BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00004322
         (3202 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28783.3| unnamed protein product [Vitis vinifera]              942   0.0  
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   941   0.0  
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   928   0.0  
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   920   0.0  
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr...   918   0.0  
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife...   915   0.0  
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ...   911   0.0  
ref|XP_007131473.1| hypothetical protein PHAVU_011G016600g [Phas...   880   0.0  
ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobro...   877   0.0  
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   865   0.0  
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               862   0.0  
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 857   0.0  
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   853   0.0  
ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis...   851   0.0  
gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]                  857   0.0  
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   846   0.0  
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   843   0.0  
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom...   843   0.0  
ref|XP_007201211.1| hypothetical protein PRUPE_ppa001622mg [Prun...   841   0.0  
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   840   0.0  

>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  942 bits (2434), Expect(2) = 0.0
 Identities = 502/735 (68%), Positives = 553/735 (75%), Gaps = 2/735 (0%)
 Frame = -3

Query: 2651 EKKPLNKSPIE--PNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLSVXXXXXXXXXEI 2478
            E K L   P+    + DS+DDKPLSA++   S  LP+ NS HV +GLS            
Sbjct: 2    ENKQLINPPVANGESEDSEDDKPLSAKL---SARLPKGNS-HVLKGLSSPVLQSQ----- 52

Query: 2477 PFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNKRTLSDAN 2298
                    K+   SS     DS +E P   K+Q   S KG +    S K+L+ + LS  +
Sbjct: 53   --------KTKVDSSD----DSEDEIPLLLKLQLK-SRKGAS----SSKLLDSKGLS--S 93

Query: 2297 PSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRMXXXXXXXXXXXXXXX 2118
            P++  P + QK            A V  +   +D +D++PLS +                
Sbjct: 94   PASSRP-QSQK------------AKVNNKNLSDDSEDEIPLSSKFRLKTVSSDNKKASKT 140

Query: 2117 XKVFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLEHNGVIF 1938
              +                                    VPP+ GEG+KW+TLEHNGVIF
Sbjct: 141  KVI--------PSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIF 192

Query: 1937 PPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWRLILGKN 1758
            PPPYK HGVKMLYNG+PVDLTPEQEEVATMFAVMKDT+YATKPRFIENFMNDWR+ LGKN
Sbjct: 193  PPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKN 252

Query: 1757 HIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDGVKEKVG 1578
            H+IKKFELC+FTPIYEWH  EKEKKKQM+T               KYMWA+VDGVKEKVG
Sbjct: 253  HVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVG 312

Query: 1577 NFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEVKHDNTV 1398
            NFRVEPPGLFRGRGEHPKMGKLK+RI PSDITINIGK+AP+PECPIPG+RWKEV+HDNTV
Sbjct: 313  NFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTV 372

Query: 1397 TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTKDFASKD 1218
            TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR+LKDYI +IRATYTKDF +KD
Sbjct: 373  TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKD 432

Query: 1217 ITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLQFDFLGKDSI 1038
              KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV LVPPNKL+FDFLGKDSI
Sbjct: 433  TMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSI 492

Query: 1037 RYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS 858
            RYFNTVEVELPVYKAIGQFK+GKS GDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS
Sbjct: 493  RYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS 552

Query: 857  ITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEKMDELKA 678
            ITLDEMLNRE + G+  EKIVIYQHANKEVAIICNHQRSVSKSH  QMSRLSEKM EL+ 
Sbjct: 553  ITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQG 612

Query: 677  VLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQTNVKIEKMERDMKTKEDLK 498
            VLDELKTDL RAKKGKPPL D+DGKPKKN+TPE LE+KIAQTN KIEKMERDMKTKEDLK
Sbjct: 613  VLDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLK 672

Query: 497  TVALGTSKINYLDPR 453
            TVALGTSKINYLDPR
Sbjct: 673  TVALGTSKINYLDPR 687



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAWAMDVDPSFRF
Sbjct: 703 IFNKSLLAKFAWAMDVDPSFRF 724


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  941 bits (2433), Expect(2) = 0.0
 Identities = 520/836 (62%), Positives = 583/836 (69%), Gaps = 10/836 (1%)
 Frame = -3

Query: 2930 PIVFKRS-NITSKQKQLNLEIKKPSF--QRHDGSS-----GKHVAESFSPKNQKSSLEKG 2775
            PIVFKR  N TSKQ QLN E KKPS   Q  +G S     GK    S +    KSS    
Sbjct: 24   PIVFKRGGNSTSKQNQLNPEAKKPSSSSQNSNGQSLNLQKGKSPIPSSNASPMKSSTGSP 83

Query: 2774 KXXXXXXXXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREKKPLNKSPIEPNADSDDD 2595
            K                       ++     + K++  N  +++   KS ++ + DS+DD
Sbjct: 84   KASASSAKASPLKSPLTYTRALTSSNDQLKQASKQVVSNAVKEE--TKSIVD-DEDSEDD 140

Query: 2594 KPLSARIFAASTSLPRNNST--HVSEGLSVXXXXXXXXXEIPFSLRFKFKSGAGSSSEKF 2421
            KPLS+RI  ++ ++ +  +   HV +  S          E+P S RF  KS AG+SS K 
Sbjct: 141  KPLSSRIKGSTNNVNKGVTAPAHVKDEPS-------DDDEVPLSSRFAMKSNAGTSSSKS 193

Query: 2420 YDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNKRTLSDANPSAQCPIKKQKLSDIPVHG 2241
              S+E +PF SK Q NGS K   +  KS  V  KR + +  PS     KK KL D     
Sbjct: 194  IRSSEIRPFPSKSQLNGSTKNDKQQ-KSSVVPTKRPMDNKVPSNHSSAKKPKLLDACTTT 252

Query: 2240 KIGQAHVKAEQKIEDDDDDVPLSQRMXXXXXXXXXXXXXXXXKVFFDXXXXXXXXXXXXX 2061
            K+ Q  VK EQK  DDDD + +SQRM                  F               
Sbjct: 253  KVKQVTVKVEQKA-DDDDHLTISQRMKKADSSANKSS-------FAKKKVTKVVSSSLKK 304

Query: 2060 XXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVD 1881
                                 P S    KKW+TL HNGVIFPPPYK HGVK+LY G+P+D
Sbjct: 305  TTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPID 364

Query: 1880 LTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHL 1701
            LTPEQEEVATMFAVMKDT+Y  KP+F +NF NDWR +LGKNH+I+K + C+F PIYEWH 
Sbjct: 365  LTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKLDDCDFNPIYEWHQ 424

Query: 1700 NEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 1521
             EKEKKKQMST               KYMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKM
Sbjct: 425  QEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKM 484

Query: 1520 GKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVF 1341
            GKLK RIRPSDITINIGKDAPIPECPIPG+RWKEVKHDNTVTWLAFWNDPINPKEFKYVF
Sbjct: 485  GKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKYVF 544

Query: 1340 LAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALR 1161
            LAASSSLKGQSDKEKYEKAR LKDYIH+IRA YTKDFASKDITKRQIAVATYLIDKLALR
Sbjct: 545  LAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVATYLIDKLALR 604

Query: 1160 AGNEKDDDEADTVGCCTLKVENVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQF 981
            AGNEKDDDEADTVGCCTLKV NVE +PPNKL+FDFLGKDSIRY NTVEVELPVYKAIG F
Sbjct: 605  AGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIGHF 664

Query: 980  KSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEK 801
            +  K + DDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLDE L  ET+DG+VAEK
Sbjct: 665  QVAKKQTDDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAEK 724

Query: 800  IVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPL 621
            IVIY  ANK+VAIICNHQR++SKSH AQMSRL+EK++ELK+ L ELKTDL RAKKGKPPL
Sbjct: 725  IVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKIEELKSTLKELKTDLDRAKKGKPPL 784

Query: 620  NDADGKPKKNLTPEALEKKIAQTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
              ADGK K++LTPEA+EKKIA TN KIEKME  MKTKEDLKTVALGTSKINYLDPR
Sbjct: 785  KGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMKTKEDLKTVALGTSKINYLDPR 840



 Score = 46.2 bits (108), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKF WAMDVDP FRF
Sbjct: 856 IFNKSLLAKFTWAMDVDPQFRF 877


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  928 bits (2398), Expect(2) = 0.0
 Identities = 450/515 (87%), Positives = 476/515 (92%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PP+ GEG+KW+TLEHNGVIFPPPYK HGVKMLYNG+PVDLTPEQEEVATMFAVMKDT+YA
Sbjct: 332  PPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYA 391

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
            TKPRFIENFMNDWR+ LGKNH+IKKFELC+FTPIYEWH  EKEKKKQM+T          
Sbjct: 392  TKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEK 451

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSDITINIGK+AP
Sbjct: 452  LKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAP 511

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            +PECPIPG+RWKEV+HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR+
Sbjct: 512  VPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 571

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LKDYI +IRATYTKDF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE
Sbjct: 572  LKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 631

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NV LVPPNKL+FDFLGKDSIRYFNTVEVELPVYKAIGQFK+GKS GDDLFDKLDTSKLNA
Sbjct: 632  NVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNA 691

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLKELMPGLTAKVFRTYNASITLDEMLNRE + G+  EKIVIYQHANKEVAIICNHQRSV
Sbjct: 692  HLKELMPGLTAKVFRTYNASITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSV 751

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH  QMSRLSEKM EL+ VLDELKTDL RAKKGKPPL D+DGKPKKN+TPE LE+KIA
Sbjct: 752  SKSHDVQMSRLSEKMRELQGVLDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIA 811

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            QTN KIEKMERDMKTKEDLKTVALGTSKINYLDPR
Sbjct: 812  QTNTKIEKMERDMKTKEDLKTVALGTSKINYLDPR 846



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAWAMDVDPSFRF
Sbjct: 862 IFNKSLLAKFAWAMDVDPSFRF 883



 Score = 88.6 bits (218), Expect = 2e-14
 Identities = 48/99 (48%), Positives = 62/99 (62%)
 Frame = -3

Query: 2480 IPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNKRTLSDA 2301
            IP S +F+ K+G G+S +K  + +E+KP  S ++ NG  K  +E VKSPK  NKR L  A
Sbjct: 174  IPLSSKFRLKTGMGASLDKLDNFDEKKPLTSTLKPNGISKKDDERVKSPKGQNKRPLGQA 233

Query: 2300 NPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDD 2184
            N S     KK KL D  V GK+ Q  VKAEQK +DDDD+
Sbjct: 234  NTSHHSSSKKPKLLDGSVKGKVKQVSVKAEQKDDDDDDN 272


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  920 bits (2378), Expect(2) = 0.0
 Identities = 508/862 (58%), Positives = 581/862 (67%), Gaps = 36/862 (4%)
 Frame = -3

Query: 2930 PIVFKRSNITSKQKQLNLEIKKPSFQRHDG------------SSGKHVAESFSPKNQKSS 2787
            P VFKR+   S+Q   N E+K+PS    +G            SS K +     P +QK++
Sbjct: 22   PAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKAT 81

Query: 2786 LEKGKXXXXXXXXXXXXXXXXXXXXXXXADKSKHSS-----------EKKLAINDREKKP 2640
                K                          SK SS              LA+  +E+  
Sbjct: 82   TSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIK 141

Query: 2639 LNKSPIEPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGL------------SVXXXXX 2496
                    + DS+DDKPLSAR+        + NS +V++G+            +V     
Sbjct: 142  DGNGLKSDDNDSEDDKPLSARL--------KGNSKNVNQGIGASKADAAISEVNVKTDPE 193

Query: 2495 XXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNKR 2316
                E+P S RF  KS AG+S  K  DS+E+KP ASK+QQNGS     +  KS  V  KR
Sbjct: 194  DSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ-QKSSSVPVKR 251

Query: 2315 TLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRMXXXXXXXXX 2136
             L  A+ S     KK K+SD     K+ Q  VK E+K  DDDD +P+SQRM         
Sbjct: 252  PLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKK-ADDDDHIPISQRM-------KN 303

Query: 2135 XXXXXXXKVFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLE 1956
                    V                                    +P S    KKW+TL 
Sbjct: 304  SAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLV 363

Query: 1955 HNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWR 1776
            HNGVIFPPPY  HGVKMLY G+ V+LTPEQEEVATMFAVM DT+Y  KP+F ENF NDWR
Sbjct: 364  HNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWR 423

Query: 1775 LILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDG 1596
             +LGKNH+I+  E C+F PIY+WH  +KEKKKQMS+               KYMWAIVDG
Sbjct: 424  KLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDG 483

Query: 1595 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEV 1416
            VKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+PSDITINIGKD PIPECPIPG+ WKEV
Sbjct: 484  VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEV 543

Query: 1415 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTK 1236
            KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYIH IRA YTK
Sbjct: 544  KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHSIRAAYTK 603

Query: 1235 DFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLQFDF 1056
            DF S+D T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKL+FDF
Sbjct: 604  DFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 663

Query: 1055 LGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVF 876
            LGKDSI+Y NTVEVELPVYKAIGQF++GK + DDLFDKLDT+KLNAHLKELMPGLTAKVF
Sbjct: 664  LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 723

Query: 875  RTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEK 696
            RTYNASITLD MLN+ T DG+VA KI +YQ ANKEVAIICNHQR+VSK+HSAQMSRL+EK
Sbjct: 724  RTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 783

Query: 695  MDELKAVLDELKTDLVRAKKGKPPL-NDADGKPKKNLTPEALEKKIAQTNVKIEKMERDM 519
            +++LK VL +L+ DL RAKKGKPPL  D+DGK K+NL PEALE+K+AQTN KIEKMERDM
Sbjct: 784  IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM 843

Query: 518  KTKEDLKTVALGTSKINYLDPR 453
            KTKEDLKTVALGTSKINYLDPR
Sbjct: 844  KTKEDLKTVALGTSKINYLDPR 865



 Score = 47.8 bits (112), Expect(2) = 0.0
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAWAMDVDP FRF
Sbjct: 881 IFNKSLLAKFAWAMDVDPEFRF 902


>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|567920950|ref|XP_006452481.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555705|gb|ESR65719.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555707|gb|ESR65721.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 902

 Score =  918 bits (2372), Expect(2) = 0.0
 Identities = 506/862 (58%), Positives = 581/862 (67%), Gaps = 36/862 (4%)
 Frame = -3

Query: 2930 PIVFKRSNITSKQKQLNLEIKKPSFQRHDG------------SSGKHVAESFSPKNQKSS 2787
            P VFKR+   S+Q   N E+K+PS    +G            SS K +     P +QK++
Sbjct: 22   PAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPPPSQKAT 81

Query: 2786 LEKGKXXXXXXXXXXXXXXXXXXXXXXXADKSKHSS-----------EKKLAINDREKKP 2640
                K                          SK SS              LA+  +E+  
Sbjct: 82   TSSAKASPLKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQLPQHNALAVVKKEEIK 141

Query: 2639 LNKSPIEPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGL------------SVXXXXX 2496
                    + DS+DDKPLSAR+        + N+ +V++G+            +V     
Sbjct: 142  DGNGLKSDDNDSEDDKPLSARL--------KGNTKNVNQGIGASKADAAISEVNVKTDPE 193

Query: 2495 XXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNKR 2316
                E+P S RF  KS AG+S  K  DS+E+KP ASK+QQNGS     +  KS  V  KR
Sbjct: 194  DSDDEVPLSSRFP-KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ-QKSSSVPVKR 251

Query: 2315 TLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRMXXXXXXXXX 2136
             L  A+ S     KK K+SD     K+ Q  VK E+K  DDDD +P+SQRM         
Sbjct: 252  PLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKK-ADDDDHIPISQRM-------KN 303

Query: 2135 XXXXXXXKVFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLE 1956
                    V                                    +P S    KKW+TL 
Sbjct: 304  SAPSVKKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLV 363

Query: 1955 HNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWR 1776
            HNGVIFPPPY  HGVKMLY G+ V+LTPEQEEVATMFAVM DT+Y  KP+F ENF NDWR
Sbjct: 364  HNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWR 423

Query: 1775 LILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDG 1596
             +LGKNH+I+  E C+F PIY+WH  +KEKKKQMS+               KYMWAIVDG
Sbjct: 424  KLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDG 483

Query: 1595 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEV 1416
            VKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+PSDITINIGKD PIPECPIPG+ WKEV
Sbjct: 484  VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEV 543

Query: 1415 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTK 1236
            KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD+EKYEKAR LKDYIH IRA YTK
Sbjct: 544  KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTK 603

Query: 1235 DFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLQFDF 1056
            DF S+D T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKL+FDF
Sbjct: 604  DFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 663

Query: 1055 LGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVF 876
            LGKDSI+Y NTVEVELPVYKAIGQF++GK + DDLFDKLDT+KLNAHLKELMPGLTAKVF
Sbjct: 664  LGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVF 723

Query: 875  RTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEK 696
            RTYNASITLD MLN+ T DG+VA KI +YQ ANKEVAIICNHQR+VSK+HSAQMSRL+EK
Sbjct: 724  RTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEK 783

Query: 695  MDELKAVLDELKTDLVRAKKGKPPL-NDADGKPKKNLTPEALEKKIAQTNVKIEKMERDM 519
            +++LK VL +L+ DL RAKKGKPPL  D+DGK K+NL PEALE+K+AQTN KIEKMERDM
Sbjct: 784  IEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDM 843

Query: 518  KTKEDLKTVALGTSKINYLDPR 453
            KTKEDLKTVALGTSKINYLDPR
Sbjct: 844  KTKEDLKTVALGTSKINYLDPR 865



 Score = 47.8 bits (112), Expect(2) = 0.0
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAWAMDVDP FRF
Sbjct: 881 IFNKSLLAKFAWAMDVDPEFRF 902


>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
            gi|296082698|emb|CBI21703.3| unnamed protein product
            [Vitis vinifera]
          Length = 857

 Score =  915 bits (2364), Expect(2) = 0.0
 Identities = 492/735 (66%), Positives = 547/735 (74%), Gaps = 12/735 (1%)
 Frame = -3

Query: 2621 EPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLS-------VXXXXXXXXXEIPFSLR 2463
            E ++DS+DDKPLS R+   S+ LP+   +  + GL                  +IP S +
Sbjct: 110  ELDSDSEDDKPLSVRL---SSGLPKGKGSSNNVGLGRGGVGGVKKEEDDDDDDKIPLSSK 166

Query: 2462 FKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNK-RTLSDANPSA- 2289
            F+ KS            +E+KP   K+ QNG   G ++  KSP VLNK R L   N S  
Sbjct: 167  FQLKS------------DEKKPLPLKVNQNG---GTDKRDKSPTVLNKKRPLDGVNSSLG 211

Query: 2288 -QCPIKKQKLSDIPVHG-KIGQAHVKAEQKIEDDDDD-VPLSQRMXXXXXXXXXXXXXXX 2118
                +KK K+S       K+  A  KAE K+EDDDDD +P+SQRM               
Sbjct: 212  QSSLVKKPKISGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAK 271

Query: 2117 XKVFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLEHNGVIF 1938
             KV                                    VPPS GEG+KW+TL HNGVIF
Sbjct: 272  QKV-----TKVVSSTSFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIF 326

Query: 1937 PPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWRLILGKN 1758
            PPPYK HGVKMLY G+PVDLTPEQEEVATMFAVM DT+Y  K +F ENFM DWR ILGKN
Sbjct: 327  PPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKN 386

Query: 1757 HIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDGVKEKVG 1578
            H+I++ + C+FTPIYEWH  EKEKKKQMST               KYMWAIVDGVKEKVG
Sbjct: 387  HVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVG 446

Query: 1577 NFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEVKHDNTV 1398
            NFRVEPPGLFRGRGEHPKMGKLKRRI PSDITINIGK++ IPECPIPG+ WKEVKHDNTV
Sbjct: 447  NFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTV 506

Query: 1397 TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTKDFASKD 1218
            TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR LK+YI DIRATYTKDF SKD
Sbjct: 507  TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKD 566

Query: 1217 ITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLQFDFLGKDSI 1038
            ITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV   PPN LQFDFLGKDSI
Sbjct: 567  ITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSI 626

Query: 1037 RYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS 858
            RY  TVEVELPVYKAI QF+ GKS  DDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS
Sbjct: 627  RYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS 686

Query: 857  ITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEKMDELKA 678
            ITLDEMLN++TK+G+VA+K+V+YQHANKEVAIICNHQR++SKSH+AQM+RL+EK+DE+K 
Sbjct: 687  ITLDEMLNKDTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKG 746

Query: 677  VLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQTNVKIEKMERDMKTKEDLK 498
            VL+ LKTDL RAKKGKPPL DADGK ++NLTPEALE+KIAQTN KIEKMERD  TKEDLK
Sbjct: 747  VLNGLKTDLARAKKGKPPLKDADGK-RRNLTPEALERKIAQTNAKIEKMERDKDTKEDLK 805

Query: 497  TVALGTSKINYLDPR 453
            TVALGTSKINYLDPR
Sbjct: 806  TVALGTSKINYLDPR 820



 Score = 44.7 bits (104), Expect(2) = 0.0
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           +FNKSLLAKFAWAMDV P FRF
Sbjct: 836 VFNKSLLAKFAWAMDVPPDFRF 857


>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
            gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
            putative [Ricinus communis]
          Length = 891

 Score =  911 bits (2354), Expect(2) = 0.0
 Identities = 503/850 (59%), Positives = 576/850 (67%), Gaps = 24/850 (2%)
 Frame = -3

Query: 2930 PIVFKR-SNITSKQKQLNLEIKKP--SFQRHDGSS-----GKHVAESFSPKNQKSSLEKG 2775
            P+VFKR +N T+KQ Q N E+KKP  S Q  +G S     GK    S      KS +   
Sbjct: 24   PLVFKRGNNSTTKQNQSNPEVKKPLLSSQNSNGQSSNAQKGKSTVPSLKASPVKSPIGSP 83

Query: 2774 KXXXXXXXXXXXXXXXXXXXXXXXADKSKHSSEKKLAIN-----DREKKPLNKSPIE--- 2619
            K                        D+    + K+ A N        K  +    ++   
Sbjct: 84   KASTSSAKASPLRSPVANSKGSSSLDEQLKQASKQNASNVVKDVSSAKPEIGLKSVKHET 143

Query: 2618 ----PNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLSVXXXXXXXXXE---IPFSLRF 2460
                 + DS+DD PLSAR         + N+ +VS+ ++          +   +P   RF
Sbjct: 144  KSNGDDEDSEDDLPLSAR--------RKGNTNNVSKVVTAPKRVKDEDSDDDKVPLCSRF 195

Query: 2459 KFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLNKRTLSDANPSAQCP 2280
              KS AG+S  K  + +E+KP  SK+QQNGS     +  K+P +  KR L  AN S Q  
Sbjct: 196  PMKSTAGTSGNKPNNISEKKPLPSKVQQNGSTSKDKQQ-KAPLIPTKRPLDKANSSEQSS 254

Query: 2279 IKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRMXXXXXXXXXXXXXXXXKVFFD 2100
            IKK KLS      K+ QA VKAE   EDD DD+P++QR                  +   
Sbjct: 255  IKKPKLSAGSTITKVKQATVKAE---EDDPDDIPIAQRKKSLGSSESKLSSAKQKAI--- 308

Query: 2099 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLEHNGVIFPPPYKS 1920
                                              P S    KKW+TL HNGVIFPPPYK 
Sbjct: 309  ----KVVSSSFKKPIKKNKKQMKNTKYSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKP 364

Query: 1919 HGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWRLILGKNHIIKKF 1740
            HG+K+LY G+PVDL PEQEEVATMFAVMKDT+Y  KP+F+ENF NDWR +LG+NH+I+K 
Sbjct: 365  HGIKILYKGRPVDLAPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKLLGRNHVIQKL 424

Query: 1739 ELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEP 1560
            E C+FTPIYEWH  EKEKKKQMST               KYMWAIVDGVKEKVGNFRVEP
Sbjct: 425  EDCDFTPIYEWHEREKEKKKQMSTEEKKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEP 484

Query: 1559 PGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEVKHDNTVTWLAFW 1380
            P LFRGRGEHPKMGKLK+RI+PSDITINIGKDAPIPECPIPG+ WKEVKHDNTVTWLAFW
Sbjct: 485  PALFRGRGEHPKMGKLKKRIQPSDITINIGKDAPIPECPIPGESWKEVKHDNTVTWLAFW 544

Query: 1379 NDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTKDFASKDITKRQI 1200
            NDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYIH+IRA Y KD  SKDITK+QI
Sbjct: 545  NDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYQKDLRSKDITKKQI 604

Query: 1199 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPN-KLQFDFLGKDSIRYFNT 1023
            AVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +P +  L+FDFLGKDSIRY NT
Sbjct: 605  AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPGSFNLKFDFLGKDSIRYENT 664

Query: 1022 VEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDE 843
            VEV+  VY+AIG F+ GK + DDLFDKLDT+KLNAHLKELMPGLTAKVFRTYNASITLDE
Sbjct: 665  VEVKPEVYEAIGTFQKGKKQTDDLFDKLDTTKLNAHLKELMPGLTAKVFRTYNASITLDE 724

Query: 842  MLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEKMDELKAVLDEL 663
             L  ET+DG+VAEK+VIYQ ANKEVAIICNHQR++SKSH AQMS+L EK++ELKA L EL
Sbjct: 725  KLYEETEDGDVAEKVVIYQRANKEVAIICNHQRTISKSHGAQMSKLIEKIEELKATLKEL 784

Query: 662  KTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQTNVKIEKMERDMKTKEDLKTVALG 483
            KTDL RAKKGKPPL DADGK K+NL+PE +EKKIA TN +IEKME +MKTKEDLKTVALG
Sbjct: 785  KTDLDRAKKGKPPLKDADGKQKRNLSPENIEKKIASTNQRIEKMELNMKTKEDLKTVALG 844

Query: 482  TSKINYLDPR 453
            TSKINYLDPR
Sbjct: 845  TSKINYLDPR 854



 Score = 46.2 bits (108), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKF WAMDVDP FRF
Sbjct: 870 IFNKSLLAKFTWAMDVDPQFRF 891


>ref|XP_007131473.1| hypothetical protein PHAVU_011G016600g [Phaseolus vulgaris]
            gi|593104562|ref|XP_007131474.1| hypothetical protein
            PHAVU_011G016600g [Phaseolus vulgaris]
            gi|561004473|gb|ESW03467.1| hypothetical protein
            PHAVU_011G016600g [Phaseolus vulgaris]
            gi|561004474|gb|ESW03468.1| hypothetical protein
            PHAVU_011G016600g [Phaseolus vulgaris]
          Length = 924

 Score =  880 bits (2274), Expect(2) = 0.0
 Identities = 483/850 (56%), Positives = 572/850 (67%), Gaps = 24/850 (2%)
 Frame = -3

Query: 2930 PIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVAESFSPKNQKSSLEKG-------- 2775
            PI++KR  +++K+ Q   E +K S   H+G S + +  + S   Q SS++KG        
Sbjct: 53   PIIYKR--LSAKKNQSLSEARKSSSHIHEGQSYRQIPNASSSNGQTSSMQKGNTAPSLKP 110

Query: 2774 ---KXXXXXXXXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREKKPLN-----KSPIE 2619
               K                         KS   ++K+    D + +P +     K   E
Sbjct: 111  SAMKPSVGISRAPNSVGNTSSVKFPVANSKSPSLADKQKMFIDVKVEPKSTVHSGKDFCE 170

Query: 2618 PNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLSVXXXXXXXXXE---IPFSLRFKFKS 2448
             + D +D+KPLS R+          NS H ++  SV             +P S +     
Sbjct: 171  DSEDDEDNKPLSFRL---------KNSNHDNKVTSVVKKSYEDSDGDDDVPLSKKLPRNF 221

Query: 2447 GAGSSSEKFYDSNEEKPFASKIQ---QNGSIKGGNELVKSPKVLNKRTLSDANPSAQCPI 2277
              G+SS   +D +++KP  SKIQ   QNGS  G +     P +L  +   D + S    +
Sbjct: 222  NLGTSSSN-HDDSDKKPI-SKIQKERQNGS--GMSNKQDRPSLLPAKRPLDNSNSLHPSV 277

Query: 2276 KKQKLSDIPVHGKIGQAHVKAEQKIE--DDDDDVPLSQRMXXXXXXXXXXXXXXXXKVFF 2103
            KK K+S      K      K E K+E  DDDDD+P+SQR+                    
Sbjct: 278  KKPKVSGSDASIKTKPGFQKRELKLEDDDDDDDIPISQRIKKQTVSGDKSSSMKKVITKV 337

Query: 2102 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKWSTLEHNGVIFPPPYK 1923
                                              +P S    KKW+TL HNGVIFPPPY+
Sbjct: 338  AKVNKSSSKSFKKQTKKPVKKSGSGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQ 397

Query: 1922 SHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFMNDWRLILGKNHIIKK 1743
             HGVKMLY G+PVDLTPEQEEVATM+AVM+DTEY  K +F +NF +DWR +LG+NH+I+ 
Sbjct: 398  RHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKDNFWSDWRKLLGRNHVIQN 457

Query: 1742 FELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVE 1563
             + C+FTPIY+W+ +EKEKKKQM+T               KYMWAIVDGVKEKVGNFRVE
Sbjct: 458  LKDCDFTPIYDWYQSEKEKKKQMTTDEKKTVKEEKMKQEEKYMWAIVDGVKEKVGNFRVE 517

Query: 1562 PPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQRWKEVKHDNTVTWLAF 1383
            PPGLFRGRGEHPKMGKLK+RI P DITINIGKDAPIPECPIPG+RWKE++HDNTVTWLA+
Sbjct: 518  PPGLFRGRGEHPKMGKLKKRIHPGDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAY 577

Query: 1382 WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRATYTKDFASKDITKRQ 1203
            W+DPINPK FKYVFLAASSSLKGQSDKEKYEKAR+LKDYI +IR+ YTKDF +KDITK Q
Sbjct: 578  WSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRSAYTKDFTNKDITKLQ 637

Query: 1202 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLQFDFLGKDSIRYFNT 1023
            IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV   PPNKL+F+FLGKDSI+Y NT
Sbjct: 638  IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIREPPNKLKFNFLGKDSIKYENT 697

Query: 1022 VEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDE 843
            VEVELPVY AI + +  K  GDDLFDKLDTSKLNAHLKELMPGLTAKVFRT+NASITLD 
Sbjct: 698  VEVELPVYNAILKLQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDN 757

Query: 842  MLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSRLSEKMDELKAVLDEL 663
            MLN+ TKDG+V EKIV+YQHANK+VAIICNHQRSVSKSH AQMS+L+EK+DEL+AVL EL
Sbjct: 758  MLNKGTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMSKLTEKIDELQAVLKEL 817

Query: 662  KTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQTNVKIEKMERDMKTKEDLKTVALG 483
            KTDL RA+KGKPP   +DGK KKNLTPE LEKKI+QTN KIEKM+RDMKTKEDLKTVALG
Sbjct: 818  KTDLDRARKGKPPSKSSDGKTKKNLTPEVLEKKISQTNAKIEKMQRDMKTKEDLKTVALG 877

Query: 482  TSKINYLDPR 453
            TSKINYLDPR
Sbjct: 878  TSKINYLDPR 887



 Score = 46.2 bits (108), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKF WAMDVDP FRF
Sbjct: 903 IFNKSLLAKFCWAMDVDPDFRF 924


>ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|590606147|ref|XP_007020665.1| DNA topoisomerase I
            alpha isoform 1 [Theobroma cacao]
            gi|508720292|gb|EOY12189.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao] gi|508720293|gb|EOY12190.1|
            DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
          Length = 904

 Score =  877 bits (2267), Expect(2) = 0.0
 Identities = 428/516 (82%), Positives = 465/516 (90%), Gaps = 1/516 (0%)
 Frame = -3

Query: 1997 PPSFGEG-KKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEY 1821
            PPS G+G KKWSTL HNGVIFP PY  HGVKMLY+G+PVDLTPEQEEVATMFAVMKDT+Y
Sbjct: 352  PPSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDY 411

Query: 1820 ATKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXX 1641
             +K +F +NF  DW  +LGKNH IK  + C+FTPIYEWHL EKEKKKQMS+         
Sbjct: 412  MSKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEE 471

Query: 1640 XXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDA 1461
                  K+MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDA
Sbjct: 472  KLKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDA 531

Query: 1460 PIPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR 1281
            PIPECPIPG+RWK++KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR
Sbjct: 532  PIPECPIPGERWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR 591

Query: 1280 VLKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 1101
            +LKDYI +IRA YTKDF +KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV
Sbjct: 592  MLKDYIKNIRAAYTKDFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 651

Query: 1100 ENVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLN 921
             NVE +PPNKL+FDFLGKDSI+Y NTVEVELPVYKAIGQF++GKS+ DDLFDKLDTSKLN
Sbjct: 652  GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLN 711

Query: 920  AHLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRS 741
            AHLKELMPGLTAKVFRTYNASITLDEMLN+ETKDG+VAEK+V+YQ ANKEVAIICNHQRS
Sbjct: 712  AHLKELMPGLTAKVFRTYNASITLDEMLNKETKDGDVAEKVVVYQRANKEVAIICNHQRS 771

Query: 740  VSKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKI 561
            +SKSHSAQMSRL+EK+ ELK VL ELK DL RAKKGKPPL DADGK K+NLTP+A++KKI
Sbjct: 772  ISKSHSAQMSRLTEKITELKGVLKELKIDLDRAKKGKPPLKDADGKQKRNLTPQAIQKKI 831

Query: 560  AQTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
             QTN KIEKMERDM+TKEDLKTVALGTSKINYLDPR
Sbjct: 832  DQTNAKIEKMERDMQTKEDLKTVALGTSKINYLDPR 867



 Score = 47.8 bits (112), Expect(2) = 0.0
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAWAMDVDP FRF
Sbjct: 883 IFNKSLLAKFAWAMDVDPDFRF 904



 Score =  138 bits (347), Expect = 2e-29
 Identities = 111/295 (37%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
 Frame = -3

Query: 2930 PIVFKRSNITS-KQKQLNLEIKKPSFQRHDGSSGKHVAESFSPKNQKSSLEKGKXXXXXX 2754
            P+VFKR+N +S KQ QLN E+KK S QR DG SG+ V++  SP  Q S+  K K      
Sbjct: 21   PVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSDVRSPNGQSSNAPKNKSISSSK 80

Query: 2753 XXXXXXXXXXXXXXXXXADKSKHSSEKKL-------------AINDREKKPLN------- 2634
                               K+  SS K L             ++ND+ K+ L        
Sbjct: 81   SPPVKSPILSP--------KASTSSTKALPVKSPVVNFKASTSLNDQSKQALKQNMTTAV 132

Query: 2633 ---KSPI----EPNADSDDDK---PLSARIFA--------ASTSLPRNNSTHVSEGLSVX 2508
               +SPI    EPN+D DDD    PLSAR+          ASTS P  +   V +   V 
Sbjct: 133  KEGRSPIKGTTEPNSDDDDDDDSLPLSARLKGISNQGNKGASTSAPAQSRRLVPK-TEVK 191

Query: 2507 XXXXXXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKV 2328
                    E P S RF  KS  G+SS + +D +E+KP ASKIQQNGSI  G +   S  +
Sbjct: 192  VSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQ-QNSSTL 250

Query: 2327 LNKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRM 2163
              KR L   N S     KK K SD P   K  Q  VKAE K ++DDD +P++QRM
Sbjct: 251  SGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAE-KADEDDDHMPIAQRM 304


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  865 bits (2234), Expect(2) = 0.0
 Identities = 424/515 (82%), Positives = 449/515 (87%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            P S    KKW TL HNGVIFPPPYK HGVKMLY G+PVDLTPEQEEVATMFAVMKDTEY 
Sbjct: 309  PGSSDGQKKWKTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMKDTEYV 368

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
             KP+F++NF NDWR +LGKNH+I+K E C+F PIYEWH  EKEKKKQMST          
Sbjct: 369  QKPQFLQNFWNDWRTLLGKNHVIQKLEACDFNPIYEWHQKEKEKKKQMSTEEKKAVREEK 428

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                  YMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIRPSDITINIGKDAP
Sbjct: 429  LKQEEMYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAP 488

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            IP+CPIPG+RWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR 
Sbjct: 489  IPKCPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARK 548

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LKDYIH+IR  YTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 
Sbjct: 549  LKDYIHNIRTAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVA 608

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NVE +PPNKL+FDFLGKDSIRY NTVEVELPVYKAI QF+  K   DDLFD LDTSKLNA
Sbjct: 609  NVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIRQFQVAKKPTDDLFDSLDTSKLNA 668

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLKELMPGLTAKVFRTYNASITLDE L  ET+DG+VAEK VIY  ANK+VAIICNHQR++
Sbjct: 669  HLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAEKFVIYNQANKQVAIICNHQRTI 728

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH AQMSRL+EK++ELK  L E KTDL RAKKGKPPL DADGK K+NLTPEA+EKKIA
Sbjct: 729  SKSHDAQMSRLTEKLEELKGTLKEFKTDLDRAKKGKPPLKDADGKQKRNLTPEAIEKKIA 788

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
             TN KIEKME  MKTKEDLKTVALGTSKINYLDPR
Sbjct: 789  TTNQKIEKMELSMKTKEDLKTVALGTSKINYLDPR 823



 Score = 46.2 bits (108), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKF WAMDVDP FRF
Sbjct: 839 IFNKSLLAKFTWAMDVDPQFRF 860



 Score = 93.6 bits (231), Expect = 5e-16
 Identities = 89/260 (34%), Positives = 117/260 (45%), Gaps = 4/260 (1%)
 Frame = -3

Query: 2930 PIVFKRS-NITSKQKQLNLEIKKPSFQRHDGSSGKHVAESFSPKNQKSSLEKGKXXXXXX 2754
            PIVFKR  N TSKQ Q NLE KKPS      SS     +S +    KS +          
Sbjct: 23   PIVFKRGGNSTSKQNQPNLEAKKPS-----SSSQNSNGQSLNAHKGKSPISSSNASPVKS 77

Query: 2753 XXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREKKPLNKSPIEPNADSDDDKPLSARI 2574
                                  +S     +I  +E+      PI  + DS+DDKPLS+R 
Sbjct: 78   PIGSPKASASSAKASPMKPPVTYSRVPSSSIAVKEET----KPIVDDDDSEDDKPLSSRF 133

Query: 2573 FAASTSLPRNNSTHVSEGLSVXXXXXXXXXE---IPFSLRFKFKSGAGSSSEKFYDSNEE 2403
                    + ++ + ++G++V         +   +P S RF  KS AGSSS K   S+E+
Sbjct: 134  --------KGSTNNANKGVTVPARVKDEHSDDDEVPLSSRFAAKSNAGSSSCKTISSSEK 185

Query: 2402 KPFASKIQQNGSIKGGNELVKSPKVLNKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAH 2223
                SKIQ NGS    ++  KS  V  KR + +  PS Q   KK KLSD        Q  
Sbjct: 186  ILLVSKIQLNGS-TAKDKQQKSSAVPTKRPMDNKVPSNQSFAKKPKLSDA---STTKQVT 241

Query: 2222 VKAEQKIEDDDDDVPLSQRM 2163
            VKAE K  DDDD + +SQRM
Sbjct: 242  VKAELK-ADDDDHLTISQRM 260


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  862 bits (2228), Expect(2) = 0.0
 Identities = 422/515 (81%), Positives = 457/515 (88%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PPS GEGKKW+TL HNGVIFPPPYK HGVKMLY G+PVDLTPEQEEVATMFAVM DT+Y 
Sbjct: 343  PPSSGEGKKWNTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYM 402

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
            TK +F ENFM+DWR ILGKNH+I+  E C+FTPIYEWH  EKEKKK+M+           
Sbjct: 403  TKSKFKENFMDDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKKMTAEEKKVLKEER 462

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWAIV+GVKEKVGNFRVEPP LFRGRGEHPKMGKLK+ IRPSDITINIGKDAP
Sbjct: 463  LKQEEKYMWAIVNGVKEKVGNFRVEPPSLFRGRGEHPKMGKLKKCIRPSDITINIGKDAP 522

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            IPECPIPG+ WKE++HDNTVTWLAFWNDPI P+EFKYVFLAASSSLKGQSDKEKYEKAR+
Sbjct: 523  IPECPIPGESWKEIRHDNTVTWLAFWNDPIKPREFKYVFLAASSSLKGQSDKEKYEKARL 582

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LKD+I  IRA YTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE
Sbjct: 583  LKDFIQGIRAAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 642

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NVE  PP+ L+FDFLGKDSIRY N VEVELPVYKAI QF++GK  GDDLFDKLDTSKLNA
Sbjct: 643  NVEPKPPSILKFDFLGKDSIRYQNEVEVELPVYKAIQQFRTGKRGGDDLFDKLDTSKLNA 702

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLK LMPGLTAKVFRTYNASITLDEML+RETK G VAEKIV+YQHANKEVAIICNHQR+V
Sbjct: 703  HLKGLMPGLTAKVFRTYNASITLDEMLSRETKGGNVAEKIVVYQHANKEVAIICNHQRTV 762

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH AQM+RL+ K+DELK +LD L+TDL RAKKGKPPL DADGKPK+NLTPEALE+KI 
Sbjct: 763  SKSHPAQMTRLNGKIDELKGILDGLQTDLARAKKGKPPLEDADGKPKRNLTPEALERKIG 822

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            QTN KIEKMERD +TKE LKT+ALGTSKI+YLDPR
Sbjct: 823  QTNAKIEKMERDKETKEGLKTIALGTSKISYLDPR 857



 Score = 47.8 bits (112), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           +FNKSLLAKFAW+MDVDPSFRF
Sbjct: 873 VFNKSLLAKFAWSMDVDPSFRF 894



 Score =  155 bits (393), Expect = 9e-35
 Identities = 115/304 (37%), Positives = 153/304 (50%), Gaps = 28/304 (9%)
 Frame = -3

Query: 2990 MAVDTHITTRHFXXXXXXDEPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVAESF 2811
            MAV   +  +        DEP+VFKRSN TSK  QLN + KK S QR+DG SG+ V++  
Sbjct: 1    MAVQACVKEKMMDEIDEDDEPLVFKRSNATSKHNQLNSDTKKSS-QRYDGQSGRQVSDVP 59

Query: 2810 SPKNQKSSLEKGKXXXXXXXXXXXXXXXXXXXXXXXA------------DKSKHSSEKKL 2667
            S   Q SS  KGK                       +            D+SKHSS++  
Sbjct: 60   STNGQSSSASKGKTTKLSSMKSPIASPKASTSFAKASPVANPKVSSSSDDRSKHSSKQNT 119

Query: 2666 AINDREKKPLNKSPIEPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGL---------- 2517
                +E+K L     EP  DS+D+KPLSAR+F   T L + +S + ++GL          
Sbjct: 120  INVVKEEKELVNPAAEPYGDSEDEKPLSARLF---TGLTKGSSNNANKGLINSSPASLPV 176

Query: 2516 ---SVXXXXXXXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNEL 2346
                +         EIP S +F+ K+ AG+S+ K Y+S++ K   S  QQNGSI  G+  
Sbjct: 177  PKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNGSINRGS-- 234

Query: 2345 VKSPKVLNKRTLSDANPSAQCPIKKQKLSD--IPVHGKIGQAHVKAEQKIEDDDDD-VPL 2175
             KS   +NKR L +   S Q  +KK KLSD   PV+ K  QA  KAE K +D DDD VP+
Sbjct: 235  -KSSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNK--QASKKAEPKADDSDDDHVPI 291

Query: 2174 SQRM 2163
            SQRM
Sbjct: 292  SQRM 295


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  857 bits (2214), Expect(2) = 0.0
 Identities = 420/517 (81%), Positives = 457/517 (88%), Gaps = 2/517 (0%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PPS GEGKKW+ LEHNGVIFPPPYK HG+KMLY G+PVDLTPEQEEVATMFAVM DT+Y 
Sbjct: 357  PPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYM 416

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
             KPRF ENF  DW+ ILGKNH+I+  E C+F+PIYEWH +EKEKKKQM+T          
Sbjct: 417  NKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEKKALKEEK 476

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITINIGKDAP
Sbjct: 477  LKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKDAP 536

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            IPECP+PG+RWKEV+HDNTVTWLAFWNDPINPKEFKYVFLAASS+LKG SDKEKYEKAR+
Sbjct: 537  IPECPVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEKYEKARL 596

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LKDYI  IRA YTKDFASKD TK+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE
Sbjct: 597  LKDYIQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 656

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NVE VPPN L+FDFLGKDSIRY N VEVE  V+KAI QF+SGK    DLFD LDTSKLNA
Sbjct: 657  NVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSSDLFDLLDTSKLNA 716

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLKELMPGLTAKVFRTYNASITLD+ML+RETK G+VAEK+V+YQHANKEVAIICNHQR+V
Sbjct: 717  HLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTV 776

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPL--NDADGKPKKNLTPEALEKK 564
            SKSHSAQM RL+EK++ELKAV++ELK+DL R KKGKPPL   +ADGKPK+NL PE+LEKK
Sbjct: 777  SKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPLKSKNADGKPKRNLNPESLEKK 836

Query: 563  IAQTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            IAQTN KIEKMERD +TKEDLKTVALGTSKINYLDPR
Sbjct: 837  IAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPR 873



 Score = 47.8 bits (112), Expect(2) = 0.0
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKF WAMDVDPSFRF
Sbjct: 889 IFNKSLLAKFTWAMDVDPSFRF 910



 Score =  124 bits (310), Expect = 4e-25
 Identities = 100/295 (33%), Positives = 130/295 (44%), Gaps = 38/295 (12%)
 Frame = -3

Query: 2933 EPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVAESFSPKNQKSSLEKG------- 2775
            EPIVFKR+N  SKQ Q N E +K S Q+ DG S + + +S     + SS +KG       
Sbjct: 20   EPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSRPANGESSSGQKGRMVPPSK 79

Query: 2774 ----KXXXXXXXXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREK-------KPLNK- 2631
                K                          +K S    L  N +         KP N+ 
Sbjct: 80   PSQVKSPLSSPPSKPSQVKSPLSSPKVSTSSAKKSPVSSLPANSKPSTSGSFKVKPFNQH 139

Query: 2630 -----------SP-------IEPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLSVXX 2505
                       SP       I  + DSDD KPLS R  A+S+   + N+  VS+  S   
Sbjct: 140  KSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSASSS---KGNTNQVSKEGSKPE 196

Query: 2504 XXXXXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVL 2325
                   + P S RF  KSG G S+ K YDS+++KP A K+Q NGS     +  K   + 
Sbjct: 197  NEDSDDEK-PLSSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHNGSAMRDGQPNKYSNMS 255

Query: 2324 NKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDD-VPLSQRM 2163
            NKR   D   S Q  +KK KLS +       QA VK E K EDDDDD +P+SQR+
Sbjct: 256  NKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKPEPKAEDDDDDHLPISQRI 310


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  853 bits (2205), Expect(2) = 0.0
 Identities = 475/869 (54%), Positives = 561/869 (64%), Gaps = 43/869 (4%)
 Frame = -3

Query: 2930 PIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVAESFSPK----NQKSSLEKGKXXX 2763
            PI FKR++ ++K         +P+  +H GSSG + A    PK    N + +   G    
Sbjct: 19   PISFKRTSNSTKTA-------RPTPSKHAGSSGGNGAPVRIPKPVSPNPQKNGATGASRP 71

Query: 2762 XXXXXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREKKPLNKSPIEPNADS------- 2604
                                   ++HSS+       + K+PL K     ++D        
Sbjct: 72   LHMKPPSSSPNHRPSGSGQPNSLAQHSSKANSIDMSKLKRPLVKDERSDDSDDEVPIGLR 131

Query: 2603 ----------------------DDDKPLSARIFAASTSLPRNNSTHVSEGL-SVXXXXXX 2493
                                  DDDKPL  +I ++  S  R N   +   +  V      
Sbjct: 132  RKVEEKKLKGVDTRVQKTDDSDDDDKPLGLKINSSRMSSNRVNKPVLQRTVPKVEQPDED 191

Query: 2492 XXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFA---SKIQQNG------SIKGGNELVK 2340
               + P + R    +G  S  +   DS +EKP A   SK+  +G      S KG      
Sbjct: 192  SDDDKPLASRLPSNAGPKSGGDVSEDSEDEKPLAARFSKVAGSGNPKIASSSKGLTSDTN 251

Query: 2339 SPKVLNKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRMX 2160
              + L KR L  +N ++   +KK K S++        A V+ E K    DD+ PL+QR+ 
Sbjct: 252  GQQSLGKRPLDSSNQTSSA-LKKAKPSNVSA-----SAIVRREIKT---DDNTPLAQRLK 302

Query: 2159 XXXXXXXXXXXXXXXKVFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGE 1980
                              F                                  VPP  G 
Sbjct: 303  MGESSKGKSSAKSV----FKKSPVSVKKDIKKMKGKGKLKKNMKNSQFSKIMKVPPGSGG 358

Query: 1979 GKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFI 1800
            GKKW+TLEHNGVIFPPPYK HGVKMLYNG+PVDLTPEQEEVATMFAVMKDT+YA KP FI
Sbjct: 359  GKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPVDLTPEQEEVATMFAVMKDTDYAAKPTFI 418

Query: 1799 ENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXK 1620
            +NF  DWR +LGKNHIIK FELC+FTPIYEWHL EKE+KKQM+T               K
Sbjct: 419  DNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDNLKQEEK 478

Query: 1619 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPI 1440
            YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI PSDITINIGK AP+PECPI
Sbjct: 479  YMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPI 538

Query: 1439 PGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIH 1260
            PG+ WKEVKHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R LK +I 
Sbjct: 539  PGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQ 598

Query: 1259 DIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVP 1080
             IR  YTKDF +KD+T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+NV  +P
Sbjct: 599  RIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMP 658

Query: 1079 PNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELM 900
            PN++QFDFLGKDSIRYFNTVEVE  VYKAI  F++GK  G DLFDK+DTS+LNAHLK+LM
Sbjct: 659  PNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLM 718

Query: 899  PGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSA 720
            PGLTAKVFRTYNASITLD +L+ ET+DG V EKI +YQ ANKEVAIICN QRSVSKSH +
Sbjct: 719  PGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAIICNQQRSVSKSHES 778

Query: 719  QMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQTNVKI 540
            QM+R++EK+DELK+ ++ELK DL +AKKGKP   D++GKPK+NL PEA++KK+A    KI
Sbjct: 779  QMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKI 838

Query: 539  EKMERDMKTKEDLKTVALGTSKINYLDPR 453
            EKME D + KEDLKTVALGTSKINYLDPR
Sbjct: 839  EKMEMDKRIKEDLKTVALGTSKINYLDPR 867



 Score = 46.2 bits (108), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKF WAMDVDP FRF
Sbjct: 883 IFNKSLLAKFVWAMDVDPEFRF 904


>ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
            gi|449503189|ref|XP_004161878.1| PREDICTED: DNA
            topoisomerase 1-like [Cucumis sativus]
          Length = 889

 Score =  851 bits (2199), Expect(2) = 0.0
 Identities = 419/515 (81%), Positives = 459/515 (89%), Gaps = 1/515 (0%)
 Frame = -3

Query: 1994 PSFGEG-KKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PS G+G KKW+TL HNGVIFPPPY++HGVKMLY G+PVDLTP QEEVATMFAVMKDT+Y 
Sbjct: 338  PSAGDGQKKWTTLVHNGVIFPPPYQTHGVKMLYKGKPVDLTPPQEEVATMFAVMKDTDYM 397

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
             KP+F ENF NDWR +LGKNH+I+  + C+FTPIY+W+  EKEKKKQM+T          
Sbjct: 398  LKPKFKENFWNDWRKLLGKNHVIQNLDDCDFTPIYDWYQMEKEKKKQMTTEEKKAVKEEK 457

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWAI+DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI PSDITINIGK AP
Sbjct: 458  LKQEEKYMWAILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPSDITINIGKGAP 517

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            IPECPIPG+RWKEV+HDNTVTWLAFWNDPIN KEFKYVFLAASSSLKGQSDKEKYEKAR+
Sbjct: 518  IPECPIPGERWKEVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARM 577

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LKDYI +IR  YTKDF SKD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE
Sbjct: 578  LKDYIKNIRNAYTKDFTSKDPTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 637

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NV+ VPPN L+F+FLGKDSIRY NTVEVELPV+KAI QF+SGKS  DDLFDKLDTSKLNA
Sbjct: 638  NVKAVPPNLLEFNFLGKDSIRYENTVEVELPVFKAITQFQSGKSGTDDLFDKLDTSKLNA 697

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLK+LMPGLTAKVFRTYNASITLD+MLNR TK+GEV+EKIV YQHANKEVAIICNHQR+V
Sbjct: 698  HLKDLMPGLTAKVFRTYNASITLDDMLNRGTKNGEVSEKIVTYQHANKEVAIICNHQRTV 757

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH AQM+RL+EK+ EL+ +L ELK DL RAKKGKPPL  +DGK K+NLTPEALEKKI+
Sbjct: 758  SKSHGAQMTRLNEKISELRDILKELKIDLDRAKKGKPPLKGSDGKQKRNLTPEALEKKIS 817

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            QTN KIEK+ERDMKTKEDLKTVALGTSKINYLDPR
Sbjct: 818  QTNAKIEKIERDMKTKEDLKTVALGTSKINYLDPR 852



 Score = 47.8 bits (112), Expect(2) = 0.0
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAWAMDVDP FRF
Sbjct: 868 IFNKSLLAKFAWAMDVDPDFRF 889



 Score =  101 bits (252), Expect = 2e-18
 Identities = 89/295 (30%), Positives = 138/295 (46%), Gaps = 19/295 (6%)
 Frame = -3

Query: 2990 MAVDTHITTRHFXXXXXXDEPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVAESF 2811
            MAV+T      F      + PIVFKR++  S+Q QL+ EIK    QR     G+  ++  
Sbjct: 1    MAVETFGKAPMFDDDDEDNMPIVFKRTS-ASRQNQLDSEIKHSQAQRLSKLPGRQGSDLC 59

Query: 2810 SPKNQKSSLEKGKXXXXXXXXXXXXXXXXXXXXXXXAD-----------KSKHS--SEKK 2670
            S   Q S+ +K                                      K+ HS  S  K
Sbjct: 60   STNGQSSNNQKRMTSLPKTSPMRSEIGSQKASRSSPIPEPLTKSLGTSLKASHSMDSRPK 119

Query: 2669 LAINDREKKP-LNKSPIEPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLSVXXXXXX 2493
              +N   K+  ++ +P + N+DS+DDKPLS R+   + + P            V      
Sbjct: 120  SLVNAVVKEENVSINPSQENSDSEDDKPLSIRL-KGNPNQPNKGLVSTVPKNKVKKSLAD 178

Query: 2492 XXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKVLN-KR 2316
               E+P S +F+ K  +G    K +  +E+KP   K+ QNGS     + ++ P VL+ KR
Sbjct: 179  SDDEVPLSSKFQMKHASGVLGSKQHGFDEKKPLVPKVHQNGSTS--RDKLQKPAVLSSKR 236

Query: 2315 TL--SDANPSAQCPIKKQKLSDI--PVHGKIGQAHVKAEQKIEDDDDDVPLSQRM 2163
             L   D++  +Q P KK KL+D   P++ K+    +KA+Q+++DDDDD+P+SQRM
Sbjct: 237  PLPNEDSHSPSQFPTKKPKLTDSSSPLNSKL--VSLKAKQEVDDDDDDIPISQRM 289


>gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]
          Length = 947

 Score =  857 bits (2213), Expect(2) = 0.0
 Identities = 454/745 (60%), Positives = 528/745 (70%), Gaps = 5/745 (0%)
 Frame = -3

Query: 2672 KLAINDREKKPLNKSP----IEPNADSDDDKPLSARIFAASTSLPRNN-STHVSEGLSVX 2508
            K A N+   KP+   P    ++ + DS+D+KPL++R+   + + P++  ST  SE     
Sbjct: 204  KGASNNSTSKPVLLKPAPKIVQSDDDSEDEKPLASRL--PTNAAPKSRGSTSDSEDEK-- 259

Query: 2507 XXXXXXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKV 2328
                      P S RF    G   +S    +S ++ P  +K   N S    N  VK P  
Sbjct: 260  ----------PLSARFS--RGTAGTSASISNSKDKLPSNNKGPTNNSSAPRNS-VKRPGY 306

Query: 2327 LNKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRMXXXXX 2148
             N +T S         +KK K SD    G + +      +  +DD + VP+ +++     
Sbjct: 307  NNNQTSS--------ALKKTKSSDASASGSVKR------ESTDDDSNSVPVERKLTPGES 352

Query: 2147 XXXXXXXXXXXKVFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPSFGEGKKW 1968
                           +                                 VPP  G GKKW
Sbjct: 353  SKSKPPVK-------NIVKSPLSVKKDNKKFKTKTKKTMKSSQFSKSLRVPPGSGGGKKW 405

Query: 1967 STLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKPRFIENFM 1788
            STLEHNGVIFPPPY  HGVKMLYNGQPV+LTPE+EEVATMFAVMKDTEYATK  FI+NF 
Sbjct: 406  STLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEEEVATMFAVMKDTEYATKKTFIDNFF 465

Query: 1787 NDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXXXXXXKYMWA 1608
             DW+ ILGKNHIIKKFELC+FTPIYEWHL EKEKKKQM++               KYMWA
Sbjct: 466  GDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALREEKLKQEEKYMWA 525

Query: 1607 IVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGQR 1428
            +VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGK  P+PECPI GQ 
Sbjct: 526  VVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGTPVPECPIEGQS 585

Query: 1427 WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVLKDYIHDIRA 1248
            WKEVKHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LKD+IH+IR 
Sbjct: 586  WKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHIHNIRV 645

Query: 1247 TYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKL 1068
             YTKDF SKD++K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+NV  VPPNKL
Sbjct: 646  NYTKDFNSKDVSKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCVPPNKL 705

Query: 1067 QFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAHLKELMPGLT 888
            QFDFLGKDSIRYFNTVEVELPVY AI +F++GK +GD +FD+LDT+KLN HLK+LMPGLT
Sbjct: 706  QFDFLGKDSIRYFNTVEVELPVYNAIEEFRTGKKDGDAVFDQLDTTKLNHHLKDLMPGLT 765

Query: 887  AKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVSKSHSAQMSR 708
            AKVFRTYNASITLD +L+ ET+DG + EKI +YQ ANKEVAIICNHQR+VSKSH  QM++
Sbjct: 766  AKVFRTYNASITLDAILHEETEDGTLLEKIAVYQRANKEVAIICNHQRAVSKSHDTQMTK 825

Query: 707  LSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQTNVKIEKME 528
            L+EK+DELKA +DEL  DL + K+GKP  N ADGKPK+ L PEA+EKKI+Q   KIEKME
Sbjct: 826  LNEKIDELKAQVDELNKDLGKVKRGKPLGNGADGKPKRTLAPEAIEKKISQIETKIEKME 885

Query: 527  RDMKTKEDLKTVALGTSKINYLDPR 453
             D KTKEDLKTVALGTSKINYLDPR
Sbjct: 886  MDKKTKEDLKTVALGTSKINYLDPR 910



 Score = 40.8 bits (94), Expect(2) = 0.0
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IF+K++LAKF WAMDV+P FRF
Sbjct: 926 IFSKTILAKFGWAMDVEPDFRF 947


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  846 bits (2185), Expect(2) = 0.0
 Identities = 411/515 (79%), Positives = 451/515 (87%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PP  G G+KW+TL HNGVIFPPPYK HGVKMLYNGQPVDLTPEQEEVATMF+VMKDT+YA
Sbjct: 360  PPGSGGGQKWTTLVHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFSVMKDTDYA 419

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
            +K  FI+NF  DWR ILGKNHIIKKFELC+FTPIYEWHL EKEKKKQM++          
Sbjct: 420  SKQTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKAVKEEK 479

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI+PSDITINIGK AP
Sbjct: 480  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAP 539

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            IPECPIPG+ WKEVKHDNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R 
Sbjct: 540  IPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRK 599

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LK +IH IR TYTKDF SKD TK+QIAVATYLIDKLALRAGNEKDDDEA+TVGCCTLKV+
Sbjct: 600  LKHHIHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDDDEAETVGCCTLKVD 659

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NV  VPPN LQFDFLGKDSIRYFNTVEVELPVYKAI +F++GK  GDDLFDKLDT++LNA
Sbjct: 660  NVTCVPPNNLQFDFLGKDSIRYFNTVEVELPVYKAIEEFRAGKKPGDDLFDKLDTTRLNA 719

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLK+LMPGLTAKVFRTYNASITLD++L++ET+DG + EKI +YQ ANKEVAIICNHQRSV
Sbjct: 720  HLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSV 779

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH +QM+RL+EK+DELKA  DELK DL + KKGK    D DGKPK+NL PEA EKKI+
Sbjct: 780  SKSHDSQMTRLNEKIDELKAQRDELKADLSKVKKGKSLGYDKDGKPKRNLAPEAFEKKIS 839

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            Q   KIEKME D K KEDLKTVALGTSKINYLDPR
Sbjct: 840  QVETKIEKMEMDKKIKEDLKTVALGTSKINYLDPR 874



 Score = 45.8 bits (107), Expect(2) = 0.0
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSL+AKF+WAMDVDP FRF
Sbjct: 890 IFNKSLIAKFSWAMDVDPDFRF 911


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  843 bits (2179), Expect(2) = 0.0
 Identities = 408/515 (79%), Positives = 451/515 (87%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PP  G GKKW+TLEHNGVIFPPPYK HGVKMLYNGQPVDLTPEQEEVATMFAVMKDT+YA
Sbjct: 352  PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYA 411

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
             KP FIENF  DWR +LGKNH+IKKFELC+FTPIYEWHL EKEKKKQM+T          
Sbjct: 412  GKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEK 471

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI+PSDITINIG+DAP
Sbjct: 472  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAP 531

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            +PECPIPG+RWKEVKHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 532  VPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRK 591

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LK YI DIR  YTKDF SKD+ KRQIAVATYLIDKLALRAGNEKD+DEADTVGCCTLKV+
Sbjct: 592  LKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKDEDEADTVGCCTLKVD 651

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NV  +PPNK+QFDFLGKDSIRYFNTVEVE  VYKAI  F++GK  G DLFD+LDT++LNA
Sbjct: 652  NVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGKDLFDQLDTTRLNA 711

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLK+LMPGLTAKVFRTYNASITLD +L++ET+DG + EKI +YQ ANKEVAIICNHQRSV
Sbjct: 712  HLKDLMPGLTAKVFRTYNASITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSV 771

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH +QM+RL+E++D+LKA  DELK DL +AKKGKP   D +GK K+NL P+A+EKKIA
Sbjct: 772  SKSHESQMTRLNERIDDLKAQRDELKVDLSKAKKGKPLGYDKEGKQKRNLAPDAIEKKIA 831

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
                KIEKME + KTKEDLKTVALGTSKINYLDPR
Sbjct: 832  AIETKIEKMEMEKKTKEDLKTVALGTSKINYLDPR 866



 Score = 45.1 bits (105), Expect(2) = 0.0
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSL+AKF WAMDVDP FRF
Sbjct: 882 IFNKSLVAKFGWAMDVDPEFRF 903



 Score = 60.1 bits (144), Expect = 6e-06
 Identities = 78/300 (26%), Positives = 118/300 (39%), Gaps = 44/300 (14%)
 Frame = -3

Query: 2930 PIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSG---------KHVAESFSPKNQKSSLEK 2778
            PI FKRS+ + K         +P+  + +GSSG         KHVA    P  QK+ +  
Sbjct: 20   PISFKRSSNSVKSS-------RPTPSKQEGSSGGAGVPVRSQKHVA----PNQQKNGVSA 68

Query: 2777 GKXXXXXXXXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREKKPLNKS---------- 2628
                                        + HSS+       + K+PL K           
Sbjct: 69   SVSRPMHMKPPPSSPNQRPSGSGQPNSSAAHSSKSNSNDKSKLKRPLVKEENSDDSDDDV 128

Query: 2627 PI---------------EPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGLS-VXXXXX 2496
            PI               E   DSDDDKPLS +I ++  S    +   + + ++ V     
Sbjct: 129  PIGLRKKVEEKKLKRVDEKADDSDDDKPLSLKINSSKMSSNCASRPVLQKAVAKVEQPDE 188

Query: 2495 XXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFA---SKIQQNGSI------KGGNELV 2343
                + P + R    +   S      DS +EKP A   SK+  +G++      KG N   
Sbjct: 189  DSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDS 248

Query: 2342 KSPKVLNKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAHVKAEQKIEDDDDDVPLSQRM 2163
              P+ L KR L ++N ++   +KK K S++        A VK E K  DD+D+ PL+QR+
Sbjct: 249  NGPRNLGKRPLDNSNQTS-LALKKAKPSNVS-----ASASVKREIK-ADDNDNTPLAQRL 301


>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
            tuberosum]
          Length = 905

 Score =  843 bits (2179), Expect(2) = 0.0
 Identities = 411/514 (79%), Positives = 451/514 (87%)
 Frame = -3

Query: 1994 PSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYAT 1815
            PS G+G+KW+TLEHNGVIFPPPYK HGVKMLY G+PVDLTPEQEEVATM+AVM DTEY T
Sbjct: 355  PSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYLT 414

Query: 1814 KPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXXX 1635
            K +F ENFMNDWR ILGKNH+I+K E CNFTPIYEWH +EKEKKKQMS+           
Sbjct: 415  KQQFKENFMNDWRKILGKNHVIQKLEECNFTPIYEWHQSEKEKKKQMSSEEKKALREEKL 474

Query: 1634 XXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPI 1455
                KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRP+DITINIGK  P+
Sbjct: 475  KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPV 534

Query: 1454 PECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARVL 1275
            PECPIPGQRWKEV+HDNTVTWLAFWNDPINP+EFKYVFLAASSSLKGQSDKEKYEKAR L
Sbjct: 535  PECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRL 594

Query: 1274 KDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN 1095
            KDYI  IR+ YTKDF SKD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN
Sbjct: 595  KDYIEGIRSAYTKDFTSKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN 654

Query: 1094 VELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNAH 915
            VE VPPN L+FDFLGKDSIRY N V V  PV+KAI QF+SGK  GDDLFDKLDTSKLNAH
Sbjct: 655  VEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGGDDLFDKLDTSKLNAH 714

Query: 914  LKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSVS 735
            LKELMPGLTAKVFRTYNAS TL++ L + T+ GE+A+K+ +Y  ANKEVAIICNHQR+VS
Sbjct: 715  LKELMPGLTAKVFRTYNASFTLEQQLTKLTQGGELADKVAVYNVANKEVAIICNHQRTVS 774

Query: 734  KSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIAQ 555
            KSHS Q+SRL+EK+DELKA+L+E K DL RAKKGKPP+  ADGK K+NLTPEAL+KKI Q
Sbjct: 775  KSHSVQISRLNEKIDELKAILEEFKVDLARAKKGKPPVKGADGKAKRNLTPEALQKKIDQ 834

Query: 554  TNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            TNVKI+ +ER ++TKE+LKTVALGTSKINYLDPR
Sbjct: 835  TNVKIDNIERQIETKEELKTVALGTSKINYLDPR 868



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           +FNKSLLAKFAWAMDV+PSF F
Sbjct: 884 MFNKSLLAKFAWAMDVEPSFTF 905



 Score = 80.1 bits (196), Expect = 6e-12
 Identities = 67/178 (37%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
 Frame = -3

Query: 2663 INDREKKPLNKSPIEPN---ADSDDDKPLSARI---FAASTSLPRNN--STHVSEGLSVX 2508
            I  +E K   +   EPN    DS+DDKPLSAR+    + S S+  NN   T  S   S  
Sbjct: 144  IAPKESKQAIEPKSEPNDEAEDSEDDKPLSARVPSGLSKSNSIHANNVLGTSTSVQKSRP 203

Query: 2507 XXXXXXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPFASKIQQNGSIKGGNELVKSPKV 2328
                    EIP + RF+ KS AG+S+ KF  S E KP   KI+QNG        + S  V
Sbjct: 204  PKKEDSDDEIPLASRFQMKSSAGASTSKFSSSEEVKP---KIRQNG--------LPSATV 252

Query: 2327 LNKRTLSDANPSAQCPIKKQKLSDIPVHGK---IGQAHVKAEQKIEDDDDDVPLSQRM 2163
            L+KR   + +   +  +K     D  +H     +    VK E+K EDDDD+VPLSQR+
Sbjct: 253  LSKRPPGEVSLLLRLQLKSL---DFLMHLHLFLVSNXSVKTEKKTEDDDDEVPLSQRI 307


>ref|XP_007201211.1| hypothetical protein PRUPE_ppa001622mg [Prunus persica]
            gi|462396611|gb|EMJ02410.1| hypothetical protein
            PRUPE_ppa001622mg [Prunus persica]
          Length = 790

 Score =  841 bits (2172), Expect(2) = 0.0
 Identities = 408/516 (79%), Positives = 457/516 (88%), Gaps = 1/516 (0%)
 Frame = -3

Query: 1997 PPSFGEG-KKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEY 1821
            PPS  +G KKW++L HNGVIFPPPYK HGVKMLY+G+PV L+PEQEEVATM+AVMKDT+Y
Sbjct: 238  PPSSNDGQKKWTSLVHNGVIFPPPYKPHGVKMLYSGKPVTLSPEQEEVATMYAVMKDTDY 297

Query: 1820 ATKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXX 1641
              K  F  NF NDW  +LGKNHII+K + C+FTPIY+W+ NEKEKKKQMST         
Sbjct: 298  VQKQTFRNNFWNDWHKLLGKNHIIQKLDACDFTPIYDWYQNEKEKKKQMSTEEKKALKED 357

Query: 1640 XXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDA 1461
                  KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPK GKLKRRIRPSD+TINIGKDA
Sbjct: 358  KLKEEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKSGKLKRRIRPSDVTINIGKDA 417

Query: 1460 PIPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR 1281
            PIPECPIPG+ WKEV+HDNTVTWLAFWNDPIN +EFKYVFLA SSSLKGQSDKEKYEKAR
Sbjct: 418  PIPECPIPGESWKEVRHDNTVTWLAFWNDPINQREFKYVFLAPSSSLKGQSDKEKYEKAR 477

Query: 1280 VLKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 1101
            +LKDYI +IRA YT+DF SKD TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV
Sbjct: 478  MLKDYIGNIRAAYTRDFTSKDGTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 537

Query: 1100 ENVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLN 921
            ENV+ + PN L+F+FLGKDSIRY NTVEVE+PVYKAI QF++GK   DDLFD+LDTSKLN
Sbjct: 538  ENVKAIAPNSLEFNFLGKDSIRYENTVEVEIPVYKAIIQFQTGKRGCDDLFDRLDTSKLN 597

Query: 920  AHLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRS 741
            AHLKELMPGLTAKVFRTYNASITLD +LN+ETK+G+++EK+V+YQHANKEVAIICNHQR+
Sbjct: 598  AHLKELMPGLTAKVFRTYNASITLDNILNKETKEGDLSEKVVVYQHANKEVAIICNHQRT 657

Query: 740  VSKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKI 561
            +SK+HSAQMSRL EK+  L+++L ELKTDL RAKKG+PPL DADGK K+NLTPEALE+KI
Sbjct: 658  ISKTHSAQMSRLLEKIGNLQSILKELKTDLDRAKKGRPPLKDADGKQKRNLTPEALERKI 717

Query: 560  AQTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            AQT VKIEKME DM+TKEDLKTVALGTSKINYLDPR
Sbjct: 718  AQTTVKIEKMELDMRTKEDLKTVALGTSKINYLDPR 753



 Score = 46.6 bits (109), Expect(2) = 0.0
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSLLAKFAW+MDVDP FRF
Sbjct: 769 IFNKSLLAKFAWSMDVDPDFRF 790



 Score = 74.7 bits (182), Expect = 3e-10
 Identities = 76/260 (29%), Positives = 105/260 (40%), Gaps = 3/260 (1%)
 Frame = -3

Query: 2933 EPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVAESFSPKNQKSSLEKGKXXXXXX 2754
            +P+VFKRSN  SKQ QL+ ++K+   Q           +S + K + +S+E         
Sbjct: 18   KPLVFKRSNAKSKQNQLDGQLKQLPVQN----------KSTTIKEESNSIE--------- 58

Query: 2753 XXXXXXXXXXXXXXXXXADKSKHSSEKKLAINDREKKPLNKSPIEPNADSDDDKPLSARI 2574
                                  H +E+    +  + KP+     +P  DSDDDKPLS+RI
Sbjct: 59   ----------------------HPAEENS--DSEDAKPIKARLGKPCEDSDDDKPLSSRI 94

Query: 2573 FAASTSLPRNNSTHVSEGLSVXXXXXXXXXEIPFSLRFKFKSGAGSSSEKFYDSNEEKPF 2394
                   P+                                   G+S  +  DS E KP 
Sbjct: 95   ------TPKK---------------------------------VGTSGSQPCDSKERKPV 115

Query: 2393 ASKIQQNGSI---KGGNELVKSPKVLNKRTLSDANPSAQCPIKKQKLSDIPVHGKIGQAH 2223
            ASK+Q+N S    KG    V S     KR L  AN S +   K+ K+SD     K  Q  
Sbjct: 116  ASKVQKNCSSTTDKGKTSYVIS----TKRPLDKANISEKSSAKRPKVSDSSTSIKNMQVS 171

Query: 2222 VKAEQKIEDDDDDVPLSQRM 2163
             K E K EDDDD +P+SQR+
Sbjct: 172  AKKEPKGEDDDDFIPISQRI 191


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  840 bits (2171), Expect(2) = 0.0
 Identities = 408/515 (79%), Positives = 451/515 (87%)
 Frame = -3

Query: 1997 PPSFGEGKKWSTLEHNGVIFPPPYKSHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYA 1818
            PP  G G+KW+TL H+GVIFPPPYK HGVKMLYNGQPVDLTPEQEEVATMFAVMKDT+YA
Sbjct: 365  PPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYA 424

Query: 1817 TKPRFIENFMNDWRLILGKNHIIKKFELCNFTPIYEWHLNEKEKKKQMSTXXXXXXXXXX 1638
            +K  FI+NF  DWR ILGKNH+IKKFELC+FTPIYEWHL EKEKKKQM++          
Sbjct: 425  SKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEK 484

Query: 1637 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAP 1458
                 KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRI+PSDITINIGK AP
Sbjct: 485  LKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAP 544

Query: 1457 IPECPIPGQRWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARV 1278
            IPECPIPG+ WKEVKHDNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R 
Sbjct: 545  IPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRK 604

Query: 1277 LKDYIHDIRATYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1098
            LK ++H IR TYTKDF SKD TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+
Sbjct: 605  LKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVD 664

Query: 1097 NVELVPPNKLQFDFLGKDSIRYFNTVEVELPVYKAIGQFKSGKSEGDDLFDKLDTSKLNA 918
            NV  VPPNKLQFDFLGKDSIRYFNTVEVEL VYKAI +F++GK  G DLFDKLDT++LNA
Sbjct: 665  NVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNA 724

Query: 917  HLKELMPGLTAKVFRTYNASITLDEMLNRETKDGEVAEKIVIYQHANKEVAIICNHQRSV 738
            HLK+LMPGLTAKVFRTYNASITLD++L++ET+DG + EKI +YQ ANKEVAIICNHQRSV
Sbjct: 725  HLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSV 784

Query: 737  SKSHSAQMSRLSEKMDELKAVLDELKTDLVRAKKGKPPLNDADGKPKKNLTPEALEKKIA 558
            SKSH +QM+RL+EK+DELKA  DELK DL + +KGK   ND DGKPK+NL PEA EKKI+
Sbjct: 785  SKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKIS 844

Query: 557  QTNVKIEKMERDMKTKEDLKTVALGTSKINYLDPR 453
            Q   KIEKME D K KEDLKTVALGTSKINYLDPR
Sbjct: 845  QIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPR 879



 Score = 45.8 bits (107), Expect(2) = 0.0
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -2

Query: 432 IFNKSLLAKFAWAMDVDPSFRF 367
           IFNKSL+AKF+WAMDVDP FRF
Sbjct: 895 IFNKSLIAKFSWAMDVDPDFRF 916