BLASTX nr result
ID: Akebia25_contig00005950
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00005950
(6312 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 2046 0.0
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 1939 0.0
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 1928 0.0
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 1920 0.0
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 1919 0.0
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 1916 0.0
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 1904 0.0
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 1875 0.0
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 1874 0.0
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1864 0.0
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 1808 0.0
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 1783 0.0
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas... 1771 0.0
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 1727 0.0
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put... 1724 0.0
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 1678 0.0
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 1672 0.0
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 1656 0.0
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 1654 0.0
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr... 1647 0.0
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 2046 bits (5302), Expect = 0.0
Identities = 1104/1889 (58%), Positives = 1306/1889 (69%), Gaps = 39/1889 (2%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEE+ SS ++DG I+ +RF LAT QEIC QL NPFLGLPLE GKCES
Sbjct: 1 MEED--SSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCES 58
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXX-GKIRHNGESGRSS 641
CGTAEPG+C+GHFGYIELPIPI+HP HVSE K+ +NG + +
Sbjct: 59 CGTAEPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQLL 118
Query: 642 NIPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTL 821
PC C D P++ V E R +GA FL+LK+PSRSR DG W+FL +YG+RYG +L R L
Sbjct: 119 -APC--CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRIL 175
Query: 822 LPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLS 1001
LP EV+EIL+RIPE+T KKL KGY PQDGYILQ +PVPPNCLSVPDISDG SIMSSDLS
Sbjct: 176 LPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLS 235
Query: 1002 ASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGV 1181
SMLKKVLKQIE+IK SRSG PNF +H++EAN+LQ ++ QYL VRGT K S +TRFG
Sbjct: 236 VSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGS 295
Query: 1182 SKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKV 1361
SKE NESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLP EIAQ+ITFEE+V
Sbjct: 296 SKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERV 355
Query: 1362 TERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRP 1541
N +LQ LVD K CLTY+DG+STYSLREGS GHT L+ GQV+ RRIMDGDIVFINRP
Sbjct: 356 NVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRP 415
Query: 1542 PSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 1721
P+THKHSLQA SVY+H+DHTVKINPLICGPL ADFDGDCVHLFYPQSL AKAEVLELFSV
Sbjct: 416 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSV 475
Query: 1722 EQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCA 1901
E+QLLSSHSG +FE F +KA AQQL MFVS SL PALLKS C+
Sbjct: 476 EKQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCS 535
Query: 1902 GSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSK 2081
G WTALQILQTALP+ F+CIGERH IS+S I+KVD+NRDVLQSL +EI++S+F +KG
Sbjct: 536 GPCWTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPN 595
Query: 2082 DALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNEL 2261
+ L+ F+SLQPLLMEN+F EG+SV L+DFSIP +T+++Q+NV+DIS LL++LRS YNEL
Sbjct: 596 EVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNEL 655
Query: 2262 VELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYS 2441
++LQ ENHLR KV V NFIL SALGNLIDSKS+S+INKVV ++GKFYS
Sbjct: 656 LQLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYS 715
Query: 2442 RTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRG 2621
RTLVE M F SK+ G DYPS FGLI+SCFF GL+PYEE+VHSIS+RE++VRSSRG
Sbjct: 716 RTLVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRG 775
Query: 2622 LTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVL 2801
L+EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG T Q +PAGEPVGVL
Sbjct: 776 LSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVL 835
Query: 2802 AATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYC 2981
AATA+SNPAYKAVLDSSPSSNSSWELMKEILLC+V FKNDL RRVILYLNDC CG+KYC
Sbjct: 836 AATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYC 895
Query: 2982 KENAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXR 3158
+ENAA+LV+NQLKK SLKD AV F++EY KQ SS LVGHIH
Sbjct: 896 RENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNV 955
Query: 3159 SMHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQD 3338
SM EV +C+ETI+SFRKKKN +G K+I LS ECC FQ SC S+ S +PCL F WQ
Sbjct: 956 SMQEVCQKCEETINSFRKKKN-VGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQG 1014
Query: 3339 TSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELA 3518
D LE I I+A+ ICP+LL TI+KGD RV + NIIWISPDTTTW+RNPC+++KGELA
Sbjct: 1015 NRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELA 1074
Query: 3519 LEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKR 3698
L+IVLEKA VKQ GDAWRIVLD+CLPV HLIDTRRSIPYAIKQVQ+LLGISCAFDQ V+R
Sbjct: 1075 LDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQR 1134
Query: 3699 LSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPR 3878
LS SV MVAKGVLKEHL L+ANSMTC GNLIGFNSGGYKAL R+LN+QVPFTEATLFTPR
Sbjct: 1135 LSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPR 1194
Query: 3879 KCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQ 4058
KCFE+A+EKCH DSLSSIVASC WGKHV VGTG+RFD+LWD KE+G +DGGID+Y+FL
Sbjct: 1195 KCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLH 1254
Query: 4059 LVRS-SDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKT 4235
LVRS S +E +TAC SPE++ + +P+F+DSAE Q
Sbjct: 1255 LVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQ------ 1308
Query: 4236 LEKEKSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPKSSVWPGWGTDKVQT 4415
+ WE + + S G +W V+Q N + K S W WGTDKV
Sbjct: 1309 --------NTWENH---VPGSGG--DWAVNQ-----NKETTASTLKPSAWSSWGTDKV-- 1348
Query: 4416 QVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGT-LAEADKIGQNKNDGKSQW 4592
+ GW D TWGT A+ + D
Sbjct: 1349 TMKDTFSTREPDESSRSAGW-------------DDKGTWGTDKAQNTAFRRTHEDS---- 1391
Query: 4593 PSQSDMPKKWPSQSSDPAAGTWG-TLAEADKTGQNKNDGKSQ---------WPSQ--SSD 4736
P S + + A+ WG + EADKTG NKNDGK Q W +
Sbjct: 1392 PRSSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEK 1451
Query: 4737 PSADTWGTLAEADKTGQNKKE--------------GKSQWPSQ-SSDPSTDTWGTLAEAD 4871
+ T+G ++ TG KK + W + DP ++
Sbjct: 1452 TTQSTYGGISST--TGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDS 1509
Query: 4872 KTGQNKNDGKSQWPS-QSSDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESP 5048
TG++ K Q PS Q DP+ +W + K N+ W +SP
Sbjct: 1510 STGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGW-----------DSP 1558
Query: 5049 RYGGWNINESQKQPQVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEE-- 5222
GWN E Q Q W + G+ + ++ + WG E + PS +
Sbjct: 1559 GAKGWNDVEEQSQ---------WNQRGS----AVKNDQSESSHGWGPSNEQNQLPSSQGW 1605
Query: 5223 -SPSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKSQSSNAGDWKIKKGRAA 5387
SP+ G + +++ + WGQ G+ EG+ GW SN +WK KK R
Sbjct: 1606 GSPNAGAGHESETQSQ----WGQPSGKKSRPEGSRGW--------GSNNTEWKNKKNRPN 1653
Query: 5388 MSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDP 5567
G +D D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+QSI+RIMHQ+ YNDGDP
Sbjct: 1654 KPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1711
Query: 5568 LTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYR 5747
L+ADDQSY+LD VFN HPDK KMG+G++YVMV++HSSF ++RCFY+VSTDGH+EDFSYR
Sbjct: 1712 LSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYR 1771
Query: 5748 KCMENFIKDKYPGMAESFIKKYFRKPRSG 5834
KC+ENFIK+KYP AE+FI KYFR+PR+G
Sbjct: 1772 KCLENFIKEKYPDNAETFIGKYFRRPRAG 1800
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 1939 bits (5024), Expect = 0.0
Identities = 1042/1767 (58%), Positives = 1232/1767 (69%), Gaps = 38/1767 (2%)
Frame = +3
Query: 648 PCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLP 827
PC C D P++ V E R +GA FL+LK+PSRSR DG W+FL +YG+RYG +L R LLP
Sbjct: 180 PC--CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLP 237
Query: 828 IEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSAS 1007
EV+EIL+RIPE+T KKL KGY PQDGYILQ +PVPPNCLSVPDISDG SIMSSDLS S
Sbjct: 238 SEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVS 297
Query: 1008 MLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSK 1187
MLKKVLKQIE+IK SRSG PNF +H++EAN+LQ ++ QYL VRGT K S +TRFG SK
Sbjct: 298 MLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSK 357
Query: 1188 ETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTE 1367
E NESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLP EIAQ+ITFEE+V
Sbjct: 358 EPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNV 417
Query: 1368 RNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPS 1547
N +LQ LVD K CLTY+DG+STYSLREGS GHT L+ GQV+ RRIMDGDIVFINRPP+
Sbjct: 418 HNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPT 477
Query: 1548 THKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQ 1727
THKHSLQA SVY+H+DHTVKINPLICGPL ADFDGDCVHLFYPQSL AKAEVLELFSVE+
Sbjct: 478 THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEK 537
Query: 1728 QLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGS 1907
QLLSSHSG +FE F +KA AQQL MFVS SL PALLKS C+G
Sbjct: 538 QLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGP 597
Query: 1908 RWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDA 2087
WTALQILQTALP+ F+CIGERH IS+S I+KVD+NRDVLQSL +EI++S+F +KG +
Sbjct: 598 CWTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEV 657
Query: 2088 LEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNELVE 2267
L+ F+SLQPLLMEN+F EG+SV L+DFSIP +T+++Q+NV+DIS LL++LRS YNEL++
Sbjct: 658 LKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQ 717
Query: 2268 LQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRT 2447
LQ ENHLR KV V NFIL SALGNLIDSKS+S+INKVV ++GKFYSRT
Sbjct: 718 LQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRT 777
Query: 2448 LVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLT 2627
LVE M F SK+ G DYPS FGLI+SCFF GL+PYEE+VHSIS+RE++VRSSRGL+
Sbjct: 778 LVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLS 837
Query: 2628 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAA 2807
EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG T Q +PAGEPVGVLAA
Sbjct: 838 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAA 897
Query: 2808 TAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKE 2987
TA+SNPAYKAVLDSSPSSNSSWELMKEILLC+V FKNDL RRVILYLNDC CG+KYC+E
Sbjct: 898 TAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRE 957
Query: 2988 NAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
NAA+LV+NQLKK SLKD AV F++EY KQ SS LVGHIH SM
Sbjct: 958 NAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSM 1017
Query: 3165 HEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDTS 3344
EV +C+ETI+SFRKKKN +G K+I LS ECC FQ SC S+ S +PCL F WQ
Sbjct: 1018 QEVCQKCEETINSFRKKKN-VGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNR 1076
Query: 3345 SDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELALE 3524
D LE I I+A+ ICP+LL TI+KGD RV + NIIWISPDTTTW+RNPC+++KGELAL+
Sbjct: 1077 DDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALD 1136
Query: 3525 IVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRLS 3704
IVLEKA VKQ GDAWRIVLD+CLPV HLIDTRRSIPYAIKQVQ+LLGISCAFDQ V+RLS
Sbjct: 1137 IVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLS 1196
Query: 3705 TSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRKC 3884
SV MVAKGVLKEHL L+ANSMTC GNLIGFNSGGYKAL R+LN+QVPFTEATLFTPRKC
Sbjct: 1197 KSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKC 1256
Query: 3885 FERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQLV 4064
FE+A+EKCH DSLSSIVASC WGKHV VGTG+RFD+LWD KE+G +DGGID+Y+FL LV
Sbjct: 1257 FEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLV 1316
Query: 4065 RS-SDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
RS S +E +TAC SPE++ + +P+F+DSAE Q
Sbjct: 1317 RSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQ-------- 1368
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPKSSVWPGWGTDKVQTQV 4421
+ WE + + S G +W V+Q N + K S W WGTDKV +
Sbjct: 1369 ------NTWENH---VPGSGG--DWAVNQ-----NKETTASTLKPSAWSSWGTDKV--TM 1410
Query: 4422 XXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGT-LAEADKIGQNKNDGKSQWPS 4598
GW D TWGT A+ + D P
Sbjct: 1411 KDTFSTREPDESSRSAGW-------------DDKGTWGTDKAQNTAFRRTHEDS----PR 1453
Query: 4599 QSDMPKKWPSQSSDPAAGTWG-TLAEADKTGQNKNDGKSQ---------WPSQ--SSDPS 4742
S + + A+ WG + EADKTG NKNDGK Q W + +
Sbjct: 1454 SSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEKTT 1513
Query: 4743 ADTWGTLAEADKTGQNKKE--------------GKSQWPSQ-SSDPSTDTWGTLAEADKT 4877
T+G ++ TG KK + W + DP ++ T
Sbjct: 1514 QSTYGGISST--TGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSST 1571
Query: 4878 GQNKNDGKSQWPS-QSSDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRY 5054
G++ K Q PS Q DP+ +W + K N+ W +SP
Sbjct: 1572 GKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGW-----------DSPGA 1620
Query: 5055 GGWNINESQKQPQVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEE---S 5225
GWN E Q Q W + G+ + ++ + WG E + PS + S
Sbjct: 1621 KGWNDVEEQSQ---------WNQRGS----AVKNDQSESSHGWGPSNEQNQLPSSQGWGS 1667
Query: 5226 PSYGGWNIRKSEKRPCDAWGQRDGE----EGTGGWNKSEGKSQSSNAGDWKIKKGRAAMS 5393
P+ G + +++ + WGQ G+ EG+ GW SN +WK KK R
Sbjct: 1668 PNAGAGHESETQSQ----WGQPSGKKSRPEGSRGW--------GSNNTEWKNKKNRPNKP 1715
Query: 5394 PGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLT 5573
G +D D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+QSI+RIMHQ+ YNDGDPL+
Sbjct: 1716 QGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLS 1773
Query: 5574 ADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKC 5753
ADDQSY+LD VFN HPDK KMG+G++YVMV++HSSF ++RCFY+VSTDGH+EDFSYRKC
Sbjct: 1774 ADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKC 1833
Query: 5754 MENFIKDKYPGMAESFIKKYFRKPRSG 5834
+ENFIK+KYP AE+FI KYFR+PR+G
Sbjct: 1834 LENFIKEKYPDNAETFIGKYFRRPRAG 1860
Score = 122 bits (306), Expect = 2e-24
Identities = 59/90 (65%), Positives = 67/90 (74%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEE+ SS ++DG I+ +RF LAT QEIC QL NPFLGLPLE GKCES
Sbjct: 1 MEED--SSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCES 58
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSE 554
CGTAEPG+C+GHFGYIELPIPI+HP HVSE
Sbjct: 59 CGTAEPGQCEGHFGYIELPIPIYHPGHVSE 88
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 1928 bits (4994), Expect = 0.0
Identities = 1028/1884 (54%), Positives = 1272/1884 (67%), Gaps = 34/1884 (1%)
Frame = +3
Query: 291 ENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCG 470
E SS +++G IT ++F LAT QEICT QL NPFLGLPLE GKCESCG
Sbjct: 2 EEASSSTILEGEITGIKFGLATHQEICTASISNCAISHASQLSNPFLGLPLEFGKCESCG 61
Query: 471 TAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIP 650
T+E GKC+GHFGYIELPIPIFHP HVSE +G + +
Sbjct: 62 TSEAGKCEGHFGYIELPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERML 121
Query: 651 CSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPI 830
S C D ++ + E + DG+ LQLK PS+SR G WNFLE+YGFRYGD RTLLP
Sbjct: 122 SSCCEDASQVSIGEIKPTDGSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDGHIRTLLPC 181
Query: 831 EVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASM 1010
EV+E+LKRIP+ET KKLA KGY PQDGYIL ++PVPPNCLSVP+ISDG S+MS+D S SM
Sbjct: 182 EVMEMLKRIPQETRKKLAAKGYFPQDGYILSQIPVPPNCLSVPEISDGVSVMSADPSISM 241
Query: 1011 LKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKE 1190
LKKVLKQ+EII+ SRSG PNF + VEAN+LQ + QYL VRGT K S D + RFGV+KE
Sbjct: 242 LKKVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDIDARFGVNKE 301
Query: 1191 TNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTER 1370
N SSTKAWLEKMRTLFIRKGSGFSSRSVITGDA++RVNE+G+P EIAQ+ITFEEKV +
Sbjct: 302 LNASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKVNDH 361
Query: 1371 NRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPST 1550
N LQELVD K CLTYKDG STYSLREGS GHT L+ GQV+ RRIMDGD+VF+NRPP+T
Sbjct: 362 NIRYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTT 421
Query: 1551 HKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQ 1730
HKHSLQA VY+H+DH VKINPLICGPL ADFDGDC+HLFYPQSLAAKAEVLELFSVE+Q
Sbjct: 422 HKHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 481
Query: 1731 LLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSR 1910
LLSSHSG MF+ F DKA AQQLAMF S SL PALLK+ A S
Sbjct: 482 LLSSHSGKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSY 541
Query: 1911 WTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDAL 2090
WTA QILQTALPA F+C G+ +L+++SEI+ +DF+ + ++ ++I +SVFF+KG +D L
Sbjct: 542 WTAFQILQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVL 601
Query: 2091 EVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNELVEL 2270
+ F+SLQPLLMEN+F EG+SV L+DF + ++ +D+Q+N+QD S LL+HLRSTYNE VE
Sbjct: 602 KFFDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEF 661
Query: 2271 QVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRTL 2450
Q++N +RSVKV V +FIL+ SALG+LIDSKS+S+INK+V D+G+FYS+TL
Sbjct: 662 QLQNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTL 721
Query: 2451 VEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLTE 2630
VED+ S HSK+ S +DYPS +GL++SCFF GL+PYE +VHSI++REV+VRSSRGL+E
Sbjct: 722 VEDVASLCHSKYP-SDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSE 780
Query: 2631 PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAAT 2810
PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG G+ Q +PAGEPVGVLAAT
Sbjct: 781 PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAAT 840
Query: 2811 AISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKEN 2990
A+SNPAYKAVLDS+PSSNSSWELMKEILLCKV FKN+L RRVILYLN+C CG+KYC+E
Sbjct: 841 AMSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRER 900
Query: 2991 AAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTN-AALVGHIHXXXXXXXXXXRSMH 3167
AA LV+NQLKKVSLKD AV F++EY ++S S N A LVGHIH +H
Sbjct: 901 AACLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVH 960
Query: 3168 EVLLECQETISSFR-----KKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSW 3332
++L +CQETI+SFR KKK +G K L SE C F SC + S PCL F
Sbjct: 961 DILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFL 1020
Query: 3333 QDTSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGE 3512
Q T Q A++ICP+LL TI+KGDPR+ SANIIWI PDTTTW+R+P ++QKGE
Sbjct: 1021 QATDDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGE 1080
Query: 3513 LALEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVV 3692
AL+IVLEK+V+KQ+GDAWR VLDSCLPV HLIDTRRSIPYAIKQ+Q+LLG+SCAFDQ V
Sbjct: 1081 WALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAV 1140
Query: 3693 KRLSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFT 3872
+RLST+V MVAKGVLKEHL L+ANSMTC GN +GFNS GYKAL R+LN+QVPFTEATLFT
Sbjct: 1141 QRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFT 1200
Query: 3873 PRKCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNF 4052
PRKCFERAAEKCHMDSL+SIVASC WGKHVAVGTG RFD+LWD +E+ L ++GG+DV+NF
Sbjct: 1201 PRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNF 1260
Query: 4053 LQLVRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIK 4232
L +V +++ E+ T SPE N RP+F+D E D++
Sbjct: 1261 LHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFD-DKLG 1319
Query: 4233 TLEKEKSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPKSSVWPGWGTDKVQ 4412
L + +SNWE +SS SNG ++W V + N G T+ VW WGT+K +
Sbjct: 1320 DLPE----KSNWEKDSSFHTDSNGGKDWSVDK-------NVG-TVAVPDVWSSWGTEKGK 1367
Query: 4413 TQVXXXXXXXXXXXXXXXGGWNTMESQ--KWPSQLSDPADTWGTLAEADKIGQNKNDGKS 4586
TQ N+ E+Q S + D + WG K + S
Sbjct: 1368 TQ-----------------DSNSAEAQLDSKKSSVLDTSSAWGK-------NPAKENTTS 1403
Query: 4587 QWPSQSDMPKKWPSQ--SSDPAAGTWG------TLAEADKTGQNKNDGKSQW-PSQSSDP 4739
W + + W + D +A G + A T + D S W + + +
Sbjct: 1404 TWGTTTASENDWCGRGVGEDDSATLSGKKSGVLNTSSAWATNTAREDAASAWGTNPAKEN 1463
Query: 4740 SADTWGTLAEADKTGQNKKEGKSQWPSQSSDPST--DTWGTLAEADKTGQNKNDGKSQWP 4913
S TWGT + ++ G+ S S S+ DT + A T + D S W
Sbjct: 1464 STSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDT----SSAWATNTAREDAASAWG 1519
Query: 4914 SQ-SSDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRYGGWNINESQ--- 5081
+ + + TWGT ++ + G S K S W N ++
Sbjct: 1520 KHPAKENTTSTWGTTTASENDWCGRGVGHDDSASL--SGKKSSVLNTSSVWATNTAREDA 1577
Query: 5082 -----KQPQVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEESPSYGGWN 5246
K P E TWG E D G P Q TKP ++S S GW+
Sbjct: 1578 TSAWGKNPAKENTTSTWGTTTASENDWCGREAGKVEPVDLQ----PTKPQDDSASLSGWD 1633
Query: 5247 IRKSEKRPCD---AWGQRDGEEGTGGWNKSEG-KSQSSNAGDWKIKKGRAAMSPGKFDDR 5414
+ + WGQ G++ N+ EG ++ S+ G+WK K R SPG +D
Sbjct: 1634 SPTGDGNSGERNHQWGQHRGDQTKK--NRFEGARNWVSSPGEWK-NKNRPPKSPGMVNDN 1690
Query: 5415 NDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYV 5594
+ A ++T TRQRLD FTSEEQ++LS++EP+++S++RIMHQS YNDGDPL+ DDQS+V
Sbjct: 1691 STMGA--LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFV 1748
Query: 5595 LDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKD 5774
LD+VFNYHPDK KMG G++++ VN+H SFQD+RCF++VSTDG EDFSYRKC++N+I++
Sbjct: 1749 LDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTEDFSYRKCLDNYIRE 1808
Query: 5775 KYPGMAESFIKKYF--RKPRSGNP 5840
K+P +AE+FI KYF R R NP
Sbjct: 1809 KFPDLAETFIGKYFSRRGNRERNP 1832
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 1920 bits (4975), Expect = 0.0
Identities = 1037/1916 (54%), Positives = 1301/1916 (67%), Gaps = 66/1916 (3%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEEN SS +++G+I +RF LAT +EICT QL NPFLGLPLE GKCES
Sbjct: 1 MEEN-TSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+EPGKC+GHFGYIELPIPI+HP H+SE G +
Sbjct: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELKHMLSLLCLKCLKMKSTKFQIKNDGVAQR 119
Query: 645 IPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLL 824
+ S C + ++ + + +T DGA +L+LK+PS+ RL G WNFLE+YGFRYGD L RTLL
Sbjct: 120 LLSSCCEEASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTRTLL 179
Query: 825 PIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSA 1004
EV E+LKRIPEET KKLAGKGY PQDGYIL+ +PVPPNCLSVPDISDG S MSSDLS
Sbjct: 180 ASEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 239
Query: 1005 SMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVS 1184
+MLKKVLKQ+EII+ SRSG PNF + EVE+NDLQLAV QYL VRGT K+S D + RFGVS
Sbjct: 240 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 299
Query: 1185 KETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVT 1364
++ N S+TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIG+P EIAQ+ITFEE+V
Sbjct: 300 QDPN-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 358
Query: 1365 ERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPP 1544
N + LQELVD+K CLTY DG S+YSLREGS GHT L+ GQV+ RRIMDGD VFINRPP
Sbjct: 359 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPP 418
Query: 1545 STHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVE 1724
+THKHSLQA SVY+H+DHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEVLELFSVE
Sbjct: 419 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 478
Query: 1725 QQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAG 1904
+QLLSSH+G MF+ F DKA QQLAMF L PAL K++C+
Sbjct: 479 KQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCS- 537
Query: 1905 SRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKD 2084
+RWTALQILQ+ LP F+ G+R+LI +SE++K DF+RD + S+ +EI++S+FF+KG ++
Sbjct: 538 ARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEE 597
Query: 2085 ALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNELV 2264
LE F+SLQPLLMEN+F +G+SV L+DFS+ K+ ++Q+ +Q + LL+H ST NELV
Sbjct: 598 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELV 657
Query: 2265 ELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSR 2444
+LQ+ENH+R VK+ V FILK S LG LIDSKS+S+++KVV DRGKFYS+
Sbjct: 658 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 717
Query: 2445 TLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGL 2624
TLVED+ S F + + ++YP+ +GLIK CFF GL+PYEE+ HSIS+REV+VRSSRGL
Sbjct: 718 TLVEDIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 776
Query: 2625 TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLA 2804
+EPGTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQF+Y N S S +PAGEPVGVLA
Sbjct: 777 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAV-NARKSHSLFPAGEPVGVLA 835
Query: 2805 ATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCK 2984
ATA+SNPAYKAVLDSSPSSN+SWELMKEILLC+V+F ND RRVILYLNDC CG+KYC+
Sbjct: 836 ATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQ 895
Query: 2985 ENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
E AA++V+NQLK+VSLKD AV FL+EYK+ PE + + LVGHIH SM
Sbjct: 896 ERAAYMVKNQLKRVSLKDAAVEFLIEYKK---PEIISDDEGLVGHIHLNKILLEDLRISM 952
Query: 3165 HEVLLECQETISSFRKKKNL--LGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQD 3338
H++L +CQET+ SF KKK + + Q K LSVSECC FQQSC + S +PCL F +
Sbjct: 953 HDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRG 1012
Query: 3339 TSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELA 3518
S L+ +S ++ANMI P+LL TI+KGDPR+YSANIIWISPDTT W+RNP + +KGELA
Sbjct: 1013 ASDSYLDKLSGVLANMIYPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELA 1072
Query: 3519 LEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKR 3698
L++VLEK+VVKQ+GDAWR VLDSCLPVFHLIDTRRS+PYAIKQVQ+LLG+SCAF+Q V+R
Sbjct: 1073 LDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQR 1132
Query: 3699 LSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPR 3878
LS SV MVAKGVLKEHL L+ANSMTC G+L+GFNSGGYKAL RSLNVQVPFTEATLFTPR
Sbjct: 1133 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPR 1192
Query: 3879 KCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQ 4058
KCFE+AAEKCH D+LSS+VA+C WGKHVAVGTG+RFD+LW + N+D G+DVY+FL
Sbjct: 1193 KCFEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1252
Query: 4059 LVRSSDE-RESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQ------ 4217
+VRSS ES+T C SPE+N +P+F+D E Q
Sbjct: 1253 MVRSSTGIEESDTGC---LGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENK 1309
Query: 4218 ---YDQIKTLEKEKSSESNWE-MNSSLIKQSNGSR---EWKVSQPLNIDNGNAGMTMPKS 4376
+ + KSSE WE + +SL K S+G R W S ++ + P
Sbjct: 1310 QENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPS- 1368
Query: 4377 SVWPGWGTDKVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADT---WGTLAE 4547
GWGT+ W KW + S A + WGT A
Sbjct: 1369 ----GWGTE---------------------ASWGESSCDKWENVGSPAAKSFSEWGTEAS 1403
Query: 4548 ADKIGQNKNDG-------KSQWPSQS-------DMPKKWPSQSSDPAAGTWGTLAEADKT 4685
K +K + S W S++ D + +S P +G WG A K+
Sbjct: 1404 WGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSG-WGAKASWGKS 1462
Query: 4686 GQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKKE--------GKSQWPSQSSDPST 4841
++K + + + + PS+ WGT A DK+ + E S W +++ D
Sbjct: 1463 SEDKLE---EVETTVAKPSS-AWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGK 1518
Query: 4842 DT----WGTLAEADKT-GQNKNDGKSQWPSQSSDPSAGTWGT--LAEADKTGQNKNDGKS 5000
+ W A A + G+N ++ S W +++S W T L + D G + S
Sbjct: 1519 SSDWSEWKDHANATASWGRNGSEENSGWDTKAS------WKTKALDKLDDVGSAVENSSS 1572
Query: 5001 QWGQ--------WKNSAKPSEESP----RYGGWNINESQKQPQVEEPGETWGRHG-TEEA 5141
WG W++S+KPS + GGWN+ +++ WG+ TE A
Sbjct: 1573 VWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDD-----SCWGKQKLTENA 1627
Query: 5142 DVTGGNPNDGNPQWGQWRESHTKPSEESP-SYGGWNIRKSEKRPCDAWGQRDGEEGTGGW 5318
T + WG ++ HT+ P S W++ DA G + E G
Sbjct: 1628 KGT------DDSSWG--KQKHTENESPQPASSNAWDLP-------DATGGSETEMQVWGQ 1672
Query: 5319 NKSE----GKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQ 5486
++ E + +S++G+WK KK R SPG +D D + + ++T TRQRLD FTSEEQ
Sbjct: 1673 SRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFTSEEQ 1730
Query: 5487 NILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMV 5666
+ILS VEPI++SI+RIMHQS YNDGD L+ADD+S++ D+VFNYHPDK KMG+G+++ V
Sbjct: 1731 DILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKV 1790
Query: 5667 NKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 5834
+KH SFQD+RC ++VSTDG ++DFSYRKC+E+FI+ KYP + + FI KYFR+PRSG
Sbjct: 1791 DKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSG 1846
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 1919 bits (4972), Expect = 0.0
Identities = 1038/1917 (54%), Positives = 1298/1917 (67%), Gaps = 67/1917 (3%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEEN SS +++G+I +RF LAT +EICT QL NPFLGLPLE GKCES
Sbjct: 1 MEEN-TSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+EPGKC+GHFGYIELPIPI+HP H+SE G +
Sbjct: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELKRMLSLLCLKCLKMKSTKLQIKNDGVAQR 119
Query: 645 IPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLL 824
+ S C + ++ + + +T DGA +L+LK+PS+ RL G WNFLE+YGFRYGD L RTLL
Sbjct: 120 LLSSCCEEASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTRTLL 179
Query: 825 PIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSA 1004
EV E+LKRIPEET KKLAGKGY PQDGYIL+ +PVPPNCLSVPDISDG S MSSDLS
Sbjct: 180 ASEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 239
Query: 1005 SMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVS 1184
+MLKKVLKQ+EII+ SRSG PNF + EVE+NDLQLAV QYL VRGT K+S D + RFGVS
Sbjct: 240 AMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVS 299
Query: 1185 KETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVT 1364
++ N S+TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIG+P EIAQ+ITFEE+V
Sbjct: 300 QDPN-STTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 358
Query: 1365 ERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPP 1544
N + LQELVD+K CLTY DG S+YSLREGS GHT L+ GQV+ RRIMDGD VFINRPP
Sbjct: 359 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPP 418
Query: 1545 STHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVE 1724
+THKHSLQA SVY+H+DHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEVLELFSVE
Sbjct: 419 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 478
Query: 1725 QQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAG 1904
+QLLSSH+G MF+ F DKA AQQLAMF L PAL K+ C+G
Sbjct: 479 KQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHCSG 538
Query: 1905 SRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKD 2084
RWTALQILQ+ LP F+ G+R+LI +SE++ DF+RD + S+ +EI++S+FF+KG ++
Sbjct: 539 PRWTALQILQSVLPPGFDSCGDRYLIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGPEE 598
Query: 2085 ALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNELV 2264
LE F+SLQPLLMEN+F +G+SV L+DFS+ K+ ++Q+ +Q + LL+H ST NELV
Sbjct: 599 VLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELV 658
Query: 2265 ELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSR 2444
+LQ+ENH+R VK+ V FILK S LG LIDSKS+S+++KVV DRGKFYS+
Sbjct: 659 DLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSK 718
Query: 2445 TLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGL 2624
TLVED+ S F + + ++YP+ +GLIK CFF GL+PYEE+ HSIS+REV+VRSSRGL
Sbjct: 719 TLVEDIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGL 777
Query: 2625 TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLA 2804
+EPGTLFKNLMA+LRDVVICYDGTVRNVCSNSIIQF+Y N S S +PAGEPVGVLA
Sbjct: 778 SEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAV-NARKSHSLFPAGEPVGVLA 836
Query: 2805 ATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCK 2984
ATA+SNPAYKAVLDSSPSSN+SWELMKEILLC+V+F ND RRVILYLNDC CG+KYC+
Sbjct: 837 ATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQ 896
Query: 2985 ENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
E AA++V+NQLK+VSLKD AV FL+EYK+ PE + + LVGHIH SM
Sbjct: 897 ERAAYMVKNQLKRVSLKDAAVEFLIEYKK---PEIISDDEGLVGHIHLNKILLEDLRISM 953
Query: 3165 HEVLLECQETISSFRKKKNL--LGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQD 3338
H++L +CQET+ SF KKK + + Q K LS+SECC FQQSC + S +PCL F +
Sbjct: 954 HDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRG 1013
Query: 3339 TSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELA 3518
S L+ +S ++ANMI P+LL TI+KGDPR+ SANIIWISPDTT W+RNP + +KGELA
Sbjct: 1014 ASDSYLDKLSGVLANMIYPVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELA 1073
Query: 3519 LEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKR 3698
L++VLEK+VVKQ+GDAWR VLDSCLPVFHLIDTRRS+PYAIKQVQ+LLG+SCAF+Q V+R
Sbjct: 1074 LDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQR 1133
Query: 3699 LSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPR 3878
LS SV MVAKGVLKEHL L+ANSMTC G+L+GFNSGGYKAL RSLNVQVPFTEATLF PR
Sbjct: 1134 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1193
Query: 3879 KCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQ 4058
KCFE+AAEK H D+LSS+VA+C WGKHVAVGTG+RFD+LW + N+D G+DVY+FL
Sbjct: 1194 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1253
Query: 4059 LVRSSDE-RESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKT 4235
+VRSS E +T C SPE+N +PIF+D E Q
Sbjct: 1254 MVRSSTGIEELDTGC---LGEEVDGLEDEFDWSLSPEHNLCSDKPIFEDLVEDQSWLENK 1310
Query: 4236 LEKE---------KSSESNWE-MNSSLIKQSNGSR---EWKVSQPLNIDNGNAGMTMPKS 4376
E E KSSE WE + +SL K S+G R W S ++ + P
Sbjct: 1311 QENENWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPS- 1369
Query: 4377 SVWPGWGTDKVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADT---WGTLAE 4547
GWGT+ W S KW + S A + WGT A
Sbjct: 1370 ----GWGTE---------------------ASWGESSSDKWENVGSPAAKSFSEWGTEAS 1404
Query: 4548 ADKIGQNKNDG--------KSQWPSQS-------DMPKKWPSQSSDPAAGTWGTLAEADK 4682
K +K + S W S++ D + +S P +G WG A K
Sbjct: 1405 WGKSFGDKPENVRSPAAKTSSGWGSEASWGKSPGDRQENVGRSASKPLSG-WGAKASWGK 1463
Query: 4683 TGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKKE--------GKSQWPSQSSDPS 4838
+ ++K + + + + PS+ WGT A DK+ + E S W +++ D
Sbjct: 1464 SSEDKLE---EVETTVAKPSS-AWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSG 1519
Query: 4839 TDT----WGTLAEADKT-GQNKNDGKSQWPSQSSDPSAGTWGT--LAEADKTGQNKNDGK 4997
+ W A A + G+N ++ S W +++S W T L + D G +
Sbjct: 1520 KSSDWSEWKDHANATASWGRNGSEENSGWDTKAS------WNTKALDKLDDVGSAVENSS 1573
Query: 4998 SQWGQ--------WKNSAKPSEESP----RYGGWNINESQKQPQVEEPGETWGRHG-TEE 5138
S WG W++S+KPS + GGWN+ +++ +WG+ TE
Sbjct: 1574 SVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDD-----SSWGKQKLTEN 1628
Query: 5139 ADVTGGNPNDGNPQWGQWRESHTKPSEESP-SYGGWNIRKSEKRPCDAWGQRDGEEGTGG 5315
A T + WG ++ HT+ P S W++ DA G + E G
Sbjct: 1629 AKGT------DDSSWG--KQKHTENESSQPASSNAWDLP-------DATGGSETEMQVWG 1673
Query: 5316 WNKSE----GKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEE 5483
++ E + +S++G+WK KK R SPG +D D + + ++T TRQRLD FTSEE
Sbjct: 1674 QSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFTSEE 1731
Query: 5484 QNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVM 5663
Q+ILSDVEPI++SI+RIMHQS YNDGD L+ADD+S++ D+VFNYHPDK KMG+G+++
Sbjct: 1732 QDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFK 1791
Query: 5664 VNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 5834
V+KH SFQD+RC ++VSTDG ++DFSYRKC+E+FI+ KYP + FI KYFR+PRSG
Sbjct: 1792 VDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRRPRSG 1848
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 1916 bits (4964), Expect = 0.0
Identities = 1047/1936 (54%), Positives = 1277/1936 (65%), Gaps = 82/1936 (4%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
M+EN SS + DG IT +RF LAT +EICT QL NPFLGLPLE GKCES
Sbjct: 1 MDENSQSS-IFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCES 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXG---KIRHNGESGR 635
CGT+EPGKC+GHFG+I LPIPI+HP H+SE +I+ NG + R
Sbjct: 60 CGTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAER 119
Query: 636 SSNIPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCR 815
+ + +I + E + DGA FL+LK+PSRSRL DG WNFLE+YGFRYGDD R
Sbjct: 120 LLSCCEVSIKECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTR 179
Query: 816 TLLPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSD 995
LLP EV++ILKRIP ET KKL+GKGY PQDGYILQ++PVPPNCLSVP +SDG ++MSSD
Sbjct: 180 PLLPCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSD 239
Query: 996 LSASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRF 1175
LS SMLKKVLKQ E+I+ SRSG PNF AH+ EA LQ V QYL VRGTTK S D +TR+
Sbjct: 240 LSISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRY 299
Query: 1176 GVSKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEE 1355
GV KE++ES+TKAWLEKMRTLFIRKGSGFSSRSVITGDAY VN++G+P EIAQ+ITFEE
Sbjct: 300 GVKKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEE 359
Query: 1356 KVTERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFIN 1535
+V+ N LQELVD+K CLTYKDG STYSLREGS GHT L+ GQV+ RRIMDGDIVFIN
Sbjct: 360 RVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFIN 419
Query: 1536 RPPSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELF 1715
RPP+THKHSLQA SVY+H+DH VKINPLICGPL ADFDGDCVHLFYPQSLAAKAEVLELF
Sbjct: 420 RPPTTHKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELF 479
Query: 1716 SVEQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSK 1895
SVE+QLLSSHSG MF+ F K+ AQQLAMF+SP L PALLK
Sbjct: 480 SVEKQLLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVN 539
Query: 1896 CAGSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKG 2075
C WTA QILQ ALPA FNC GER LI S +KVDFNRDV+ S+ +EI+ S+FF+KG
Sbjct: 540 CFFPHWTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKG 599
Query: 2076 SKDALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYN 2255
S L+ FNSLQP+LMEN+F EG+SV L+DFSI +++ + + + + ISPLL +LRST+N
Sbjct: 600 SGAVLKFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFN 659
Query: 2256 ELVELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKF 2435
ELVELQVENH+R VK V FIL SALG LIDSKS++++ KVV DRGK
Sbjct: 660 ELVELQVENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKL 719
Query: 2436 YSRTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSS 2615
YS+TLVED+ S F SK+ + DYPS +GLI++ FF GL+ YEE+ HSIS+REV+VRSS
Sbjct: 720 YSKTLVEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSS 779
Query: 2616 RGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVG 2795
RGL+EPGTLFKNLMAILRDVVICYDGTVRNV SNSIIQFEYG GT SQS +PAGEPVG
Sbjct: 780 RGLSEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVG 839
Query: 2796 VLAATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKK 2975
VLAATA+SNPAYKAVLDS+PSSN SW++MKEILLCKV FKNDL RRVILYLNDC CG+
Sbjct: 840 VLAATAMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRN 899
Query: 2976 YCKENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXX 3155
YC+E AA+LV+N L+KVSLKDIA F++EYK + PES ++A LVGH+H
Sbjct: 900 YCQERAAYLVKNHLEKVSLKDIAKCFMIEYKSQQIPESFGSDAGLVGHVHLDKRKLQDLN 959
Query: 3156 RSMHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQ 3335
+ +L +CQET+++FRKKK + G K+ L VSE C FQQ D PCL F WQ
Sbjct: 960 ITAQVILEKCQETVNTFRKKKKV-GNLFKKTILLVSESCSFQQCIDES----PCLMFFWQ 1014
Query: 3336 DTSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGEL 3515
LE S I+A+MICP+LL TI+KGD R+ ANIIW +P+T TW+RNP RTQKGEL
Sbjct: 1015 GADDVHLERTSNILADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGEL 1074
Query: 3516 ALEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVK 3695
AL+IVLEK+VVK++GDAWRIVLDSCLPV HLI+T RSIPYAIKQVQ+LLG+SCAFD V+
Sbjct: 1075 ALDIVLEKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQ 1134
Query: 3696 RLSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTP 3875
RLS SV MVAKGVLKEHL L+ NSMTC G+LIGF +GGYK L RSL++QVPFTEATLFTP
Sbjct: 1135 RLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTP 1194
Query: 3876 RKCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFL 4055
RKCFE+AAEKCH DSLSSIVASC WGKHV VGTG+ FD+LWD KE LN +G +DVY+FL
Sbjct: 1195 RKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFL 1254
Query: 4056 QLVRSS-DERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQ----- 4217
+VRS+ ES TAC SPE+N +P F+DSAE Q
Sbjct: 1255 NMVRSTAGGEESVTACLGAEVDDLMLEDEDWNL--SPEHNSSSDKPTFEDSAEFQDFLGN 1312
Query: 4218 ------YDQIKTLEKEKSSESNWEM--NSSLIKQSN-------------GSREWKVSQPL 4334
+++I +L+ S NW++ N +K+ S W +
Sbjct: 1313 QPAESNWEKISSLKDRSRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAAR 1372
Query: 4335 NIDNG-NAGMTMPKSSVWPGWGTDKVQTQ----VXXXXXXXXXXXXXXXGGWNTMESQKW 4499
+N N+ + +S+ + GW T K + W +
Sbjct: 1373 TTNNSWNSENNVAQSNSFSGWATKKPEPHNGFATKVQEEPTTSNDWDAGAAWGRKDRDNK 1432
Query: 4500 PSQLSDPADTWGTLAEADKIGQNKNDGKSQ---------WP---SQSDMPKKWPSQSSDP 4643
++ + WG + + D+ GQNK+ K W SQ W S+++
Sbjct: 1433 FAETNASKSWWGKVTDGDESGQNKSKNKRPEDQDVGTHGWDDKMSQDQSISGWASKTTQE 1492
Query: 4644 AAGTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKKEGKSQWPSQ 4823
A T +L K N D W + S+ + +T G + N+ + S W
Sbjct: 1493 A--TTESLGWDSKGNSNPGDAACGWKAASTWGAENTDGDKLWGKEVSSNQADTASGWGKP 1550
Query: 4824 SSDPSTDTWGTLAEADKT-----------GQNKNDGKSQWPSQSSDPSAGTWG---TLAE 4961
S + WG+ E+ K+ G++K Q + +G WG T +
Sbjct: 1551 KSPEISLGWGSTKESVKSDRGWGVSSSGGGRDKKTENQSLAGQGKE--SGGWGNKVTSNQ 1608
Query: 4962 ADKT---GQNKNDGKSQ-WGQWKNSAKPSEE--SPRYGGWN---INESQKQPQVEEPGET 5114
AD G+ K+ SQ WG K S K E P G N N + + + E G+
Sbjct: 1609 ADTASGWGKPKSSENSQGWGLSKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKE 1668
Query: 5115 WGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEESPSYGGWNIRKSE----KRPCDAW 5282
G ++ G G P+ E P E + GW + S W
Sbjct: 1669 SGWDNKASSNQEGTASGWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQW 1728
Query: 5283 GQRDGE------EGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFT 5444
GQ+ E EG+ GW SN GDWK K+ R P K D +ASGIFT
Sbjct: 1729 GQQSREFKKDRFEGSRGWG--------SNNGDWKNKRNR----PSK--PHEDLNASGIFT 1774
Query: 5445 ATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPD 5624
TRQRLD FTS+EQ+ILSD+EP++ SI+RIMHQ+ YNDGDPL+ADDQSYVLD+VF+YHPD
Sbjct: 1775 TTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPD 1834
Query: 5625 KTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFI 5804
K KMG+G+++V V++HS+FQ++RCFYIVSTDG ++DFSYRKC+ENFIK KYP +A+ FI
Sbjct: 1835 KAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFI 1894
Query: 5805 KKYF--RKPRSGNPAP 5846
KYF R R PAP
Sbjct: 1895 AKYFARRGNRQRTPAP 1910
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 1904 bits (4932), Expect = 0.0
Identities = 1023/1947 (52%), Positives = 1274/1947 (65%), Gaps = 99/1947 (5%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEE S ++D I +RF+LA QEIC QL NPFLGLP+E GKCES
Sbjct: 1 MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+EPGKC+GHFGYIELPIPI+HP H++E K++ G +
Sbjct: 61 CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCL----KMKKTKNIGFAER 116
Query: 645 IPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLL 824
+ S C D ++ + E + DGA +LQLKVPSR+ L + W+FLE+YGFRYGD+ RTLL
Sbjct: 117 LLSSCCEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLL 176
Query: 825 PIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSA 1004
P EV E+LK+IP ET KKLAG+GY PQDGYILQ +PVPPNCLSVP+ISDG ++MSSD +
Sbjct: 177 PCEVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAV 236
Query: 1005 SMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVS 1184
SMLKK+LKQ+EIIK SRSG PNF +HEVEANDLQLAV QYL VRGT KAS + RFGV+
Sbjct: 237 SMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVN 296
Query: 1185 KETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVT 1364
KE N+ STKAWLEKMRTLFIRKGSGFSSRSVITGDAYK VNEIG+P E+AQ+ITFEE+V+
Sbjct: 297 KELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVS 356
Query: 1365 ERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPP 1544
N LQELVD K CLTY+DG S YSLREGS GHT LK GQ++ RRIMDGDIVFINRPP
Sbjct: 357 VHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPP 416
Query: 1545 STHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVE 1724
+THKHSLQA VY+H+DH VKINPLICGPL ADFDGDC+HLFYPQS+AAKAEVL LFSVE
Sbjct: 417 TTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVE 476
Query: 1725 QQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAG 1904
+QLLSSHSG MF F KA AQQLAMFVS L PPALL +
Sbjct: 477 KQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGS 536
Query: 1905 SRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKD 2084
WTALQILQT LPA F+C G+ +LI S +K DF+RD + SL +EI++S+FF+KG ++
Sbjct: 537 LHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEE 596
Query: 2085 ALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNELV 2264
L+ F+SLQPLLME++F EG+SV L D+S+P + + LQ+N+Q +SPLL+ LRST+NELV
Sbjct: 597 VLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELV 656
Query: 2265 ELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSR 2444
ELQ+ENHLRSVKV NFILKLS+LG L DSKSES+INKVV D+G+FYS+
Sbjct: 657 ELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSK 716
Query: 2445 TLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGL 2624
+L+ED+ S FH++++ +DYPS FGL+K CFF GL+PYEE+VHSIS+REV+VRSSRGL
Sbjct: 717 SLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGL 776
Query: 2625 TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNG-TNSQSTYPAGEPVGVL 2801
TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQ EYG G S +P GEPVGVL
Sbjct: 777 TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVL 836
Query: 2802 AATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYC 2981
AATA+S PAYKAVLDS+PSSNSSW++MKEILLCKV+FKN+ RRVILYLN+CACG+KYC
Sbjct: 837 AATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYC 896
Query: 2982 KENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXXRS 3161
ENAA++V++ LKKV+LKD A++F++EY ++ +P S LVGH+H
Sbjct: 897 NENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTP--SGLGPGLVGHVHLNRMLLKELNID 954
Query: 3162 MHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
M EVL CQET+SSF+KKK + +L+ S+SE C F Q E +PCL F W T
Sbjct: 955 MTEVLRRCQETMSSFKKKKKKIAHALR---FSISEHCAFHQWNGEESIDMPCLIF-WHQT 1010
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
LE + I+A+++ P+L TI+KGDPR+ SA++IWISPD+T+W +NP R Q GELAL
Sbjct: 1011 RDVHLERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELAL 1070
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++ LEK+ VKQNGDAWR VLD CLPV HLIDTRRS+PYAIKQVQ+LLGISCAFDQ+++RL
Sbjct: 1071 DVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRL 1130
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
S SV MV+KGVL +HL L+ANSMTCTGN+IGFNSGGYKAL R+LN+QVPFTEATLFTPRK
Sbjct: 1131 SKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRK 1190
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFE+AAEKCH DSLSSIVASC WGKHVAVGTG+RFDILWD+KE+G +D +DVYNFL +
Sbjct: 1191 CFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHM 1250
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
VRS E +AC SPE +P+F+DSAE ++
Sbjct: 1251 VRSGKSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEH-----CL 1305
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPKSSVWPGWGTD-KVQTQ 4418
ES WE SL S G +W+ ++ N + G + W GWG +
Sbjct: 1306 DNYPGESKWEKAPSLGAVSTGGGQWESNENGKATNSSDG------NDWSGWGRKAEPDVT 1359
Query: 4419 VXXXXXXXXXXXXXXXGGW-----NTMESQKWPSQLS--------------------DPA 4523
V W N+ W + + D A
Sbjct: 1360 VTNAQENTSNSAWDTTSSWGNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSA 1419
Query: 4524 DTWGTLAEADKIGQNKNDGK-SQW--------PSQSDMPKKWPSQSS----DPAAGTWGT 4664
TWGT + D + K SQW +Q KK S + A + GT
Sbjct: 1420 STWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGT 1479
Query: 4665 LAEADKTGQNKNDGKSQWPSQSSDPSADT--WGTLAEADKTGQNKKEGKSQW----PSQS 4826
D D + Q + S+ T WG+ K + ++ W S
Sbjct: 1480 SKTEDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAGWNDGQASMD 1539
Query: 4827 SDPSTDTWGTLA----EADKTGQ----NKNDGKSQWPSQSSDPSAGTWGTLAEADKTGQ- 4979
+ +D W A E+ +T D K +PS++ D S + K+ +
Sbjct: 1540 REKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEA 1599
Query: 4980 NKNDGKSQWGQWKNS--AKPS--EESPRYGGW---------------NINESQKQPQV-- 5096
++ G WGQ K+ KPS GW + QK
Sbjct: 1600 SQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRG 1659
Query: 5097 ----EEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEESPSYG--------- 5237
E+ + W + + EA + G+ ND WGQ + + + S ES
Sbjct: 1660 WDSQEKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQDDSSTQFSQLKP 1719
Query: 5238 -----GWNIRKSEKRPCDAWG-QRDGEEGTG--GWNKSE--GKSQSSNAGDWKIKKGRAA 5387
GW +KS + WG ++ E T GW+K K NAG+WK +K R
Sbjct: 1720 PETSLGWEQQKSPE-VSHGWGSHKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPP 1778
Query: 5388 MSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDP 5567
SPG +D D + ++TA+ QRLD FTSEEQ+IL+D+EPI+QSI+++MHQS YNDGDP
Sbjct: 1779 KSPGMSND--DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1836
Query: 5568 LTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYR 5747
L+A+DQS+VL VFN+HPDK KMG+G+++ MV++HSSFQ++RCFY+V+TDGH+EDFSYR
Sbjct: 1837 LSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYR 1896
Query: 5748 KCMENFIKDKYPGMAESFIKKYFRKPR 5828
KC++NFIK KYP +AE F+ KYFRKPR
Sbjct: 1897 KCLDNFIKGKYPDLAEMFVAKYFRKPR 1923
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 1875 bits (4856), Expect = 0.0
Identities = 1002/2001 (50%), Positives = 1295/2001 (64%), Gaps = 156/2001 (7%)
Frame = +3
Query: 306 SHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCGTAEPG 485
S V+DG + +RF LAT QEICT QL NPFLGLPLE GKCESCGT+EPG
Sbjct: 7 SPVLDGELIGIRFGLATHQEICTASMMGCSISHASQLSNPFLGLPLEFGKCESCGTSEPG 66
Query: 486 KCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIPCSYCP 665
KC+GHFGYI+LP+PI+HP HVSE K++ N +G + + C
Sbjct: 67 KCEGHFGYIDLPVPIYHPNHVSELKKLLSLLCLKCL----KMKKNKSAGLAERLLSVCCE 122
Query: 666 DVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPIEVLEI 845
D ++ + E + +DG LQLK+PS + G WNFLE+YGFRYGD + R LLP EV++I
Sbjct: 123 DAAQVSITEFKPRDGVCSLQLKLPSNKKPPPGFWNFLERYGFRYGDGVKRILLPREVMQI 182
Query: 846 LKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASMLKKVL 1025
L+RIPEET KKLA +GY PQDGYIL +PVPPNCLSVP+ISDG +I+S+D S SMLKKVL
Sbjct: 183 LRRIPEETKKKLATRGYNPQDGYILNHIPVPPNCLSVPEISDGVTIISADPSISMLKKVL 242
Query: 1026 KQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKETNESS 1205
+++E I SRSG NF + E + LQ +V QYL VRGT KAS +++ RFG +KE +ESS
Sbjct: 243 RRVEEISSSRSGAANFESEIDEVDLLQESVDQYLQVRGTGKASRESDARFGGTKELSESS 302
Query: 1206 TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTERNRDNL 1385
TKAWLEKMRTLFIRKGSGFSSR+VITGDAY+RVNE+G+P +IAQ+ITFEEKV N L
Sbjct: 303 TKAWLEKMRTLFIRKGSGFSSRTVITGDAYRRVNEVGIPYDIAQRITFEEKVNAHNIRRL 362
Query: 1386 QELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPSTHKHSL 1565
QELVD K CLTY DG STYSLREGS GHT LK GQV+ RRIMDGD+VF+NRPP+THKHSL
Sbjct: 363 QELVDSKLCLTYSDGSSTYSLREGSKGHTFLKPGQVVHRRIMDGDLVFVNRPPTTHKHSL 422
Query: 1566 QAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQLLSSH 1745
QA VY+H D VKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV+ELFSVE+QLLSSH
Sbjct: 423 QALQVYVHEDKVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVMELFSVEKQLLSSH 482
Query: 1746 SGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSRWTALQ 1925
SG MF+ FF+KA QQLAMFVS SL PALLK+ WTALQ
Sbjct: 483 SGKPNLQLATDSLLSLKLMFKKYFFNKAAMQQLAMFVSSSLPQPALLKANSTVPCWTALQ 542
Query: 1926 ILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDALEVFNS 2105
ILQTALPA+F G+RHL+ SE++ +D + ++ SL ++I +S+FF+K ++D L FNS
Sbjct: 543 ILQTALPAQFQSSGDRHLVKDSEVLLLDCSTSLVPSLINDIGTSIFFEKSAEDVLSFFNS 602
Query: 2106 LQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNELVELQVENH 2285
+QPLLMEN+F EG+SV L+DF++P++ +D+Q+ +++ISPLL H+R+ YNELVE+Q+ENH
Sbjct: 603 MQPLLMENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRTVYNELVEMQLENH 662
Query: 2286 LRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRTLVEDMT 2465
+R VK V NFIL SALG+LIDSKS+S++NKVV YD+GK YS+TLVED++
Sbjct: 663 IRKVKEPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVS 722
Query: 2466 SFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLTEPGTLF 2645
S + +K+ VDYPS FGL+ F GL+P E ++HSI++REV+VRSSRGL+EPGTLF
Sbjct: 723 SLYQNKYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLF 782
Query: 2646 KNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAATAISNP 2825
KNLMA LRDVVICYDGTVRNVCSNSIIQFEYG +G+ ++ +PAGEPVGVLAATA+SNP
Sbjct: 783 KNLMATLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNP 842
Query: 2826 AYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKENAAFLV 3005
AYKAVLDS+PSSNSSW+LMKEILLCKV FKN+L RRV+LYLNDC CG+KYC+E+AA+LV
Sbjct: 843 AYKAVLDSTPSSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLV 902
Query: 3006 RNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXXRSMHEVLLEC 3185
+N+LKKVSLKD AV F++EY++ + S ++ LVGH+H M E+L +C
Sbjct: 903 KNRLKKVSLKDTAVEFMIEYQKERAAGSMEIDSGLVGHVHLNEMLLRELNLGMSEILQKC 962
Query: 3186 QETISSFRKKK----NLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDTSSDT 3353
+ETI+SFR+KK +G+ KR LS SECC F QS S PCL F +QD ++
Sbjct: 963 EETINSFRRKKVGKKMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSE 1022
Query: 3354 LENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELALEIVL 3533
LE ISQ++A+ ICP+LL T++KGDPR+ SANIIWI+ ++TTW+R+P ++ KGELAL++VL
Sbjct: 1023 LEAISQMLADFICPVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVL 1082
Query: 3534 EKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRLSTSV 3713
EK+VVKQ+GDAWRI LD CLPV HLIDTRRSIPYAIKQVQ+LLG+SCAFDQ V+RL+ +V
Sbjct: 1083 EKSVVKQSGDAWRIALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAV 1142
Query: 3714 KMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRKCFER 3893
MVAKGVLKEHL L+ANSMTC GN +GFN GGYKAL R+LN+QVPFTEATLFTP+KCFER
Sbjct: 1143 AMVAKGVLKEHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFER 1202
Query: 3894 AAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQLVRSS 4073
AAEKCHMDSLSSIVASC WGKHVAVGTG+RF+ILWD KE GLN+ GG+DV+NFL +V ++
Sbjct: 1203 AAEKCHMDSLSSIVASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGGVDVFNFLHMVNAA 1262
Query: 4074 DERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLEKEKS 4253
+ E TA SPE+N +P+F+D E D + +
Sbjct: 1263 NGEELTTAALGTEIDDLVPDYENGDVSLSPEHNSSSDKPVFEDIVEFP-DNFENVP---- 1317
Query: 4254 SESNWEMNSSLIKQSNGSREWK---------VSQPLNIDNGNA-GMTMPKSSVWPGWGTD 4403
+S+W+ S+ S G ++W +S D+ +A G+ P+ WGT
Sbjct: 1318 GKSSWD---SIYTASTGGKDWGAVKIGTQDGISAETQADSTSAWGIKTPREDDTSPWGTA 1374
Query: 4404 KVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQN---KN 4574
K T+ W +++ D WGT A + + +
Sbjct: 1375 KTATEDAPSAWGTKTVKEDAPSAWGIKTARE------DARSPWGTAKTATEDASSATARE 1428
Query: 4575 DGKSQWPS-----------------QSDMPKKWPSQS-SDPAAGTWGTLAEADKTGQNKN 4700
D S W + + D P W +++ + A WGT A +
Sbjct: 1429 DAPSPWGTAKTATGDALSAWGTKTLKEDAPSAWGTKTVREDAPSPWGTAKRATE------ 1482
Query: 4701 DGKSQWPSQSSDPSADT-WGTLAEADKTGQN-------KKEGKSQWPSQSS-DPSTDTWG 4853
D + W ++S+ A WGT A + + KK+ S W ++++ + +T WG
Sbjct: 1483 DAPAAWGAKSATEDAPPPWGTAKTAAEDAPSAWGVKAVKKDASSPWETKTATEDATTAWG 1542
Query: 4854 T--------LAEADKTGQNKNDGKSQWPSQSSDPSAGTWGTLAEADKTGQNKNDGKSQWG 5009
AE + + + D S W +++++ + TW T E++ + K +
Sbjct: 1543 RNNEKKHVLTAEVLEDSKAREDATSGWGTENAENAQSTWRTSTESENGWSGRGGSKVE-- 1600
Query: 5010 QWKNSAKPSEESPRYGGWN-INESQKQPQVEEPGETWGRHGTEE---------------- 5138
++ + E+P+ GWN + ++PQ E G WG G+E+
Sbjct: 1601 STDVQSQKAVENPK--GWNDFSAGVRKPQTENAGSGWGMKGSEKKGDIELEQDESTRHSW 1658
Query: 5139 ----ADVTGG-------NPNDGNPQW----------GQWRESHT-----------KPSEE 5222
AD + +P+ W G W + + KP+
Sbjct: 1659 KQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEKPAST 1718
Query: 5223 SPSYGGWNIRKSEKRPCDAWGQR---DGEEGTGGWNKSEGKSQSS--------------- 5348
+ S G W +KS + P WGQ+ D +GT G KS SQ S
Sbjct: 1719 N-SQGSWGQQKSPEIPQGNWGQQTSPDISQGTWGQQKSPEMSQGSWGQQKPSDTSQPATV 1777
Query: 5349 -------------------------------------NAGDWKIKKGRAAMSPGKFDDRN 5417
NAG+WK K R A SPG +D
Sbjct: 1778 NQWDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNAGEWKGKNSRPAKSPGMVND-- 1835
Query: 5418 DWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVL 5597
D S + I+TATRQRLD FTSEEQ++LS +EP + SI+RIMHQS YNDGD L+A+D S++L
Sbjct: 1836 DSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDHSFIL 1895
Query: 5598 DHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDK 5777
D VFN+HP+K KMGSG++Y V++H SFQ++RC +++STDG +EDFSYRKC++N IK+K
Sbjct: 1896 DKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQNMIKEK 1955
Query: 5778 YPGMAESFIKKYFRKPRSGNP 5840
YP +AE+F KYF +PR NP
Sbjct: 1956 YPELAEAFNDKYFSRPRPRNP 1976
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 1874 bits (4855), Expect = 0.0
Identities = 1019/1865 (54%), Positives = 1261/1865 (67%), Gaps = 15/1865 (0%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEEN S+ +DG I + F LAT +EI T QL N +LGLPLE GKC +
Sbjct: 1 MEENS-SASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNA 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+EPGKC+GHFGYIELPIPI+HP H+SE K + S S
Sbjct: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGS-ISDR 118
Query: 645 IPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDL-CRTL 821
+ S C + P++ ++E +T DGA L+LK PSR W FLEKYGFRYGD RTL
Sbjct: 119 LLASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTRTL 176
Query: 822 LPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLS 1001
LP EV+EILKRIP ET +KL+GKG+ PQ+GYIL+ +PVPPNCLSVPDISDG SIMSSDLS
Sbjct: 177 LPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSDLS 236
Query: 1002 ASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGV 1181
+MLKKVLKQ+EIIK SRSG PNF +HEVEANDLQ AV QYL VRGT KAS + + R+G+
Sbjct: 237 TAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGI 296
Query: 1182 SKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKV 1361
SK+ ++SSTKAWLEKMRTLFIRKGSGFSSR VITGD YK+VNEIG+P EIAQ+ITFEE+V
Sbjct: 297 SKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERV 356
Query: 1362 TERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRP 1541
N LQ LVD+K CLTY+DG STYSLREGS GHT L+ GQV+ RRIMDGDIVFINRP
Sbjct: 357 NMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRP 416
Query: 1542 PSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 1721
P+THKHSLQA SVY+H+DHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV ELFSV
Sbjct: 417 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSV 476
Query: 1722 EQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCA 1901
E+QLLSSH+G M + F KA AQQL+MF+S +L PA LK
Sbjct: 477 EKQLLSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSF 536
Query: 1902 GSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSK 2081
G WTALQILQTA PA +C G+R+LIS+S+I+ VDF+RD++QS+ +E+++S+FF+KG K
Sbjct: 537 GPCWTALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPK 596
Query: 2082 DALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNEL 2261
+ L F+SLQPLLMEN+F EG+SV L+DFS+ + + +++Q+++QDISPLL+ LRSTYNEL
Sbjct: 597 EVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNEL 656
Query: 2262 VELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYS 2441
V LQ+ENH+R K V NFIL SALG+LIDSKS+S++NKVV ++GKFYS
Sbjct: 657 VGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYS 716
Query: 2442 RTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRG 2621
+TLVED+ F S + GVDYPS FGLIKSCFF GL+PYE +VHSIS+REV+VRSSRG
Sbjct: 717 KTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRG 776
Query: 2622 LTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVL 2801
L+EPGTLFKNLMAILRDVVICYDGTVRN+ SNSIIQF+YG T Q +PAGEPVGVL
Sbjct: 777 LSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVL 834
Query: 2802 AATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYC 2981
AATA+SNPAYKAVLDS+PSSNSSWELMKEILLCKV+ KNDL RRVILYL DC CG+KYC
Sbjct: 835 AATAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYC 894
Query: 2982 KENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXXRS 3161
+ENAA+LV+N L+KV LKD AV + EYKQ+ + S + A LVGHI S
Sbjct: 895 QENAAYLVKNHLRKVKLKDTAVELIFEYKQQQT--VSESEAGLVGHILLNKAVLKELNIS 952
Query: 3162 MHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
M EV ++CQETI SFRKKK + KR L SECC QQSC +W + CL F ++T
Sbjct: 953 MQEVHMKCQETIISFRKKKK-TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNT 1011
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
D L+ Q + ++I P+LL T++KGDPR+ SANIIW+SPDTTTW+R+P +TQKGELAL
Sbjct: 1012 KDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELAL 1071
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++VLEK+ VKQNGDAWR V+D CLPV +LIDT+RSIPYAIKQVQ+LLGISCAF+Q V+RL
Sbjct: 1072 DVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRL 1131
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
STSV MVA+GVLKEHL L+ANSMTC GNLIGFNSGGYKAL RSLN+QVPF+EATLFTPRK
Sbjct: 1132 STSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRK 1191
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFERAAEKCH+DSLSSIVASC WGKHVAVGTG+RFD+LWD+KE+G ++ GIDVYNFL +
Sbjct: 1192 CFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHM 1251
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
+ S+ S T C SPE++ +P+F+D+A+ + D
Sbjct: 1252 LSSASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDL----- 1306
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLN--IDNGN----AGMTMPKSSVWPGWGTD 4403
+ +ES+WE SL K S+ W VS N ++G+ A + K S W WGT
Sbjct: 1307 DFQPAESSWEKGVSLDKVSS----WNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTS 1362
Query: 4404 KVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQNKNDGK 4583
K +TQ +T + +W WGT ++K
Sbjct: 1363 KSKTQ------------DAAAAATSTTKKTEWCD--------WGT-------SKSKTQEV 1395
Query: 4584 SQWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTL 4763
+ + + +W + + A T Q++ S++ D +A GT+
Sbjct: 1396 AATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGDWGTSKSKTQDVAAAVTGTM 1455
Query: 4764 AEADKTGQNKKEGKSQWPSQSSDPSTDTWGTLAEADKTGQNKNDGKSQWPSQSSDPSAG- 4940
E + K + K+Q S D + T + G KND + + + S G
Sbjct: 1456 -ETEWGDWGKGKSKTQDVSPKVDGTCVNEQT--KLSDWGLKKNDTQDVSMEEKTFKSNGA 1512
Query: 4941 ----TWGTLA-EADKTGQNKNDGKSQWG-QWKNSAKPSEESPRYGGWNINESQKQPQVEE 5102
+WGT+ E++K N S WG Q K ++S + GW E QK P+ +
Sbjct: 1513 DTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDDSSKSSGW---EQQKSPECSQ 1569
Query: 5103 PGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEES-PSYGGWNIRKSEKRPCDA 5279
WG ES+ S + G +SEK+
Sbjct: 1570 -------------------------GWGSLDESNQPASSNGWDTPNGLGSTQSEKQ--HQ 1602
Query: 5280 WGQRDGEEGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQR 5459
WGQ G+ W K + +K R +D S + ++TATRQR
Sbjct: 1603 WGQ---SRGSRRWASDASKK------NHPVKSARVM--------NDDSSMAAMYTATRQR 1645
Query: 5460 LDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKM 5639
LD FTSEEQ+ILSDVEP++QSI++IMHQS YNDGDPL+A DQS++L++VF +HPDK KM
Sbjct: 1646 LDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKM 1705
Query: 5640 GSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFR 5819
G+GV+YVMV+KHS+F D+RCFY+VSTDG ++DFSYRKC++NFIK KYP MA+ FI KYFR
Sbjct: 1706 GAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFR 1765
Query: 5820 KPRSG 5834
KPR G
Sbjct: 1766 KPRFG 1770
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 1864 bits (4829), Expect = 0.0
Identities = 1020/2003 (50%), Positives = 1272/2003 (63%), Gaps = 155/2003 (7%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEE S ++D I +RF+LA QEIC QL NPFLGLP+E GKCES
Sbjct: 1 MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60
Query: 465 CGTAEPGKCDG--------------------------HFGYIELPIPIFHPCHVSEXXXX 566
CGT+EPGKC+G HFGYIELPIPI+HP H++E
Sbjct: 61 CGTSEPGKCEGIDFFFXIFNVLHNTTXQVVFIFHLSGHFGYIELPIPIYHPNHITELKKM 120
Query: 567 XXXXXXXXXXXXGKIRHNGESGRSSNIPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRS 746
+ G + + S C D ++ + E + DGA +LQLKVPSR+
Sbjct: 121 LSLLCLKCLKMKKTKFPSKNIGFAERLLSSCCEDASQVTIREAKKADGASYLQLKVPSRT 180
Query: 747 RLLDGHWNFLEKYGFRYGDDLCRTLLPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQK 926
L + W+FLE+YGFRYGD+ RTLL + V E+LK+IP ET KKLAG+GY PQDGYILQ
Sbjct: 181 SLQERFWDFLERYGFRYGDNFTRTLLSVMVKEMLKKIPNETRKKLAGRGYYPQDGYILQY 240
Query: 927 VPVPPNCLSVPDISDGTSIMSSDLSASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQ 1106
+PVPPNCLSVP+ISDG ++MSSD + SMLKK+LKQ+EIIK SRSG PNF +HEVEANDLQ
Sbjct: 241 LPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQ 300
Query: 1107 LAVAQYLHVRGTTKASHDTNTRFGVSKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITG 1286
LAV QYL VRGT KAS + RFGV+KE N+ STKAWLEKMRTLFIRKGSGFSSRSVITG
Sbjct: 301 LAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITG 360
Query: 1287 DAYKRVNEIGLPLEIAQKITFEEKVTERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTG 1466
DAYK VNEIG+P E+AQ+ITFEE+V+ N LQELVD K CLTY+DG S YSLREGS G
Sbjct: 361 DAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMG 420
Query: 1467 HTSLKVGQVLQRRIMDGDIVFINRPPSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADF 1646
HT LK GQ++ RRIMDGDIVFINRPP+THKHSLQA VY+H+DH VKINPLICGPL ADF
Sbjct: 421 HTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADF 480
Query: 1647 DGDCVHLFYPQSLAAKAEVLELFSVEQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDK 1826
DGDC+HLFYPQS+AAKAEVL LFSVE+QLLSSHSG MF F K
Sbjct: 481 DGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGK 540
Query: 1827 ATAQQLAMFVSPSLGPPALLKSKCAGSRWTALQILQTALPARFNCIGERHLISQSEIVKV 2006
A AQQLAMFVS L PPALL + WTALQILQT LPA F+C G+ +LI S +K
Sbjct: 541 AAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKF 600
Query: 2007 DFNRDVLQSLFSEIISSVFFKKGSKDALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSI 2186
DF+RD + SL +EI++S+FF+KG ++ L+ F+SLQPLLME++F EG+SV L D+S+P +
Sbjct: 601 DFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAF 660
Query: 2187 TEDLQRNVQDISPLLHHLRSTYNELVELQVENHLRSVKVAVVNFILKLSALGNLIDSKSE 2366
+ LQ+N+Q +SPLL+ LRST+NELVELQ+ENHLRSVKV NFILKLS+LG L DSKSE
Sbjct: 661 LQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSE 720
Query: 2367 SSINKVVXXXXXXXXXXYDRGKFYSRTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFF 2546
S+INKVV D+G+FYS++L+ED+ S FH++++ +DYPS FGL+K CFF
Sbjct: 721 SAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFF 780
Query: 2547 QGLNPYEELVHSISSREVLVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSII 2726
GL+PYEE+VHSIS+REV+VRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSII
Sbjct: 781 HGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSII 840
Query: 2727 QFEYGEGNGT-NSQSTYPAGEPVGVLAATAISNPAYKAVLDSSPSSNSSWELMKEILLCK 2903
Q EYG G S +P GEPVGVLAATA+S PAYKAVLDS+PSSNSSW++MKEILLCK
Sbjct: 841 QLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCK 900
Query: 2904 VTFKNDLNVRRVILYLNDCACGKKYCKENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSP 3083
V+FKN+ RRVILYLN+CACG+KYC ENAA++V++ LKKV+LKD A++F++EY ++ +P
Sbjct: 901 VSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTP 960
Query: 3084 ESSTTNAALVGHIHXXXXXXXXXXRS--MHEVLLECQETISSFRKKKNLLGQSLKRIFLS 3257
S LVGH+H + M EVL CQET+SSF+KKK + +L+ S
Sbjct: 961 --SGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKKKKKKIAHALR---FS 1015
Query: 3258 VSECCCFQQSCDSEWSQIPCLQFSWQDTSSDTLENISQIMANMICPILLGTIVKGDPRVY 3437
+SE C F Q E +PCL F W T LE + I+A+++ P+L TI+KGDPR+
Sbjct: 1016 ISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAHILADIVFPLLSETIIKGDPRIK 1074
Query: 3438 SANIIWISPDTTTWVRNPCRTQKGELALEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDT 3617
SA++IWISPD+T+W +NP R Q GELAL++ LEK+ VKQNGDAWR VLD CLPV HLIDT
Sbjct: 1075 SASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDT 1134
Query: 3618 RRSIPYAIKQVQDLLGISCAFDQVVKRLSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGF 3797
RRS+PYAIKQVQ+LLGISCAFDQ+++RLS SV MV+KGVL +HL L+ANSMTCTGN+IGF
Sbjct: 1135 RRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGF 1194
Query: 3798 NSGGYKALFRSLNVQVPFTEATLF----------------------------TPRKCFER 3893
NSGGYKAL R+LN+QVPFTEATLF TPRKCFE+
Sbjct: 1195 NSGGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYMKFNFFFLFFLNGXYTTPRKCFEK 1254
Query: 3894 AAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQLVRSS 4073
AAEKCH DSLSSIVASC WGKHVAVGTG+RFDILWD+KE+G +D +DVYNFL +VRS
Sbjct: 1255 AAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSG 1314
Query: 4074 DERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLEKEKS 4253
E +AC SPE +P+F+DSAE ++
Sbjct: 1315 KSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEH-----CLDNYP 1369
Query: 4254 SESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPKSSVWPGWGTD-KVQTQVXXX 4430
ES WE SL S G +W+ ++ N + G + W GWG + V
Sbjct: 1370 GESKWEKAPSLGAVSTGGGQWESNENGKATNSSDG------NDWSGWGRKAEPDVTVTNA 1423
Query: 4431 XXXXXXXXXXXXGGW-----NTMESQKWPSQLS--------------------DPADTWG 4535
W N+ W + + D A TWG
Sbjct: 1424 QENTSNSAWDTTSSWGNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWG 1483
Query: 4536 TLAEADKIGQNKNDGK-SQW--------PSQSDMPKKWPSQSS----DPAAGTWGTLAEA 4676
T + D + K SQW +Q KK S + A + GT
Sbjct: 1484 TKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTE 1543
Query: 4677 DKTGQNKNDGKSQWPSQSSDPSADT--WGTLAEADKTGQNKKEGKSQW----PSQSSDPS 4838
D D + Q + S+ T WG+ K + ++ W S +
Sbjct: 1544 DNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAGWNDGQASMDREKV 1603
Query: 4839 TDTWGTLA----EADKTGQ----NKNDGKSQWPSQSSDPSAGTWGTLAEADKTGQ-NKND 4991
+D W A E+ +T D K +PS++ D S + K+ + ++
Sbjct: 1604 SDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGF 1663
Query: 4992 GKSQWGQWKNS--AKPS--EESPRYGGW---------------NINESQKQPQV------ 5096
G WGQ K+ KPS GW + QK
Sbjct: 1664 GNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQ 1723
Query: 5097 EEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEESPSYG------------- 5237
E+ + W + + EA + G+ ND WGQ + + + S ES
Sbjct: 1724 EKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETS 1783
Query: 5238 -GWNIRKSEKRPCDAWG-QRDGEEGTG--GWNKSE--GKSQSSNAGDWKIKKGRAAMSPG 5399
GW +KS + WG ++ E T GW+K K NAG+WK +K R SPG
Sbjct: 1784 LGWEQQKSPE-VSHGWGSNKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPKSPG 1842
Query: 5400 KFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTAD 5579
+D D + ++TA+ QRLD FTSEEQ+IL+D+EPI+QSI+++MHQS YNDGDPL+A+
Sbjct: 1843 MSND--DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAE 1900
Query: 5580 DQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCME 5759
DQS+VL VFN+HPDK KMG+G+++ MV++HSSFQ++RCFY+V+TDGH+EDFSYRKC++
Sbjct: 1901 DQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLD 1960
Query: 5760 NFIKDKYPGMAESFIKKYFRKPR 5828
NFIK KYP +AE F+ KYFRKPR
Sbjct: 1961 NFIKGKYPDLAEMFVAKYFRKPR 1983
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 1808 bits (4683), Expect = 0.0
Identities = 1021/2037 (50%), Positives = 1276/2037 (62%), Gaps = 187/2037 (9%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEE + S + +G I +RF LA+ +EICT QL NPFLGLPLE GKCES
Sbjct: 1 MEETNFSD-IYEGEIVGIRFGLASHREICTASVSGSSISHATQLSNPFLGLPLEFGKCES 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT++ G C+GHFGYIELP+PI+HP HVSE +G +
Sbjct: 60 CGTSDLGNCEGHFGYIELPVPIYHPSHVSELKRMLSLLCLKCLKMKKNKFPVKNAGIAEQ 119
Query: 645 IPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDD-----L 809
+ S C D ++ +EE + KD L+LKVPS +L +G WNFLE+YGFRYG L
Sbjct: 120 LLASCCQDASQVSIEEVK-KDTYSHLRLKVPSNKKLHEGFWNFLERYGFRYGGSPGEELL 178
Query: 810 CRTLLPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMS 989
RTLLP EV+EI K+IPEET KKL GKGY PQDGYILQ +PVPPNCLSVP+ISDG +IMS
Sbjct: 179 RRTLLPCEVMEIFKKIPEETRKKLVGKGYFPQDGYILQYLPVPPNCLSVPEISDGITIMS 238
Query: 990 SDLSASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNT 1169
+D S SMLKKVL+Q EIIK SRS PNF + EVEAN+LQ V QYL VRG+ KAS D +
Sbjct: 239 TDPSTSMLKKVLRQGEIIKSSRS-QPNFESLEVEANELQSIVNQYLQVRGSVKASRDIDA 297
Query: 1170 RFGVSKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITF 1349
RFGV+KE SS K WLEKMRTLFIRKGSGFSSRSVITGDAYK VNE+G+P EIA+ ITF
Sbjct: 298 RFGVNKEEKNSSRKVWLEKMRTLFIRKGSGFSSRSVITGDAYKAVNEVGIPYEIARWITF 357
Query: 1350 EEKVTERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVF 1529
EEKV+ N LQELVD+K CLTYKDG STYSLREGS GHT LK+GQV+ RRIMDGDIVF
Sbjct: 358 EEKVSSHNMKYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLKLGQVVHRRIMDGDIVF 417
Query: 1530 INRPPSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLE 1709
INRPP+THKHSLQA VY+H D+TVKINPLICGPL ADFDGDCVHLFYPQS AAKAEVLE
Sbjct: 418 INRPPTTHKHSLQALRVYVHEDNTVKINPLICGPLSADFDGDCVHLFYPQSPAAKAEVLE 477
Query: 1710 LFSVEQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLK 1889
LFS+E+Q+LSSHSG MF+ F DK AQQL MF S SL PA
Sbjct: 478 LFSLEKQILSSHSGGMILQLACDSLLSLKIMFKTYFMDKIAAQQLVMFASSSLPQPAFWL 537
Query: 1890 SKCAGSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFK 2069
+ WTALQ+LQTALP +C G+R LI S+I+ +DFNRDV S+ ++I +S+ +
Sbjct: 538 THSGDPFWTALQVLQTALPTSLDCYGDRFLIKGSDILVLDFNRDV--SVINDIGASICSE 595
Query: 2070 KGSKDALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRST 2249
KGS++ L+ FN+LQPLLMEN+F +G+SV L+DFSI + + +++ +++Q ISPLL+HLRST
Sbjct: 596 KGSEEVLKFFNALQPLLMENIFAQGFSVGLEDFSISQEVIKNITKDIQLISPLLYHLRST 655
Query: 2250 YNELVELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRG 2429
YNELVELQ+EN +R K V NFILK S++GNLID KS+S+INKVV DRG
Sbjct: 656 YNELVELQLENQIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRG 715
Query: 2430 KFYSRTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVR 2609
KFYS+TLVED++ + K+ VDYPS GLI+SCFF GL+PYEE+VHSIS+REV+VR
Sbjct: 716 KFYSKTLVEDVSCLYTRKYP-ENVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVR 774
Query: 2610 SSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEP 2789
SSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG G+ N YPAGEP
Sbjct: 775 SSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGRGSARN---LYPAGEP 831
Query: 2790 VGVLAATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACG 2969
VGVLAATA+SNPAYKAVLDSSPSSNSSWELMKEILLCK F+N+L RRVILYLN C CG
Sbjct: 832 VGVLAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCG 891
Query: 2970 KKYCKENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXX 3149
+KYC+E A +LV+NQLKKVSLKD AV F++EYK + S + NA LVGHIH
Sbjct: 892 RKYCREQATYLVQNQLKKVSLKDTAVEFMIEYKNQSSFSAVDMNAGLVGHIHLNEVLLKE 951
Query: 3150 XXRSMHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFS 3329
M+E+L +C+E I+S RKKK LG+ LK+ LSVSECC F +S S+ PCL S
Sbjct: 952 MDIGMNEILQKCEEAINSVRKKK--LGKHLKKAVLSVSECCTFHKSGLDGTSEFPCLLIS 1009
Query: 3330 WQDTSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKG 3509
++ +DTLE S+I+A+ ICP LL TI+KGD R+ SA I W+S DTT+ +R+P + G
Sbjct: 1010 IRENMNDTLEESSKILADSICPFLLETIIKGDSRISSAKITWLSSDTTS-IRSPQNSDMG 1068
Query: 3510 ELALEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQV 3689
ELA+++VL+K+ +K++GDAWRIV+DSCLPV HLIDTRRSIPY IKQ+Q+LLGISCAFDQ
Sbjct: 1069 ELAVDVVLDKSAIKRSGDAWRIVIDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQA 1128
Query: 3690 VKRLSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLF 3869
V+RLSTSV MV+KGVLKEHL L+ANSMT GNLIGFNSGGYKAL RSLNVQVPFTEATL
Sbjct: 1129 VQRLSTSVSMVSKGVLKEHLILLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLI 1188
Query: 3870 TPRKCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYN 4049
TP++CFERAAEKCH+DSL+SIVASC WGKHVAVGTG+RFDILWD +++ N+ GG+DV N
Sbjct: 1189 TPKRCFERAAEKCHVDSLTSIVASCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNN 1248
Query: 4050 FLQLVRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQ---- 4217
FL +V ++ E++TAC SPE NF+ RP+F+D E Q
Sbjct: 1249 FLHMVSTAYGEEASTACLGEEIDDLMPGDDIAELCLSPE-NFNSDRPVFEDIDEFQDISE 1307
Query: 4218 --------YDQIKTLEKEKSSESNWEMNSSLIKQSNGSREWKVS------------QPLN 4337
+D + + SS W N+++ + + W + +P N
Sbjct: 1308 KDLPGKSSWDNLSSFRSGSSSGKEWGSNNNVGTKYDVGSSWGTANKEEQEVIPSKGEPDN 1367
Query: 4338 I-----DNGNAGM---------------------------TMPKSSVW---PGWGTDKVQ 4412
+N N+G + +S VW PGWGT+
Sbjct: 1368 SWSNGWENKNSGRMELETMKSDWRGDADERHNPFSSKPQESSKRSDVWDATPGWGTNTAS 1427
Query: 4413 TQVXXXXXXXXXXXXXXXG------------GWNTMESQK---WPSQLSDPADTWGTLAE 4547
+V G GWN+ W SD + G +E
Sbjct: 1428 EKVSSSTGWNSENISSGAGWSKADSDNSHAKGWNSENISSGAGWSKAGSDNSHAKGWKSE 1487
Query: 4548 ADKIGQNKNDGKSQWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKT------GQNKNDGK 4709
G G S+ S + K W S++ AG W + + +N + G
Sbjct: 1488 NISSGA----GWSKADSDNSHAKGWNSENISSGAG-WSKAGSDNSSHAKGWNSENISSGA 1542
Query: 4710 SQWPSQSSDPSADTWGTL-----AEADKTGQNKKEGK----------SQWPSQSSDPSTD 4844
+ S + A W + A K G + K + W SD S+
Sbjct: 1543 GWSKADSDNSHAKGWNSENISSGAGWSKAGSDNSHAKGWNSENISSGAGWSKAGSDNSSH 1602
Query: 4845 TWGTLAE--ADKTGQNKNDGKSQ---------------WPSQSSDPS-----------AG 4940
G +E + G +K D + W SD S +G
Sbjct: 1603 AKGWNSENISSGAGWSKEDSDNSHAKGWNSENISSGAGWSKAGSDNSHAKGWNSENISSG 1662
Query: 4941 TWGTLAEADKTGQNKNDG-----------KSQWGQWKN---------SAKPSEESPRYGG 5060
+ A++D T D K+ W W S K ++ PR
Sbjct: 1663 ARWSKADSDNTHAKSTDWNTTSDRTKTMTKNTWSGWHGEKSEKEDILSTKSQQDLPRNSD 1722
Query: 5061 WN---------------INESQKQP-QVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQW 5192
W +++ Q P QV EP + W T + V+G ++
Sbjct: 1723 WGAVSNRENNAERAYEFVSKDQPLPDQVSEPCD-WDNKLTPQKAVSGWLSSNDEGWTKDA 1781
Query: 5193 RESHTKPSEESPS-YGGWNIRKS-------EKRPCDAWGQRDGEEG-----------TGG 5315
S K +SP Y W R S E ++W R G+ G +G
Sbjct: 1782 NSSERKEPTDSPVVYNSWEKRTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKKSGS 1841
Query: 5316 WNKSEGKSQS---SNAGDWKIKKGRAAMSPGKFDD-RNDWSASGIFTATRQRLDQFTSEE 5483
+ K+ G++ S++GDWKIKK PGKF ND ++ +FT TRQRLD FTSEE
Sbjct: 1842 FKKNHGETSGGWGSDSGDWKIKKNH----PGKFPRMNNDNTSVRLFTETRQRLDLFTSEE 1897
Query: 5484 QNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVM 5663
Q+ LS +EP ++SI+RIMH+S YNDGDP+ +DQS+++D+VFNYHPDK KMGSG++++M
Sbjct: 1898 QDALSLIEPTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLM 1957
Query: 5664 VNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 5834
+++HSSFQD+RC Y+VSTDG +EDFSYRKC+ N IK ++P +A+ F+ KYFRKP+ G
Sbjct: 1958 ISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPG 2014
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 1783 bits (4617), Expect = 0.0
Identities = 970/2009 (48%), Positives = 1259/2009 (62%), Gaps = 160/2009 (7%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
ME+N SS V+DG + ++F +AT QEICT QL NPFLGLPLE G+CES
Sbjct: 1 MEDNPPSS-VLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCES 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+E GKC+GHFGY+ELP+PI+HP H+SE SG +
Sbjct: 60 CGTSEVGKCEGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRKTKFPASSSGLAQR 119
Query: 645 IPCSYCPDVPK--IYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRT 818
+ C DV + + E +T DGA +L LKV S+S++ DG W+FLEKYG+RY D R
Sbjct: 120 LISPCCQDVNAALVSIREVKTSDGACYLALKV-SKSKIHDGFWSFLEKYGYRYEGDETRA 178
Query: 819 LLPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDL 998
LLP E +EI+KRIP ET KKLAGKG+ PQDGY+L+ +PVPPNCLSVP++SDG S+MSSD
Sbjct: 179 LLPCEAMEIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSSDP 238
Query: 999 SASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFG 1178
S ++L+K+L+++EIIK SRSG PNF +H VEANDLQ V QY +RGT+K + D T FG
Sbjct: 239 SMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFG 298
Query: 1179 VSKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEK 1358
V+KE SSTKAWLEKMRTLFIRKGSGFSSR+VITGD YKR+NE+G+P+E+AQ+ITFEE+
Sbjct: 299 VNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEER 358
Query: 1359 VTERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINR 1538
V N LQ+LVD CLTYK+GVSTYSLREGS GH LK GQ++ RRIMDGDIVFINR
Sbjct: 359 VNIHNIRYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINR 418
Query: 1539 PPSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFS 1718
PP+THKHSLQA VYIH DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELF+
Sbjct: 419 PPTTHKHSLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFA 478
Query: 1719 VEQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKC 1898
VE QLLSSHSG + + F +A A QLAMF+ L PALLK+
Sbjct: 479 VENQLLSSHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASS 538
Query: 1899 AGSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGS 2078
+ WT++QILQ ALP F+C G R+LI QSEI++ DF+RD L + +EI +S+FF KG
Sbjct: 539 DDACWTSIQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGP 598
Query: 2079 KDALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNE 2258
+AL+ F+ LQP LME++F EG+SV L++FSI ++I ++R++ S LL+ LRS YNE
Sbjct: 599 MEALKFFDVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNE 658
Query: 2259 LVELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFY 2438
LV Q+E H++ V++ ++NF LK + LG+LIDSKS+S+I+KVV +DRG+FY
Sbjct: 659 LVAQQLEKHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFY 718
Query: 2439 SRTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSR 2618
S+ LV+D+ S FH+K G YPS +GL+K CFF GL+PYEE+VHSIS+RE++VRSSR
Sbjct: 719 SKGLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSR 778
Query: 2619 GLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGV 2798
GL+EPGTLFKNLMAILRDVVICYDGTVRN+CSNSIIQFEYG G ++ +PAGEPVGV
Sbjct: 779 GLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGV 838
Query: 2799 LAATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKY 2978
LAATA+SNPAYKAVLD+SP+SNSSWELMKEILLCKV F+N+ RRVILYLNDC CG
Sbjct: 839 LAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSC 898
Query: 2979 CKENAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXX 3155
C+ENAA+ V+NQL+KVSLK+ AV F++EY +QR E+S T+A LVGHI+
Sbjct: 899 CRENAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELK 958
Query: 3156 RSMHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQ 3335
SM V +C E + SF +KK + Q LK I LS F +SC S PCL F W
Sbjct: 959 ISMANVFEKCLERLKSFSRKKK-VNQYLKNIELS------FSESCSSSHPAAPCLTF-WL 1010
Query: 3336 DTSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGEL 3515
L+N ++++ ICP+L TI+KGDPR+ SA+IIW+SPDT TWVRNP ++ GEL
Sbjct: 1011 KNHDSDLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGEL 1070
Query: 3516 ALEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVK 3695
AL+IVLE+ VKQ+GDAWRIVLDSCLPV HLIDTRRSIPYAIKQ+Q+LLGISC FDQ ++
Sbjct: 1071 ALDIVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQ 1130
Query: 3696 RLSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTP 3875
R++ SVKMVAKGVL+EHL L+A+SMTC GNL+GFN+GGYKAL R LN+QVPFT+ATLFTP
Sbjct: 1131 RVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTP 1190
Query: 3876 RKCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFL 4055
+KCFERAAEKCH DSLSSIVASC WGKHVAVGTG++FDI+WD E+ N+ G+DVY+FL
Sbjct: 1191 KKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFL 1250
Query: 4056 QLVRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYN------FDDGRPIFDDSAEVQ 4217
+V+S E T SP++N F++ + + S
Sbjct: 1251 HMVKSVTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNG 1310
Query: 4218 YDQIKTLEKEKSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGN----------AGMTM 4367
+D + K++E + +S+ +S ++E + +N ++ + A T
Sbjct: 1311 WDVSSNQTQSKTNEWSGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTADQTK 1370
Query: 4368 PKSSVWPGWGTDKVQTQVXXXXXXXXXXXXXXXGGWNT--------MESQKWPS------ 4505
KS+ W WG++K +++ WNT +S++W +
Sbjct: 1371 TKSNEWSDWGSNK--SEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKS 1428
Query: 4506 -----------QLSDPADTWGTLAEADKIGQNKNDGKSQWPSQSDMP----KKWPSQSSD 4640
+ S ++TW T AD+ N+ + ++S++P K SS
Sbjct: 1429 EIPACGSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSK 1488
Query: 4641 PAAGTWGTLAEADKTGQNK----NDGKSQWPS------QSSDPSADTWGTLAEADKT--- 4781
A T A+ KT N+ KS+ P+ Q ++ W T AD+T
Sbjct: 1489 SNAWNRSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTKTK 1548
Query: 4782 -------GQNKKEGKSQWPSQSSDPSTDTWGTLAEADKTGQNKND--------------- 4895
G NK E + + S+ W T AD+T N+
Sbjct: 1549 SNEWSAWGSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEWSARVSNKSEIPAGG 1608
Query: 4896 ---------GKSQWP---SQSSDPSAGTWGTLAEADKTGQNKNDG-------------KS 5000
G S+W +Q + G W A AD+T N+ G +
Sbjct: 1609 SKAVQEDSWGSSKWKADVAQEDNSRLGAWDANA-ADQTKSNEWSGWGKKKDVTQEDNVQH 1667
Query: 5001 QWGQWKNSAK-PSEESPRYGGWNINESQKQPQVEEPGETWGRHGTEEADVTGGNPNDGNP 5177
WG K K E++ G W N + +WG++ TE GG+ N N
Sbjct: 1668 SWGSGKRKDKVTQEDNSGSGDWGANRTDLAITKSSEWSSWGKNKTEIP--AGGSANVQND 1725
Query: 5178 QW---------------GQWRES----------------HTKPSEESPSYGGWNI----- 5249
W G W E+ KP E++ + G W
Sbjct: 1726 SWGLGKLNDTQKDNSGCGAWGENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESKVG 1785
Query: 5250 -------RKSEKRPCDAWGQRDGEEGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFD 5408
+ SE D+ Q + + GW + S N ++ KGR + +F+
Sbjct: 1786 NTTWGKPKSSESHAWDSHNQSNQNSSSQGWESHIASANSENEKGFQWGKGRDSFKKNRFE 1845
Query: 5409 -------DRNDW-SASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGD 5564
+ DW + + A QRLD ++SEEQ++L D+EPI+QSI+RIM Q Y+DGD
Sbjct: 1846 GSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGD 1905
Query: 5565 PLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSY 5744
PL A+DQ +VL++VF +HPDK TKMG+G++YVMVNKHSSFQ++RCFY+V DG +DFSY
Sbjct: 1906 PLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSY 1965
Query: 5745 RKCMENFIKDKYPGMAESFIKKYFRKPRS 5831
RKC+ N+I KYP +AESF+ KYFRKPR+
Sbjct: 1966 RKCLANYISKKYPDLAESFLGKYFRKPRA 1994
>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
gi|561006762|gb|ESW05756.1| hypothetical protein
PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 1771 bits (4588), Expect = 0.0
Identities = 975/2039 (47%), Positives = 1249/2039 (61%), Gaps = 190/2039 (9%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEEN SS V+DG + ++F +AT QEICT QL NPFLGLPLE G+CES
Sbjct: 1 MEENPPSS-VLDGMVVGVKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCES 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+E GKC+GHFGYIELP+PI+HP H+SE SG +
Sbjct: 60 CGTSEAGKCEGHFGYIELPVPIYHPSHISELKRLLSLVCLNCLKMRKTKLSASGSGLAQR 119
Query: 645 IPCSYCPDV--PKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRT 818
+ C ++ +I + E +T DGA +L LKV S+S++ W FLEKYG+RY D R
Sbjct: 120 LVSPCCEEINAAQISIREVKTSDGACYLALKV-SKSKMHPDFWGFLEKYGYRYEGDHTRA 178
Query: 819 LLPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDL 998
LLP E +EI+KRIP ET KKLAGKGY PQDGY+ + +PVPPNCLSVP++SDG S+MSSD
Sbjct: 179 LLPCEAMEIIKRIPIETKKKLAGKGYFPQDGYVFKHLPVPPNCLSVPEVSDGISVMSSDP 238
Query: 999 SASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFG 1178
S ++L+K+L+++EIIK SRSG PNF +H VEANDLQ V QY +RGT+KA+ DT TRFG
Sbjct: 239 SMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVEQYFQIRGTSKAARDTETRFG 298
Query: 1179 VSKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEK 1358
V+KE N SSTKAWLEKMRTLFIRKGSGFSSR+VITGD YKR+NE+G+P+E+AQ+ITFEE+
Sbjct: 299 VNKELNASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEER 358
Query: 1359 VTERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINR 1538
V N LQ+LVD CLTYK+GVST+SLREGS GH LK GQ++ RRIMDGDIVFINR
Sbjct: 359 VNIHNISYLQKLVDENLCLTYKEGVSTFSLREGSKGHIYLKPGQIVHRRIMDGDIVFINR 418
Query: 1539 PPSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFS 1718
PP+THKHSLQA VYIH+DHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELFS
Sbjct: 419 PPTTHKHSLQALFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 478
Query: 1719 VEQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKC 1898
VE QLLSSHSG + + FFD+A A QLAMF+ P LG P L+K+
Sbjct: 479 VENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFLLP-LGRPGLIKASS 537
Query: 1899 AGSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGS 2078
S WT++Q+LQ ALP F+C G R+LI QSEI++ DFNRDVL + +EI +S+FF KG
Sbjct: 538 GDSYWTSIQMLQCALPLCFDCSGGRYLIRQSEILEFDFNRDVLPATINEIAASIFFSKGP 597
Query: 2079 KDALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNE 2258
K+AL+ F+ LQP L E++F +G+SV L+DFSI ++ + R++ +S LLH LRS YNE
Sbjct: 598 KEALKFFDVLQPFLTESIFADGFSVSLQDFSISRATKRIISRSIGKVSSLLHQLRSIYNE 657
Query: 2259 LVELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFY 2438
LV Q+E +R ++ V+NF LK + LG+LIDSKS+S+I+KVV +DRG+FY
Sbjct: 658 LVAQQLEKLIRDIEHPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFY 717
Query: 2439 SRTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSR 2618
S+ LVED+ S FH K G YPS +GL+K FF GL+PYEE+VHSIS+REV+VRSSR
Sbjct: 718 SKGLVEDVASHFHVKCCYDGDGYPSAEYGLLKGSFFNGLDPYEEMVHSISTREVMVRSSR 777
Query: 2619 GLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGV 2798
GL+EPGTLFKNLMAILRDVVICYDGTVRN+CSNSIIQFEYG ++ +PAGEPVGV
Sbjct: 778 GLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGL---EKTEHLFPAGEPVGV 834
Query: 2799 LAATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKY 2978
LAATA+SNPAYKAVLD+SP+SNSSWELMKEILLCKV F+N+ RRVILYLNDC CG Y
Sbjct: 835 LAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGNY 894
Query: 2979 CKENAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXX 3155
C+ENAA+ V++QL+KV+LKD AV F++EY +QR+ +S T+A LVGHI+
Sbjct: 895 CRENAAYKVKDQLRKVNLKDAAVEFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEELK 954
Query: 3156 RSMHEVLLECQETISSF--RKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFS 3329
SM V +C E + SF RKK N Q LKR LS SE SC S PCL F
Sbjct: 955 ISMAHVFQKCLERLKSFSPRKKAN---QFLKRTELSYSE------SCSSSHPAAPCLTFV 1005
Query: 3330 WQDTSSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKG 3509
W + ++ + +I++ ICP+LL TI++GDPR+ SA+IIW++PDT TWVRNP ++ G
Sbjct: 1006 WVEDRNNEFDYTVKILSEKICPVLLETIIQGDPRISSASIIWVTPDTNTWVRNPYKSSTG 1065
Query: 3510 ELALEIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQV 3689
ELAL+I+LEK VVKQ+GDAWRIVLDSCLPV HLIDTRRSIPYAIKQ Q+LLGISC FDQ
Sbjct: 1066 ELALDIILEKEVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQTQELLGISCTFDQA 1125
Query: 3690 VKRLSTSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLF 3869
++R++ SVKMVAKGVL+EHL L+A+SMTC GN++GFN+GGYKAL R LN+QVPFT+ATLF
Sbjct: 1126 IQRVAASVKMVAKGVLREHLILLASSMTCGGNMVGFNTGGYKALSRQLNIQVPFTDATLF 1185
Query: 3870 TPRKCFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYN 4049
TP+KCFERAAEKCH DSLSSIVASC WGK VAVGTG++FDI+WD ++ ++ G+DVY+
Sbjct: 1186 TPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDIVWDANKIRSSEIEGMDVYS 1245
Query: 4050 FLQLVRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYN------FDDGRPIFDDSAE 4211
FL +V+ +RE T SP N F++ + ++S
Sbjct: 1246 FLHMVKGRTDREEETDACLGEDIDDLLEEENLDLEMSPPRNSGFEAVFEENPEVLNNSTS 1305
Query: 4212 VQYD-QIKTLEKEKSSESNWEMNSSLIKQSNGSREWKVSQPLNI-----------DNGNA 4355
+D E + + S W N + + R + S + +
Sbjct: 1306 NGWDVNSSQTESKTNGWSGWVSNKAETNEGRSDRAQESSWGKTVTQEDSSKSSAWNTNTT 1365
Query: 4356 GMTMPKSSVWPGWGTDKVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWG 4535
G T KS+ W WG+ K + Q G W + +++ + + + WG
Sbjct: 1366 GHTNTKSNEWSAWGSKKSEIQA--------GGSEKVEGSWGSGKTKDVTQKDNFGSGAWG 1417
Query: 4536 TLAEADKIGQNKNDGKSQWPSQS---------DMPKKWPS-------QSSDPAAGTWGTL 4667
A + K++ S W + + +M W S Q + +G WG
Sbjct: 1418 --ANKTDQAKTKSNEWSSWGNNNSEILAGGSENMQDSWGSGGRKDVTQEGNVTSGAWGAN 1475
Query: 4668 AEADKTGQNKNDG----KSQWPSQSSDPSADTWGT------LAEADKT----GQNK---- 4793
+ KT N+ G KS+ P+ S+ +WG+ + + D + G N+
Sbjct: 1476 VDQTKTQSNEWSGWGKNKSEIPAGGSENVQGSWGSDKWKDGVTQVDNSASGWGGNRRDQT 1535
Query: 4794 KEGKSQWPSQSSDPS-----------TDTWGTLAEADKTGQNKNDGKSQWPSQSSD---- 4928
K ++W + S+ + D+WG+ D + N G W D
Sbjct: 1536 KAKSNEWSGRGSNKAEIPAGASENVQEDSWGSGKLGDDVTEKDNSGSGAWGGNRRDQTKT 1595
Query: 4929 ---------------PSAG-------TWGTLAEADKTGQNKNDGKSQWG----------- 5009
P+ G +WG+ D QN N G WG
Sbjct: 1596 KSNEWSGWGRNKLEIPAGGSENVQEDSWGSGKLKDDVTQNDNSGSDAWGANSTGQTKSKS 1655
Query: 5010 -QWKNSAKPSEESPRYGGWNINES----------------------QKQPQVEEPGETWG 5120
+W K E P G N+ +S ++ Q W
Sbjct: 1656 NEWSGRGKNKSEIPAGGSENVQDSWGSGTRKDVTQVDTSVSGSWGGSRKDQTNTTSNEWA 1715
Query: 5121 RHGTEEADV-TGGNPNDGNPQWGQWRESHTKPSEESPSYGGWNIRKS--EKRPCDAWGQR 5291
G ++++ GG WG + +++ G W K+ K D W +
Sbjct: 1716 GWGRNKSEIPAGGCETVQEDSWGSGKLKDDVTQKDNSGSGAWGANKTGLTKTEVDEWARN 1775
Query: 5292 DGEEGTGG--------WN----KSE--------GKSQSSNAGDW---------------- 5363
E GG WN KSE GK SS + W
Sbjct: 1776 KVETADGGSEKLQEDSWNSGNLKSESKVGNASWGKPNSSGSQSWDSHNQSNQNSSSRGWE 1835
Query: 5364 ----------------------KIKKGRAAMSPGKFDDRNDWSASGIFTAT-RQRLDQFT 5474
KK R S G+ + DW T QRLD ++
Sbjct: 1836 SHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGSNSGDWKNRNRPPRTPGQRLDLYS 1895
Query: 5475 SEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVN 5654
SEEQ++L ++EPI+QSI+RIM Q YNDGDPL ADDQ +VL++VF +HPDK TKMG+G++
Sbjct: 1896 SEEQDVLKEIEPIMQSIRRIMQQQGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGID 1955
Query: 5655 YVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRS 5831
YVMVNKHSSFQD+RCFY+V DG REDFSYRKC++N+I+ KYP +AESF KYFRKPR+
Sbjct: 1956 YVMVNKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRN 2014
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 1727 bits (4474), Expect = 0.0
Identities = 943/1979 (47%), Positives = 1236/1979 (62%), Gaps = 131/1979 (6%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
ME+N +S ++DG++ +RF++AT EI T QL NPFLGLPLE G+CES
Sbjct: 53 MEDNATTS-LLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCES 111
Query: 465 CGTAEPGKCDG------------------------------HFGYIELPIPIFHPCHVSE 554
CGT+E GKC+G HFGYIELP+PI+HP HV+E
Sbjct: 112 CGTSEAGKCEGLLFDHFLYCHSDGKMLYFKRIGLNNYYFSGHFGYIELPVPIYHPSHVTE 171
Query: 555 XXXXXXXXXXXXXXXXGKIRHNGESGRSSNIPCSYCPDV--PKIYVEEKRTKDGAIFLQL 728
+ SG + + C DV ++ + E +T DGA +L L
Sbjct: 172 LKKILSLVCLSCLRLKKTKVPSSSSGLAQRLLSPCCEDVNAAQVSIREVKTADGACYLAL 231
Query: 729 KVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPIEVLEILKRIPEETGKKLAGKGYLPQD 908
KV S+S++ DG W FLEKYG+RYG D R LLP E +EI+KR+P+ET KKLAGKGY PQD
Sbjct: 232 KV-SKSKMHDGFWTFLEKYGYRYGGDHTRALLPCEAMEIIKRLPQETKKKLAGKGYFPQD 290
Query: 909 GYILQKVPVPPNCLSVPDISDGTSIMSSDLSASMLKKVLKQIEIIKKSRSGPPNFMAHEV 1088
GYIL+ +PVPPNCLSVP +SDG SIMSSD + ++L+K+L+++E+I+ SRSG PNF +H+V
Sbjct: 291 GYILKYLPVPPNCLSVPVVSDGVSIMSSDPALTILRKLLRKVEVIRSSRSGEPNFESHQV 350
Query: 1089 EANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKETNESSTKAWLEKMRTLFIRKGSGFSS 1268
EANDLQ V QYL +RGT+KA+ D T +GV+KE N+SSTKAWLEKMRTLFIRKGSGFSS
Sbjct: 351 EANDLQSVVDQYLQIRGTSKAARDIETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSS 410
Query: 1269 RSVITGDAYKRVNEIGLPLEIAQKITFEEKVTERNRDNLQELVDHKFCLTYKDGVSTYSL 1448
R+VITGD YK++NE+G+PLE+AQ+ITFEE+V+ N LQ+LVD CLTYK+G+STYSL
Sbjct: 411 RNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIHYLQKLVDENLCLTYKEGMSTYSL 470
Query: 1449 REGSTGHTSLKVGQVLQRRIMDGDIVFINRPPSTHKHSLQAFSVYIHNDHTVKINPLICG 1628
REGS GHT LK GQ++ RRIMDGD VFINRPP+THKHSLQA VYIH+DHTVKINPLICG
Sbjct: 471 REGSKGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICG 530
Query: 1629 PLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQLLSSHSGXXXXXXXXXXXXXXXRMFE 1808
PLGADFDGDCVHLFYPQSLAAKAEVLELFSVE+QLLSSHSG + +
Sbjct: 531 PLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADSLLSLKMLVK 590
Query: 1809 VAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSRWTALQILQTALPARFNCIGERHLISQ 1988
F D+ A Q+AMF+ L PALLK+ S WT++QILQ ALP F+C G R+LI Q
Sbjct: 591 SCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQILQCALPFSFDCTGGRYLIRQ 650
Query: 1989 SEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDALEVFNSLQPLLMENMFLEGYSVCLKDF 2168
EI++ DF RD+L S+ +EI +S+FF KG ++AL F+ +QP LMEN+F G+SV L+DF
Sbjct: 651 REILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVIQPFLMENIFAHGFSVGLQDF 710
Query: 2169 SIPKSITEDLQRNVQDISPLLHHLRSTYNELVELQVENHLRSVKVAVVNFILKLSALGNL 2348
SI +++ + R++ +SPLL LR Y ELV Q+E ++ +++ V+NF LK + LG+L
Sbjct: 711 SISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIELPVINFALKSTKLGDL 770
Query: 2349 IDSKSESSINKVVXXXXXXXXXXYDRGKFYSRTLVEDMTSFFHSKFAVSGVDYPSEAFGL 2528
IDSKS+S+++KV+ ++RGKFYS+ LVED+ S F K DYPS FGL
Sbjct: 771 IDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQLKCFYDKDDYPSAEFGL 830
Query: 2529 IKSCFFQGLNPYEELVHSISSREVLVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNV 2708
+K CFF GL+PYEELVHSI++RE++ RSSRGL+EPGTLFKNLMAILRDVVICYDGTVRNV
Sbjct: 831 LKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNV 890
Query: 2709 CSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAATAISNPAYKAVLDSSPSSNSSWELMKE 2888
CSNSIIQFEYG +G +Q +PAGEPVGVLAAT++SNPAYKAVLD+SPSSNSSW MKE
Sbjct: 891 CSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWGFMKE 950
Query: 2889 ILLCKVTFKNDLNVRRVILYLNDCACGKKYCKENAAFLVRNQLKKVSLKDIAVNFLVEYK 3068
ILLCKV F+N+ N RRVILYLNDC CG+ YC+ENAA+LV+NQL+KVSLKD A++F+VEY+
Sbjct: 951 ILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSLKDAALDFIVEYQ 1010
Query: 3069 QRVSPESSTTNAALVGHIHXXXXXXXXXXRSMHEVLLECQETISSFRKKKNLLGQSLKRI 3248
Q+ T +A LV HI +M EV +CQE ++SF +KK L KR
Sbjct: 1011 QQRRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSRKKK-LSPFFKRT 1069
Query: 3249 FLSVSECCCFQQSCDSEWSQIPCLQFSWQDTSSDTLENISQIMANMICPILLGTIVKGDP 3428
L SE C PC+ F W D L+ ++++A+MICP+LL TI++GDP
Sbjct: 1070 ELIFSEFC-----------SAPCVTFLWPD--GVDLDQTTKVLADMICPVLLETIIQGDP 1116
Query: 3429 RVYSANIIWISPDTTTWVRNPCRTQKGELALEIVLEKAVVKQNGDAWRIVLDSCLPVFHL 3608
R+ SA+IIW++P T TWVRNP ++ GELAL+++LEK VKQ+GDAWRIVLDSCLPV HL
Sbjct: 1117 RISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLPVLHL 1176
Query: 3609 IDTRRSIPYAIKQVQDLLGISCAFDQVVKRLSTSVKMVAKGVLKEHLTLVANSMTCTGNL 3788
IDTRRSIPYAIKQ+Q+LLGI+C FDQ ++RL+ SV+MVAKGVL+EHL L+A+SMTC GNL
Sbjct: 1177 IDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNL 1236
Query: 3789 IGFNSGGYKALFRSLNVQVPFTEATLF--------------------------TPRKCFE 3890
+GFN+GGYK L R L++QVPFT+ATLF TPRKCFE
Sbjct: 1237 VGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKLQDVFCYYFSYFVNVIMQTPRKCFE 1296
Query: 3891 RAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQLVRS 4070
RAAEK H DSLSSIVASC WGKHVAVGTG++FDI+WD KE+ N+ G++VY FL +V+
Sbjct: 1297 RAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLNMVKG 1356
Query: 4071 SDERESNTACXXXXXXXXXXXXXXXXXXXSPEY--NFDDGRPIFDDSAEVQYDQIKTLEK 4244
E T SP++ FD +FD++ E+
Sbjct: 1357 LANGEEETNACLGEDIDDLFDDENGDFDMSPQHASGFD---AVFDETFEL---------P 1404
Query: 4245 EKSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPKSSVWPGWGTDKVQTQVX 4424
S+ + W+ N I Q N S+ W GWG +K QV
Sbjct: 1405 NGSTSNGWDSNKDQIDQPN----------------------TNSNDWSGWGPNKSDLQV- 1441
Query: 4425 XXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQNKNDGKSQWPSQS 4604
W +QK A WG + Q + W + +
Sbjct: 1442 ----DVIQEDSSKSSAWGAATNQK----SDQSASAWG-----KAVVQEDSSKSGAWGTAT 1488
Query: 4605 DMPKKWPS------QSSDPAAGTWGTLA---EADKTGQ--------NKNDGKSQWPSQSS 4733
+ + PS Q SD +A WG ++ K+G ++ KS P+ ++
Sbjct: 1489 NQNSEQPSWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGNAKSVVQEDSSKSGAPANTN 1548
Query: 4734 DPSADT-WGTLAEADKTGQNKKEGKSQWPSQ-SSDPSTDT-----WGT----LAEADKTG 4880
S + WG + ++ Q + G +W + S + ST++ WG+ + E + T
Sbjct: 1549 HSSDQSCWGQITGGEERAQGESGGTKKWKADVSQEDSTNSGGWKAWGSSKPEVHEGESTK 1608
Query: 4881 QNKNDGKSQWP-----SQSSDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAK-PSEE 5042
+ +W SQ + WG T ND +S WGQ K+ E+
Sbjct: 1609 VQDSWNSQKWKAGEDVSQKDSQKSSAWGA------TKPKSNDNRSSWGQKKDEIHVMPED 1662
Query: 5043 SPRYGGW-----NINES--------------QKQPQ------VEEPGETWGRHGTEEADV 5147
S R W N+ +S K P+ EP ++G+ ++E +
Sbjct: 1663 SSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPNNSFGKPNSQENE- 1721
Query: 5148 TGGNPNDGNPQWGQWRESHTKP-SEESPSYGGWNIRKS-EKRPCDAWGQRDGEEGTGGWN 5321
+ N+ + WG+ + ++P ++ S W KS E P D+ + + G+ GW+
Sbjct: 1722 PWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQTAGSRGWD 1781
Query: 5322 K--SEGKSQSSNAGDWKIKKGRAAMSPGKFD-------DRNDW-SASGIFTATRQRLDQF 5471
+ S+S + W K+GR + +F+ + DW + S QR + +
Sbjct: 1782 SQVASANSESDKSFQWG-KQGRDSFKKNRFEGSQSGGPNAGDWKNRSRPVRPPGQRFELY 1840
Query: 5472 TSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGV 5651
T EEQ+I+ D+EPI+QSI+RIM YNDGDPL +DQ YVL++VF +HPDK TKMG GV
Sbjct: 1841 TPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGV 1900
Query: 5652 NYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR 5828
++VMV+KHS+FQD+RC Y+V DG +EDFSYRKC+EN ++ KYP AESF KYFRKP+
Sbjct: 1901 DHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQ 1959
>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
[Theobroma cacao] gi|508727914|gb|EOY19811.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
3 [Theobroma cacao]
Length = 1675
Score = 1724 bits (4465), Expect = 0.0
Identities = 952/1769 (53%), Positives = 1177/1769 (66%), Gaps = 15/1769 (0%)
Frame = +3
Query: 285 MEENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCES 464
MEEN S+ +DG I + F LAT +EI T QL N +LGLPLE GKC +
Sbjct: 1 MEENS-SASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNA 59
Query: 465 CGTAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSN 644
CGT+EPGKC+GHFGYIELPIPI+HP H+SE K + S S
Sbjct: 60 CGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGS-ISDR 118
Query: 645 IPCSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDL-CRTL 821
+ S C + P++ ++E +T DGA L+LK PSR W FLEKYGFRYGD RTL
Sbjct: 119 LLASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTRTL 176
Query: 822 LPIEVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLS 1001
LP EV+EILKRIP ET +KL+GKG+ PQ+GYIL+ +PVPPNCLSVPDISDG SIMSSDLS
Sbjct: 177 LPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSDLS 236
Query: 1002 ASMLKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGV 1181
+MLKKVLKQ+EIIK SRSG PNF +HEVEANDLQ AV QYL VRGT KAS + + R+G+
Sbjct: 237 TAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGI 296
Query: 1182 SKETNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKV 1361
SK+ ++SSTKAWLEKMRTLFIRKGSGFSSR VITGD YK+VNEIG+P EIAQ+ITFEE+V
Sbjct: 297 SKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERV 356
Query: 1362 TERNRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRP 1541
N LQ LVD+K CLTY+DG STYSLREGS GHT L+ GQV+ RRIMDGDIVFINRP
Sbjct: 357 NMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRP 416
Query: 1542 PSTHKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 1721
P+THKHSLQA SVY+H+DHTVKINPLICGPL ADFDGDC+HLFYPQSLAAKAEV ELFSV
Sbjct: 417 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSV 476
Query: 1722 EQQLLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCA 1901
E+QLLSSH+G M + F KA AQQL+MF+S +L PA LK
Sbjct: 477 EKQLLSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSF 536
Query: 1902 GSRWTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSK 2081
G WTALQILQTA PA +C G+R+LIS+S+I+ VDF+RD++QS+ +E+++S+FF+KG K
Sbjct: 537 GPCWTALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPK 596
Query: 2082 DALEVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNVQDISPLLHHLRSTYNEL 2261
+ L F+SLQPLLMEN+F EG+SV L+DFS+ + + +++Q+++QDISPLL+ LRSTYNEL
Sbjct: 597 EVLNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNEL 656
Query: 2262 VELQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYS 2441
V LQ+ENH+R K V NFIL SALG+LIDSKS+S++NKVV ++GKFYS
Sbjct: 657 VGLQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYS 716
Query: 2442 RTLVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRG 2621
+TLVED+ F S + GVDYPS FGLIKSCFF GL+PYE +VHSIS+REV+VRSSRG
Sbjct: 717 KTLVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRG 776
Query: 2622 LTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVL 2801
L+EPGTLFKNLMAILRDVVICYDGTVRN+ SNSIIQF+YG T Q +PAGEPVGVL
Sbjct: 777 LSEPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVL 834
Query: 2802 AATAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYC 2981
AATA+SNPAYKAVLDS+PSSNSSWELMKEILLCKV+ KNDL RRVILYL DC CG+KYC
Sbjct: 835 AATAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYC 894
Query: 2982 KENAAFLVRNQLKKVSLKDIAVNFLVEYKQRVSPESSTTNAALVGHIHXXXXXXXXXXRS 3161
+ENAA+LV+N L+KV LKD AV + EYKQ+ + S + A LVGHI S
Sbjct: 895 QENAAYLVKNHLRKVKLKDTAVELIFEYKQQQT--VSESEAGLVGHILLNKAVLKELNIS 952
Query: 3162 MHEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
M EV ++CQETI SFRKKK + KR L SECC QQSC +W + CL F ++T
Sbjct: 953 MQEVHMKCQETIISFRKKKK-TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNT 1011
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
D L+ Q + ++I P+LL T++KGDPR+ SANIIW+SPDTTTW+R+P +TQKGELAL
Sbjct: 1012 KDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELAL 1071
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++VLEK+ VKQNGDAWR V+D CLPV +LIDT+RSIPYAIKQVQ+LLGISCAF+Q V+RL
Sbjct: 1072 DVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRL 1131
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
STSV MVA+GVLKEHL L+ANSMTC GNLIGFNSGGYKAL RSLN+QVPF+EATLFTPRK
Sbjct: 1132 STSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRK 1191
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFERAAEKCH+DSLSSIVASC WGKHVAVGTG+RFD+LWD+KE+G ++ GIDVYNFL +
Sbjct: 1192 CFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHM 1251
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
+ S+ S T C SPE++ +P+F+D+A+ + D
Sbjct: 1252 LSSASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDL----- 1306
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLN--IDNGN----AGMTMPKSSVWPGWGTD 4403
+ +ES+WE SL K S+ W VS N ++G+ A + K S W WGT
Sbjct: 1307 DFQPAESSWEKGVSLDKVSS----WNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTS 1362
Query: 4404 KVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQNKNDGK 4583
K +TQ +T + +W WGT ++K
Sbjct: 1363 KSKTQ------------DAAAAATSTTKKTEWCD--------WGT-------SKSKTQEV 1395
Query: 4584 SQWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTL 4763
+ + + +W + + A T Q++ S++ D +A GT+
Sbjct: 1396 AATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGDWGTSKSKTQDVAAAVTGTM 1455
Query: 4764 AEADKTGQNKKEGKSQWPSQSSDPSTDTWGTLAEADKTGQNKNDGKSQWPSQSSDPSAG- 4940
E + K + K+Q S D + T + G KND + + + S G
Sbjct: 1456 -ETEWGDWGKGKSKTQDVSPKVDGTCVNEQT--KLSDWGLKKNDTQDVSMEEKTFKSNGA 1512
Query: 4941 ----TWGTLA-EADKTGQNKNDGKSQWG-QWKNSAKPSEESPRYGGWNINESQKQPQVEE 5102
+WGT+ E++K N S WG Q K ++S + GW E QK P+ +
Sbjct: 1513 DTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDDSSKSSGW---EQQKSPECSQ 1569
Query: 5103 PGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEES-PSYGGWNIRKSEKRPCDA 5279
WG ES+ S + G +SEK+
Sbjct: 1570 -------------------------GWGSLDESNQPASSNGWDTPNGLGSTQSEKQ--HQ 1602
Query: 5280 WGQRDGEEGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQR 5459
WGQ G+ W K + +K R +D S + ++TATRQR
Sbjct: 1603 WGQ---SRGSRRWASDASKK------NHPVKSARVM--------NDDSSMAAMYTATRQR 1645
Query: 5460 LDQFTSEEQNILSDVEPILQSIKRIMHQS 5546
LD FTSEEQ+ILSDVEP++QSI++IMHQS
Sbjct: 1646 LDMFTSEEQDILSDVEPLMQSIRKIMHQS 1674
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 1678 bits (4345), Expect = 0.0
Identities = 912/1928 (47%), Positives = 1195/1928 (61%), Gaps = 79/1928 (4%)
Frame = +3
Query: 291 ENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCG 470
E SS +++G I ++F LAT EIC QL N FLGLPLE GKCESCG
Sbjct: 2 EEESSSEILEGEIVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCG 61
Query: 471 TAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIP 650
EP KC+GHFGYI+LP+PI+HP HV+E K + G + +
Sbjct: 62 ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI--KKAKSTSGGLADRLL 119
Query: 651 CSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPI 830
C + +I + + R DGA +L+LK+PSRSRL G WNFLE+YG+RYG D R LL
Sbjct: 120 GVCCEEASQISIRD-RASDGASYLELKLPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAR 178
Query: 831 EVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASM 1010
EV EIL+RIPEET KKL KG++PQ+GYIL+ +PVPPNCLSVPD+SDG S MS D S
Sbjct: 179 EVKEILRRIPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGYSSMSVDPSRIE 238
Query: 1011 LKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKE 1190
LK VLK++ IK SRSG NF +H+ EAND+ V YL VRGT KA+ + + R+GVSK
Sbjct: 239 LKDVLKKVIAIKSSRSGETNFESHKAEANDMFRVVDTYLQVRGTAKAARNIDMRYGVSKI 298
Query: 1191 TNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTER 1370
++ SS+KAW +KMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P+EIAQ+ITFEE+V+
Sbjct: 299 SDSSSSKAWTQKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH 358
Query: 1371 NRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPST 1550
N LQ+LVD K CL+Y G +TYSLR+GS GHT LK GQV+ RR++DGD+VFINRPP+T
Sbjct: 359 NIGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTVLKPGQVVHRRVIDGDVVFINRPPTT 418
Query: 1551 HKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQ 1730
HKHSLQA VY+H D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV+ELFSVE+Q
Sbjct: 419 HKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQ 478
Query: 1731 LLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSR 1910
LLSSH+G M E F DKATAQQLAM+ S +L PPAL KS +G
Sbjct: 479 LLSSHTGQLILQMGCDSLLSLRVMLEGVFLDKATAQQLAMYGSLTLPPPALRKSSKSGPA 538
Query: 1911 WTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDAL 2090
WT QILQ A P R +C G+R ++ S+++K DF D + S+ +EI++S+F +KG K+ L
Sbjct: 539 WTVFQILQLAFPERLSCKGDRFMVDGSDLLKFDFGVDAMASIINEIVTSIFLEKGPKETL 598
Query: 2091 EVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNV-QDISPLLHHLRSTYNELVE 2267
F+SLQPLLME++F EG+SV L+D S+ ++ + + + ++ISP++ LR +Y + E
Sbjct: 599 GFFDSLQPLLMESLFAEGFSVSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRD--E 656
Query: 2268 LQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRT 2447
LQ+EN L VK NF+LK ++ NLID KS S+I K+V D+ KFY++T
Sbjct: 657 LQLENSLHKVKEVAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKT 716
Query: 2448 LVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLT 2627
LVEDM F K+ G S FG++K CFF GL+PYEE+ HSI++REV+VRSSRGL
Sbjct: 717 LVEDMALFCKRKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 2628 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAA 2807
EPGTLFKNLMA+LRD+VI DGTVRN CSNS++QF YG + Q + AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAA 833
Query: 2808 TAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKE 2987
TA+SNPAYKAVLDS+ +SNSSWE MKE+LLCKV F+N N RRVILYLN+C CGK++C+E
Sbjct: 834 TAMSNPAYKAVLDSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893
Query: 2988 NAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
NAA+ VRN+LKKVSLKD AV FLVEY KQ+ E ++ L GHIH SM
Sbjct: 894 NAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISM 953
Query: 3165 HEVLLECQETISSF-RKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
++L +C++ I+S +KKK KR LSVSECC FQ C + S +PCL FS+ T
Sbjct: 954 QDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSYSAT 1013
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
D LE ++ N I P+LL T++KGDPR+ SANIIW S D TTW+RN +++GE L
Sbjct: 1014 DPD-LERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNCHASRRGEWVL 1072
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++ +EK+ VKQ+GDAWR+V+D+CL V HLIDT+RSIPY+IKQVQ+LLG+SCAF+Q V+RL
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRL 1132
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
S SV+MV+KGVLKEH+ L+AN+MTC+GN++GFNSGGYKAL RSLN++ PFTEATL TPR+
Sbjct: 1133 SASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRR 1192
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFE+AAEKCH DSLS++V SC WGK V VGTG++F++LW++KE GL+ DVY+FLQ+
Sbjct: 1193 CFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQM 1252
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
VRS+ +N SPE + G P F+DSAE Q +
Sbjct: 1253 VRST----TNADAYVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQ----NLHD 1304
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLNID-----NGNAGMTMPKSSVWPGWGTDK 4406
+ K SESNWE +SS +G EW VS+ + N + K W W T K
Sbjct: 1305 EGKPSESNWEKSSSWDNGCSGGSEWGVSKNTGGEANPESNWEKTTNVEKEDAWSSWNTKK 1364
Query: 4407 VQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQNKNDGKS 4586
+ ES K SD WG + D N
Sbjct: 1365 -----------------------DAQESSK-----SDSGVAWGLKTKDDDADTTPN---- 1392
Query: 4587 QWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTL- 4763
W ++ ++++P + WG + +DK+ KN G P+ A WG+
Sbjct: 1393 -WETRPAQTDSIVPENNEPTSDVWGHKSGSDKSWDKKNGGTESAPAAWGSTDAAVWGSSD 1451
Query: 4764 -----AEADKTGQNKKEGKSQ-----------WPSQSSDPSTD--TWGTLAEADKTGQNK 4889
E+D ++ K+ W +SS +D TWG+ +DKT
Sbjct: 1452 KKNSETESDAAAWGSRDKKNSEVGSGAGVLGPWNKKSSKTESDGATWGS---SDKT---- 1504
Query: 4890 NDGKSQWPS-----QSSDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRY 5054
G + W S +D WG+ + K G S WG W +E P
Sbjct: 1505 KSGAAAWSSWDKKNMETDSEPAAWGSQS---KNKPETESGPSTWGAWDTKKSETESGP-- 1559
Query: 5055 GGWNI----------------NESQKQPQVEEPGETWG------------RHGTEEADVT 5150
GW I N +K+ E WG + E+D
Sbjct: 1560 AGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGSTDAAVWGFSDKNNSETESDAA 1619
Query: 5151 GGNPND--------GNPQWGQWRESHTKPSEESPSYGGWN----IRKSEKRPCD-----A 5279
D G WG W + + E + N +++++ R D
Sbjct: 1620 AWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRDKDDKERIQ 1679
Query: 5280 WGQRDGE-EGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQ 5456
WG + +GGW+ G DWK K+ P R++ + + +FTATRQ
Sbjct: 1680 WGNPAKKFPSSGGWSNGGG-------ADWKGKRNHTPRPP-----RSEDNLAPMFTATRQ 1727
Query: 5457 RLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTK 5636
RLD FTSEEQ +LSDVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+HP K TK
Sbjct: 1728 RLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETK 1787
Query: 5637 MGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYF 5816
+GSGV+++ V+KH+ F D+RCF++VSTDG ++DFSYRK + N++ KYP AE FI KYF
Sbjct: 1788 LGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKYF 1847
Query: 5817 RKPR-SGN 5837
KPR SGN
Sbjct: 1848 TKPRPSGN 1855
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 1672 bits (4330), Expect = 0.0
Identities = 912/1901 (47%), Positives = 1204/1901 (63%), Gaps = 52/1901 (2%)
Frame = +3
Query: 291 ENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCG 470
E SS V +G I + F LA+ EIC QL NPFLGLPLE GKCESCG
Sbjct: 2 EEASSSEVPEGEIVGITFALASHHEICIASISESSINHASQLSNPFLGLPLEFGKCESCG 61
Query: 471 TAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIP 650
EP KC+GHFGYI+LP+PI+HP HV E K + G + +
Sbjct: 62 ATEPDKCEGHFGYIQLPVPIYHPAHVIELKQMLSLLCLKCLKI--KKAKSTSGGLAERLL 119
Query: 651 CSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPI 830
C + I + + R DGA +L+LK PSRSRL G WNFLE+YG+RYG D R LL
Sbjct: 120 GVCCEEASHISIRD-RASDGASYLELKFPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAR 178
Query: 831 EVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASM 1010
EV EIL+RIPEET KKLA KG++PQ+GYIL+ +PVPPNCLSVPDISDG S MS D S
Sbjct: 179 EVKEILRRIPEETRKKLAAKGHIPQEGYILEYLPVPPNCLSVPDISDGLSSMSVDPSRIE 238
Query: 1011 LKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKE 1190
LK VLK++ IK SRSG NF +H+ EAND+ V YL VRGT KA+ + R+ VSK
Sbjct: 239 LKDVLKRVVAIKTSRSGETNFESHKAEANDMYRVVDTYLQVRGTAKAARTMDMRYRVSKI 298
Query: 1191 TNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTER 1370
++ SS+KAW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P+EIAQ+ITFE++V+
Sbjct: 299 SDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEDRVSVH 358
Query: 1371 NRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPST 1550
N LQELVD K CL+Y G +TYSLR+GS GHT LK GQV+ RR+MDGD+VFINRPP+T
Sbjct: 359 NIRYLQELVDKKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTT 418
Query: 1551 HKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQ 1730
HKHSLQA VY+H D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV+ELFSV++Q
Sbjct: 419 HKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVDKQ 478
Query: 1731 LLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSR 1910
LLSSH+G M E F DKATAQQLAM+ S SL PPAL KS +G
Sbjct: 479 LLSSHTGQLILQMGCDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPA 538
Query: 1911 WTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDAL 2090
WT QILQ A P R +C G+R ++ S++++ DF DV+ S+ SEI++S+F +KG K+AL
Sbjct: 539 WTVFQILQLAFPERLSCKGDRFMVDGSDLLRFDFGVDVMASIISEIVTSIFLEKGPKEAL 598
Query: 2091 EVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNV-QDISPLLHHLRSTYNELVE 2267
F+SLQPLLME++F EG+S+ L+D S+ ++ + + ++ SP++ LR +Y + E
Sbjct: 599 GFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMAVIHNLIIRETSPMVSRLRLSYED--E 656
Query: 2268 LQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRT 2447
LQ+EN + VK NF+LK ++ NLID KS S+INK+V D+ KFY++T
Sbjct: 657 LQLENSIHKVKEVAANFMLKSYSMRNLIDMKSNSAINKLVQQTGFLGLQLSDKKKFYTKT 716
Query: 2448 LVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLT 2627
LVEDM F K+ G S FG++K CFF GL+PYEE+ HSI++REV+VRSSRGL
Sbjct: 717 LVEDMALFCKRKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 2628 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAA 2807
EPGTLFKNLMA+LRD+VI DGTVRN CSNS++QF+YG + Q + AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGVLAA 833
Query: 2808 TAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKE 2987
TA+SNPAYKAVLDS+ +SNSSWELMKE+LLCKV F+N+ N RRVILYLN+C CGK++C+E
Sbjct: 834 TAMSNPAYKAVLDSTANSNSSWELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQE 893
Query: 2988 NAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
NAA VRN+L KVSLK AV FLVEY KQ+ E ++ L GHIH SM
Sbjct: 894 NAACTVRNKLNKVSLKATAVEFLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISM 953
Query: 3165 HEVLLECQETISSF-RKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
++ +C++ I+S +KKK KR LSVS+CC F+ C S+ S +PCL FS+ T
Sbjct: 954 QDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSYNAT 1013
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
+ D LE ++ N I P+LL T++KGDPR+ SANIIW S D TTW+RN +++GE L
Sbjct: 1014 NPD-LERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++ +EK+ VKQ+GDAWR+V+DSCL V HLIDT+RSIPY+IKQVQ+LLG+SCAF+Q V+RL
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRL 1132
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
S SVKMV+KGVLKEH+ L+AN+MTC+GN++GFNSGGYKAL RSLN++ PFTEATL TPRK
Sbjct: 1133 SASVKMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRK 1192
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFE+AAEKCH DSLS++V SC WGK V VGTG++F++LW++KE GL+ DVY+FLQ+
Sbjct: 1193 CFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQM 1252
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
VRS+ ++ + SPE + G P F+DSAE Q +
Sbjct: 1253 VRSTTSSDAFVSSPGFDVTEEEMAEWAE----SPERDSALGEPKFEDSAEFQ----NLHD 1304
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLNID-----NGNAGMTMPKSSVWPGWGTDK 4406
K SESNWE +SS +G EW VS+ + N ++ K W GW T K
Sbjct: 1305 DGKQSESNWEKSSSWDNGCSGGSEWGVSKSTGGESNTESNWEKTTSVEKEDAWSGWNTKK 1364
Query: 4407 VQTQVXXXXXXXXXXXXXXXGGWNTMES-QKWPSQLSD--------PADTWGTLAEADKI 4559
+ NT + + P+Q+ +D WG + ++K
Sbjct: 1365 DAQESSKSDSGGAWGIKTKDDDANTTPNWETRPAQMDSIVPEINEPTSDVWGLKSVSEKP 1424
Query: 4560 GQNKNDGKSQWPSQ--SDMPKKWPSQS-----SDPAAGTWGTLAEADKTGQNKNDGKS-- 4712
KN G P+ S W S + ++ A WG+ DK + G
Sbjct: 1425 WNKKNWGTESAPAAWGSTDADAWGSSNKKNSETESDAAAWGS---RDKRNSDIGSGAGVL 1481
Query: 4713 -QWPSQSSDPSADT--WGTLAEADKTGQNKKEGK--SQWPSQSSDPSTDT--WGTLAEAD 4871
W +SS+ +D WG+ +G+ K + S W + +P ++ WG+
Sbjct: 1482 GPWNKKSSETESDAAAWGS------SGKTKSDAATWSPWDKNNMEPDSEPAGWGSQGNMK 1535
Query: 4872 KTGQNKNDGKSQWPSQSSDPSAGTWGTLAEADKTGQNKNDGKSQWG-QWKNSAKPSEESP 5048
+ +++G S S + A WG+ DK N S WG Q K A+
Sbjct: 1536 SETETESNGASWGSSGKTKSGAAAWGS---CDKNNMETNSEPSAWGSQGKKKAETESGPA 1592
Query: 5049 RYGGWN--INESQK-----------QPQVEEPGETWGRHG--TEEADVTGGNPNDGNPQW 5183
+G W+ I+E++ + E WG G + A N +DGNP W
Sbjct: 1593 SWGAWDKKISETESGLAGWGNGDKINSETESGAAAWGSWGQPSPTAADKDTNEDDGNP-W 1651
Query: 5184 GQWRESHT--KPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNKSEGKSQSSNAG 5357
+E+ + K +E +G ++K P D GGW+ G
Sbjct: 1652 VSLKETKSGEKDEKEKSQWGN----PAKKFPSDG--------SYGGWSNGGG-------A 1692
Query: 5358 DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIM 5537
+W+ K+ P R++ + + +FTAT+QRLD FTSEEQ +LSDVEP+++++++IM
Sbjct: 1693 EWRGKRNHTPRPP-----RSEDNLAPMFTATKQRLDSFTSEEQELLSDVEPVMRTLRKIM 1747
Query: 5538 HQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVST 5717
H S Y DG+P++ DD+++VL+ + N+HP+K K+GS V+++ V+KH++F DTRCF++VST
Sbjct: 1748 HMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDTRCFFVVST 1807
Query: 5718 DGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR-SGN 5837
DG ++DFSYRK + N++ KYP AE FI KYF+KPR SGN
Sbjct: 1808 DGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSGN 1848
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 1656 bits (4288), Expect = 0.0
Identities = 905/1922 (47%), Positives = 1186/1922 (61%), Gaps = 73/1922 (3%)
Frame = +3
Query: 291 ENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCG 470
E +S ++DG I + F LA+ EIC QL N FLGLPLE GKCESCG
Sbjct: 2 EEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCG 61
Query: 471 TAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIP 650
EP KC+GHFGYI+LP+PI+HP HV+E K G + +
Sbjct: 62 ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI--KKAKGTSGGLADRLL 119
Query: 651 CSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPI 830
C + +I +++ R DGA +L+LK+PSRSRL G WNFLE+YG+RYG D R LL
Sbjct: 120 GVCCEEASQISIKD-RASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAR 178
Query: 831 EVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASM 1010
EV EIL+RIPEE+ KKL KG++PQ+GYIL+ +PVPPNCLSVP+ SDG S MS D S
Sbjct: 179 EVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIE 238
Query: 1011 LKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKE 1190
LK VLK++ IK SRSG NF +H+ EA+++ V YL VRGT KA+ + + R+GVSK
Sbjct: 239 LKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKI 298
Query: 1191 TNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTER 1370
++ SS+KAW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P+EIAQ+ITFEE+V+
Sbjct: 299 SDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH 358
Query: 1371 NRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPST 1550
NR LQ+LVD K CL+Y G +TYSLR+GS GHT LK GQV+ RR+MDGD+VFINRPP+T
Sbjct: 359 NRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTT 418
Query: 1551 HKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQ 1730
HKHSLQA VY+H D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV+ELFSVE+Q
Sbjct: 419 HKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQ 478
Query: 1731 LLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSR 1910
LLSSH+G M E F DKATAQQLAM+ S SL PPAL KS +G
Sbjct: 479 LLSSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPA 538
Query: 1911 WTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDAL 2090
WT QILQ A P R +C G+R L+ S+++K DF D + S+ +EI++S+F +KG K+ L
Sbjct: 539 WTVFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETL 598
Query: 2091 EVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNV-QDISPLLHHLRSTYNELVE 2267
F+SLQPLLME++F EG+S+ L+D S+ ++ + + + ++ISP++ LR +Y + E
Sbjct: 599 GFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRD--E 656
Query: 2268 LQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRT 2447
LQ+EN + VK NF+LK ++ NLID KS S+I K+V D+ KFY++T
Sbjct: 657 LQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKT 716
Query: 2448 LVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLT 2627
LVEDM F K+ G S FG++K CFF GL+PYEE+ HSI++REV+VRSSRGL
Sbjct: 717 LVEDMAIFCKRKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 2628 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAA 2807
EPGTLFKNLMA+LRD+VI DGTVRN CSNS+IQF+YG + Q + AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAA 833
Query: 2808 TAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKE 2987
TA+SNPAYKAVLDSSP+SNSSWELMKE+LLCKV F+N N RRVILYLN+C CGK++C+E
Sbjct: 834 TAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893
Query: 2988 NAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
NAA VRN+L KVSLKD AV FLVEY KQ E ++ L GHIH SM
Sbjct: 894 NAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISM 953
Query: 3165 HEVLLECQETISSF-RKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
++ +C++ I+S +KKK KR LSVSECC F+ C S+ S +PCL FS+ T
Sbjct: 954 QDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNAT 1013
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
D LE ++ N + P+LL ++KGD R+ SANIIW S D TTW+RN +++GE L
Sbjct: 1014 DPD-LERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++ +EK+ VKQ+GDAWR+V+DSCL V HLIDT+RSIPY++KQVQ+LLG+SCAF+Q V+RL
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRL 1132
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
S SV+MV+KGVLKEH+ L+AN+MTC+G ++GFNSGGYKAL RSLN++ PFTEATL PRK
Sbjct: 1133 SASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRK 1192
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFE+AAEKCH DSLS++V SC WGK V VGTG++F++LW++KE GL+ DVY+FLQ+
Sbjct: 1193 CFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQM 1252
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
V S+ +N SPE + G P F+DSA+ Q +
Sbjct: 1253 VIST----TNADAFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADFQ----NLHD 1304
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLNID-----NGNAGMTMPKSSVWPGWGTDK 4406
+ K S +NWE +SS +G EW VS+ + N + K W W T K
Sbjct: 1305 EGKPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRK 1364
Query: 4407 VQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQNKNDGKS 4586
+ ES K SD WG + N S
Sbjct: 1365 -----------------------DAQESSK-----SDSGGAWGIKTKDADADTTPNWETS 1396
Query: 4587 QWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWG--- 4757
P S +P ++++P + WG + +DK+ KN G P+ A WG
Sbjct: 1397 PAPKDSIVP-----ENNEPTSDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSD 1451
Query: 4758 -----TLAEADKTGQNKKEGKS---------QWPSQSSDPSTD--TWGTLAEADKTGQNK 4889
T ++A G K W +SS+ ++ TWG+ +DKT
Sbjct: 1452 KKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATWGS---SDKT---- 1504
Query: 4890 NDGKSQWPSQS-----SDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRY 5054
G + W S +D WG+ K G + WG W K SE P
Sbjct: 1505 KSGAAAWNSWDKKNIETDSEPAAWGSQG---KKNSETESGPAAWGAWDK--KKSETEPGP 1559
Query: 5055 GGWNINESQKQPQVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEESPSY 5234
GW + + +K + E G +++D G G+ W S SE
Sbjct: 1560 AGWGMGD-KKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAWGSSDKNNSETESDA 1618
Query: 5235 GGWNIRKSEKRPCDA-------WGQRD--------GEEGTGGW--------NKSEGKSQS 5345
W R + ++ WGQ E+ W + + K +S
Sbjct: 1619 AAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERS 1678
Query: 5346 ---------------SNAG--DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFT 5474
SN G DWK + P R++ + + +FTATRQRLD FT
Sbjct: 1679 QWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFT 1733
Query: 5475 SEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVN 5654
SEEQ +LSDVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+HP K TK+GSGV+
Sbjct: 1734 SEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVD 1793
Query: 5655 YVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR-S 5831
++ V+KH+ F D+RCF++VSTDG ++DFSYRK + N++ KYP AE FI KYF KPR S
Sbjct: 1794 FITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPS 1853
Query: 5832 GN 5837
GN
Sbjct: 1854 GN 1855
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 1654 bits (4284), Expect = 0.0
Identities = 905/1922 (47%), Positives = 1185/1922 (61%), Gaps = 73/1922 (3%)
Frame = +3
Query: 291 ENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCG 470
E +S ++DG I + F LA+ EIC QL N FLGLPLE GKCESCG
Sbjct: 2 EEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCG 61
Query: 471 TAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIP 650
EP KC+GHFGYI+LP+PI+HP HV+E K G + +
Sbjct: 62 ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI--KKAKGTSGGLADRLL 119
Query: 651 CSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPI 830
C + +I +++ R DGA +L+LK+PSRSRL G WNFLE+YG+RYG D R LL
Sbjct: 120 GVCCEEASQISIKD-RASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAR 178
Query: 831 EVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASM 1010
EV EIL+RIPEE+ KKL KG++PQ+GYIL+ +PVPPNCLSVP+ SDG S MS D S
Sbjct: 179 EVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIE 238
Query: 1011 LKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKE 1190
LK VLK++ IK SRSG NF +H+ EA+++ V YL VRGT KA+ + + R+GVSK
Sbjct: 239 LKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKI 298
Query: 1191 TNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTER 1370
++ SS+KAW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P+EIAQ+ITFEE+V+
Sbjct: 299 SDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH 358
Query: 1371 NRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPST 1550
NR LQ+LVD K CL+Y G +TYSLR+GS GHT LK GQV+ RR+MDGD+VFINRPP+T
Sbjct: 359 NRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTT 418
Query: 1551 HKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQ 1730
HKHSLQA VY+H D+TVKINPL+C PL ADFDGDCVHLFYPQSL+AKAEV+ELFSVE+Q
Sbjct: 419 HKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQ 478
Query: 1731 LLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSR 1910
LLSSH+G M E F DKATAQQLAM+ S SL PPAL KS +G
Sbjct: 479 LLSSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPA 538
Query: 1911 WTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDAL 2090
WT QILQ A P R +C G+R L+ S+++K DF D + S+ +EI++S+F +KG K+ L
Sbjct: 539 WTVFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETL 598
Query: 2091 EVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNV-QDISPLLHHLRSTYNELVE 2267
F+SLQPLLME++F EG+S+ L+D S+ ++ + + + ++ISP++ LR +Y + E
Sbjct: 599 GFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRD--E 656
Query: 2268 LQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRT 2447
LQ+EN + VK NF+LK ++ NLID KS S+I K+V D+ KFY++T
Sbjct: 657 LQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKT 716
Query: 2448 LVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLT 2627
LVEDM F K+ G S FG++K CFF GL+PYEE+ HSI++REV+VRSSRGL
Sbjct: 717 LVEDMAIFCKRKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLA 773
Query: 2628 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAA 2807
EPGTLFKNLMA+LRD+VI DGTVRN CSNS IQF+YG + Q + AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSXIQFKYGVDSERGHQGLFEAGEPVGVLAA 833
Query: 2808 TAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKE 2987
TA+SNPAYKAVLDSSP+SNSSWELMKE+LLCKV F+N N RRVILYLN+C CGK++C+E
Sbjct: 834 TAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893
Query: 2988 NAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
NAA VRN+L KVSLKD AV FLVEY KQ E ++ L GHIH SM
Sbjct: 894 NAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISM 953
Query: 3165 HEVLLECQETISSF-RKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDT 3341
++ +C++ I+S +KKK KR LSVSECC F+ C S+ S +PCL FS+ T
Sbjct: 954 QDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNAT 1013
Query: 3342 SSDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELAL 3521
D LE ++ N + P+LL ++KGD R+ SANIIW S D TTW+RN +++GE L
Sbjct: 1014 DPD-LERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072
Query: 3522 EIVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRL 3701
++ +EK+ VKQ+GDAWR+V+DSCL V HLIDT+RSIPY++KQVQ+LLG+SCAF+Q V+RL
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRL 1132
Query: 3702 STSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRK 3881
S SV+MV+KGVLKEH+ L+AN+MTC+G ++GFNSGGYKAL RSLN++ PFTEATL PRK
Sbjct: 1133 SASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRK 1192
Query: 3882 CFERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQL 4061
CFE+AAEKCH DSLS++V SC WGK V VGTG++F++LW++KE GL+ DVY+FLQ+
Sbjct: 1193 CFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQM 1252
Query: 4062 VRSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQYDQIKTLE 4241
V S+ +N SPE + G P F+DSA+ Q +
Sbjct: 1253 VIST----TNADAFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADFQ----NLHD 1304
Query: 4242 KEKSSESNWEMNSSLIKQSNGSREWKVSQPLNID-----NGNAGMTMPKSSVWPGWGTDK 4406
+ K S +NWE +SS +G EW VS+ + N + K W W T K
Sbjct: 1305 EGKPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRK 1364
Query: 4407 VQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSDPADTWGTLAEADKIGQNKNDGKS 4586
+ ES K SD WG + N S
Sbjct: 1365 -----------------------DAQESSK-----SDSGGAWGIKTKDADADTTPNWETS 1396
Query: 4587 QWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWG--- 4757
P S +P ++++P + WG + +DK+ KN G P+ A WG
Sbjct: 1397 PAPKDSIVP-----ENNEPTSDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSD 1451
Query: 4758 -----TLAEADKTGQNKKEGKS---------QWPSQSSDPSTD--TWGTLAEADKTGQNK 4889
T ++A G K W +SS+ ++ TWG+ +DKT
Sbjct: 1452 KKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATWGS---SDKT---- 1504
Query: 4890 NDGKSQWPSQS-----SDPSAGTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRY 5054
G + W S +D WG+ K G + WG W K SE P
Sbjct: 1505 KSGAAAWNSWDKKNIETDSEPAAWGSQG---KKNSETESGPAAWGAWDK--KKSETEPGP 1559
Query: 5055 GGWNINESQKQPQVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESHTKPSEESPSY 5234
GW + + +K + E G +++D G G+ W S SE
Sbjct: 1560 AGWGMGD-KKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAWGSSDKNNSETESDA 1618
Query: 5235 GGWNIRKSEKRPCDA-------WGQRD--------GEEGTGGW--------NKSEGKSQS 5345
W R + ++ WGQ E+ W + + K +S
Sbjct: 1619 AAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERS 1678
Query: 5346 ---------------SNAG--DWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFT 5474
SN G DWK + P R++ + + +FTATRQRLD FT
Sbjct: 1679 QWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPP-----RSEDNLAPMFTATRQRLDSFT 1733
Query: 5475 SEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVN 5654
SEEQ +LSDVEP+++++++IMH S Y DGDP++ DD+++VL+ + N+HP K TK+GSGV+
Sbjct: 1734 SEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVD 1793
Query: 5655 YVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR-S 5831
++ V+KH+ F D+RCF++VSTDG ++DFSYRK + N++ KYP AE FI KYF KPR S
Sbjct: 1794 FITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPS 1853
Query: 5832 GN 5837
GN
Sbjct: 1854 GN 1855
>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
gi|557112419|gb|ESQ52703.1| hypothetical protein
EUTSA_v10016128mg [Eutrema salsugineum]
Length = 1874
Score = 1647 bits (4266), Expect = 0.0
Identities = 888/1891 (46%), Positives = 1191/1891 (62%), Gaps = 42/1891 (2%)
Frame = +3
Query: 291 ENHLSSHVIDGRITAMRFNLATDQEICTXXXXXXXXXXXXQLRNPFLGLPLESGKCESCG 470
E+ SS +++G I +RF LAT EICT QL N FLGLPLE G+CESCG
Sbjct: 2 EDAASSDILEGEIVGIRFALATPHEICTASISDSAINHSSQLSNSFLGLPLEFGRCESCG 61
Query: 471 TAEPGKCDGHFGYIELPIPIFHPCHVSEXXXXXXXXXXXXXXXXGKIRHNGESGRSSNIP 650
EP KC+GHFGYIELP+PI+HP HVSE K + G + +
Sbjct: 62 ATEPDKCEGHFGYIELPVPIYHPAHVSELKQMLSLLCLKCLNI--KKAKSTSGGLAERLL 119
Query: 651 CSYCPDVPKIYVEEKRTKDGAIFLQLKVPSRSRLLDGHWNFLEKYGFRYGDDLCRTLLPI 830
C + I + EK + DGA +L+LK PSRSRL +G WNFLE+YG+RYG D R LL
Sbjct: 120 GVCCEEASNISIREKAS-DGASYLELKFPSRSRLQEGCWNFLERYGYRYGSDYTRPLLAR 178
Query: 831 EVLEILKRIPEETGKKLAGKGYLPQDGYILQKVPVPPNCLSVPDISDGTSIMSSDLSASM 1010
EV EI++R+PEET KKL KG++PQ+GYIL+ +PVPPNCLSVPD+SDG S MS D S
Sbjct: 179 EVKEIIRRMPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGFSSMSVDPSRIE 238
Query: 1011 LKKVLKQIEIIKKSRSGPPNFMAHEVEANDLQLAVAQYLHVRGTTKASHDTNTRFGVSKE 1190
LK VLK++ IK SRSG NF +H++EAND+ V YL VRGT K + + + R+GVSK
Sbjct: 239 LKDVLKKVVAIKNSRSGETNFESHKIEANDMFRVVDTYLRVRGTAKPTRNIDVRYGVSKI 298
Query: 1191 TNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPLEIAQKITFEEKVTER 1370
++ SS+KAW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P+EIAQ+ITFEE+V+
Sbjct: 299 SDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRNVNEVGIPVEIAQRITFEERVSVH 358
Query: 1371 NRDNLQELVDHKFCLTYKDGVSTYSLREGSTGHTSLKVGQVLQRRIMDGDIVFINRPPST 1550
N +LQ+LVD+K CL+Y G +TYSLR+GS GHT LK GQ++ RR+MDGD+VFINRPP+T
Sbjct: 359 NVGHLQDLVDNKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDVVFINRPPTT 418
Query: 1551 HKHSLQAFSVYIHNDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEQQ 1730
HKHSLQA VY+H D+TVKINPL+CGPL ADFDGDCVHLFYPQSL AKAEV+ELFSV++Q
Sbjct: 419 HKHSLQALRVYVHEDNTVKINPLMCGPLSADFDGDCVHLFYPQSLTAKAEVMELFSVDKQ 478
Query: 1731 LLSSHSGXXXXXXXXXXXXXXXRMFEVAFFDKATAQQLAMFVSPSLGPPALLKSKCAGSR 1910
L SSH+G M E + DKATAQQLAM+ S SL PPA+ KS +G
Sbjct: 479 LRSSHTGQLILQLGCDSLLSLRVMLEEMYLDKATAQQLAMYGSLSLSPPAVRKSYESGPA 538
Query: 1911 WTALQILQTALPARFNCIGERHLISQSEIVKVDFNRDVLQSLFSEIISSVFFKKGSKDAL 2090
WT QILQ A P R + G+R ++S+S+++ DF D + S+ + I++++ +KG K+AL
Sbjct: 539 WTVFQILQLAFPERLSSKGDRFIVSESDLLCFDFGVDAMPSIINGIVTAIMLEKGPKEAL 598
Query: 2091 EVFNSLQPLLMENMFLEGYSVCLKDFSIPKSITEDLQRNV-QDISPLLHHLRSTYNELVE 2267
F+SLQPLLME + +G+SV L+D S+ + + + ++ISP++ LR +Y + E
Sbjct: 599 GFFDSLQPLLMEFLSAQGFSVSLEDLSMSREDMNVIHNLITREISPMVSRLRLSYED--E 656
Query: 2268 LQVENHLRSVKVAVVNFILKLSALGNLIDSKSESSINKVVXXXXXXXXXXYDRGKFYSRT 2447
LQ+EN + VK NF+LK ++ NLID KS S+INK+V D+ KFY++T
Sbjct: 657 LQLENSIHKVKEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKFYTKT 716
Query: 2448 LVEDMTSFFHSKFAVSGVDYPSEAFGLIKSCFFQGLNPYEELVHSISSREVLVRSSRGLT 2627
LVEDM F K+ G S FG++K CFF GL+ YEE+ HSI++REV+VRSSRGL
Sbjct: 717 LVEDMAQFCKRKY---GRISSSGDFGIVKGCFFHGLDAYEEMAHSIAAREVIVRSSRGLA 773
Query: 2628 EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGEGNGTNSQSTYPAGEPVGVLAA 2807
EPGTLFKNLMA+LRD+VI DGTVRN CSNSI+QF Y + Q + AGEPVGVLAA
Sbjct: 774 EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSIVQFSYEGNSDRGHQGLFEAGEPVGVLAA 833
Query: 2808 TAISNPAYKAVLDSSPSSNSSWELMKEILLCKVTFKNDLNVRRVILYLNDCACGKKYCKE 2987
TA+SNPAYKAVLDS+PSSNSSWELMKE+LLCKV F+N N RRVILYLN+C CGKKYC+E
Sbjct: 834 TAMSNPAYKAVLDSTPSSNSSWELMKEVLLCKVNFQNSANDRRVILYLNECRCGKKYCQE 893
Query: 2988 NAAFLVRNQLKKVSLKDIAVNFLVEY-KQRVSPESSTTNAALVGHIHXXXXXXXXXXRSM 3164
NAA+ VRN+LKKVSLK+ AV FLVEY KQ+ E +++L GHIH SM
Sbjct: 894 NAAYTVRNKLKKVSLKETAVEFLVEYRKQQAISEIFGNDSSLRGHIHLNKTLLQEWNISM 953
Query: 3165 HEVLLECQETISSFRKKKNLLGQSLKRIFLSVSECCCFQQSCDSEWSQIPCLQFSWQDTS 3344
++L +C++ I+S +KK KR LS SECC F+ C S+ S +PCL FS + +
Sbjct: 954 QDILQKCEDAINSLVQKKKKKADDFKRTNLSFSECCSFRDPCASKDSDMPCLMFSSYNAT 1013
Query: 3345 SDTLENISQIMANMICPILLGTIVKGDPRVYSANIIWISPDTTTWVRNPCRTQKGELALE 3524
LE ++ + I P+LL T++KGDPR++SANI W SP+TTTW+ N +++GE L+
Sbjct: 1014 DPDLERTLDVLCHTIYPVLLETVIKGDPRIFSANITWNSPETTTWIWNRHASRRGEWVLD 1073
Query: 3525 IVLEKAVVKQNGDAWRIVLDSCLPVFHLIDTRRSIPYAIKQVQDLLGISCAFDQVVKRLS 3704
+ +EK+ VKQ+GDAWR+V+DSCL V HLIDT RSIPY+IKQVQ+LLG+SCAF+Q V+RLS
Sbjct: 1074 VTVEKSAVKQSGDAWRVVMDSCLSVLHLIDTTRSIPYSIKQVQELLGLSCAFEQAVQRLS 1133
Query: 3705 TSVKMVAKGVLKEHLTLVANSMTCTGNLIGFNSGGYKALFRSLNVQVPFTEATLFTPRKC 3884
SV+MV+KGVLKEH+ LVAN+MTC+GN++GFNSGGYKAL RSLN++ PFTEATL TPRKC
Sbjct: 1134 ASVRMVSKGVLKEHIILVANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKC 1193
Query: 3885 FERAAEKCHMDSLSSIVASCCWGKHVAVGTGARFDILWDKKEMGLNKDGGIDVYNFLQLV 4064
FE+AAEKCH DSLS++V SC WGK V VGTG++F++LW+KKE GL + DVY+FLQ+V
Sbjct: 1194 FEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSKFELLWNKKETGLENENETDVYSFLQMV 1253
Query: 4065 RSSDERESNTACXXXXXXXXXXXXXXXXXXXSPEYNFDDGRPIFDDSAEVQ--YDQIKTL 4238
RS+ +N SPE + G F+DSAE Q +D+ K
Sbjct: 1254 RST----TNADAYASSPGFDVTEEDMAEWAESPERDSALGELKFEDSAEFQNIHDEGKPS 1309
Query: 4239 EKE----KSSESNWEMNSSLIKQSNGSREWKVSQPLNIDNGNAGMTMPK-------SSVW 4385
E + S S W+++ + + N W+ + + ++ ++G K S W
Sbjct: 1310 ESKWDNGFSGGSEWDLSRNTGGEENPQSGWEKTTNVEKEDASSGWNSKKDAQESSRSDSW 1369
Query: 4386 PGWGTDKVQTQVXXXXXXXXXXXXXXXGGWNTMESQKWPSQLSD---PADTWGTLAEADK 4556
WG+ W T +QK + + D WG + ++K
Sbjct: 1370 RAWGSKPKDNDANTTP------------SWETRPAQKDSMVIENNEPSVDVWGPKSVSEK 1417
Query: 4557 IGQNKNDGKSQWPSQSDMPKKWPSQSSDPAAGTWGTLAEADKTGQNKNDGKSQWPS---Q 4727
+ + KN K++ + + + + ++ A WG DK + + W +
Sbjct: 1418 VWKKKN-SKTESAPAAWVSRDKKNSETELDASAWGF---GDKVNKETETDAAAWGAGYKM 1473
Query: 4728 SSDPSADTWGTLAE--------------ADKTGQNKKEGKSQW---PSQSSD--PSTDTW 4850
+ + + WG+ E + T + G W P++SSD T TW
Sbjct: 1474 NKETESAAWGSWGEKRSETESGDAGWGFRNNTNSKVESGAGAWGPQPTKSSDTGSGTPTW 1533
Query: 4851 GTLAEADKTGQNKNDGKSQWPSQSSDPSAGTWGTLAEADKTGQNKN--DGKSQWGQWKNS 5024
GT DK G + W S + S G G K +N + G + WG+
Sbjct: 1534 GTW---DKKNSETESGPAAWGSPDNKNSEGELGATNWGFKERKNSDTGSGSAVWGK---- 1586
Query: 5025 AKPSEESPRYGGWNINESQKQPQVEEPGETWGRHGTEEADVTGGNPNDGNPQWGQWRESH 5204
K SE P W ++WG+ +D N +DGNP W + ++
Sbjct: 1587 -KNSETDPSPAAW---------------DSWGQPSATSSD-KDTNGDDGNP-WVSLKATN 1628
Query: 5205 TKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNKSEGKSQSSNAGDWKIKKGRA 5384
+ +E+ + W I P + D G W SN G KK R
Sbjct: 1629 SGEKDETET-RQWGI------PTKRYPSSDSH---GSW---------SNGGGADGKKNRP 1669
Query: 5385 AMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGD 5564
+PG ++ + +FTAT QRLD FTSEEQ +LSDVEP+ + ++ I+H+S Y DG+
Sbjct: 1670 PRTPG-----SEMKLAPMFTATGQRLDMFTSEEQELLSDVEPVTRKLRNILHRSGYPDGE 1724
Query: 5565 PLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSY 5744
P++ D+SYVL+HV N+HPDK +K+GSGV+++ V+KH++F ++RCF++VSTDG ++DFSY
Sbjct: 1725 PISDADKSYVLEHVLNFHPDKDSKLGSGVDFITVDKHTTFTESRCFFVVSTDGAKQDFSY 1784
Query: 5745 RKCMENFIKDKYPGMAESFIKKYFRKPRSGN 5837
RKC+ N++ +K+P +AE FI KY+++ N
Sbjct: 1785 RKCIINYVMEKFPNLAEEFIGKYYKRRDDAN 1815