700
AVDFPKTG+PAEIP L+ KEYPDFMEK DK TY SH VIG+LFRE+KDIAP +SI SF
Sbjct: 891 AVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASF 950
Query: 699 TWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VS 523
T VA KCYD DMEVDGFEDY+++A+Y+KG YD+KLGN++DYY IKTEAEIL SIM +S
Sbjct: 951 TRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLS 1010
Query: 522 KSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGS 343
KSF +++D +AI +AV+SLRKEAR WF EK T S +D+YAKASAWYHVTYHP+YFG
Sbjct: 1011 KSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGL 1070
Query: 342 YNEGMKRDHYLSFPWCVYDKLVSIKKN--NSTRTTESFEHQLIRGLR 208
YNEGM R H++SFPWCV+DKL IKK N R S E++L GLR
Sbjct: 1071 YNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLISSLENRLRYGLR 1117
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 1406 bits (3640), Expect = 0.0
Identities = 716/1117 (64%), Positives = 853/1117 (76%), Gaps = 11/1117 (0%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MGRTIQ+ GFP V+AE+VK+FLE Y G GTV AL+++ +K GR +++A VQFT +
Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKV-GR--RAYARVQFTNIRC 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AETI L RL Y S LK ++ D DIV PR E + L+FGCQ+S KF LWK
Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
G V V FG G++K+ F L H +VEYK++LSYE IWQI L ++ K L+IQ+ APR
Sbjct: 118 GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPR 177
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IY+K S G Y +YF + DD WVR TDFT S IGQSS++CL+LPY +LP
Sbjct: 178 IYKKLS----GSVY-----SYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRLPN 227
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 2662
+NF YYKE E+ F LE+G FS + DLVPIV PP ++LPY +LFK+ SLVQ GCL G
Sbjct: 228 FRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPG 287
Query: 2661 PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 2482
P LD SFF LV+P I YIE ALEKLY+LKECCY P WL EQY +YR+ K PK PA
Sbjct: 288 PKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPA 347
Query: 2481 ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 2302
I L++GLVYV RVQ+TP++VYF GPEV VSNRVLR+Y + IDNF+RVSFVDE +KM ST
Sbjct: 348 ICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYST 407
Query: 2301 DLSPRTK-NEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGF 2125
DLSPR ++ K T++Y R++S LR+G+ IGD+KFDFLAFSSSQLRDNS WMFA DG
Sbjct: 408 DLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGL 467
Query: 2124 TAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVF 1945
A IREWMGDF IRNVAKY+ARLGQSF SSTETL+VS+ +NG +Y F
Sbjct: 468 NADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV---KNGTEYTF 524
Query: 1944 SDGIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1768
SDGIGKISE FAR+VA CG++SS PSAFQIRYGGYKGVVAVDP S KLSLR SM KY
Sbjct: 525 SDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQ 584
Query: 1767 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1588
S N KLDVLAWSK+Q CFLNRQ+ITLLSTLGV+D +FEK+Q+E V QL+ +L DP +A E
Sbjct: 585 SDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQE 644
Query: 1587 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1408
AL +MSPGEN ++L+EML CGY+PD EPFLSMMLQTF+ASKLL+L+ K R+FIP R MM
Sbjct: 645 ALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMM 704
Query: 1407 GCLDETSTLEYGQVFVQVT-SLGHDRYNESYQRTSIKE------GVVIVAKNPCLHPGDL 1249
GCLDET L+YGQVFV+ + ++ +++SY ++ E G V+VAKNPCLHPGD+
Sbjct: 705 GCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDPVRGKVVVAKNPCLHPGDV 764
Query: 1248 RVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMD 1069
RVL AV+VP L HMVDCVVFP+ G RPHPNECSGSDLDGDIYFV WD DLIP +Q+EPMD
Sbjct: 765 RVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQVEPMD 824
Query: 1068 YTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 889
Y PAP LDHDV IEEV++YFTNY+VNDSLGIIANAHT FADKEP A S+ C++LARL
Sbjct: 825 YNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPCLELARL 884
Query: 888 FSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSI 709
FSIAVDF KTG+PAEIP HL VKEYPDFMEK DK Y S RVIGKLFRE+KDIAPQT+S
Sbjct: 885 FSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQTSSF 944
Query: 708 KSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM 529
+SFT +VA++ YD DMEVDGFED+IDEA+ +K YD+KLGNLM+YY +KTEAE+L IM
Sbjct: 945 RSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEVLSGGIM 1004
Query: 528 -VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSY 352
+SK+FDR+KD EAIG AVRSLR EAR+WF K G+ +D+YAKASAWY+VTYHP Y
Sbjct: 1005 KMSKTFDRRKDAEAIGAAVRSLRNEARSWF-----KKGTEADDVYAKASAWYYVTYHPDY 1059
Query: 351 FGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTTE 241
FG YNEGMKRDHYLSFPWCVYDKLV IKK+NS R ++
Sbjct: 1060 FGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRASQ 1096
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 1395 bits (3610), Expect = 0.0
Identities = 716/1131 (63%), Positives = 868/1131 (76%), Gaps = 13/1131 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TI++ GFP+ V+ VK F+E Y G GTV+A+K+R K GR P++FAI+QFTT S
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGK--GRVPRAFAIIQFTTANS 58
Query: 3378 AETIFTLIN---QRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLA 3208
A ++ + N + L Y S LK +M+ DIVP+PR + + + + L FGCQ+S +F
Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118
Query: 3207 LWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLA 3028
LWK DV+VNFG G+RK+ FL +H NV+YKLELSYE IW+I+L +N ++LLIQ+L
Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178
Query: 3027 APRIYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCK 2851
APR++E + S + +D+P N+F+D+ D+ W+RA DFT IGQSSAICLELP +
Sbjct: 179 APRVFEN-DVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQ 237
Query: 2850 LPGICENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGC 2671
LP ENF YY+E E ++ L++G FSQ+ LVPIV PP G+++ Y+ILFK+NSLVQ+ C
Sbjct: 238 LPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHAC 297
Query: 2670 LAGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPK 2491
LAGP LD F+RLV P+ MP +IE ALEK+Y+ KE CYEP WL +QY Y KN P+
Sbjct: 298 LAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR 357
Query: 2490 PPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKM 2311
PAISL+ GLVYVRRVQITP KVYFCGPE+ VSNRVLR++ E IDNF+RVSFVDE +K+
Sbjct: 358 SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKL 417
Query: 2310 RSTDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGD 2131
STDLS R++N K TEIY RILS L+NGIV+GDKKF+FLAFSSSQLR+NS WMFA +
Sbjct: 418 FSTDLSSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTE 474
Query: 2130 -GFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXER-NGI 1957
G TAA IR+WMG+F +IRNVAKY+ARLGQSF SSTETL+V R +G
Sbjct: 475 TGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGN 534
Query: 1956 KYVFSDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMF 1777
+YVFSDGIGKIS +FA+KVAK CG +PSAFQIRYGGYKGVVAVDPKS KLSLR+SM
Sbjct: 535 EYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMR 594
Query: 1776 KYTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQK 1597
KY S N KLDVLA SKFQ C+LNRQLI+LLSTLG++D +FEKKQ+E V+QLN+ILTD K
Sbjct: 595 KYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLK 654
Query: 1596 ALEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGR 1417
A E L +MS GE NVL+EML+CGYKP+EEPFLSMMLQTF+ASKLLEL+ K+RIFIP GR
Sbjct: 655 AQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGR 714
Query: 1416 AMMGCLDETSTLEYGQVFVQVTS-----LGHDRYNESYQRTSIKEGVVIVAKNPCLHPGD 1252
AMMGCLDET TLEYGQVFVQ ++ L D ++ + + +G V+VAKNPCLHPGD
Sbjct: 715 AMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPGD 774
Query: 1251 LRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPM 1072
+RVL+AV+VP L+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD +LIP R I+PM
Sbjct: 775 VRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDPM 834
Query: 1071 DYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLAR 892
DYT LDHDV IEEV+EYF NY+VNDSLGIIANAHT FADKE KA S C+ LAR
Sbjct: 835 DYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLAR 894
Query: 891 LFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNS 712
LFS AVDFPKTG+PA IP LHVKEYPDFMEK DKPTY+SH VIGKLFRE+K+I+ S
Sbjct: 895 LFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGS 954
Query: 711 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 532
I SFT VA+ YD++MEVDGF DY+D+A+Y+K YD+KLGNLMDYY IKTEAEILG +I
Sbjct: 955 ITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNI 1014
Query: 531 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKS-GSRTNDLYAKASAWYHVTYHP 358
M +SKSF++++D EAI +AVRSLRKEAR WF E + S ++D+YAKASAWYHVTYHP
Sbjct: 1015 MKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHP 1074
Query: 357 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTTESFEHQLIRGLRL 205
SY+G YNEGM RDHYLSF WCVY LV IKK + S E+ GLRL
Sbjct: 1075 SYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRSSLEYS-FSGLRL 1124
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 1375 bits (3559), Expect = 0.0
Identities = 709/1161 (61%), Positives = 860/1161 (74%), Gaps = 22/1161 (1%)
Frame = -2
Query: 3654 LSLSLSNTEMSLLDHLQNFLGKDIATKSTSKNMGRTIQISGFPSFVSAEVVKQFLEGYAG 3475
+S+ +SN +L + + + S GRT+Q+SGFP AE VK+FLE G
Sbjct: 42 VSIDISNLNDALKSSIFSKIETATLGCGVSSEGGRTVQVSGFPQGTCAEAVKKFLESITG 101
Query: 3474 VGTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQ--RLCYAGSVLKVWDMDH 3301
GTVY LKIR K+K + + FAIVQFTT+KSAE I++L Q L + S + V M++
Sbjct: 102 FGTVYHLKIRIHKSKP-NSRVFAIVQFTTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMEN 160
Query: 3300 DIVPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEY 3121
DIVP PR T E I L+FG Q+S++ F LW +V V FGFGL+K+ F L H V+Y
Sbjct: 161 DIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDY 220
Query: 3120 KLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSV 2941
KL+L YE IWQIQLR ++L++Q+ APRI++KP F S YD+P NY++D
Sbjct: 221 KLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSF-SSDIYDSPLFNYYKDFP 279
Query: 2940 DD-WVRATDFTTSCCIGQSSAICLELPYNCKLPGICENFHYYKEVESRFFLESGSTFSQS 2764
D+ WVR+ DFT SC IGQSS++CL LP ++P I ENF YYKE+ F L++GS+FS S
Sbjct: 280 DEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHS 339
Query: 2763 LDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPTLDASFFRLVHPQFMPIAYIERALE 2584
L LVPIV PP ++LPY ILF++NSLVQNG L GPTLD F+ L++ +P ++ER+LE
Sbjct: 340 LHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTLDTEFYNLLNG--LPSPFVERSLE 397
Query: 2583 KLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAISLNEGLVYVRRVQITPSKVYFCGPE 2404
+ L CC EP WL EQY KYR+L P P AISL GLVYV RVQ+TPSKVYF GPE
Sbjct: 398 DISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPE 457
Query: 2403 VIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDLSPR-TKNEDKKHTEIYRRILSTLR 2227
V VSNRVLR +S IDNF+R+SF+DE +RSTDLS R ++KHT +Y R+LSTL+
Sbjct: 458 VNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLK 517
Query: 2226 NGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTAAKIREWMGDFREIRNVAKYSARLG 2047
NGIVIGDKKF+FLAFSSSQLRDNSAWMF+ DG TAA IR+WMGDF IRNVAK +AR+G
Sbjct: 518 NGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMG 577
Query: 2046 QSFSSSTETLTVSRXXXXXXXXXXXERNGIKYVFSDGIGKISEKFARKVAKVCGI-KSSP 1870
QSF SSTETL V +NG KYVFSDGIGKIS +FA+KVA CG + +P
Sbjct: 578 QSFGSSTETLNVK---PEEVERISDIKNG-KYVFSDGIGKISLEFAKKVALKCGCSEKTP 633
Query: 1869 SAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQNIKLDVLAWSKFQTCFLNRQLITL 1690
SAFQIRYGGYKGVVAVDP S KLSLR SM KY+S N KLDVLA+SKFQ CFLNRQ+ITL
Sbjct: 634 SAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITL 693
Query: 1689 LSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEALQIMSPGENVNVLREMLLCGYKPDE 1510
LSTLGV+D +FE KQK+ V QL+ IL DP+ A EAL++MSPGENVNVL+EML CGY PD
Sbjct: 694 LSTLGVQDNVFETKQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDS 753
Query: 1509 EPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGCLDETSTLEYGQVFVQVTSLGHDRY 1330
EPFLSMMLQTF+ KL ELK KTRIFIPNGR+MMGCLDET LEYGQVFVQ +++G+ R
Sbjct: 754 EPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRL 813
Query: 1329 NE----------SYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNVPALHHMVDCVVFPQQ 1180
+E S QR + G VIVAKNPCLHPGD+R+L A++VPALHHMV+CVVFPQ+
Sbjct: 814 HEFGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQK 873
Query: 1179 GVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMDYTPAPPALLDHDVKIEEVQEYFT 1000
G RPHPNECSGSDLDGDIYFVSWD LIP Q PM+Y PAP LDH+V IEE++EYFT
Sbjct: 874 GKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFT 933
Query: 999 NYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFPKTGLPAEIPSHLHVK 820
NYM+NDSLGIIANAHT FADKEP KA+S C+DLA LFS+AVDFPKTG+PA+IP HL+VK
Sbjct: 934 NYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVK 993
Query: 819 EYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVAKKCYDYDMEVDGFED 640
EYPDFM+K DKPTY+S RVIGKLFRE+KD+ P T++I SFT VA K YD DMEVDGFE
Sbjct: 994 EYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFEL 1053
Query: 639 YIDEAYYYKGRYDFKLGNLMDYYKIKTEAEIL-GRSIMVSKSFDRKKDGEAIGLAVRSLR 463
Y+D+A++YK YDFKL LMD+Y IKTEAEI+ G + ++KSF +++D EAI LA+RSLR
Sbjct: 1054 YLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILSLAKSFTKRRDAEAIALAMRSLR 1113
Query: 462 KEARTWFEEKGT----KSGSRTNDLYAKASAWYHVTYHPSYFGSY--NEGMKRDHYLSFP 301
KE R WF+EK + S +D+YAKASAWYH+TYHP Y+GSY +G R H++SFP
Sbjct: 1114 KEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITYHPEYWGSYFEEDGRNRAHFISFP 1173
Query: 300 WCVYDKLVSIKKNNSTRTTES 238
WC+YDKL+ IK++ R S
Sbjct: 1174 WCIYDKLIHIKRHRIGRGRNS 1194
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1373 bits (3555), Expect = 0.0
Identities = 702/1111 (63%), Positives = 843/1111 (75%), Gaps = 13/1111 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP +SAE VK+FLE + G GTVYAL+++ SK GR ++FA VQF KS
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKG-GR--RAFAKVQFANNKS 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I L ++ L Y S LK W+M DIV +PR + + + + L+FGCQ+SD KF L
Sbjct: 58 AEFIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS 116
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
DV + FG GL+K+ F L+H + +YKL+LSYE IWQ+ L +N +FLL+Q+ APR
Sbjct: 117 K-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPR 175
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IY++ ++ ++F+++ DD WVR TDFT S IG SS++CLE +LP
Sbjct: 176 IYKR---------LEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPN 225
Query: 2841 ICENFHYYKEVESRFFLESGSTFS--QSLDLVPIVGPPQGLELPYNILFKINSLVQNGCL 2668
E+F YYKE ++F L++G TFS Q L LVPIV P+G+ELPY ILFKI+SL+Q+GC
Sbjct: 226 FSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCF 285
Query: 2667 AGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKP 2488
G L+ +FF+LV P+ IA IE ALEKLY+LKECCY+PV WL EQY +Y + +PK
Sbjct: 286 PGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKS 345
Query: 2487 PAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMR 2308
P I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE I+NF+RVSFVDE EK+
Sbjct: 346 PPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIH 405
Query: 2307 STDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDG 2128
STDL PR + T+IY RILSTLRNG +IGDK+F+FLAFSSSQLRDNS WMFAS G
Sbjct: 406 STDLLPRASTGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPG 465
Query: 2127 FTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYV 1948
TA IR WMGDFR+IRNVAKY+ARLGQSF SS ETL+V R +G Y+
Sbjct: 466 LTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYI 525
Query: 1947 FSDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1768
FSDGIGKIS FA +V CG++ +PS+FQIRYGGYKGVVAVDP S MKLSLR+SM KY
Sbjct: 526 FSDGIGKISADFAHRVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYE 585
Query: 1767 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1588
S NIKLDVL WSK+Q C+LNRQL+TLLSTLGV D + E+KQ E VDQL++IL D KA E
Sbjct: 586 SNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQE 645
Query: 1587 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1408
AL++MSPGEN N+L+EML CGY PD EPFLSMMLQTF+ASKLL+L+ +TRIFIPNGR MM
Sbjct: 646 ALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMM 705
Query: 1407 GCLDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPG 1255
GCLDE+ TLEYGQVFVQ + G ++ E S I +G V+VAKNPCLHPG
Sbjct: 706 GCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPG 765
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVLRAV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD DLIPPRQ++
Sbjct: 766 DIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQS 825
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
MDYTPAP LDHDV IEEV+EYFTNY++NDSLGIIANAH FAD+EP A S C LA
Sbjct: 826 MDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLA 885
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
+LFSIAVDFPKTG+PAEIPS L KEYPDFMEK DKPTY S +VIGKLF+++K+ PQ +
Sbjct: 886 QLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQAS 945
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
SI +FT DVA+K YD DM VDGFEDYIDEA+YYK YD KLGNLMDYY IKTEAEIL
Sbjct: 946 SIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGG 1005
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHP 358
IM SK+FDR+KD EAIG+AVR LRKEAR WF+ + S +D+ AKASAWYHVTYH
Sbjct: 1006 IMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRR-----SDIDDMLAKASAWYHVTYHH 1060
Query: 357 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKK 265
+Y+G YNEG+KRDH++SFPWCVYD+L+ IKK
Sbjct: 1061 TYWGLYNEGLKRDHFISFPWCVYDQLIQIKK 1091
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 1373 bits (3554), Expect = 0.0
Identities = 711/1136 (62%), Positives = 853/1136 (75%), Gaps = 18/1136 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP +SAE VK FLE + G GTVYAL+++ SK GR ++FA VQF KS
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKG-GR--RAFAKVQFANNKS 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
AE I L ++ L Y S LK W+M IV +PR + + + + L+FGCQ+SD KF L
Sbjct: 58 AEIIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
V V + FG GL+K+ F L++ + +YKL+LSYE IWQ+ L + +FLL+Q+ APR
Sbjct: 117 KV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPR 175
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IY++ ++ ++F+++ DD WVR TDFT S IG SS++CLE +LP
Sbjct: 176 IYKR---------LEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPN 225
Query: 2841 ICENFHYYKEVESRFFLESGSTFSQS---LDLVPIVGPPQGLELPYNILFKINSLVQNGC 2671
E+F YYKE ++ L++G TFS S L LVPIV P+G+ELPY ILFKI+SL+Q+GC
Sbjct: 226 FSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGC 285
Query: 2670 LAGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPK 2491
G L+ +FF+LV P+ IA IE ALEKLY+LKECCY+PV WL EQY +Y + +PK
Sbjct: 286 FPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPK 345
Query: 2490 PPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKM 2311
P+I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE EK+
Sbjct: 346 SPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKI 405
Query: 2310 RSTDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGD 2131
STDL PR + T+IY RILSTLRNG VIGDKKF+FLAFSSSQLRDNS WMFAS
Sbjct: 406 HSTDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRP 465
Query: 2130 GFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKY 1951
G TA IR WMG F++IRNVAKY+ARLGQSF SS ETL+V R +G Y
Sbjct: 466 GLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNY 525
Query: 1950 VFSDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKY 1771
+FSDGIGKIS FAR+VA CG++ +PS FQIRYGGYKGVVAVDP S MKLSLR SM KY
Sbjct: 526 IFSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKY 585
Query: 1770 TSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKAL 1591
S NIKLDVL WSK+Q C+LNRQL+TLLSTLGV+D +FE+KQ E VDQL++IL D KA
Sbjct: 586 ESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQ 645
Query: 1590 EALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAM 1411
EAL++MSPGEN N+L+EML CGY PD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGR M
Sbjct: 646 EALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTM 705
Query: 1410 MGCLDETSTLEYGQVFVQVTSLGHDR-YNESYQRTS--------IKEGVVIVAKNPCLHP 1258
MGCLDE+ TLEYGQVFVQ T G + Y ES+ I EG V+VAKNPCLHP
Sbjct: 706 MGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHP 765
Query: 1257 GDLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIE 1078
GD+RVLRAV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD DL+PPRQ +
Sbjct: 766 GDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQ 825
Query: 1077 PMDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDL 898
PMDYTPAP LDHDV IEEV+EYFTNY+VNDSLGIIANAH FAD+EP A S C L
Sbjct: 826 PMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQL 885
Query: 897 ARLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQT 718
A+LFSIAVDFPKTG+PAEIPS L KEYPDFMEK DKPTY S +VIGKLF+++KD PQ
Sbjct: 886 AQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQA 945
Query: 717 NSIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGR 538
+SI +FT DVA+K YD DM V+GFEDYIDEA+YYK YD KLGNLMDYY IKTEAEIL
Sbjct: 946 SSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSG 1005
Query: 537 SIM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYH 361
IM SK+FDR+KD +AIG+AVRSLRKEARTWF+ + S +D+ AKASAWYHVTYH
Sbjct: 1006 GIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR-----SDIDDMLAKASAWYHVTYH 1060
Query: 360 PSYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRT----TESFEHQLIRGLRL 205
+Y+G YNEG+KRDH++SFPWC+YD+L+ IKK + + S +QL R L L
Sbjct: 1061 HTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSRKLVL 1116
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 1362 bits (3524), Expect = 0.0
Identities = 700/1113 (62%), Positives = 845/1113 (75%), Gaps = 10/1113 (0%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP V+ + VK FLE G GTVYA+K+R K G P+ FAIVQFT+ +
Sbjct: 1 MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGG--PRVFAIVQFTSERH 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
A I T+ +RL Y S LK ++M+ DIVPKPRA++ + + ++FGCQVS K L LW
Sbjct: 59 ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
+V V+FG G+RKL F ++ +Y+LELSYE IWQI L Q + KFL+IQV+ AP+
Sbjct: 119 AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPK 178
Query: 3018 IYEK---PSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCK 2851
I+EK P F G ++++ D D+ W+R TDFT+S CIGQS+A CLELP +
Sbjct: 179 IFEKEDQPVNFLFG------MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVH 232
Query: 2850 LPGICENFHYYKEVE-SRFFLESGSTFSQSLD-LVPIVGPPQGLELPYNILFKINSLVQN 2677
+P ENF Y E S F ++SGS++S + + LVP+V PP G +LP+ ILFK+N+LVQN
Sbjct: 233 VPDFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQN 292
Query: 2676 GCLAGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNV 2497
CL GP LD F++L++P+ A I+ +LEKL+HL ECCYEP WL E+Y K S K +
Sbjct: 293 ACLPGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKL 352
Query: 2496 PKPPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGE 2317
P P ISL++GLVY+ RV +TP++VYF GPEV VSNRVLR+YSE I+NF+R+SFVDE E
Sbjct: 353 PLSPTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLE 412
Query: 2316 KMRSTDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFAS 2137
K+ S DLSPR+ + + T++Y RI S LR+GIVIGDKKF+FLAFSSSQLR+NSAWMFA
Sbjct: 413 KIHSMDLSPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470
Query: 2136 GDGFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGI 1957
D TAA IR WMGDF IRNVAKY+ARLGQSFSSS ETL V
Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDT 530
Query: 1956 KYVFSDGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSM 1780
+YVFSDGIGKIS +FARKVAK CG+ SPSAFQIRYGGYKGVVAVDP S KLSLR+SM
Sbjct: 531 RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590
Query: 1779 FKYTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQ 1600
K+ S N KLDVLAWSK+Q C+LNRQ+ITLLSTLGV+D +FEKKQ+EVVD+L++ILTDP
Sbjct: 591 SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650
Query: 1599 KALEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNG 1420
+A EAL +M+PGEN N+L+++LLCGYKPD EPFLSMMLQ F+ASKLLEL+ KTRIFIP G
Sbjct: 651 EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710
Query: 1419 RAMMGCLDETSTLEYGQVFVQVTS--LGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLR 1246
R+MMGCLDET TLEYGQV VQ ++ + RY I G V+VAKNPCLHPGD+R
Sbjct: 711 RSMMGCLDETRTLEYGQVVVQYSNPTMPGKRY--------IITGPVVVAKNPCLHPGDVR 762
Query: 1245 VLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEPMDY 1066
VL+AVNVPAL+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYF+ WD +LIPPR EPMDY
Sbjct: 763 VLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSEPMDY 822
Query: 1065 TPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLF 886
TP P +LDHDV IEEV+EYF NY+VNDSLGIIANAHTAFADKEP KA S CI+LAR F
Sbjct: 823 TPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKF 882
Query: 885 SIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIK 706
SIAVDFPKTG+ AEIP HL+VKEYPDFM+K DKPTYES VIGKLFRE+K+ AP SI+
Sbjct: 883 SIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPLISIR 942
Query: 705 SFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM- 529
SFT DVA K YD DMEV+GFE+YIDEA+++KG YD++LGNLMDYY IKTEAEIL IM
Sbjct: 943 SFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSGGIMR 1002
Query: 528 VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYF 349
+SKSF +++D E+IG AVR+LRKEA +WF K+ D AKASAWYHVTYH SY+
Sbjct: 1003 MSKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKNDF---DESAKASAWYHVTYHSSYW 1059
Query: 348 GSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTR 250
G YNEG+ RDH+LSF WCVYDKLV IKK N R
Sbjct: 1060 GVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGR 1092
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 1357 bits (3513), Expect = 0.0
Identities = 702/1117 (62%), Positives = 842/1117 (75%), Gaps = 14/1117 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP+ VSAE VK+FLE G GTVYA+K+R K G P+ FAIVQFT +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERY 58
Query: 3378 AETIFT-LINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALW 3202
A I T +RL Y S L +++D DIVPKPRA++ N + ++FGCQVS KFL LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118
Query: 3201 KGVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAP 3022
DV V+FG G+RKL F + +Y+LELSYE IWQI L Q R+ KFL+IQV+ AP
Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178
Query: 3021 RIYEKPSLFPSGHSYDNPT------LNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELP 2863
+I+EK D P ++++ D D+ W+R TDFT+S CIGQS+A CLELP
Sbjct: 179 KIFEKE---------DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 229
Query: 2862 YNCKLPGICENFHYYKEVE-SRFFLESGSTFSQSLD-LVPIVGPPQGLELPYNILFKINS 2689
+ +P ENF Y E S F +ESGS++S + + LVP+V PP G +LP+ ILFK+N+
Sbjct: 230 VHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNT 289
Query: 2688 LVQNGCLAGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRS 2509
LVQN CL GP LD ++L++P+ A I+ LEKL+HL E CYEP WL +QY + S
Sbjct: 290 LVQNACLPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSS 349
Query: 2508 LKNVPKPPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVD 2329
+P P ISL++GLVY+ RVQ+TP++VYF GPEV VSNRVLR+YS+ I+NF+RVSFVD
Sbjct: 350 KGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVD 409
Query: 2328 EGGEKMRSTDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAW 2149
E EK+RS DLSPR+ + + T++Y RI S LR+GIVIGDKKF+FLAFSSSQLR+NSAW
Sbjct: 410 EDLEKVRSMDLSPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAW 467
Query: 2148 MFASGDGFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXE 1969
MFA DG T+A IR WMGDF IRNVAKY+ARLGQSFSSS ETL V
Sbjct: 468 MFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEII 527
Query: 1968 RNGIKYVFSDGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSL 1792
G +YVFSDGIGKIS +FAR+VAK CG+ SPSAFQIRYGGYKGVVAVDP S KLSL
Sbjct: 528 SLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSL 587
Query: 1791 RRSMFKYTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSIL 1612
R+SM K+ S+N KLDVLAWSK+Q C++NRQLITLLSTLGV+D +F+KKQ+EVVD+L++IL
Sbjct: 588 RKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAIL 647
Query: 1611 TDPQKALEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIF 1432
TDP +A EAL +M+PGEN N+L+ ++LCGYKPD EPFLSMMLQ F+ASKLLEL+ KTRIF
Sbjct: 648 TDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIF 707
Query: 1431 IPNGRAMMGCLDETSTLEYGQVFVQVTSLGHDRYNESYQ--RTSIKEGVVIVAKNPCLHP 1258
I GR+MMGCLDET TLEYGQV VQ Y++ + R I G V+VAKNPCLHP
Sbjct: 708 ISGGRSMMGCLDETRTLEYGQVVVQ--------YSDPMRPGRRFIITGPVVVAKNPCLHP 759
Query: 1257 GDLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIE 1078
GD+RVL AVNVPAL+HMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFV WD++LIPPR E
Sbjct: 760 GDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSE 819
Query: 1077 PMDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDL 898
PMDYTP P +LDHDV IEEV+EYF NY+VNDSLGIIANAHTAFADKEP KA S CI+L
Sbjct: 820 PMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIEL 879
Query: 897 ARLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQT 718
AR FS+AVDFPKTG+ AEIP HLHVKEYPDFMEK DKPTYES VIGKLFRE+K+ AP
Sbjct: 880 ARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPL 939
Query: 717 NSIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGR 538
SIKSFT DVA K YD DMEVDGFE+Y+DEA++YK YDFKLGNLMDYY IKTEAEIL
Sbjct: 940 ISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSG 999
Query: 537 SIM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYH 361
IM +SKSF +++D E+IG AVR+LRKE + F ++ S AKASAWYHVTYH
Sbjct: 1000 GIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEENES------AKASAWYHVTYH 1053
Query: 360 PSYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTR 250
SY+G YNEG+ RDH+L F WCVYDKLV IKK N+ R
Sbjct: 1054 SSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKKTNAGR 1090
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1353 bits (3502), Expect = 0.0
Identities = 704/1133 (62%), Positives = 845/1133 (74%), Gaps = 21/1133 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP+ VSAE VK+FLE G GTVYA+K+R K G P+ +AIVQFT+ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
I T +RL Y S LK ++++ DIVPKPRA++ + + FGCQVS KFL LW
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
DV V+FG G+RKL F + +Y+LELSYE IWQI L Q R+ KFL+IQV+ AP+
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 3018 IYEKPSLFPSGHSYDNPT------LNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPY 2860
I+EK D P ++++ D D+ W+R TDFT+S CIGQS+A CLELP
Sbjct: 179 IFEKE---------DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPV 229
Query: 2859 NCKLPGICENFHYYKEVE-SRFFLESGSTFSQSLD-LVPIVGPPQGLELPYNILFKINSL 2686
+ +P ENF Y E S F +ESGS++S + + LVP+V PP G LP+ ILFK+N+L
Sbjct: 230 HLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTL 289
Query: 2685 VQNGCLAGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSL 2506
VQN CL+GP LD F+RL++ + A I+ LEKL+HL ECCYEP WL ++Y K+ S
Sbjct: 290 VQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISK 349
Query: 2505 KNVPKPPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDE 2326
+P P ISL++GLVY+ RVQ+TP++VYF GPEV VSNRVLR+YS+ I+NF+RVSFVDE
Sbjct: 350 GKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDE 409
Query: 2325 GGEKMRSTDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWM 2146
EK+RS DLSPR+ + + T++Y RI S LR+GIVIGDKKF+FLAFSSSQLR+NSAWM
Sbjct: 410 DLEKVRSMDLSPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWM 467
Query: 2145 FASGDGFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXER 1966
FA D TAA IR WMGDF IRNVAKY+ARLGQSFSSS ETL V
Sbjct: 468 FAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS 527
Query: 1965 NGIKYVFSDGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLR 1789
G +YVFSDGIGKIS +FARKVA+ CG+ SPSAFQIRYGGYKGVVAVDP S KLSLR
Sbjct: 528 LGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLR 587
Query: 1788 RSMFKYTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILT 1609
+SM K+ S+N KLDVLAWSK+Q C++NRQLITLLSTLGV D +FEKKQ+EVVD+L++ILT
Sbjct: 588 KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILT 647
Query: 1608 DPQKALEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFI 1429
P +A EAL +M+PGEN N+L+ ++LCGYKPD EPFLSMMLQ F+ASKLLEL+ KTRIFI
Sbjct: 648 HPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFI 707
Query: 1428 PNGRAMMGCLDETSTLEYGQVFVQVTSLGHDRYNESYQ--RTSIKEGVVIVAKNPCLHPG 1255
GR+MMGCLDET TLEYGQV VQ Y++ + R I G V+VAKNPCLHPG
Sbjct: 708 SGGRSMMGCLDETRTLEYGQVVVQ--------YSDPMRPGRRFIITGPVVVAKNPCLHPG 759
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVL+AVNVPAL+HMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFV WD++L+PPR EP
Sbjct: 760 DVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 819
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
MDYTP P +LDHDV IEEV+EYF NY+VNDSLGIIANAHTAFADKEP KA S CI+LA
Sbjct: 820 MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 879
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
+ FS AVDFPKTG+ A IP HL+VKEYPDFMEK DKPTYES VIGKLFRE+K+ AP
Sbjct: 880 KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 939
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
SIKSFT DVA K YD DMEVDGFE+Y+DEA+Y K YDFKLGNLMDYY IKTEAEIL
Sbjct: 940 SIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGG 999
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWF---EEKGTKSGSRTNDLYAKASAWYHVT 367
IM +SKSF +++D E+IG AVR+LRKE + F EE+ +S AKASAWYHVT
Sbjct: 1000 IMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES--------AKASAWYHVT 1051
Query: 366 YHPSYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTR-----TTESFEHQL 223
YH SY+G YNEG+ RDH+LSF WCVYDKLV IKK N R T E +H L
Sbjct: 1052 YHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVL 1104
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 1352 bits (3500), Expect = 0.0
Identities = 695/1114 (62%), Positives = 832/1114 (74%), Gaps = 13/1114 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP +SAEVVK FLE Y G GTV AL+++ SK R +FA VQF S
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSR---AFAKVQFADNIS 57
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
A+ I TL N RL + S LK W+M DIV + RA + + I L+FGCQ+SDDKF L
Sbjct: 58 ADKIITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGS 116
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
+V + FG GL+K F L+ + +YKL+LSYE IWQ+ L +N +FLLIQ+ APR
Sbjct: 117 -TEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 3018 IYEKPSLFPSGHSYDNPTLNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPYNCKLPG 2842
IY++ +N ++F+++ DD WVR TDF S IG SS++CL+ +LP
Sbjct: 176 IYKR---------LENSCYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPN 225
Query: 2841 ICENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCL 2668
E+F +Y E E+ L++G TF SQ LVP V PP+G+ +PY ILFKI+SLVQ+GC+
Sbjct: 226 FEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCI 285
Query: 2667 AGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKP 2488
GP L+ FFRLV P+ +A IE ALEKLY++KECCY+PV WL EQY Y + PK
Sbjct: 286 PGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 2487 PAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMR 2308
P+I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE EK+
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 2307 STDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDG 2128
STDL P+ T IY RILSTLR G VIGDKKF+FLAFSSSQLRDNS WMFAS G
Sbjct: 406 STDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPG 465
Query: 2127 FTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXERNGIKYV 1948
TA IR WMGDF +I+NVAKY+ARLGQSF SS ETL+V R +G YV
Sbjct: 466 LTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYV 523
Query: 1947 FSDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1768
FSDGIGKIS FA +VA CG++ +PSAFQIRYGGYKGVV VDP S MKLSLR+SM KY
Sbjct: 524 FSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYE 583
Query: 1767 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1588
S NIKLDVL WSK+Q C+LNRQLITLLSTLGV+D + E+KQKE VDQL++IL D KA E
Sbjct: 584 SDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQE 643
Query: 1587 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1408
AL++MSPGEN N+L+ ML CGYKPD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGR MM
Sbjct: 644 ALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMM 703
Query: 1407 GCLDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPG 1255
GCLDE+ TLEYGQVFVQ T GH +++ S I +G V+VAKNPCLHPG
Sbjct: 704 GCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPG 763
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVL+AVNV ALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFV WD+D+IPPRQ++P
Sbjct: 764 DIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQP 823
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
M+Y PAP LDHDV IEEV+EYFTNY+VNDSLGIIANAH FAD+EP A S C LA
Sbjct: 824 MEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLA 883
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
LFSIAVDFPKTG+PAEIPS L KEYPDFM+K DK +Y S RVIGKLFR++KD APQ +
Sbjct: 884 ELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQAS 943
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
SI +FT DVA++ YD DMEVDGFEDYIDEA+ YK YD KLGNLMDYY IKTEAEIL
Sbjct: 944 SIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 1003
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHP 358
IM SK+FDR+KD EAI +AVR+LRKEAR WF+ + + +D+ KASAWYHVTYHP
Sbjct: 1004 IMKASKTFDRRKDAEAISVAVRALRKEARAWFKRR-----NDIDDMLPKASAWYHVTYHP 1058
Query: 357 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS 256
+Y+G YN+G+KR H++SFPWCVYD+L+ IKK+ +
Sbjct: 1059 TYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKA 1092
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1350 bits (3494), Expect = 0.0
Identities = 703/1133 (62%), Positives = 844/1133 (74%), Gaps = 21/1133 (1%)
Frame = -2
Query: 3558 MGRTIQISGFPSFVSAEVVKQFLEGYAGVGTVYALKIRPSKTKGRHPKSFAIVQFTTTKS 3379
MG+TIQ+ GFP+ VSAE VK+FLE G GTVYA+K+R K G P+ +AIVQFT+ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58
Query: 3378 AETIFTLINQRLCYAGSVLKVWDMDHDIVPKPRATMPNSEVIILHFGCQVSDDKFLALWK 3199
I T +RL Y S LK ++++ DIVPKPRA++ + + FGCQVS KFL LW
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 3198 GVDVVVNFGFGLRKLEFLLTHRNVEYKLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPR 3019
DV V+FG G+RKL F + +Y+LELSYE IWQI L Q R+ KFL+IQV+ AP+
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 3018 IYEKPSLFPSGHSYDNPT------LNYFRDSVDD-WVRATDFTTSCCIGQSSAICLELPY 2860
I+EK D P ++++ D D+ W+R TDFT+S CIGQS+A CLELP
Sbjct: 179 IFEKE---------DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPV 229
Query: 2859 NCKLPGICENFHYYKEVE-SRFFLESGSTFSQSLD-LVPIVGPPQGLELPYNILFKINSL 2686
+ +P ENF Y E S F +ESGS++S + + LVP+V PP G LP+ ILFK+N+L
Sbjct: 230 HLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTL 289
Query: 2685 VQNGCLAGPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSL 2506
VQN CL+GP LD F+RL++ + A I+ LEKL+HL ECCYEP WL ++Y K+ S
Sbjct: 290 VQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISK 349
Query: 2505 KNVPKPPAISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDE 2326
+P P ISL++GLVY+ RVQ+TP++VYF GPEV VSNRVLR+YS+ I+NF+RVSFVDE
Sbjct: 350 GKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDE 409
Query: 2325 GGEKMRSTDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWM 2146
EK+RS DLSPR+ + + T++Y RI S LR+GIVIGDKKF+FLAFSSSQLR+NSAWM
Sbjct: 410 DLEKVRSMDLSPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWM 467
Query: 2145 FASGDGFTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXER 1966
FA D TAA IR WMGDF IRNVAKY+ARLGQSFSSS ETL V
Sbjct: 468 FAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS 527
Query: 1965 NGIKYVFSDGIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLR 1789
G +YVFSDGIGKIS +FARKVA+ CG+ SPSAFQIRYGGYKGVVAVDP S KLSLR
Sbjct: 528 LGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLR 587
Query: 1788 RSMFKYTSQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILT 1609
+SM K+ S+N KLDVLAWSK+Q C++NRQLITLLSTLGV D +FEKKQ+EVVD+L++ILT
Sbjct: 588 KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILT 647
Query: 1608 DPQKALEALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFI 1429
P +A EAL +M+PGEN N+L+ ++LCGYKPD EPFLSMMLQ F+ASKLLEL+ KTRIFI
Sbjct: 648 HPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFI 707
Query: 1428 PNGRAMMGCLDETSTLEYGQVFVQVTSLGHDRYNESYQ--RTSIKEGVVIVAKNPCLHPG 1255
GR+MMGCLDET TLEYGQV VQ Y++ + R I G V+VAKNPCLH G
Sbjct: 708 SGGRSMMGCLDETRTLEYGQVVVQ--------YSDPMRPGRRFIITGPVVVAKNPCLHSG 759
Query: 1254 DLRVLRAVNVPALHHMVDCVVFPQQGVRPHPNECSGSDLDGDIYFVSWDRDLIPPRQIEP 1075
D+RVL+AVNVPAL+HMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFV WD++L+PPR EP
Sbjct: 760 DVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 819
Query: 1074 MDYTPAPPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 895
MDYTP P +LDHDV IEEV+EYF NY+VNDSLGIIANAHTAFADKEP KA S CI+LA
Sbjct: 820 MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 879
Query: 894 RLFSIAVDFPKTGLPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 715
+ FS AVDFPKTG+ A IP HL+VKEYPDFMEK DKPTYES VIGKLFRE+K+ AP
Sbjct: 880 KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 939
Query: 714 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 535
SIKSFT DVA K YD DMEVDGFE+Y+DEA+Y K YDFKLGNLMDYY IKTEAEIL
Sbjct: 940 SIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGG 999
Query: 534 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWF---EEKGTKSGSRTNDLYAKASAWYHVT 367
IM +SKSF +++D E+IG AVR+LRKE + F EE+ +S AKASAWYHVT
Sbjct: 1000 IMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES--------AKASAWYHVT 1051
Query: 366 YHPSYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTR-----TTESFEHQL 223
YH SY+G YNEG+ RDH+LSF WCVYDKLV IKK N R T E +H L
Sbjct: 1052 YHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVL 1104