BLASTX nr result
ID: Akebia25_contig00003199
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00003199
(3745 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1561 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1528 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1527 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1522 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1493 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1489 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1484 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1482 0.0
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 1458 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1452 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 1446 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1442 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 1426 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1422 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1422 0.0
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 1412 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 1411 0.0
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 1408 0.0
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 1406 0.0
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1405 0.0
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1561 bits (4042), Expect = 0.0
Identities = 780/1143 (68%), Positives = 919/1143 (80%), Gaps = 4/1143 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP+ V+AE VK FLE+ TG GTVYALKLR PK + R +A+VQFT+ E+
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK--KGVGRLYAIVQFTTKEA 58
Query: 364 AEQISSLI--NQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSL 537
A+ I SL ++L+YG SYL M++D VP+PRT M ++E LHFGC+IS EKF+ L
Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118
Query: 538 WKGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVS 717
W+G++ +N GFG+RK+ FLL+H EY+L+L Y++IW+I+L PR ++ TK+LLIQ+
Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--TKYLLIQLL 176
Query: 718 TAPRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCK 897
APRIF+K + S +Y P FN+F++ PDDQWVR TDFT S+ IGQS+ +C+EL Y +
Sbjct: 177 GAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236
Query: 898 LPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNG 1077
LP +ENF YKE E RF+LE+GS +S +DLVPIV PP G LPY+ILFKIN LVQNG
Sbjct: 237 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP-DGIALPYEILFKINLLVQNG 295
Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHH--IERALEKLSHSKDSCYEPVKWLREQYTKYLTSKH 1251
++GP LDS F+RLV P PV IE AL+KL H K+ CYEP +WL +QY KY+TS+
Sbjct: 296 CVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRS 355
Query: 1252 TPRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDW 1431
P S ISLDDGLVYV RVQVTPS+VYFCGPE+NVSNRV+RH+R IDNF+R+SF+DED
Sbjct: 356 KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415
Query: 1432 EKMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMF 1611
+K+ STDLSPR + D T +Y RILSTL+NGI+IG++KFE LAFSSSQLR++S WMF
Sbjct: 416 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475
Query: 1612 APWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIER 1791
A G+TAA IREWMGNFR+IRNVAKYAAR GQSFSSS ETL+V EI+ IPDVKIE
Sbjct: 476 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEI 534
Query: 1792 DGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLR 1971
T+YVFSDGIGK+S+EFAR+VA KCG+K + PSAFQIRYGGYKGVVA DPTS KKLSLR
Sbjct: 535 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 594
Query: 1972 KSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILT 2151
SM KY SE T LDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV QLD ILT
Sbjct: 595 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 654
Query: 2152 DPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFE 2331
DPL+AQEALE+MSPGEN N+LKE+L CGYKPDAEPFLSMMLQTFRASKLLELR KTRIF
Sbjct: 655 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 714
Query: 2332 PNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVA 2511
PNGRSMMGCLDETRTL YGQVFVQ+S AG+RQ H + ++ I+ G V+VA
Sbjct: 715 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS--RQRFIVQGLVVVA 772
Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691
KNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL
Sbjct: 773 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 832
Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871
IP +Q PMDYTPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIANAHT FAD+EP KA
Sbjct: 833 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKAR 892
Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051
S C++LA FSIAVDFPKTGVPAEIP HL+VKE+PDFMEK DKPTYES VIGKLFR V
Sbjct: 893 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 952
Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231
KDIAP SCI+ FTKEVAR SYD DMEVDGFED+ID+A Y+KG YD+KLGNLMDYYGIKT
Sbjct: 953 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 1012
Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411
E+EIL+GSIMK S+ F +R+DA+AIG AVRAL+KEAR WF K+G++ DD YAKAS
Sbjct: 1013 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE---DDAYAKAS 1069
Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591
AWYHVTYH YWGCYN G++RDHFLSFPWCVY++L+ IK+DK S + +LE QFR G
Sbjct: 1070 AWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAF-PALEQQFRQG 1128
Query: 3592 LRL 3600
LR+
Sbjct: 1129 LRM 1131
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1528 bits (3957), Expect = 0.0
Identities = 774/1140 (67%), Positives = 907/1140 (79%), Gaps = 1/1140 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
M +TIQV GFPS VSA+ +K FLE YTGEGT+ AL+++QP++ S + A VQFTS E
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I +L ++++YG +YLK EM DI+PKPR + S++ LHFGCQ+S+E+F LWK
Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
++ + G GLRK F L+H EYKL+LSY++IWQIQL+HPR ++ TKFLLIQ+ A
Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQI--TKFLLIQLLGA 176
Query: 724 PRIFEKPLCSSGDIYGDPAFNY-FRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
P+I+EK + P +Y F++ PDDQWVR DFT S IGQS A+CLEL Y +L
Sbjct: 177 PQIYEKDV---------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL 227
Query: 901 PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080
P RENF YKE++G+F+LESGS++SH + LVPI+ PP QG LP+ ILFKIN+LVQNG
Sbjct: 228 PNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPP-QGSSLPFQILFKINTLVQNGC 286
Query: 1081 LSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260
LSGPTLD++FFRLV P P+ IE ALEKL H K+ CYEPV+WL EQY Y+ K
Sbjct: 287 LSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAG 345
Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440
S ISLD GLVYVRRVQ+TP KVYFCGPEVNVSNRV+R+Y IDNF+RVSF+DE+ EK+
Sbjct: 346 SPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKI 405
Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620
ST +SPR+ +++ + T +Y+RILS L+NGI+IG+KKF+ LAFSSSQLRDNS WMFA
Sbjct: 406 HSTVISPRM--SKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463
Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800
G+TAA IR WMG+F IRNVAKYAAR GQSFSSS ETL V + EI+ IPD++I + T
Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEIHKGRT 522
Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980
YVFSDGIGKIS + A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM
Sbjct: 523 TYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSM 582
Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160
KY S+NT+LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+
Sbjct: 583 FKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPV 642
Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340
AQEALE+MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNG
Sbjct: 643 AAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNG 702
Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
RSMMGCLDETRTLEYG+VFVQ+S G RQ + R + I+ GK++VAKNP
Sbjct: 703 RSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNP 761
Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
CLHPGDVRVL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP
Sbjct: 762 CLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPP 821
Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
+Q+ PMDYTPA + +LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE KA +
Sbjct: 822 QQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDP 881
Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
C ELA LFSIAVDFPKTGVPAEIP +L VKE+PDFMEK DKPTYES VIGKLFREVKDI
Sbjct: 882 CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDI 941
Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
AP I+SFT++VAR SYD DMEV GFEDY+ +AFYYK EYD+KLGNLMDYYGIKTESE
Sbjct: 942 APHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESE 1001
Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420
ILSGSIM+ S+ FDRRKDA+AIG AV++L+KEARTWF+ K G+E S+ DD+YAKASAWY
Sbjct: 1002 ILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDSEADDVYAKASAWY 1060
Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600
HVTYH YWGCYN+G+DRDHFLSFPWCVY+KLI+ KR K S + SLE + GLRL
Sbjct: 1061 HVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1527 bits (3954), Expect = 0.0
Identities = 765/1142 (66%), Positives = 909/1142 (79%), Gaps = 2/1142 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
M +T++VSGFPSS +A V+VFLE++TG GTV ALK+R+ +T R +A+VQFT+ +
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRT--GGARKYAIVQFTTTRA 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AEQI SL N RL+YG SYL M RDI+P+PR+ + ++E LHFG Q S+EKFS++W
Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
G + +N G G+RKL F L+H EYKL+L +++IWQI+L PR + + K+LLIQ+ A
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQ--TVKYLLIQLYGA 176
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+E+ + SS +++ DP NYFRD PD+QWVR TDFT S IG SS++CLEL + +LP
Sbjct: 177 PRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP 236
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
ENF YKE+EG F+LESG TFS DLVPIV P G LPY+ILF++N LVQNG L
Sbjct: 237 NFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPS-SGVNLPYNILFRVNLLVQNGCL 295
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
+G LD F+RLV P+ +PV IE ALEKL H K+ CYEP KW EQY KYLTS + PRS
Sbjct: 296 AGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRS 355
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
+SLD GLVYV +VQ+TP KV+FCGPEVNVSNRV+R YR IDNF+RVSFVDE+ EK+
Sbjct: 356 PVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIH 415
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
STD+SPR + + + T +Y RILSTL+NGI+IG+KKFE LAFSSSQLR+NS WMFA
Sbjct: 416 STDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRL 475
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
G+TAA IR WMG+F IRNVA+YAAR GQSF SS ETL+V HEI+ IPD+++ R GT
Sbjct: 476 GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEI-IPDIEVSRGGTR 534
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
Y+FSDGIGKIS+EFAR+VAIKCG K TPSAFQIRY GYKGVVAVDPTS KKLSLR+SM
Sbjct: 535 YLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMF 594
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY SENT LDVL SK+QPCFLNRQLITLLSTLGV D FE+KQ+EAVDQLD +LTDPLR
Sbjct: 595 KYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLR 654
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR KTRIF PNGR
Sbjct: 655 AQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 714
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
SMMGCLDETRTLE+GQVFV+ S + R + + + +I G V+VAKNPC
Sbjct: 715 SMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR--GQCYLIKGSVVVAKNPC 772
Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
LHPGD+R+L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +
Sbjct: 773 LHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQ 832
Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
Q+ PMDYTP + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA ADKE LKA S C
Sbjct: 833 QISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPC 892
Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
+ELA FSIAVDFPKTGVPAEIPS+L +E+PDFMEK DKP+YES VIGKLFREVKDIA
Sbjct: 893 VELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIA 952
Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
P+ S I+SFT +VAR YD DMEVDGFEDYID+AFYYK YD+KLGNLM+YYGIKTE+E+
Sbjct: 953 PRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAEL 1012
Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
LSGS MK S+ F +++DA+AIG AVR+LKKEAR+WF+ K G+ L SQ DD+ AKASAWYH
Sbjct: 1013 LSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEK-GSGLDSQADDVDAKASAWYH 1071
Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSK-KRSL-NQSLENQFRFGLR 3597
VTYH YWGCYN+G++RDHFLSFPWCVY+KLI IKR +++ +RSL S+E QF GL
Sbjct: 1072 VTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLH 1131
Query: 3598 LS 3603
LS
Sbjct: 1132 LS 1133
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 1522 bits (3941), Expect = 0.0
Identities = 766/1139 (67%), Positives = 905/1139 (79%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQVS FPS+V AE VK FLE YTG+ TVYALK+RQ K + R++A+VQFT
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQK---NGGRAYAIVQFTKSTD 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I L NQRLYYG+SYLK EM+ DIVPKPRT + ++E LHFGCQ+S EKF LW+
Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+D +N G G+RKL+FLL+H +EY+LDL Y++IWQI+L PR++ ++K+LLIQ+ A
Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQ--TSKYLLIQLFGA 175
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+EK + SSG ++ +P NYF D PDDQWVR TDFT SSCIGQSS +CLEL Y +LP
Sbjct: 176 PRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP 235
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
RENF YKE EG+F+LESGS++S ++LVPIV P G +LPY+ILFKIN LVQNG +
Sbjct: 236 NFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPS-LGIDLPYEILFKINLLVQNGCI 294
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
GP LD+ F+RLV+P I +I+ ALEKL + K+ C+EP KWL EQY Y+ SK P S
Sbjct: 295 PGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGS 354
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
ISLDDGLV VRRVQ+TPS+VYFCGPE+NVSNRV+RH+ IDNF+R++FVDE+ EK+
Sbjct: 355 PVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIH 414
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
STDL R + T++Y RILSTLKNGI+IG+K+FE LAFSSSQLR+NS WMFA
Sbjct: 415 STDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASRE 468
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
G+TAA IR WMG F IRNVAKYAAR GQSFSSS ETL+V + EI+ I DV+I+RDG
Sbjct: 469 GLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEI-IDDVEIKRDGIN 527
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
YVFSDGIGKIS++FA++VA KC + TPSAFQIR GG+KGVVAVDPTS KKLSLR SMS
Sbjct: 528 YVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMS 587
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D FE+KQ+E VDQL+ ILTDPL+
Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLK 647
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR K+RIF NGR
Sbjct: 648 AQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGR 707
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
SMMGCLDETRTL+YGQVFVQVS G R ++ I+ GKV+VAKNPC
Sbjct: 708 SMMGCLDETRTLDYGQVFVQVS--GSRS---------------EQRFIVQGKVVVAKNPC 750
Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
LHPGDVRVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +
Sbjct: 751 LHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSK 810
Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
Q+ PMDY+PA + L+H+VTIEEV+EYFTNYIVNDSLGIIANAHT FAD+EP KA S+ C
Sbjct: 811 QIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSEC 870
Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
LA LFSIAVDFPKTGVPAEIP L VKE+PDFMEK DKPTY+S+ VIGKLFREVKD+A
Sbjct: 871 KWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLA 930
Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
P I+S T+E YD DMEVDG+EDY+D+AFY+K YD+KLGNLM+YYGIKTE+EI
Sbjct: 931 PNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEI 990
Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
LSG IMK SR F +++DA+AIG AVR+L+KEAR+WF+ K G L S+ DDLYAKASAWYH
Sbjct: 991 LSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEK-GNGLDSEADDLYAKASAWYH 1049
Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600
VTYH YWG YN+G++R+HFLSFPWCVY+KLI IK+ S++ S SLE+ F GLRL
Sbjct: 1050 VTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 1493 bits (3865), Expect = 0.0
Identities = 761/1141 (66%), Positives = 893/1141 (78%), Gaps = 2/1141 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQ+SGFPS VSAE+VK FLE +TG GTVYA+K+R K S RS+A+VQF + E+
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGS--RSYAIVQFMTVET 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I L N RL+YG SYL M+RDIVPKPR + SL+ LHFGCQIS+EKFS LW+
Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+ ++ G GLR+L F LT+ +EY+L L Y+++WQI+L PR + + K+LLIQ+ A
Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQ--TAKYLLIQLLGA 176
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PR++EK + S DI +P FNYF+DTPDDQWVRATDFT S CIG SSA+ LEL Y LP
Sbjct: 177 PRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP 236
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
+RENF YKE E RF+LESGS+FS +DLVPIV PP G LP++ +FKIN L+QNG L
Sbjct: 237 DLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPP-SGINLPFETVFKINMLLQNGCL 295
Query: 1084 SGPTLDSTFFRLVHPSNIP-VHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260
SGPTLD F+RLV P I V I ALEKL + K+ YEP WL EQY KYLT+ P+
Sbjct: 296 SGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPK 355
Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440
I+LD GLVYVRRVQVTPSKVYFCGPE+NVSNRV+R Y ID F+RVSFVDE+ EK+
Sbjct: 356 PPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415
Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620
STDLSPR + + T +Y+RILS L+NGI IG++KFE LAFSSSQLRDNSLWMFA
Sbjct: 416 FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475
Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800
+G +A IR+W+G+FR IRNVAKYAAR GQSF SS ETLTV E + I D++IER
Sbjct: 476 DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEV-ISDIEIERGAV 534
Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980
+YVFSDGIGKISS FA+RVA KCG+K PSAFQIRY GYKGVVAVDPTS KLSLRKSM
Sbjct: 535 KYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSM 594
Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160
KY SE LDVL +SK Q C+LNRQLITLLSTLGV DR+FEKKQ+EAV QL+ IL DPL
Sbjct: 595 WKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPL 654
Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340
RA+EAL++MS GE N+LKE+L CGY+P+AEPFLSMMLQ FRASKL ELR KTRI P+G
Sbjct: 655 RAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDG 714
Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
R+MMGCLDE RTLEYG+VFVQ S HR F + F + ++ I++G+V+VAKNP
Sbjct: 715 RAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGS--GQNYIVVGRVVVAKNP 772
Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
CLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP+
Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832
Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
+Q +PMDY+PA + LDHDV IEEVQEYFTNYIVNDSLGIIANAHTAFADKEP KA S +
Sbjct: 833 KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPS 892
Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
CIELA LFSIAVDFPKTGVPA IP L+VKE+PDFMEKL+KPTYES VIGKLFREVKDI
Sbjct: 893 CIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDI 952
Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
AP + FTKEVA SYD DME DGFEDYID+AFYYK YD+KLGNL+DYYGIK+E+E
Sbjct: 953 APNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAE 1012
Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420
I+ GSIM+ S+ F +R+DA++I AVRAL+KEARTWF+ K G+ L S DD+YAKASAWY
Sbjct: 1013 IIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEK-GSSLDSAADDVYAKASAWY 1071
Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLR 3597
+VTYH YWGCYN+G++RDH+LSFPWCVY+KL+ IKR K S +RSL SLE F L
Sbjct: 1072 YVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLH 1131
Query: 3598 L 3600
L
Sbjct: 1132 L 1132
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1489 bits (3856), Expect = 0.0
Identities = 749/1140 (65%), Positives = 898/1140 (78%), Gaps = 1/1140 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GF S VSA VK FLE YTG TVYALK+RQ K + R+FA+VQFT
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
A I L NQRLYYG SYLK EM+ DIVPKPR + ++E ++FGCQ+SEEKF LWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+ LN G G+RKLEFLL++C +YKL+L Y++IWQI+LR P S+ ++K LLIQ+ A
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+EK + +S ++ DP NYF+D PDDQWVR TDFT S+CIGQSS + LEL +N +LP
Sbjct: 176 PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP 235
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
RENF YKE+EGR +LESGS++S + LVPIV P + +LP++ILFK+N LVQNG +
Sbjct: 236 NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
GP LD TF+RLV P + +I+ ALEKL + ++ CYEP +WL E+Y + S+ S
Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
TISLD+GLVYVRRVQ+TPS+VYFCGPE+NVSNRV+R + IDNF+R+SFVDE+ EK+
Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
ST++ R + T +YKRILSTL+NGI+IG K+FE LAFSSSQLR+NS WMFA
Sbjct: 415 STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
G+TAA IR WMGNF IRNVAKYAAR GQSFSSS ETL+V + EI+ IPD++I +DG +
Sbjct: 469 GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIK 527
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
YVFSDGIGKIS+EFA++VA KC +K TPSAFQIR GG+KGVVA+DPTS KLSLRKSM
Sbjct: 528 YVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSME 587
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV DR FEKKQ+E VDQL+ +LTDPL
Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLE 647
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF GR
Sbjct: 648 AQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGR 707
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
SMMGCLDETRTL YGQVFVQ S G R +R I+ GKVIVAKNPC
Sbjct: 708 SMMGCLDETRTLNYGQVFVQFS--GSRS---------------ERRFIVQGKVIVAKNPC 750
Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +
Sbjct: 751 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810
Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
Q+ PMDY+PA + LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S C
Sbjct: 811 QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPC 870
Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
+ELA LFSIAVDFPKTGVPAEIP L VKE+PDFMEK DKP+Y+SH VIGKLFREVK++A
Sbjct: 871 LELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLA 930
Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
P IK T+E + YD DMEV+GFEDYID+AF++K +YD+KLGNLMDYYG+KTE+EI
Sbjct: 931 PNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEI 990
Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
L G IMK SR F +++DA+AI AVR+L+KEAR+WF+ K G+EL + DD YAKASAWY+
Sbjct: 991 LGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYY 1049
Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLRL 3600
VTYH YWG YN+G++RDHFLSFPWCVY+KLI IK++K + + +L+ SLE++F+ GL L
Sbjct: 1050 VTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1484 bits (3842), Expect = 0.0
Identities = 767/1130 (67%), Positives = 900/1130 (79%), Gaps = 1/1130 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV G PS+VSA +K FLE YTGEGT+ AL+++QPK+ S + A VQFTS
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I SL Q L+YG +YLK EM DI+PKPRT + S++ LHFG Q+S E+F LWK
Sbjct: 59 AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
++ + GFGLRK F L+H EYKL+LS ++IWQIQLR PR + +TKFLLIQ+ A
Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQ--NTKFLLIQLLDA 175
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
P+I+EK + A +YF++TPDDQWVR DFT S IGQSSA+CLEL + +LP
Sbjct: 176 PQIYEKDVS---------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP 226
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
ENF YKE++ +F+LESG++FS + LVPIV PP QG LP+ ILFKIN+LVQNG L
Sbjct: 227 NFCENFARYKENDRKFILESGASFSGNLHLVPIVGPP-QGSNLPFKILFKINTLVQNGCL 285
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
SGPTLD+ FFR V P I + IE ALEKL + ++ CYEPV+WL EQY Y+ SK S
Sbjct: 286 SGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGS 344
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
ISLD GLVYVRRVQ+TP KVYFCGPEVNVSNRV+R+Y IDNF+RVSF+DE+ EK+
Sbjct: 345 PAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIH 404
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
ST +SPR ++NE ++ T +Y+RILS L+NGI+IG+KKF+ LA SSSQLRDNS WMFA
Sbjct: 405 STVISPR-MSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRP 462
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
G+TAA IR MG+F IRNVAKYAAR GQSFSSS ETL V +HEI+ IPD++ RDGT
Sbjct: 463 GLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIETHRDGTT 521
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
YVFSDGIGKIS+E A RVAIKCG K+STPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM
Sbjct: 522 YVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 581
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY SENT+LDVL+WSK++PCFLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLR
Sbjct: 582 KYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLR 641
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGR
Sbjct: 642 AQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 701
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQ-FHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
SMMGCLDETRTLEYG+VFVQ+S G RQ F + F + + D + I+ GKV+VAKNP
Sbjct: 702 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNP 759
Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
CLHPGDVR+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP
Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819
Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
RQ+ PMDYTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE KA
Sbjct: 820 RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879
Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
C ELA LFSIA++FPKTGVPAEIP HLHVKE+PDFMEK +KPTYES VIGKLFREVKD+
Sbjct: 880 CKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939
Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
AP ++SFT++VA SYD+DMEVDGFEDY+ +AFYYK +YDFKLG+LMD GI+TESE
Sbjct: 940 APHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESE 999
Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420
ILSGSIMK S+ FD+RKDA+AI AVR+L+KEARTWF+ K G+ + DD+YA ASAWY
Sbjct: 1000 ILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN-KMGSGTYAGADDVYAIASAWY 1058
Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSL 3570
HVTYH YWGCYN+G+ DHFLSFPWCVY+KLI IKRDK S RSL+ SL
Sbjct: 1059 HVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS-IRSLHLSL 1107
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1482 bits (3837), Expect = 0.0
Identities = 745/1140 (65%), Positives = 894/1140 (78%), Gaps = 1/1140 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GF S VSA VK FLE YTG TVYALK+RQ K + R+FA+VQFT
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
A I L NQRLYYG SYLK EM+ DIVPKPR + ++E ++F C +SEEKF LWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+ LN G G+RKLEFLL++C +YKL+L Y++IWQI+LR P S+ ++K LLIQ+ A
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+EK + +S ++ DP NYF+D PDDQWVR TDFT S+CIGQSS +CLEL +N +LP
Sbjct: 176 PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP 235
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
RENF YKE+EGR +LESGS++S + LVPIV P + +LP++ILFK+N LVQNG +
Sbjct: 236 NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
GP LD TF+RLV P + +I+ ALEKL + ++ CYEP +WL E+Y + S+ S
Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
TISLD+GLVYVRRVQ+TPS+VYFCGPE+NVSNRV+R + IDNF+R+SFVDE+ EK+
Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
ST++ R + T +YKRILSTL+NGI+IG K+FE LAFSSSQLR+NS WMFA
Sbjct: 415 STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
G+TAA IR WMGNF IRNVAKYAAR GQSFSSS ETL+V + EI+ IPD++I +DG +
Sbjct: 469 GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIK 527
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
YVF DGIGKIS+EFA++VA KC +K TPSAFQIR GG+KGVVA+DPTS KLSLRKSM
Sbjct: 528 YVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSME 587
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D FEKKQ+E VDQL+ +LTDPL
Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLE 647
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF GR
Sbjct: 648 AQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGR 707
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
SMMGCLDETRTL YGQVFVQ S G R +R I+ GKVIVAKNPC
Sbjct: 708 SMMGCLDETRTLNYGQVFVQFS--GSRS---------------ERRFIVQGKVIVAKNPC 750
Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +
Sbjct: 751 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810
Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
Q+ PMDY+PA + LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S C
Sbjct: 811 QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPC 870
Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
+ELA LFSIAVDFPKTGVPAEIP L VKEFPDFMEK DKP+Y+S+ VIGKLFREVK++A
Sbjct: 871 LELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLA 930
Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
P IK T+E + YD DMEV+GF DYID+AF+YK +YD+KLGNLMDYYG+KTE+EI
Sbjct: 931 PNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEI 990
Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
LSG IMK SR F +++DA++I AVR+L+KEAR+WF+ K G+EL + DD YAKASAWY+
Sbjct: 991 LSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYY 1049
Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLRL 3600
VTYH YWG YN+G++RDHFLSFPWCVY+KLI IK++K + + +L+ SLE++F+ G L
Sbjct: 1050 VTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 1458 bits (3774), Expect = 0.0
Identities = 747/1139 (65%), Positives = 882/1139 (77%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MGRTIQV GFP V+AE VK FLENYTGEGTV AL+++ K R R++A VQFT+
Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGR---RAYARVQFTNIRC 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I L RLYYGTSYLK E DIV PRT +E L+FGCQIS KFS LWK
Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
G + G G++K+ F L H +EYK+ LSY++IWQI L + + S+K L+IQ+ A
Sbjct: 118 GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQ--SSKLLVIQLFGA 175
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI++K SG +Y +YF T DDQWVR TDFT S IGQSS++CL+L Y +LP
Sbjct: 176 PRIYKK---LSGSVY-----SYFMVTQDDQWVRTTDFT-QSLIGQSSSLCLQLPYGMRLP 226
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
R+NF YKE E F LE+G FSH DLVPIV PP + LPY +LFK+ SLVQ G L
Sbjct: 227 NFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIK-LPYTLLFKVCSLVQTGCL 285
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
GP LD +FF LV+P+ + +IE ALEKL + K+ CY P WL+EQY +Y TSK P+S
Sbjct: 286 PGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKS 345
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
I LDDGLVYV RVQVTP++VYF GPEVNVSNRV+RHYR IDNF+RVSFVDE+W+KM
Sbjct: 346 PAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMY 405
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
STDLSPRV ++ K T LY+R++S L++G+ IG++KF+ LAFSSSQLRDNSLWMFAP +
Sbjct: 406 STDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTD 465
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
G+ A IREWMG+F IRNVAKYAAR GQSF SS ETL+V + EI+ I DVK +GTE
Sbjct: 466 GLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEE-IQDVK---NGTE 521
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
Y FSDGIGKIS +FAR+VA KCG++SSTPSAFQIRYGGYKGVVAVDP+S KKLSLR SM
Sbjct: 522 YTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSML 581
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY+S+NT LDVL WSK+QPCFLNRQ+ITLLSTLGV+D +FEK+Q+EAV QLD +L DP+R
Sbjct: 582 KYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMR 641
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
AQEAL++MSPGEN ++LKEMLKCGY+PD EPFLSMMLQTFRASKLL+LR K R+F P R
Sbjct: 642 AQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKAR 701
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
MMGCLDET L+YGQVFV+ S A R + + NE R + GKV+VAKNPC
Sbjct: 702 QMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANE---RFDPVRGKVVVAKNPC 758
Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
LHPGDVRVL AV+VP L+HMVDCVVFP+ GKRPHPNECSGSDLDGDIYFV WD +LIP +
Sbjct: 759 LHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTK 818
Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
QV+PMDY PA + LDHDVTIEEV++YFTNYIVNDSLGIIANAHT FADKEPL A S C
Sbjct: 819 QVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPC 878
Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
+ELA LFSIAVDF KTG+PAEIP HL VKE+PDFMEK DK Y S RVIGKLFREVKDIA
Sbjct: 879 LELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIA 938
Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
PQ S +SFTKEVAR SYD DMEVDGFED+IDEAF +K EYD+KLGNLM+YYG+KTE+E+
Sbjct: 939 PQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEV 998
Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
LSG IMK S+ FDRRKDA+AIGAAVR+L+ EAR+WF K GTE DD+YAKASAWY+
Sbjct: 999 LSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF--KKGTE----ADDVYAKASAWYY 1052
Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600
VTYH Y+GCYN+G+ RDH+LSFPWCVY+KL+ IK+D NS++ S SL QF +R+
Sbjct: 1053 VTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKD-NSRRASQMASLRRQFNDRVRI 1110
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 1452 bits (3760), Expect = 0.0
Identities = 746/1145 (65%), Positives = 892/1145 (77%), Gaps = 5/1145 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TI++ GFP+SV+ VK F+E YTGEGTV+A+KLR K PR+FA++QFT+ S
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRV--PRAFAIIQFTTANS 58
Query: 364 AEQISSLIN---QRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSS 534
A + S N + L YGTSYLK EM+RDIVP+PR + SL+ L FGCQIS+ +FS
Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118
Query: 535 LWKGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQV 714
LWK D I+N G G+RK+ FL +H +++YKL+LSY++IW+I+L PR+ +T++LLIQ+
Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNE--TTRYLLIQL 176
Query: 715 STAPRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNC 894
APR+FE + +S +I+ DP FN+F+D PD+QW+RA DFT S IGQSSAICLEL
Sbjct: 177 LGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGR 236
Query: 895 KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074
+LP RENF Y+E E ++ L++G FS LVPIV PP G ++ YDILFK+NSLVQ+
Sbjct: 237 QLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPP-LGVKISYDILFKVNSLVQH 295
Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
L+GP LD F+RLV P +P IE ALEK+ +SK+ CYEP KWL +QY YL SK+
Sbjct: 296 ACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNH 355
Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
PRS ISLD GLVYVRRVQ+TP KVYFCGPE+NVSNRV+RH+R IDNF+RVSFVDE+ +
Sbjct: 356 PRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELD 415
Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
K+ STDLS R K T++Y RILS LKNGI++G+KKFE LAFSSSQLR+NSLWMFA
Sbjct: 416 KLFSTDLSSR----SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471
Query: 1615 PWN-GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVK-IE 1788
P G TAA IR+WMGNF IRNVAKYAAR GQSF SS ETL+V R E++ IPDVK +
Sbjct: 472 PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEI-IPDVKKLT 530
Query: 1789 RDGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSL 1968
DG EYVFSDGIGKIS EFA++VA KCG TPSAFQIRYGGYKGVVAVDP S KLSL
Sbjct: 531 YDGNEYVFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPKSCYKLSL 589
Query: 1969 RKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMIL 2148
RKSM KY S+NT LDVL SKFQPC+LNRQLI+LLSTLG++D +FEKKQ+E V+QL+ IL
Sbjct: 590 RKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTIL 649
Query: 2149 TDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIF 2328
TD L+AQE L++MS GE NVLKEML CGYKP+ EPFLSMMLQTFRASKLLELR K+RIF
Sbjct: 650 TDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIF 709
Query: 2329 EPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIV 2508
P GR+MMGCLDETRTLEYGQVFVQ S Q ++ FF + ++ ++ GKV+V
Sbjct: 710 IPKGRAMMGCLDETRTLEYGQVFVQFS-NNRLQNLSDDFFSYDL----PKNYMVKGKVVV 764
Query: 2509 AKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPE 2688
AKNPCLHPGDVRVLQAV+VP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD E
Sbjct: 765 AKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHE 824
Query: 2689 LIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 2868
LIP R + PMDYT +V LDHDV IEEV+EYF NYIVNDSLGIIANAHT FADKE LKA
Sbjct: 825 LIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKA 884
Query: 2869 ESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFRE 3048
S+ C++LA LFS AVDFPKTGVPA IP LHVKE+PDFMEK DKPTY+SH VIGKLFRE
Sbjct: 885 MSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFRE 944
Query: 3049 VKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIK 3228
VK+I+ A I SFTK VAR SYD +MEVDGF DY+D+AFY+K YD+KLGNLMDYYGIK
Sbjct: 945 VKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIK 1004
Query: 3229 TESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKA 3408
TE+EIL G+IMK S+ F++R+DA+AI AVR+L+KEAR WF+ + ++ S D+YAKA
Sbjct: 1005 TEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKA 1064
Query: 3409 SAWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRF 3588
SAWYHVTYH YWGCYN+G++RDH+LSF WCVY L+ IK++K S +RS SLE F
Sbjct: 1065 SAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRS---SLEYSFS- 1120
Query: 3589 GLRLS 3603
GLRLS
Sbjct: 1121 GLRLS 1125
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 1446 bits (3744), Expect = 0.0
Identities = 734/1138 (64%), Positives = 885/1138 (77%), Gaps = 2/1138 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TI +SGFPS V+A+ VK FLE +TG GTVYA+K+R PK R R +A+VQFTS
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPK--RGGGRLYAIVQFTSATQ 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I SL NQRL+YG+SYLK + DIVPKPRT M +LE L FGCQ+S EKF LW+
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
G ++ G G+RK+ F L + +EY+L+LSY+ IWQIQL PR + S K+LLIQ+S A
Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQ--SMKYLLIQLSGA 176
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI++K +SG I+ +P N+F++ DDQWVR TDFT+S IGQSS++CL+L +LP
Sbjct: 177 PRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLP 236
Query: 904 GIRENFHNYKEDEGRF-LLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080
++NF Y+E E F L++ + FS DL PIV+ + LPY ILFKIN+LVQ G
Sbjct: 237 PFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS--RSHVLPYKILFKINALVQYGC 294
Query: 1081 LSGPTLDSTFFRLVHPS-NIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
+ P LD++F+RLV + +E ALEKL H K+ Y+P +L EQY KY S+H P
Sbjct: 295 IPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPP 352
Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
S ISLDDGLVYVRRVQ+TP KV+FCGPEVNVSNRV+RH+ IDNF+RVSFVDE+W+K
Sbjct: 353 NSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDK 412
Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
MRSTDL PR+ + + TD+Y+RILS LKNGI+IG+K F+ LAFSSSQLRDNSLWMFA
Sbjct: 413 MRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFAS 472
Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
I AA IR WMG+FR I+N AKYAAR GQSF SS E L+V +E + IPD+++++
Sbjct: 473 GPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGE 531
Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
+YVFSDGIGKISS+FA+ VA KCG ++ PSAFQIRYGGYKGVVAVDP S KLSLRKS
Sbjct: 532 IKYVFSDGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKS 590
Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
M K+ S+NT LDVL SK+QPCFLNRQLITL+STLGV D IFEKKQ EAV+QLD ILTDP
Sbjct: 591 MCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDP 650
Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
L+AQEALE+MSPGEN N+LKEMLKCGY+PD EP+LSMMLQTFRASKLLELR K+RIF PN
Sbjct: 651 LKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPN 710
Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517
GR+MMGCLDETRTLEYGQVFVQ+S HR + F R E L+I G V VAKN
Sbjct: 711 GRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGRE---HHLVIEGNVTVAKN 767
Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697
PCLHPGDVRVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP
Sbjct: 768 PCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP 827
Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877
RQ+ PMDYTPA LD DVT E++QEYF NY+VNDSLGIIANAHTAFADKE KA S+
Sbjct: 828 SRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSS 887
Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057
C+ELA LFS+AVDFPKTGVPA IPSHL+VKEFPDFMEK D+P+YES++VIGKLFR VKD
Sbjct: 888 PCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKD 947
Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237
IAP S I+SFT++VAR YD DMEV+GFEDY+++AFY+K YD+KLGNL+DYYGIK+E+
Sbjct: 948 IAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEA 1007
Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417
E+LSGSIM+ S+ F RR+DA+AI AVR+L+KEARTWF+ + G + S DDL+AKASAW
Sbjct: 1008 EVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGAD--SNSDDLFAKASAW 1065
Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591
Y+VTYH YWGCYN+G+ RDH+LSFPWCVY+KL+ IK + N ++R L + RFG
Sbjct: 1066 YYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIK-ENNLRRRERAARLASFDRFG 1122
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 1442 bits (3734), Expect = 0.0
Identities = 744/1140 (65%), Positives = 890/1140 (78%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQ+ GFPS +AE +K FLE +TGEG+V+ALKLR K S R +A++QF S
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAK---SGGRFYAIIQFQSISQ 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE+I SL N RL+YG SYL DIVPKPRT + SL LH GCQ++++KFS LW
Sbjct: 58 AEKIISLANARLWYGRSYLNA-RPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+ ++ GFG+R L+F L + Y+L LSY++IWQI+L H R R S K+L+IQ+
Sbjct: 117 TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGR--SAKYLVIQLYGN 174
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+++ +CSSG G NYFRD PDD WVR TDFT SCIGQSS++CL L+ + +LP
Sbjct: 175 PRIYQQEVCSSGG-NGYEDMNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELP 231
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
ENF YK+ +G+F+LE+GSTFS DLVPIV P G +LPYDILFKIN LVQ G L
Sbjct: 232 DFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPA-GIDLPYDILFKINLLVQQGCL 290
Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
SGPTLD+ F+RLV P I IE AL+KLS+ K+SCYEP WL E+Y KY+ SK P+
Sbjct: 291 SGPTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKP 350
Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
+ ISLD GLVYVRRVQ+TPSKVYF GPEVNVSNR++R Y IDNF+RVSFVDE+ EK+
Sbjct: 351 ALISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLY 410
Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
STDLSPR T + T +Y R+LS L++GI++G+KKFE LAFSSSQLR+NSLWMFAP +
Sbjct: 411 STDLSPRTSTRK----TRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTD 466
Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
+A IR MG+FR IRNVAKYAAR GQSF SS ETL+V R+E++ IPDV + G +
Sbjct: 467 EDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEV-IPDVTVNSCGIK 525
Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
YVFSDGIGKIS++FA RVA KCG K+ TPSAFQIRYGGYKGVVAVDPTS KLSLRKSMS
Sbjct: 526 YVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMS 585
Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
KY SENT LDVL SK+QPCFLNRQLITLLSTL V+D +F KKQ+ AV QL+ ILTDPL+
Sbjct: 586 KYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLK 645
Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
A+EAL++MS GE+ NVLKE+L CGYKP+ EPFLSMMLQTFRASKLLELR KTRIF P+GR
Sbjct: 646 AEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGR 705
Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
+MMGCLDETRTLEYGQVFVQ S RQ + I + LD II GKV+VAKNPC
Sbjct: 706 AMMGCLDETRTLEYGQVFVQFSGKRRRQLFDD---ICIHSSLDS-CFIIEGKVVVAKNPC 761
Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +
Sbjct: 762 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPK 821
Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
Q++PMDYTPA + +D DVTIEEV+EYF NYIVNDSLGIIANAHT FAD + KA S+ C
Sbjct: 822 QIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPC 881
Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
++LA LFSIAVDFPKTGVPAEIP L+ KE+PDFMEK DK TY SH VIG+LFREVKDIA
Sbjct: 882 LQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIA 941
Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
P S I SFT++VA YD DMEVDGFEDY+++AFY+KG YD+KLGN++DYYGIKTE+EI
Sbjct: 942 PHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEI 1001
Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
LSGSIM S+ F +R+DADAI AV++L+KEAR WF+ K+ T + S DD+YAKASAWYH
Sbjct: 1002 LSGSIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKD-TGIDSGDDDVYAKASAWYH 1060
Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRLS 3603
VTYH Y+G YN+G++R HF+SFPWCV++KL +IK++K ++ R L SLEN+ R+GLR S
Sbjct: 1061 VTYHPNYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQAR-LISSLENRLRYGLRFS 1119
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 1426 bits (3692), Expect = 0.0
Identities = 725/1141 (63%), Positives = 871/1141 (76%), Gaps = 12/1141 (1%)
Frame = +1
Query: 187 GRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPESA 366
GRT+QVSGFP AE VK FLE+ TG GTVY LK+R K+ + N R FA+VQFT+ +SA
Sbjct: 75 GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKS-KPNSRVFAIVQFTTSKSA 133
Query: 367 EQISSLINQ--RLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
E I SL Q LY+G SY+ V M+ DIVP PR LE L+FG QISEE F+ LW
Sbjct: 134 EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193
Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
+ + GFGL+K+ F L H ++YKLDL Y++IWQIQLR P + T++L++Q+
Sbjct: 194 SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTE--GTRYLVLQMQG 251
Query: 721 APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
APRIF+KPL S DIY P FNY++D PD+QWVR+ DFT S IGQSS++CL L ++
Sbjct: 252 APRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI 311
Query: 901 PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080
P IRENF YKE G F L++GS+FSH + LVPIV PP Q + LPY ILF++NSLVQNG+
Sbjct: 312 PNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIK-LPYKILFRVNSLVQNGF 370
Query: 1081 LSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260
L GPTLD+ F+ L++ +P +ER+LE +S + C EP KWL+EQY KY P
Sbjct: 371 LVGPTLDTEFYNLLN--GLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPS 428
Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440
+ ISL+ GLVYV RVQVTPSKVYF GPEVNVSNRV+R + IDNF+R+SF+DED+ +
Sbjct: 429 PAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSI 488
Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620
RSTDLS R+ + ++KHT +Y R+LSTLKNGI+IG+KKFE LAFSSSQLRDNS WMF+P
Sbjct: 489 RSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPI 548
Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800
+GITAA IR+WMG+F IRNVAK AAR GQSF SS ETL V E++ I D+K
Sbjct: 549 DGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVER-ISDIK----NG 603
Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980
+YVFSDGIGKIS EFA++VA+KCG TPSAFQIRYGGYKGVVAVDPTS KLSLR SM
Sbjct: 604 KYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSM 663
Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160
KY S NT LDVL +SKFQPCFLNRQ+ITLLSTLGV+D +FE KQK+AV QLD IL DP
Sbjct: 664 RKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPE 723
Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340
A EALE+MSPGENVNVLKEML CGY PD+EPFLSMMLQTFR KL EL+ KTRIF PNG
Sbjct: 724 SAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNG 783
Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
RSMMGCLDET LEYGQVFVQ S G+R+ H NE+ DQR +++GKVIVAKNP
Sbjct: 784 RSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNP 843
Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
CLHPGDVR+L A++VPAL HMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDP LIP
Sbjct: 844 CLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPC 903
Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
Q PM+Y PA + LDH+VTIEE++EYFTNY++NDSLGIIANAHT FADKEP+KA+S
Sbjct: 904 HQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTP 963
Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
C++LA LFS+AVDFPKTGVPA+IP HL+VKE+PDFM+K DKPTY+S RVIGKLFREVKD+
Sbjct: 964 CVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDL 1023
Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
P S I SFTK VA SYD DMEVDGFE Y+D+A +YK EYDFKL LMD+YGIKTE+E
Sbjct: 1024 PPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAE 1083
Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELS---SQGDDLYAKAS 3411
I+SG+I+ ++ F +R+DA+AI A+R+L+KE R WF K S DD+YAKAS
Sbjct: 1084 IVSGNILSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKAS 1143
Query: 3412 AWYHVTYHEKYWGCY--NDGLDRDHFLSFPWCVYNKLINIK-----RDKNSKKRSLNQSL 3570
AWYH+TYH +YWG Y DG +R HF+SFPWC+Y+KLI+IK R +NS+ SL ++
Sbjct: 1144 AWYHITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTM 1203
Query: 3571 E 3573
E
Sbjct: 1204 E 1204
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1422 bits (3682), Expect = 0.0
Identities = 734/1126 (65%), Positives = 872/1126 (77%), Gaps = 4/1126 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP +SAE VK FLEN+TG GTVYAL+++Q K R R+FA VQF + +S
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGR---RAFAKVQFANNKS 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I L ++ LYYG SYLK EMK DIV +PRT + ++ L+FGCQIS++KF+ L
Sbjct: 58 AEFIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS 116
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
D + G GL+K+ F L+H +YKL LSY++IWQ+ L P + + +FLL+Q+ A
Sbjct: 117 K-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQ--NAQFLLLQLFGA 173
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+++ D +++F++TPDDQWVR TDFT S IG SS++CLE +LP
Sbjct: 174 PRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFRNGVQLP 224
Query: 904 GIRENFHNYKEDEGRFLLESGSTFS--HRMDLVPIVEPPPQGRELPYDILFKINSLVQNG 1077
E+F YKE +F+L++G TFS ++ LVPIV P +G ELPY ILFKI+SL+Q+G
Sbjct: 225 NFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLP-EGIELPYKILFKISSLIQHG 283
Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
G L+ FF+LV P + IE ALEKL + K+ CY+PV+WL EQY +YL + P
Sbjct: 284 CFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLP 343
Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
+S I+LDDGLVYVRRV VTP KVYFCGPEVNVSNRV+R+Y I+NF+RVSFVDE+WEK
Sbjct: 344 KSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEK 403
Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
+ STDL PR T + TD+Y+RILSTL+NG IIG+K+FE LAFSSSQLRDNS+WMFA
Sbjct: 404 IHSTDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFAS 462
Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
G+TA IR WMG+FR IRNVAKYAAR GQSF SS ETL+V RHE++ IPDV G
Sbjct: 463 RPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVACSLHG 521
Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
T Y+FSDGIGKIS++FA RV IKCG++ TPS+FQIRYGGYKGVVAVDP S KLSLRKS
Sbjct: 522 TNYIFSDGIGKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKS 580
Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
M KY S N LDVL WSK+QPC+LNRQL+TLLSTLGV D + E+KQ EAVDQLD IL D
Sbjct: 581 MLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDS 640
Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF PN
Sbjct: 641 LKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPN 700
Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQF--HANPFFIRNENELDQRSLIIMGKVIVA 2511
GR+MMGCLDE+RTLEYGQVFVQ S AG RQF ++PF N++ I+ G V+VA
Sbjct: 701 GRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPF---NDSGSANCDFILKGNVVVA 757
Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691
KNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+L
Sbjct: 758 KNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDL 817
Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871
IP RQV+ MDYTPA + LDHDVTIEEV+EYFTNYI+NDSLGIIANAH FAD+EP A
Sbjct: 818 IPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAM 877
Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051
S+ C +LA LFSIAVDFPKTGVPAEIPS L KE+PDFMEK DKPTY S +VIGKLF++V
Sbjct: 878 SDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKV 937
Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231
K+ PQAS I +FT++VAR SYDSDM VDGFEDYIDEAFYYK EYD KLGNLMDYYGIKT
Sbjct: 938 KNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKT 997
Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411
E+EILSG IMK S+ FDRRKDA+AIG AVR L+KEAR WF R+ S DD+ AKAS
Sbjct: 998 EAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRR------SDIDDMLAKAS 1051
Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKK 3549
AWYHVTYH YWG YN+GL RDHF+SFPWCVY++LI IK+ K K+
Sbjct: 1052 AWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKR 1097
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 1422 bits (3680), Expect = 0.0
Identities = 737/1138 (64%), Positives = 878/1138 (77%), Gaps = 6/1138 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP +SAE VK FLEN+TG GTVYAL+++Q K R R+FA VQF + +S
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGR---RAFAKVQFANNKS 57
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
AE I L ++ LYYG SYLK EMK IV +PRT + ++ L+FGCQIS++KF+ L
Sbjct: 58 AEIIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+ +I G GL+K+ F L++ +YKL LSY++IWQ+ L P + +FLL+Q+S A
Sbjct: 117 KVVSI-KFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQ--KAQFLLLQLSGA 173
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
PRI+++ D +++F++TPDDQWVR TDFT S IG SS++CLE +LP
Sbjct: 174 PRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNGVRLP 224
Query: 904 GIRENFHNYKEDEGRFLLESGSTFSH---RMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074
E+F YKE + +L++G TFS ++ LVPIV P +G ELPY ILFKI+SL+Q+
Sbjct: 225 NFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLP-EGIELPYKILFKISSLIQH 283
Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
G G L+ FF+LV P + IE ALEKL + K+ CY+PV+WL EQY +YL +
Sbjct: 284 GCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQL 343
Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
P+S +I+LDDGLVYVRRV VTP KVYFCGPEVNVSNRV+R+Y IDNF+RVSFVDE+WE
Sbjct: 344 PKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWE 403
Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
K+ STDL PR T + TD+Y RILSTL+NG +IG+KKFE LAFSSSQLRDNS+WMFA
Sbjct: 404 KIHSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 462
Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794
G+TA IR WMG F+ IRNVAKYAAR GQSF SS ETL+V RHE++ IPDV
Sbjct: 463 SRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVVCSLH 521
Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974
GT Y+FSDGIGKIS++FARRVA+KCG++ TPS FQIRYGGYKGVVAVDP S KLSLR
Sbjct: 522 GTNYIFSDGIGKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRN 580
Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154
SM KY S N LDVL WSK+QPC+LNRQL+TLLSTLGV+D +FE+KQ EAVDQLD IL D
Sbjct: 581 SMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHD 640
Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334
L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF P
Sbjct: 641 TLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIP 700
Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFH--ANPFFIRNENELDQRSLIIMGKVIV 2508
NGR+MMGCLDE+RTLEYGQVFVQ + G RQF+ ++PF N++ I+ G V+V
Sbjct: 701 NGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPF---NDSGSTNCDFILEGNVVV 757
Query: 2509 AKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPE 2688
AKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+
Sbjct: 758 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPD 817
Query: 2689 LIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 2868
L+P RQ +PMDYTPA S LDHDVTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A
Sbjct: 818 LVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 877
Query: 2869 ESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFRE 3048
S+ C +LA LFSIAVDFPKTGVPAEIPS L KE+PDFMEK DKPTY S +VIGKLF++
Sbjct: 878 MSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQK 937
Query: 3049 VKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIK 3228
VKD PQAS I +FT +VAR SYD DM V+GFEDYIDEAFYYK EYD KLGNLMDYYGIK
Sbjct: 938 VKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIK 997
Query: 3229 TESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKA 3408
TE+EILSG IMK S+ FDRRKDADAIG AVR+L+KEARTWF R+ S DD+ AKA
Sbjct: 998 TEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR------SDIDDMLAKA 1051
Query: 3409 SAWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQ 3579
SAWYHVTYH YWG YN+GL RDHF+SFPWC+Y++LI IK+ K KK L+ SL NQ
Sbjct: 1052 SAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQ 1109
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 1412 bits (3655), Expect = 0.0
Identities = 734/1145 (64%), Positives = 870/1145 (75%), Gaps = 5/1145 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP+ VSAE VK FLE TG GTVYA+K+RQPK + PR FA+VQFT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNERY 58
Query: 364 AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
A QI + +RLYYG SYL E+ +DIVPKPR + ++ ++FGCQ+S +KF +LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118
Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
D ++ G G+RKL F + +Y+L+LSY++IWQI L P+ R S+KFL+IQV
Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176
Query: 721 APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
AP+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + +
Sbjct: 177 APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234
Query: 901 PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQN 1074
P RENF NY E FL+ESGS++S + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235 PDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293
Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
L GP LD ++L++P I+ LEKL H +SCYEP +WLR+QY + +
Sbjct: 294 ACLPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKL 353
Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
P S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY I+NF+RVSFVDED E
Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413
Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
K+RS DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFA
Sbjct: 414 KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 470
Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794
P +G+T+A IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+I
Sbjct: 471 PIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISL 529
Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974
GT YVFSDGIGKIS+EFARRVA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRK
Sbjct: 530 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589
Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154
SMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV+D +F+KKQ+E VD+LD ILTD
Sbjct: 590 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTD 649
Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334
PL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF
Sbjct: 650 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709
Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAK 2514
GRSMMGCLDETRTLEYGQV VQ S + R II G V+VAK
Sbjct: 710 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753
Query: 2515 NPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELI 2694
NPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELI
Sbjct: 754 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813
Query: 2695 PRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAES 2874
P R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S
Sbjct: 814 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873
Query: 2875 NACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVK 3054
+ CIELA FS+AVDFPKTGV AEIP HLHVKE+PDFMEK DKPTYES VIGKLFREVK
Sbjct: 874 DPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933
Query: 3055 DIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTE 3234
+ AP IKSFT +VA SYD DMEVDGFE+Y+DEAF+YK YDFKLGNLMDYYGIKTE
Sbjct: 934 ERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTE 993
Query: 3235 SEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASA 3414
+EILSG IM+ S+ F +R+DA++IG AVRAL+KE + F N TE ++ AKASA
Sbjct: 994 AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF---NATEEENES----AKASA 1046
Query: 3415 WYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG- 3591
WYHVTYH YWG YN+GL+RDHFL F WCVY+KL+ IK+ N+ +R ++LE R G
Sbjct: 1047 WYHVTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKK-TNAGRRQRQETLE---RLGH 1102
Query: 3592 -LRLS 3603
LRLS
Sbjct: 1103 VLRLS 1107
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 1411 bits (3653), Expect = 0.0
Identities = 723/1132 (63%), Positives = 868/1132 (76%), Gaps = 2/1132 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP V+ + VK+FLE TG GTVYA+K+RQPK R PR FA+VQFTS
Sbjct: 1 MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPK--RGGPRVFAIVQFTSERH 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
A I ++ +RLYYG SYLK EM++DIVPKPR + S+ ++FGCQ+S +K +LW
Sbjct: 59 ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
+ ++ G G+RKL F ++ +Y+L+LSY++IWQI L P+ S+KFL+IQV A
Sbjct: 119 AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGG--SSKFLVIQVIGA 176
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
P+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + +P
Sbjct: 177 PKIFEKEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP 234
Query: 904 GIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQNG 1077
RENF NY E FL++SGS++S + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235 DFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPP-GFDLPFEILFKVNTLVQNA 293
Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
L GP LD F++L++P I+ +LEKL H + CYEP +WLRE+Y K +SK P
Sbjct: 294 CLPGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLP 353
Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
S TISLDDGLVY+ RV VTP++VYF GPEVNVSNRV+RHY I+NF+R+SFVDED EK
Sbjct: 354 LSPTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEK 413
Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
+ S DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFAP
Sbjct: 414 IHSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470
Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
+ +TAA IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+
Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEAMYLD 529
Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
T YVFSDGIGKIS+EFAR+VA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRKS
Sbjct: 530 TRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589
Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
MSK+ S NT LDVL WSK+QPC+LNRQ+ITLLSTLGV+D +FEKKQ+E VD+LD ILTDP
Sbjct: 590 MSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDP 649
Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
L A EAL +M+PGEN N+LK++L CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF P
Sbjct: 650 LEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPG 709
Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517
GRSMMGCLDETRTLEYGQV VQ S NP + + II G V+VAKN
Sbjct: 710 GRSMMGCLDETRTLEYGQVVVQYS---------NP-------TMPGKRYIITGPVVVAKN 753
Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697
PCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYF+ WD ELIP
Sbjct: 754 PCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIP 813
Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877
R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S+
Sbjct: 814 PRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 873
Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057
CIELA FSIAVDFPKTG+ AEIP HL+VKE+PDFM+K DKPTYES VIGKLFREVK+
Sbjct: 874 PCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKE 933
Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237
AP I+SFT +VA SYD DMEV+GFE+YIDEAF++KG YD++LGNLMDYYGIKTE+
Sbjct: 934 RAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEA 993
Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417
EILSG IM+ S+ F +R+DA++IG AVRAL+KEA +WF N E + D+ AKASAW
Sbjct: 994 EILSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSWF---NNAEDKNDFDE-SAKASAW 1049
Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLE 3573
YHVTYH YWG YN+GL+RDHFLSF WCVY+KL+ IK+ N +R ++LE
Sbjct: 1050 YHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKK-ANVGRRQRQEALE 1100
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 1408 bits (3644), Expect = 0.0
Identities = 732/1145 (63%), Positives = 870/1145 (75%), Gaps = 5/1145 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP+ VSAE VK FLE TG GTVYA+K+RQPK + PR FA+VQFT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNEIY 58
Query: 364 AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
A QI + +RLYYG SYL E+++DIVPKPR + ++ ++FGCQ+S + +LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118
Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
D ++ G G+RKL F + +Y+L+LSY++IWQI L P+ R S+KFL+IQV
Sbjct: 119 SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176
Query: 721 APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
AP+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + +
Sbjct: 177 APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234
Query: 901 PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQN 1074
P RENF NY E +L+ESGS++S + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235 PDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293
Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
L GP LD ++L++P I I+ LEKL + +SCYEP +WLR+QY + +
Sbjct: 294 ACLPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353
Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
P S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY I+NF+RVSFVDED E
Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413
Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
K+RS DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFA
Sbjct: 414 KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 470
Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794
P G+T+A IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+I
Sbjct: 471 PIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISL 529
Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974
GT YVFSDGIGKIS+EFARRVA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRK
Sbjct: 530 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589
Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154
SMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGVED +FEKKQ+E VD+LD ILTD
Sbjct: 590 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTD 649
Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334
PL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF
Sbjct: 650 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709
Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAK 2514
GRSMMGCLDETRTLEYGQV VQ S + R II G V+VAK
Sbjct: 710 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753
Query: 2515 NPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELI 2694
NPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELI
Sbjct: 754 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813
Query: 2695 PRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAES 2874
P R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S
Sbjct: 814 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873
Query: 2875 NACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVK 3054
+ CIELA FS+AVDFPKTGV AEIP HL+VKE+PDFMEK DKPTYES VIGKLFREVK
Sbjct: 874 DPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933
Query: 3055 DIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTE 3234
+ AP IKSFT +VA SYD DMEVDGFE+Y+DEAF+YK YDFKLGNLMDYYGIKTE
Sbjct: 934 ERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTE 993
Query: 3235 SEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASA 3414
+EILSG IM+ S+ F +R+DA++IG AVRAL+KE + F N TE ++ AKASA
Sbjct: 994 AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF---NATEEENES----AKASA 1046
Query: 3415 WYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG- 3591
WYH+TYH YWG YN+GL+RDHFLSF WCVY+KL+ IK+ N+ +R ++LE R G
Sbjct: 1047 WYHITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKK-TNAGRRQRQETLE---RLGH 1102
Query: 3592 -LRLS 3603
LRLS
Sbjct: 1103 VLRLS 1107
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1406 bits (3640), Expect = 0.0
Identities = 726/1140 (63%), Positives = 858/1140 (75%), Gaps = 4/1140 (0%)
Frame = +1
Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
MG+TIQV GFP+ VSAE VK FLE TG GTVYA+K+RQPK + PR +A+VQFTS
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVYAIVQFTSERH 58
Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
I + +RLYYG SYLK E+++DIVPKPR + ++ + FGCQ+S +KF +LW
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
D ++ G G+RKL F + +Y+L+LSY++IWQI L P+ R S+KFL+IQV A
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIGA 176
Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
P+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + +P
Sbjct: 177 PKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 234
Query: 904 GIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQNG 1077
RENF NY E FL+ESGS++S + LVP+V+PPP G LP++ILFK+N+LVQN
Sbjct: 235 DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPP-GFSLPFEILFKLNTLVQNA 293
Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
LSGP LD F+RL++ I+ LEKL H + CYEP WLR++Y K+++ P
Sbjct: 294 CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 353
Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY I+NF+RVSFVDED EK
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
+RS DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFAP
Sbjct: 414 VRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470
Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
+ ITAA IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+I G
Sbjct: 471 IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLG 529
Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
T YVFSDGIGKIS+EFAR+VA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRKS
Sbjct: 530 TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589
Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
MSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV D +FEKKQ+E VD+LD ILT P
Sbjct: 590 MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 649
Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
L A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF
Sbjct: 650 LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 709
Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517
GRSMMGCLDETRTLEYGQV VQ S + R II G V+VAKN
Sbjct: 710 GRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKN 753
Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697
PCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P
Sbjct: 754 PCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVP 813
Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877
R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S+
Sbjct: 814 PRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 873
Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057
CIELA FS AVDFPKTGV A IP HL+VKE+PDFMEK DKPTYES VIGKLFREVK+
Sbjct: 874 PCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKE 933
Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237
AP IKSFT +VA SYD DMEVDGFE+Y+DEAFY K YDFKLGNLMDYYGIKTE+
Sbjct: 934 RAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEA 993
Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417
EILSG IM+ S+ F +R+DA++IG AVRAL+KE + F+ E S AKASAW
Sbjct: 994 EILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES------AKASAW 1047
Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDK--NSKKRSLNQSLENQFRFG 3591
YHVTYH YWG YN+GL+RDHFLSF WCVY+KL+ IK+ +++ + L++ RFG
Sbjct: 1048 YHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLRFG 1107
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 1405 bits (3636), Expect = 0.0
Identities = 721/1143 (63%), Positives = 879/1143 (76%), Gaps = 6/1143 (0%)
Frame = +1
Query: 190 RTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPESAE 369
+TI++ GFP+SV VK F+E +TGEG+V A+K+R+ K R++A++QF + A
Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQ--RAYAIIQFNTANQAT 62
Query: 370 QISSLINQR---LYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
+ SL N+ L YG SYLK+ EM RDIVP PRT + SL+ L+FGCQIS+E+FS LW
Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122
Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
+ D +++ G+RK F + H + ++K DLSY++IW+I+ P + + K+LLIQ+
Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK--TAKYLLIQLIG 180
Query: 721 APRIFEK--PLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNC 894
APRIFE P +S ++Y DP NYF+++PDDQW+RA DFT +CIGQSSAICLEL +
Sbjct: 181 APRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDR 240
Query: 895 KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074
P IRE F +Y+E+EG++ LESGS FSH +D+VPIV PP QG +P+DILFK+NSLVQ+
Sbjct: 241 DFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPP-QGIYIPFDILFKVNSLVQH 299
Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
G LSG LD+ F+ LV P I V IE ALEK+ +SKD CYEP +WL++QY YL S +
Sbjct: 300 GCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYP 359
Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
+S +ISLD+GLVYVRRVQ+TP KVYFCGPE+NVSNRV+RH+ IDNF+RVSFVDE+ +
Sbjct: 360 LQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELD 419
Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
K+ STDLS R+ T++Y RILS L+NGI+IG+KKFE LAFSSSQLR+NSLWMFA
Sbjct: 420 KLYSTDLSSRISVGV---RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFA 476
Query: 1615 PW-NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIER 1791
P G+TA IR WMG+F IRNVAKYAAR GQSF SS ETL+V R+EI+ IPD +++
Sbjct: 477 PTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEI-IPDAQVKH 535
Query: 1792 DGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLR 1971
D EYVFSDGIGKIS EFARRVA KCG STPSAFQIRYGGYKGVVAVDPTS KLSLR
Sbjct: 536 DTIEYVFSDGIGKISLEFARRVAKKCGY-DSTPSAFQIRYGGYKGVVAVDPTSSVKLSLR 594
Query: 1972 KSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILT 2151
KSM KY S+NT LDVL SK+QPC+LNRQLITLLSTL VED +FEKKQKEAV+QL+ ILT
Sbjct: 595 KSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILT 654
Query: 2152 DPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFE 2331
+ L+AQE L++MS GE N+LKEML CGYKP+ EPFLSMMLQTFRASKLLELR KTRIF
Sbjct: 655 NSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFI 714
Query: 2332 PNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVA 2511
P GR+MMG LDETRTLEYG+VFVQ S + + + + N SL++ GKV+VA
Sbjct: 715 PKGRAMMGVLDETRTLEYGEVFVQYS---NNRISSLSYGSAN-------SLVVTGKVVVA 764
Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691
KNPCLHPGDVRVL+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL
Sbjct: 765 KNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPEL 824
Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871
IP +PM+Y Q ++L HDV IEEV+EYFTNYI+NDSLGIIANAH FADKEP KA+
Sbjct: 825 IPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAK 884
Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051
+ CIELA LFSIAVDFPKTG+PA IP HL KE+PDFMEK DK TY+S+ VIGKLFRE+
Sbjct: 885 AEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREI 944
Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231
+ I + I SFT EVA+ SYD DME DGF DY+D+AFY+K YD+KLGNLMDYYGIK
Sbjct: 945 QGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKN 1004
Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411
ESEILSG+IM+ S+ F++R+D DAI AVR+L+KEAR+WF+ + T + S D YAKAS
Sbjct: 1005 ESEILSGNIMRMSKSFNKRRDGDAINMAVRSLRKEARSWFN-DDATGVDSGSVDAYAKAS 1063
Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591
AWY+VTYH YWG YN+G+ RDHFLSFPWCVY+ L+ IK++K ++ R SLE F
Sbjct: 1064 AWYYVTYHHSYWGSYNEGMKRDHFLSFPWCVYHLLVQIKKEK-ARMRMHAVSLEQSFSRR 1122
Query: 3592 LRL 3600
LRL
Sbjct: 1123 LRL 1125