BLASTX nr result

ID: Akebia25_contig00003199 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia25_contig00003199
         (3745 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1561   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1528   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1527   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...  1522   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1493   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1489   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1484   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1482   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...  1458   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1452   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...  1446   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1442   0.0  
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...  1426   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1422   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1422   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...  1412   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...  1411   0.0  
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...  1408   0.0  
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...  1406   0.0  
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1405   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1561 bits (4042), Expect = 0.0
 Identities = 780/1143 (68%), Positives = 919/1143 (80%), Gaps = 4/1143 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP+ V+AE VK FLE+ TG GTVYALKLR PK  +   R +A+VQFT+ E+
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK--KGVGRLYAIVQFTTKEA 58

Query: 364  AEQISSLI--NQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSL 537
            A+ I SL    ++L+YG SYL    M++D VP+PRT M ++E   LHFGC+IS EKF+ L
Sbjct: 59   ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118

Query: 538  WKGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVS 717
            W+G++  +N GFG+RK+ FLL+H   EY+L+L Y++IW+I+L  PR ++  TK+LLIQ+ 
Sbjct: 119  WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--TKYLLIQLL 176

Query: 718  TAPRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCK 897
             APRIF+K + S   +Y  P FN+F++ PDDQWVR TDFT S+ IGQS+ +C+EL Y  +
Sbjct: 177  GAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236

Query: 898  LPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNG 1077
            LP  +ENF  YKE E RF+LE+GS +S  +DLVPIV PP  G  LPY+ILFKIN LVQNG
Sbjct: 237  LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP-DGIALPYEILFKINLLVQNG 295

Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHH--IERALEKLSHSKDSCYEPVKWLREQYTKYLTSKH 1251
             ++GP LDS F+RLV P   PV    IE AL+KL H K+ CYEP +WL +QY KY+TS+ 
Sbjct: 296  CVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRS 355

Query: 1252 TPRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDW 1431
             P S  ISLDDGLVYV RVQVTPS+VYFCGPE+NVSNRV+RH+R  IDNF+R+SF+DED 
Sbjct: 356  KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415

Query: 1432 EKMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMF 1611
            +K+ STDLSPR  +  D   T +Y RILSTL+NGI+IG++KFE LAFSSSQLR++S WMF
Sbjct: 416  DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475

Query: 1612 APWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIER 1791
            A   G+TAA IREWMGNFR+IRNVAKYAAR GQSFSSS ETL+V   EI+  IPDVKIE 
Sbjct: 476  ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEI 534

Query: 1792 DGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLR 1971
              T+YVFSDGIGK+S+EFAR+VA KCG+K + PSAFQIRYGGYKGVVA DPTS KKLSLR
Sbjct: 535  GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 594

Query: 1972 KSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILT 2151
             SM KY SE T LDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV QLD ILT
Sbjct: 595  DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 654

Query: 2152 DPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFE 2331
            DPL+AQEALE+MSPGEN N+LKE+L CGYKPDAEPFLSMMLQTFRASKLLELR KTRIF 
Sbjct: 655  DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 714

Query: 2332 PNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVA 2511
            PNGRSMMGCLDETRTL YGQVFVQ+S AG+RQ H       +     ++  I+ G V+VA
Sbjct: 715  PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS--RQRFIVQGLVVVA 772

Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691
            KNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL
Sbjct: 773  KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 832

Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871
            IP +Q  PMDYTPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIANAHT FAD+EP KA 
Sbjct: 833  IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKAR 892

Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051
            S  C++LA  FSIAVDFPKTGVPAEIP HL+VKE+PDFMEK DKPTYES  VIGKLFR V
Sbjct: 893  SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 952

Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231
            KDIAP  SCI+ FTKEVAR SYD DMEVDGFED+ID+A Y+KG YD+KLGNLMDYYGIKT
Sbjct: 953  KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 1012

Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411
            E+EIL+GSIMK S+ F +R+DA+AIG AVRAL+KEAR WF  K+G++     DD YAKAS
Sbjct: 1013 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE---DDAYAKAS 1069

Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591
            AWYHVTYH  YWGCYN G++RDHFLSFPWCVY++L+ IK+DK S   +   +LE QFR G
Sbjct: 1070 AWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAF-PALEQQFRQG 1128

Query: 3592 LRL 3600
            LR+
Sbjct: 1129 LRM 1131


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1528 bits (3957), Expect = 0.0
 Identities = 774/1140 (67%), Positives = 907/1140 (79%), Gaps = 1/1140 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            M +TIQV GFPS VSA+ +K FLE YTGEGT+ AL+++QP++  S   + A VQFTS E 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I +L  ++++YG +YLK  EM  DI+PKPR  + S++   LHFGCQ+S+E+F  LWK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
             ++  +  G GLRK  F L+H   EYKL+LSY++IWQIQL+HPR ++  TKFLLIQ+  A
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQI--TKFLLIQLLGA 176

Query: 724  PRIFEKPLCSSGDIYGDPAFNY-FRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
            P+I+EK +         P  +Y F++ PDDQWVR  DFT S  IGQS A+CLEL Y  +L
Sbjct: 177  PQIYEKDV---------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL 227

Query: 901  PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080
            P  RENF  YKE++G+F+LESGS++SH + LVPI+ PP QG  LP+ ILFKIN+LVQNG 
Sbjct: 228  PNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPP-QGSSLPFQILFKINTLVQNGC 286

Query: 1081 LSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260
            LSGPTLD++FFRLV P   P+  IE ALEKL H K+ CYEPV+WL EQY  Y+  K    
Sbjct: 287  LSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAG 345

Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440
            S  ISLD GLVYVRRVQ+TP KVYFCGPEVNVSNRV+R+Y   IDNF+RVSF+DE+ EK+
Sbjct: 346  SPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKI 405

Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620
             ST +SPR+  +++ + T +Y+RILS L+NGI+IG+KKF+ LAFSSSQLRDNS WMFA  
Sbjct: 406  HSTVISPRM--SKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463

Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800
             G+TAA IR WMG+F  IRNVAKYAAR GQSFSSS ETL V + EI+  IPD++I +  T
Sbjct: 464  PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEIHKGRT 522

Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980
             YVFSDGIGKIS + A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM
Sbjct: 523  TYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSM 582

Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160
             KY S+NT+LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+
Sbjct: 583  FKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPV 642

Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340
             AQEALE+MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNG
Sbjct: 643  AAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNG 702

Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
            RSMMGCLDETRTLEYG+VFVQ+S  G RQ   +    R        + I+ GK++VAKNP
Sbjct: 703  RSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNP 761

Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
            CLHPGDVRVL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP 
Sbjct: 762  CLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPP 821

Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
            +Q+ PMDYTPA + +LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE  KA  + 
Sbjct: 822  QQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDP 881

Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
            C ELA LFSIAVDFPKTGVPAEIP +L VKE+PDFMEK DKPTYES  VIGKLFREVKDI
Sbjct: 882  CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDI 941

Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
            AP    I+SFT++VAR SYD DMEV GFEDY+ +AFYYK EYD+KLGNLMDYYGIKTESE
Sbjct: 942  APHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESE 1001

Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420
            ILSGSIM+ S+ FDRRKDA+AIG AV++L+KEARTWF+ K G+E  S+ DD+YAKASAWY
Sbjct: 1002 ILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDSEADDVYAKASAWY 1060

Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600
            HVTYH  YWGCYN+G+DRDHFLSFPWCVY+KLI+ KR K S +     SLE +   GLRL
Sbjct: 1061 HVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1527 bits (3954), Expect = 0.0
 Identities = 765/1142 (66%), Positives = 909/1142 (79%), Gaps = 2/1142 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            M +T++VSGFPSS +A  V+VFLE++TG GTV ALK+R+ +T     R +A+VQFT+  +
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRT--GGARKYAIVQFTTTRA 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AEQI SL N RL+YG SYL    M RDI+P+PR+ + ++E   LHFG Q S+EKFS++W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
            G +  +N G G+RKL F L+H   EYKL+L +++IWQI+L  PR +  + K+LLIQ+  A
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQ--TVKYLLIQLYGA 176

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+E+ + SS +++ DP  NYFRD PD+QWVR TDFT S  IG SS++CLEL  + +LP
Sbjct: 177  PRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP 236

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
               ENF  YKE+EG F+LESG TFS   DLVPIV P   G  LPY+ILF++N LVQNG L
Sbjct: 237  NFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPS-SGVNLPYNILFRVNLLVQNGCL 295

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
            +G  LD  F+RLV P+ +PV  IE ALEKL H K+ CYEP KW  EQY KYLTS + PRS
Sbjct: 296  AGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRS 355

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
              +SLD GLVYV +VQ+TP KV+FCGPEVNVSNRV+R YR  IDNF+RVSFVDE+ EK+ 
Sbjct: 356  PVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIH 415

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            STD+SPR  +  + + T +Y RILSTL+NGI+IG+KKFE LAFSSSQLR+NS WMFA   
Sbjct: 416  STDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRL 475

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
            G+TAA IR WMG+F  IRNVA+YAAR GQSF SS ETL+V  HEI+  IPD+++ R GT 
Sbjct: 476  GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEI-IPDIEVSRGGTR 534

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            Y+FSDGIGKIS+EFAR+VAIKCG K  TPSAFQIRY GYKGVVAVDPTS KKLSLR+SM 
Sbjct: 535  YLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMF 594

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY SENT LDVL  SK+QPCFLNRQLITLLSTLGV D  FE+KQ+EAVDQLD +LTDPLR
Sbjct: 595  KYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLR 654

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR KTRIF PNGR
Sbjct: 655  AQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 714

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
            SMMGCLDETRTLE+GQVFV+ S +  R  + +            +  +I G V+VAKNPC
Sbjct: 715  SMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR--GQCYLIKGSVVVAKNPC 772

Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
            LHPGD+R+L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +
Sbjct: 773  LHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQ 832

Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
            Q+ PMDYTP   + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA ADKE LKA S  C
Sbjct: 833  QISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPC 892

Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
            +ELA  FSIAVDFPKTGVPAEIPS+L  +E+PDFMEK DKP+YES  VIGKLFREVKDIA
Sbjct: 893  VELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIA 952

Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
            P+ S I+SFT +VAR  YD DMEVDGFEDYID+AFYYK  YD+KLGNLM+YYGIKTE+E+
Sbjct: 953  PRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAEL 1012

Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
            LSGS MK S+ F +++DA+AIG AVR+LKKEAR+WF+ K G+ L SQ DD+ AKASAWYH
Sbjct: 1013 LSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEK-GSGLDSQADDVDAKASAWYH 1071

Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSK-KRSL-NQSLENQFRFGLR 3597
            VTYH  YWGCYN+G++RDHFLSFPWCVY+KLI IKR  +++ +RSL   S+E QF  GL 
Sbjct: 1072 VTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLH 1131

Query: 3598 LS 3603
            LS
Sbjct: 1132 LS 1133


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 1522 bits (3941), Expect = 0.0
 Identities = 766/1139 (67%), Positives = 905/1139 (79%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQVS FPS+V AE VK FLE YTG+ TVYALK+RQ K   +  R++A+VQFT    
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQK---NGGRAYAIVQFTKSTD 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I  L NQRLYYG+SYLK  EM+ DIVPKPRT + ++E   LHFGCQ+S EKF  LW+
Sbjct: 58   AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
             +D  +N G G+RKL+FLL+H  +EY+LDL Y++IWQI+L  PR++  ++K+LLIQ+  A
Sbjct: 118  EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQ--TSKYLLIQLFGA 175

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+EK + SSG ++ +P  NYF D PDDQWVR TDFT SSCIGQSS +CLEL Y  +LP
Sbjct: 176  PRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP 235

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
              RENF  YKE EG+F+LESGS++S  ++LVPIV P   G +LPY+ILFKIN LVQNG +
Sbjct: 236  NFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPS-LGIDLPYEILFKINLLVQNGCI 294

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
             GP LD+ F+RLV+P  I   +I+ ALEKL + K+ C+EP KWL EQY  Y+ SK  P S
Sbjct: 295  PGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGS 354

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
              ISLDDGLV VRRVQ+TPS+VYFCGPE+NVSNRV+RH+   IDNF+R++FVDE+ EK+ 
Sbjct: 355  PVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIH 414

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            STDL  R       + T++Y RILSTLKNGI+IG+K+FE LAFSSSQLR+NS WMFA   
Sbjct: 415  STDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASRE 468

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
            G+TAA IR WMG F  IRNVAKYAAR GQSFSSS ETL+V + EI+  I DV+I+RDG  
Sbjct: 469  GLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEI-IDDVEIKRDGIN 527

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            YVFSDGIGKIS++FA++VA KC +   TPSAFQIR GG+KGVVAVDPTS KKLSLR SMS
Sbjct: 528  YVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMS 587

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D  FE+KQ+E VDQL+ ILTDPL+
Sbjct: 588  KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLK 647

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR K+RIF  NGR
Sbjct: 648  AQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGR 707

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
            SMMGCLDETRTL+YGQVFVQVS  G R                ++  I+ GKV+VAKNPC
Sbjct: 708  SMMGCLDETRTLDYGQVFVQVS--GSRS---------------EQRFIVQGKVVVAKNPC 750

Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
            LHPGDVRVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +
Sbjct: 751  LHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSK 810

Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
            Q+ PMDY+PA +  L+H+VTIEEV+EYFTNYIVNDSLGIIANAHT FAD+EP KA S+ C
Sbjct: 811  QIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSEC 870

Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
              LA LFSIAVDFPKTGVPAEIP  L VKE+PDFMEK DKPTY+S+ VIGKLFREVKD+A
Sbjct: 871  KWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLA 930

Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
            P    I+S T+E     YD DMEVDG+EDY+D+AFY+K  YD+KLGNLM+YYGIKTE+EI
Sbjct: 931  PNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEI 990

Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
            LSG IMK SR F +++DA+AIG AVR+L+KEAR+WF+ K G  L S+ DDLYAKASAWYH
Sbjct: 991  LSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEK-GNGLDSEADDLYAKASAWYH 1049

Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600
            VTYH  YWG YN+G++R+HFLSFPWCVY+KLI IK+   S++ S   SLE+ F  GLRL
Sbjct: 1050 VTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1493 bits (3865), Expect = 0.0
 Identities = 761/1141 (66%), Positives = 893/1141 (78%), Gaps = 2/1141 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQ+SGFPS VSAE+VK FLE +TG GTVYA+K+R  K   S  RS+A+VQF + E+
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGS--RSYAIVQFMTVET 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I  L N RL+YG SYL    M+RDIVPKPR  + SL+   LHFGCQIS+EKFS LW+
Sbjct: 59   AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              +  ++ G GLR+L F LT+  +EY+L L Y+++WQI+L  PR +  + K+LLIQ+  A
Sbjct: 119  VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQ--TAKYLLIQLLGA 176

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PR++EK +  S DI  +P FNYF+DTPDDQWVRATDFT S CIG SSA+ LEL Y   LP
Sbjct: 177  PRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP 236

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
             +RENF  YKE E RF+LESGS+FS  +DLVPIV PP  G  LP++ +FKIN L+QNG L
Sbjct: 237  DLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPP-SGINLPFETVFKINMLLQNGCL 295

Query: 1084 SGPTLDSTFFRLVHPSNIP-VHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260
            SGPTLD  F+RLV P  I  V  I  ALEKL + K+  YEP  WL EQY KYLT+   P+
Sbjct: 296  SGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPK 355

Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440
               I+LD GLVYVRRVQVTPSKVYFCGPE+NVSNRV+R Y   ID F+RVSFVDE+ EK+
Sbjct: 356  PPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415

Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620
             STDLSPR     + + T +Y+RILS L+NGI IG++KFE LAFSSSQLRDNSLWMFA  
Sbjct: 416  FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475

Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800
            +G +A  IR+W+G+FR IRNVAKYAAR GQSF SS ETLTV   E +  I D++IER   
Sbjct: 476  DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEV-ISDIEIERGAV 534

Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980
            +YVFSDGIGKISS FA+RVA KCG+K   PSAFQIRY GYKGVVAVDPTS  KLSLRKSM
Sbjct: 535  KYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSM 594

Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160
             KY SE   LDVL +SK Q C+LNRQLITLLSTLGV DR+FEKKQ+EAV QL+ IL DPL
Sbjct: 595  WKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPL 654

Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340
            RA+EAL++MS GE  N+LKE+L CGY+P+AEPFLSMMLQ FRASKL ELR KTRI  P+G
Sbjct: 655  RAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDG 714

Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
            R+MMGCLDE RTLEYG+VFVQ S   HR F  + F +        ++ I++G+V+VAKNP
Sbjct: 715  RAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGS--GQNYIVVGRVVVAKNP 772

Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
            CLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP+
Sbjct: 773  CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832

Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
            +Q +PMDY+PA +  LDHDV IEEVQEYFTNYIVNDSLGIIANAHTAFADKEP KA S +
Sbjct: 833  KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPS 892

Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
            CIELA LFSIAVDFPKTGVPA IP  L+VKE+PDFMEKL+KPTYES  VIGKLFREVKDI
Sbjct: 893  CIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDI 952

Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
            AP    +  FTKEVA  SYD DME DGFEDYID+AFYYK  YD+KLGNL+DYYGIK+E+E
Sbjct: 953  APNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAE 1012

Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420
            I+ GSIM+ S+ F +R+DA++I  AVRAL+KEARTWF+ K G+ L S  DD+YAKASAWY
Sbjct: 1013 IIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEK-GSSLDSAADDVYAKASAWY 1071

Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLR 3597
            +VTYH  YWGCYN+G++RDH+LSFPWCVY+KL+ IKR K S +RSL   SLE  F   L 
Sbjct: 1072 YVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLH 1131

Query: 3598 L 3600
            L
Sbjct: 1132 L 1132


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1489 bits (3856), Expect = 0.0
 Identities = 749/1140 (65%), Positives = 898/1140 (78%), Gaps = 1/1140 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GF S VSA  VK FLE YTG  TVYALK+RQ K    + R+FA+VQFT    
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            A  I  L NQRLYYG SYLK  EM+ DIVPKPR  + ++E   ++FGCQ+SEEKF  LWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              +  LN G G+RKLEFLL++C  +YKL+L Y++IWQI+LR P S+  ++K LLIQ+  A
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+EK + +S  ++ DP  NYF+D PDDQWVR TDFT S+CIGQSS + LEL +N +LP
Sbjct: 176  PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP 235

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
              RENF  YKE+EGR +LESGS++S  + LVPIV  P +  +LP++ILFK+N LVQNG +
Sbjct: 236  NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
             GP LD TF+RLV P  +   +I+ ALEKL + ++ CYEP +WL E+Y  +  S+    S
Sbjct: 295  PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
             TISLD+GLVYVRRVQ+TPS+VYFCGPE+NVSNRV+R +   IDNF+R+SFVDE+ EK+ 
Sbjct: 355  PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            ST++  R       + T +YKRILSTL+NGI+IG K+FE LAFSSSQLR+NS WMFA   
Sbjct: 415  STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
            G+TAA IR WMGNF  IRNVAKYAAR GQSFSSS ETL+V + EI+  IPD++I +DG +
Sbjct: 469  GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIK 527

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            YVFSDGIGKIS+EFA++VA KC +K  TPSAFQIR GG+KGVVA+DPTS  KLSLRKSM 
Sbjct: 528  YVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSME 587

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV DR FEKKQ+E VDQL+ +LTDPL 
Sbjct: 588  KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLE 647

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF   GR
Sbjct: 648  AQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGR 707

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
            SMMGCLDETRTL YGQVFVQ S  G R                +R  I+ GKVIVAKNPC
Sbjct: 708  SMMGCLDETRTLNYGQVFVQFS--GSRS---------------ERRFIVQGKVIVAKNPC 750

Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
            LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +
Sbjct: 751  LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810

Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
            Q+ PMDY+PA +  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S  C
Sbjct: 811  QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPC 870

Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
            +ELA LFSIAVDFPKTGVPAEIP  L VKE+PDFMEK DKP+Y+SH VIGKLFREVK++A
Sbjct: 871  LELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLA 930

Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
            P    IK  T+E  +  YD DMEV+GFEDYID+AF++K +YD+KLGNLMDYYG+KTE+EI
Sbjct: 931  PNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEI 990

Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
            L G IMK SR F +++DA+AI  AVR+L+KEAR+WF+ K G+EL  + DD YAKASAWY+
Sbjct: 991  LGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYY 1049

Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLRL 3600
            VTYH  YWG YN+G++RDHFLSFPWCVY+KLI IK++K + + +L+  SLE++F+ GL L
Sbjct: 1050 VTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1484 bits (3842), Expect = 0.0
 Identities = 767/1130 (67%), Positives = 900/1130 (79%), Gaps = 1/1130 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV G PS+VSA  +K FLE YTGEGT+ AL+++QPK+  S   + A VQFTS   
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I SL  Q L+YG +YLK  EM  DI+PKPRT + S++   LHFG Q+S E+F  LWK
Sbjct: 59   AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
             ++  +  GFGLRK  F L+H   EYKL+LS ++IWQIQLR PR +  +TKFLLIQ+  A
Sbjct: 118  AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQ--NTKFLLIQLLDA 175

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            P+I+EK +          A +YF++TPDDQWVR  DFT S  IGQSSA+CLEL +  +LP
Sbjct: 176  PQIYEKDVS---------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP 226

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
               ENF  YKE++ +F+LESG++FS  + LVPIV PP QG  LP+ ILFKIN+LVQNG L
Sbjct: 227  NFCENFARYKENDRKFILESGASFSGNLHLVPIVGPP-QGSNLPFKILFKINTLVQNGCL 285

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
            SGPTLD+ FFR V P  I +  IE ALEKL + ++ CYEPV+WL EQY  Y+ SK    S
Sbjct: 286  SGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGS 344

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
              ISLD GLVYVRRVQ+TP KVYFCGPEVNVSNRV+R+Y   IDNF+RVSF+DE+ EK+ 
Sbjct: 345  PAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIH 404

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            ST +SPR ++NE ++ T +Y+RILS L+NGI+IG+KKF+ LA SSSQLRDNS WMFA   
Sbjct: 405  STVISPR-MSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRP 462

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
            G+TAA IR  MG+F  IRNVAKYAAR GQSFSSS ETL V +HEI+  IPD++  RDGT 
Sbjct: 463  GLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIETHRDGTT 521

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            YVFSDGIGKIS+E A RVAIKCG K+STPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM 
Sbjct: 522  YVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 581

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY SENT+LDVL+WSK++PCFLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLR
Sbjct: 582  KYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLR 641

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGR
Sbjct: 642  AQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 701

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQ-FHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
            SMMGCLDETRTLEYG+VFVQ+S  G RQ F  +  F  + +  D  + I+ GKV+VAKNP
Sbjct: 702  SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNP 759

Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
            CLHPGDVR+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP 
Sbjct: 760  CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819

Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
            RQ+ PMDYTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE  KA    
Sbjct: 820  RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879

Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
            C ELA LFSIA++FPKTGVPAEIP HLHVKE+PDFMEK +KPTYES  VIGKLFREVKD+
Sbjct: 880  CKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939

Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
            AP    ++SFT++VA  SYD+DMEVDGFEDY+ +AFYYK +YDFKLG+LMD  GI+TESE
Sbjct: 940  APHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESE 999

Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420
            ILSGSIMK S+ FD+RKDA+AI  AVR+L+KEARTWF+ K G+   +  DD+YA ASAWY
Sbjct: 1000 ILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN-KMGSGTYAGADDVYAIASAWY 1058

Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSL 3570
            HVTYH  YWGCYN+G+  DHFLSFPWCVY+KLI IKRDK S  RSL+ SL
Sbjct: 1059 HVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS-IRSLHLSL 1107


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1482 bits (3837), Expect = 0.0
 Identities = 745/1140 (65%), Positives = 894/1140 (78%), Gaps = 1/1140 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GF S VSA  VK FLE YTG  TVYALK+RQ K    + R+FA+VQFT    
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            A  I  L NQRLYYG SYLK  EM+ DIVPKPR  + ++E   ++F C +SEEKF  LWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              +  LN G G+RKLEFLL++C  +YKL+L Y++IWQI+LR P S+  ++K LLIQ+  A
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+EK + +S  ++ DP  NYF+D PDDQWVR TDFT S+CIGQSS +CLEL +N +LP
Sbjct: 176  PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP 235

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
              RENF  YKE+EGR +LESGS++S  + LVPIV  P +  +LP++ILFK+N LVQNG +
Sbjct: 236  NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
             GP LD TF+RLV P  +   +I+ ALEKL + ++ CYEP +WL E+Y  +  S+    S
Sbjct: 295  PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
             TISLD+GLVYVRRVQ+TPS+VYFCGPE+NVSNRV+R +   IDNF+R+SFVDE+ EK+ 
Sbjct: 355  PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            ST++  R       + T +YKRILSTL+NGI+IG K+FE LAFSSSQLR+NS WMFA   
Sbjct: 415  STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
            G+TAA IR WMGNF  IRNVAKYAAR GQSFSSS ETL+V + EI+  IPD++I +DG +
Sbjct: 469  GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIK 527

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            YVF DGIGKIS+EFA++VA KC +K  TPSAFQIR GG+KGVVA+DPTS  KLSLRKSM 
Sbjct: 528  YVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSME 587

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D  FEKKQ+E VDQL+ +LTDPL 
Sbjct: 588  KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLE 647

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF   GR
Sbjct: 648  AQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGR 707

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
            SMMGCLDETRTL YGQVFVQ S  G R                +R  I+ GKVIVAKNPC
Sbjct: 708  SMMGCLDETRTLNYGQVFVQFS--GSRS---------------ERRFIVQGKVIVAKNPC 750

Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
            LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +
Sbjct: 751  LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810

Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
            Q+ PMDY+PA +  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S  C
Sbjct: 811  QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPC 870

Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
            +ELA LFSIAVDFPKTGVPAEIP  L VKEFPDFMEK DKP+Y+S+ VIGKLFREVK++A
Sbjct: 871  LELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLA 930

Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
            P    IK  T+E  +  YD DMEV+GF DYID+AF+YK +YD+KLGNLMDYYG+KTE+EI
Sbjct: 931  PNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEI 990

Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
            LSG IMK SR F +++DA++I  AVR+L+KEAR+WF+ K G+EL  + DD YAKASAWY+
Sbjct: 991  LSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYY 1049

Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLRL 3600
            VTYH  YWG YN+G++RDHFLSFPWCVY+KLI IK++K + + +L+  SLE++F+ G  L
Sbjct: 1050 VTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score = 1458 bits (3774), Expect = 0.0
 Identities = 747/1139 (65%), Positives = 882/1139 (77%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MGRTIQV GFP  V+AE VK FLENYTGEGTV AL+++  K  R   R++A VQFT+   
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGR---RAYARVQFTNIRC 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I  L   RLYYGTSYLK  E   DIV  PRT    +E   L+FGCQIS  KFS LWK
Sbjct: 58   AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
            G    +  G G++K+ F L H  +EYK+ LSY++IWQI L +   +  S+K L+IQ+  A
Sbjct: 118  GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQ--SSKLLVIQLFGA 175

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI++K    SG +Y     +YF  T DDQWVR TDFT  S IGQSS++CL+L Y  +LP
Sbjct: 176  PRIYKK---LSGSVY-----SYFMVTQDDQWVRTTDFT-QSLIGQSSSLCLQLPYGMRLP 226

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
              R+NF  YKE E  F LE+G  FSH  DLVPIV PP   + LPY +LFK+ SLVQ G L
Sbjct: 227  NFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIK-LPYTLLFKVCSLVQTGCL 285

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
             GP LD +FF LV+P+   + +IE ALEKL + K+ CY P  WL+EQY +Y TSK  P+S
Sbjct: 286  PGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKS 345

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
              I LDDGLVYV RVQVTP++VYF GPEVNVSNRV+RHYR  IDNF+RVSFVDE+W+KM 
Sbjct: 346  PAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMY 405

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            STDLSPRV   ++ K T LY+R++S L++G+ IG++KF+ LAFSSSQLRDNSLWMFAP +
Sbjct: 406  STDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTD 465

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
            G+ A  IREWMG+F  IRNVAKYAAR GQSF SS ETL+V + EI+  I DVK   +GTE
Sbjct: 466  GLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEE-IQDVK---NGTE 521

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            Y FSDGIGKIS +FAR+VA KCG++SSTPSAFQIRYGGYKGVVAVDP+S KKLSLR SM 
Sbjct: 522  YTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSML 581

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY+S+NT LDVL WSK+QPCFLNRQ+ITLLSTLGV+D +FEK+Q+EAV QLD +L DP+R
Sbjct: 582  KYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMR 641

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            AQEAL++MSPGEN ++LKEMLKCGY+PD EPFLSMMLQTFRASKLL+LR K R+F P  R
Sbjct: 642  AQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKAR 701

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
             MMGCLDET  L+YGQVFV+ S A  R    + +     NE   R   + GKV+VAKNPC
Sbjct: 702  QMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANE---RFDPVRGKVVVAKNPC 758

Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
            LHPGDVRVL AV+VP L+HMVDCVVFP+ GKRPHPNECSGSDLDGDIYFV WD +LIP +
Sbjct: 759  LHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTK 818

Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
            QV+PMDY PA +  LDHDVTIEEV++YFTNYIVNDSLGIIANAHT FADKEPL A S  C
Sbjct: 819  QVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPC 878

Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
            +ELA LFSIAVDF KTG+PAEIP HL VKE+PDFMEK DK  Y S RVIGKLFREVKDIA
Sbjct: 879  LELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIA 938

Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
            PQ S  +SFTKEVAR SYD DMEVDGFED+IDEAF +K EYD+KLGNLM+YYG+KTE+E+
Sbjct: 939  PQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEV 998

Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
            LSG IMK S+ FDRRKDA+AIGAAVR+L+ EAR+WF  K GTE     DD+YAKASAWY+
Sbjct: 999  LSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF--KKGTE----ADDVYAKASAWYY 1052

Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600
            VTYH  Y+GCYN+G+ RDH+LSFPWCVY+KL+ IK+D NS++ S   SL  QF   +R+
Sbjct: 1053 VTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKD-NSRRASQMASLRRQFNDRVRI 1110


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1452 bits (3760), Expect = 0.0
 Identities = 746/1145 (65%), Positives = 892/1145 (77%), Gaps = 5/1145 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TI++ GFP+SV+   VK F+E YTGEGTV+A+KLR  K     PR+FA++QFT+  S
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRV--PRAFAIIQFTTANS 58

Query: 364  AEQISSLIN---QRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSS 534
            A  + S  N   + L YGTSYLK  EM+RDIVP+PR  + SL+   L FGCQIS+ +FS 
Sbjct: 59   ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118

Query: 535  LWKGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQV 714
            LWK  D I+N G G+RK+ FL +H +++YKL+LSY++IW+I+L  PR+   +T++LLIQ+
Sbjct: 119  LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNE--TTRYLLIQL 176

Query: 715  STAPRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNC 894
              APR+FE  + +S +I+ DP FN+F+D PD+QW+RA DFT  S IGQSSAICLEL    
Sbjct: 177  LGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGR 236

Query: 895  KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074
            +LP  RENF  Y+E E ++ L++G  FS    LVPIV PP  G ++ YDILFK+NSLVQ+
Sbjct: 237  QLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPP-LGVKISYDILFKVNSLVQH 295

Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
              L+GP LD  F+RLV P  +P   IE ALEK+ +SK+ CYEP KWL +QY  YL SK+ 
Sbjct: 296  ACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNH 355

Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
            PRS  ISLD GLVYVRRVQ+TP KVYFCGPE+NVSNRV+RH+R  IDNF+RVSFVDE+ +
Sbjct: 356  PRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELD 415

Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
            K+ STDLS R       K T++Y RILS LKNGI++G+KKFE LAFSSSQLR+NSLWMFA
Sbjct: 416  KLFSTDLSSR----SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471

Query: 1615 PWN-GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVK-IE 1788
            P   G TAA IR+WMGNF  IRNVAKYAAR GQSF SS ETL+V R E++  IPDVK + 
Sbjct: 472  PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEI-IPDVKKLT 530

Query: 1789 RDGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSL 1968
             DG EYVFSDGIGKIS EFA++VA KCG    TPSAFQIRYGGYKGVVAVDP S  KLSL
Sbjct: 531  YDGNEYVFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPKSCYKLSL 589

Query: 1969 RKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMIL 2148
            RKSM KY S+NT LDVL  SKFQPC+LNRQLI+LLSTLG++D +FEKKQ+E V+QL+ IL
Sbjct: 590  RKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTIL 649

Query: 2149 TDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIF 2328
            TD L+AQE L++MS GE  NVLKEML CGYKP+ EPFLSMMLQTFRASKLLELR K+RIF
Sbjct: 650  TDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIF 709

Query: 2329 EPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIV 2508
             P GR+MMGCLDETRTLEYGQVFVQ S     Q  ++ FF  +      ++ ++ GKV+V
Sbjct: 710  IPKGRAMMGCLDETRTLEYGQVFVQFS-NNRLQNLSDDFFSYDL----PKNYMVKGKVVV 764

Query: 2509 AKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPE 2688
            AKNPCLHPGDVRVLQAV+VP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD E
Sbjct: 765  AKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHE 824

Query: 2689 LIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 2868
            LIP R + PMDYT   +V LDHDV IEEV+EYF NYIVNDSLGIIANAHT FADKE LKA
Sbjct: 825  LIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKA 884

Query: 2869 ESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFRE 3048
             S+ C++LA LFS AVDFPKTGVPA IP  LHVKE+PDFMEK DKPTY+SH VIGKLFRE
Sbjct: 885  MSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFRE 944

Query: 3049 VKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIK 3228
            VK+I+  A  I SFTK VAR SYD +MEVDGF DY+D+AFY+K  YD+KLGNLMDYYGIK
Sbjct: 945  VKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIK 1004

Query: 3229 TESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKA 3408
            TE+EIL G+IMK S+ F++R+DA+AI  AVR+L+KEAR WF+  +  ++ S   D+YAKA
Sbjct: 1005 TEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKA 1064

Query: 3409 SAWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRF 3588
            SAWYHVTYH  YWGCYN+G++RDH+LSF WCVY  L+ IK++K S +RS   SLE  F  
Sbjct: 1065 SAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRS---SLEYSFS- 1120

Query: 3589 GLRLS 3603
            GLRLS
Sbjct: 1121 GLRLS 1125


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score = 1446 bits (3744), Expect = 0.0
 Identities = 734/1138 (64%), Positives = 885/1138 (77%), Gaps = 2/1138 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TI +SGFPS V+A+ VK FLE +TG GTVYA+K+R PK  R   R +A+VQFTS   
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPK--RGGGRLYAIVQFTSATQ 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I SL NQRL+YG+SYLK    + DIVPKPRT M +LE   L FGCQ+S EKF  LW+
Sbjct: 59   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
            G   ++  G G+RK+ F L +  +EY+L+LSY+ IWQIQL  PR +  S K+LLIQ+S A
Sbjct: 119  GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQ--SMKYLLIQLSGA 176

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI++K   +SG I+ +P  N+F++  DDQWVR TDFT+S  IGQSS++CL+L    +LP
Sbjct: 177  PRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLP 236

Query: 904  GIRENFHNYKEDEGRF-LLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080
              ++NF  Y+E E  F L++  + FS   DL PIV+   +   LPY ILFKIN+LVQ G 
Sbjct: 237  PFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS--RSHVLPYKILFKINALVQYGC 294

Query: 1081 LSGPTLDSTFFRLVHPS-NIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
            +  P LD++F+RLV       +  +E ALEKL H K+  Y+P  +L EQY KY  S+H P
Sbjct: 295  IPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPP 352

Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
             S  ISLDDGLVYVRRVQ+TP KV+FCGPEVNVSNRV+RH+   IDNF+RVSFVDE+W+K
Sbjct: 353  NSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDK 412

Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
            MRSTDL PR+ +  +   TD+Y+RILS LKNGI+IG+K F+ LAFSSSQLRDNSLWMFA 
Sbjct: 413  MRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFAS 472

Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
               I AA IR WMG+FR I+N AKYAAR GQSF SS E L+V  +E +  IPD+++++  
Sbjct: 473  GPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGE 531

Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
             +YVFSDGIGKISS+FA+ VA KCG ++  PSAFQIRYGGYKGVVAVDP S  KLSLRKS
Sbjct: 532  IKYVFSDGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKS 590

Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
            M K+ S+NT LDVL  SK+QPCFLNRQLITL+STLGV D IFEKKQ EAV+QLD ILTDP
Sbjct: 591  MCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDP 650

Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
            L+AQEALE+MSPGEN N+LKEMLKCGY+PD EP+LSMMLQTFRASKLLELR K+RIF PN
Sbjct: 651  LKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPN 710

Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517
            GR+MMGCLDETRTLEYGQVFVQ+S   HR    +  F R   E     L+I G V VAKN
Sbjct: 711  GRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGRE---HHLVIEGNVTVAKN 767

Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697
            PCLHPGDVRVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP
Sbjct: 768  PCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP 827

Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877
             RQ+ PMDYTPA    LD DVT E++QEYF NY+VNDSLGIIANAHTAFADKE  KA S+
Sbjct: 828  SRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSS 887

Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057
             C+ELA LFS+AVDFPKTGVPA IPSHL+VKEFPDFMEK D+P+YES++VIGKLFR VKD
Sbjct: 888  PCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKD 947

Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237
            IAP  S I+SFT++VAR  YD DMEV+GFEDY+++AFY+K  YD+KLGNL+DYYGIK+E+
Sbjct: 948  IAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEA 1007

Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417
            E+LSGSIM+ S+ F RR+DA+AI  AVR+L+KEARTWF+ + G +  S  DDL+AKASAW
Sbjct: 1008 EVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGAD--SNSDDLFAKASAW 1065

Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591
            Y+VTYH  YWGCYN+G+ RDH+LSFPWCVY+KL+ IK + N ++R     L +  RFG
Sbjct: 1066 YYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIK-ENNLRRRERAARLASFDRFG 1122


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1442 bits (3734), Expect = 0.0
 Identities = 744/1140 (65%), Positives = 890/1140 (78%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQ+ GFPS  +AE +K FLE +TGEG+V+ALKLR  K   S  R +A++QF S   
Sbjct: 1    MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAK---SGGRFYAIIQFQSISQ 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE+I SL N RL+YG SYL       DIVPKPRT + SL    LH GCQ++++KFS LW 
Sbjct: 58   AEKIISLANARLWYGRSYLNA-RPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              +  ++ GFG+R L+F L +    Y+L LSY++IWQI+L H R R  S K+L+IQ+   
Sbjct: 117  TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGR--SAKYLVIQLYGN 174

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+++ +CSSG   G    NYFRD PDD WVR TDFT  SCIGQSS++CL L+ + +LP
Sbjct: 175  PRIYQQEVCSSGG-NGYEDMNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELP 231

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083
               ENF  YK+ +G+F+LE+GSTFS   DLVPIV  P  G +LPYDILFKIN LVQ G L
Sbjct: 232  DFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPA-GIDLPYDILFKINLLVQQGCL 290

Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263
            SGPTLD+ F+RLV P  I    IE AL+KLS+ K+SCYEP  WL E+Y KY+ SK  P+ 
Sbjct: 291  SGPTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKP 350

Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443
            + ISLD GLVYVRRVQ+TPSKVYF GPEVNVSNR++R Y   IDNF+RVSFVDE+ EK+ 
Sbjct: 351  ALISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLY 410

Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623
            STDLSPR  T +    T +Y R+LS L++GI++G+KKFE LAFSSSQLR+NSLWMFAP +
Sbjct: 411  STDLSPRTSTRK----TRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTD 466

Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803
              +A  IR  MG+FR IRNVAKYAAR GQSF SS ETL+V R+E++  IPDV +   G +
Sbjct: 467  EDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEV-IPDVTVNSCGIK 525

Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983
            YVFSDGIGKIS++FA RVA KCG K+ TPSAFQIRYGGYKGVVAVDPTS  KLSLRKSMS
Sbjct: 526  YVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMS 585

Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163
            KY SENT LDVL  SK+QPCFLNRQLITLLSTL V+D +F KKQ+ AV QL+ ILTDPL+
Sbjct: 586  KYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLK 645

Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343
            A+EAL++MS GE+ NVLKE+L CGYKP+ EPFLSMMLQTFRASKLLELR KTRIF P+GR
Sbjct: 646  AEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGR 705

Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523
            +MMGCLDETRTLEYGQVFVQ S    RQ   +   I   + LD    II GKV+VAKNPC
Sbjct: 706  AMMGCLDETRTLEYGQVFVQFSGKRRRQLFDD---ICIHSSLDS-CFIIEGKVVVAKNPC 761

Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703
            LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +
Sbjct: 762  LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPK 821

Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883
            Q++PMDYTPA  + +D DVTIEEV+EYF NYIVNDSLGIIANAHT FAD +  KA S+ C
Sbjct: 822  QIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPC 881

Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063
            ++LA LFSIAVDFPKTGVPAEIP  L+ KE+PDFMEK DK TY SH VIG+LFREVKDIA
Sbjct: 882  LQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIA 941

Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243
            P  S I SFT++VA   YD DMEVDGFEDY+++AFY+KG YD+KLGN++DYYGIKTE+EI
Sbjct: 942  PHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEI 1001

Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423
            LSGSIM  S+ F +R+DADAI  AV++L+KEAR WF+ K+ T + S  DD+YAKASAWYH
Sbjct: 1002 LSGSIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKD-TGIDSGDDDVYAKASAWYH 1060

Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRLS 3603
            VTYH  Y+G YN+G++R HF+SFPWCV++KL +IK++K ++ R L  SLEN+ R+GLR S
Sbjct: 1061 VTYHPNYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQAR-LISSLENRLRYGLRFS 1119


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 1426 bits (3692), Expect = 0.0
 Identities = 725/1141 (63%), Positives = 871/1141 (76%), Gaps = 12/1141 (1%)
 Frame = +1

Query: 187  GRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPESA 366
            GRT+QVSGFP    AE VK FLE+ TG GTVY LK+R  K+ + N R FA+VQFT+ +SA
Sbjct: 75   GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKS-KPNSRVFAIVQFTTSKSA 133

Query: 367  EQISSLINQ--RLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
            E I SL  Q   LY+G SY+ V  M+ DIVP PR     LE   L+FG QISEE F+ LW
Sbjct: 134  EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193

Query: 541  KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
               +  +  GFGL+K+ F L H  ++YKLDL Y++IWQIQLR P +    T++L++Q+  
Sbjct: 194  SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTE--GTRYLVLQMQG 251

Query: 721  APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
            APRIF+KPL  S DIY  P FNY++D PD+QWVR+ DFT S  IGQSS++CL L    ++
Sbjct: 252  APRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI 311

Query: 901  PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080
            P IRENF  YKE  G F L++GS+FSH + LVPIV PP Q + LPY ILF++NSLVQNG+
Sbjct: 312  PNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIK-LPYKILFRVNSLVQNGF 370

Query: 1081 LSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260
            L GPTLD+ F+ L++   +P   +ER+LE +S   + C EP KWL+EQY KY      P 
Sbjct: 371  LVGPTLDTEFYNLLN--GLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPS 428

Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440
             + ISL+ GLVYV RVQVTPSKVYF GPEVNVSNRV+R +   IDNF+R+SF+DED+  +
Sbjct: 429  PAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSI 488

Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620
            RSTDLS R+ +  ++KHT +Y R+LSTLKNGI+IG+KKFE LAFSSSQLRDNS WMF+P 
Sbjct: 489  RSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPI 548

Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800
            +GITAA IR+WMG+F  IRNVAK AAR GQSF SS ETL V   E++  I D+K      
Sbjct: 549  DGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVER-ISDIK----NG 603

Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980
            +YVFSDGIGKIS EFA++VA+KCG    TPSAFQIRYGGYKGVVAVDPTS  KLSLR SM
Sbjct: 604  KYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSM 663

Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160
             KY S NT LDVL +SKFQPCFLNRQ+ITLLSTLGV+D +FE KQK+AV QLD IL DP 
Sbjct: 664  RKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPE 723

Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340
             A EALE+MSPGENVNVLKEML CGY PD+EPFLSMMLQTFR  KL EL+ KTRIF PNG
Sbjct: 724  SAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNG 783

Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520
            RSMMGCLDET  LEYGQVFVQ S  G+R+ H       NE+  DQR  +++GKVIVAKNP
Sbjct: 784  RSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNP 843

Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700
            CLHPGDVR+L A++VPAL HMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDP LIP 
Sbjct: 844  CLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPC 903

Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880
             Q  PM+Y PA +  LDH+VTIEE++EYFTNY++NDSLGIIANAHT FADKEP+KA+S  
Sbjct: 904  HQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTP 963

Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060
            C++LA LFS+AVDFPKTGVPA+IP HL+VKE+PDFM+K DKPTY+S RVIGKLFREVKD+
Sbjct: 964  CVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDL 1023

Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240
             P  S I SFTK VA  SYD DMEVDGFE Y+D+A +YK EYDFKL  LMD+YGIKTE+E
Sbjct: 1024 PPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAE 1083

Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELS---SQGDDLYAKAS 3411
            I+SG+I+  ++ F +R+DA+AI  A+R+L+KE R WF  K         S  DD+YAKAS
Sbjct: 1084 IVSGNILSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKAS 1143

Query: 3412 AWYHVTYHEKYWGCY--NDGLDRDHFLSFPWCVYNKLINIK-----RDKNSKKRSLNQSL 3570
            AWYH+TYH +YWG Y   DG +R HF+SFPWC+Y+KLI+IK     R +NS+  SL  ++
Sbjct: 1144 AWYHITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTM 1203

Query: 3571 E 3573
            E
Sbjct: 1204 E 1204


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1422 bits (3682), Expect = 0.0
 Identities = 734/1126 (65%), Positives = 872/1126 (77%), Gaps = 4/1126 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP  +SAE VK FLEN+TG GTVYAL+++Q K  R   R+FA VQF + +S
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGR---RAFAKVQFANNKS 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I  L ++ LYYG SYLK  EMK DIV +PRT +  ++   L+FGCQIS++KF+ L  
Sbjct: 58   AEFIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS 116

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              D  +  G GL+K+ F L+H   +YKL LSY++IWQ+ L  P  +  + +FLL+Q+  A
Sbjct: 117  K-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQ--NAQFLLLQLFGA 173

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+++          D  +++F++TPDDQWVR TDFT S  IG SS++CLE     +LP
Sbjct: 174  PRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFRNGVQLP 224

Query: 904  GIRENFHNYKEDEGRFLLESGSTFS--HRMDLVPIVEPPPQGRELPYDILFKINSLVQNG 1077
               E+F  YKE   +F+L++G TFS   ++ LVPIV  P +G ELPY ILFKI+SL+Q+G
Sbjct: 225  NFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLP-EGIELPYKILFKISSLIQHG 283

Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
               G  L+  FF+LV P    +  IE ALEKL + K+ CY+PV+WL EQY +YL  +  P
Sbjct: 284  CFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLP 343

Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
            +S  I+LDDGLVYVRRV VTP KVYFCGPEVNVSNRV+R+Y   I+NF+RVSFVDE+WEK
Sbjct: 344  KSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEK 403

Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
            + STDL PR  T    + TD+Y+RILSTL+NG IIG+K+FE LAFSSSQLRDNS+WMFA 
Sbjct: 404  IHSTDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFAS 462

Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
              G+TA  IR WMG+FR IRNVAKYAAR GQSF SS ETL+V RHE++  IPDV     G
Sbjct: 463  RPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVACSLHG 521

Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
            T Y+FSDGIGKIS++FA RV IKCG++  TPS+FQIRYGGYKGVVAVDP S  KLSLRKS
Sbjct: 522  TNYIFSDGIGKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKS 580

Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
            M KY S N  LDVL WSK+QPC+LNRQL+TLLSTLGV D + E+KQ EAVDQLD IL D 
Sbjct: 581  MLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDS 640

Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
            L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF PN
Sbjct: 641  LKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPN 700

Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQF--HANPFFIRNENELDQRSLIIMGKVIVA 2511
            GR+MMGCLDE+RTLEYGQVFVQ S AG RQF   ++PF   N++       I+ G V+VA
Sbjct: 701  GRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPF---NDSGSANCDFILKGNVVVA 757

Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691
            KNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+L
Sbjct: 758  KNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDL 817

Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871
            IP RQV+ MDYTPA +  LDHDVTIEEV+EYFTNYI+NDSLGIIANAH  FAD+EP  A 
Sbjct: 818  IPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAM 877

Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051
            S+ C +LA LFSIAVDFPKTGVPAEIPS L  KE+PDFMEK DKPTY S +VIGKLF++V
Sbjct: 878  SDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKV 937

Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231
            K+  PQAS I +FT++VAR SYDSDM VDGFEDYIDEAFYYK EYD KLGNLMDYYGIKT
Sbjct: 938  KNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKT 997

Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411
            E+EILSG IMK S+ FDRRKDA+AIG AVR L+KEAR WF R+      S  DD+ AKAS
Sbjct: 998  EAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRR------SDIDDMLAKAS 1051

Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKK 3549
            AWYHVTYH  YWG YN+GL RDHF+SFPWCVY++LI IK+ K  K+
Sbjct: 1052 AWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKR 1097


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1422 bits (3680), Expect = 0.0
 Identities = 737/1138 (64%), Positives = 878/1138 (77%), Gaps = 6/1138 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP  +SAE VK FLEN+TG GTVYAL+++Q K  R   R+FA VQF + +S
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGR---RAFAKVQFANNKS 57

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            AE I  L ++ LYYG SYLK  EMK  IV +PRT +  ++   L+FGCQIS++KF+ L  
Sbjct: 58   AEIIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
             + +I   G GL+K+ F L++   +YKL LSY++IWQ+ L  P  +    +FLL+Q+S A
Sbjct: 117  KVVSI-KFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQ--KAQFLLLQLSGA 173

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            PRI+++          D  +++F++TPDDQWVR TDFT S  IG SS++CLE     +LP
Sbjct: 174  PRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNGVRLP 224

Query: 904  GIRENFHNYKEDEGRFLLESGSTFSH---RMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074
               E+F  YKE   + +L++G TFS    ++ LVPIV  P +G ELPY ILFKI+SL+Q+
Sbjct: 225  NFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLP-EGIELPYKILFKISSLIQH 283

Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
            G   G  L+  FF+LV P    +  IE ALEKL + K+ CY+PV+WL EQY +YL  +  
Sbjct: 284  GCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQL 343

Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
            P+S +I+LDDGLVYVRRV VTP KVYFCGPEVNVSNRV+R+Y   IDNF+RVSFVDE+WE
Sbjct: 344  PKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWE 403

Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
            K+ STDL PR  T    + TD+Y RILSTL+NG +IG+KKFE LAFSSSQLRDNS+WMFA
Sbjct: 404  KIHSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 462

Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794
               G+TA  IR WMG F+ IRNVAKYAAR GQSF SS ETL+V RHE++  IPDV     
Sbjct: 463  SRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVVCSLH 521

Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974
            GT Y+FSDGIGKIS++FARRVA+KCG++  TPS FQIRYGGYKGVVAVDP S  KLSLR 
Sbjct: 522  GTNYIFSDGIGKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRN 580

Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154
            SM KY S N  LDVL WSK+QPC+LNRQL+TLLSTLGV+D +FE+KQ EAVDQLD IL D
Sbjct: 581  SMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHD 640

Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334
             L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF P
Sbjct: 641  TLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIP 700

Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFH--ANPFFIRNENELDQRSLIIMGKVIV 2508
            NGR+MMGCLDE+RTLEYGQVFVQ +  G RQF+  ++PF   N++       I+ G V+V
Sbjct: 701  NGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPF---NDSGSTNCDFILEGNVVV 757

Query: 2509 AKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPE 2688
            AKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+
Sbjct: 758  AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPD 817

Query: 2689 LIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 2868
            L+P RQ +PMDYTPA S  LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A
Sbjct: 818  LVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 877

Query: 2869 ESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFRE 3048
             S+ C +LA LFSIAVDFPKTGVPAEIPS L  KE+PDFMEK DKPTY S +VIGKLF++
Sbjct: 878  MSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQK 937

Query: 3049 VKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIK 3228
            VKD  PQAS I +FT +VAR SYD DM V+GFEDYIDEAFYYK EYD KLGNLMDYYGIK
Sbjct: 938  VKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIK 997

Query: 3229 TESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKA 3408
            TE+EILSG IMK S+ FDRRKDADAIG AVR+L+KEARTWF R+      S  DD+ AKA
Sbjct: 998  TEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR------SDIDDMLAKA 1051

Query: 3409 SAWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQ 3579
            SAWYHVTYH  YWG YN+GL RDHF+SFPWC+Y++LI IK+ K  KK  L+  SL NQ
Sbjct: 1052 SAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQ 1109


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 1412 bits (3655), Expect = 0.0
 Identities = 734/1145 (64%), Positives = 870/1145 (75%), Gaps = 5/1145 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQPK  +  PR FA+VQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNERY 58

Query: 364  AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
            A QI +    +RLYYG SYL   E+ +DIVPKPR  + ++    ++FGCQ+S +KF +LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118

Query: 541  KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
               D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  
Sbjct: 119  SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176

Query: 721  APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
            AP+IFEK       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLEL  +  +
Sbjct: 177  APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234

Query: 901  PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQN 1074
            P  RENF NY E     FL+ESGS++S   + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235  PDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293

Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
              L GP LD   ++L++P       I+  LEKL H  +SCYEP +WLR+QY +  +    
Sbjct: 294  ACLPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKL 353

Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
            P S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY   I+NF+RVSFVDED E
Sbjct: 354  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413

Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
            K+RS DLSPR  T   ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFA
Sbjct: 414  KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 470

Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794
            P +G+T+A IR WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   
Sbjct: 471  PIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISL 529

Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974
            GT YVFSDGIGKIS+EFARRVA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRK
Sbjct: 530  GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589

Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154
            SMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV+D +F+KKQ+E VD+LD ILTD
Sbjct: 590  SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTD 649

Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334
            PL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF  
Sbjct: 650  PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709

Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAK 2514
             GRSMMGCLDETRTLEYGQV VQ S                +     R  II G V+VAK
Sbjct: 710  GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753

Query: 2515 NPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELI 2694
            NPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELI
Sbjct: 754  NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813

Query: 2695 PRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAES 2874
            P R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S
Sbjct: 814  PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873

Query: 2875 NACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVK 3054
            + CIELA  FS+AVDFPKTGV AEIP HLHVKE+PDFMEK DKPTYES  VIGKLFREVK
Sbjct: 874  DPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933

Query: 3055 DIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTE 3234
            + AP    IKSFT +VA  SYD DMEVDGFE+Y+DEAF+YK  YDFKLGNLMDYYGIKTE
Sbjct: 934  ERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTE 993

Query: 3235 SEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASA 3414
            +EILSG IM+ S+ F +R+DA++IG AVRAL+KE  + F   N TE  ++     AKASA
Sbjct: 994  AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF---NATEEENES----AKASA 1046

Query: 3415 WYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG- 3591
            WYHVTYH  YWG YN+GL+RDHFL F WCVY+KL+ IK+  N+ +R   ++LE   R G 
Sbjct: 1047 WYHVTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKK-TNAGRRQRQETLE---RLGH 1102

Query: 3592 -LRLS 3603
             LRLS
Sbjct: 1103 VLRLS 1107


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 1411 bits (3653), Expect = 0.0
 Identities = 723/1132 (63%), Positives = 868/1132 (76%), Gaps = 2/1132 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP  V+ + VK+FLE  TG GTVYA+K+RQPK  R  PR FA+VQFTS   
Sbjct: 1    MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPK--RGGPRVFAIVQFTSERH 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
            A  I ++  +RLYYG SYLK  EM++DIVPKPR  + S+    ++FGCQ+S +K  +LW 
Sbjct: 59   ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              +  ++ G G+RKL F ++    +Y+L+LSY++IWQI L  P+    S+KFL+IQV  A
Sbjct: 119  AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGG--SSKFLVIQVIGA 176

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            P+IFEK       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLEL  +  +P
Sbjct: 177  PKIFEKEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP 234

Query: 904  GIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQNG 1077
              RENF NY E     FL++SGS++S   + LVP+V+PPP G +LP++ILFK+N+LVQN 
Sbjct: 235  DFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPP-GFDLPFEILFKVNTLVQNA 293

Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
             L GP LD  F++L++P       I+ +LEKL H  + CYEP +WLRE+Y K  +SK  P
Sbjct: 294  CLPGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLP 353

Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
             S TISLDDGLVY+ RV VTP++VYF GPEVNVSNRV+RHY   I+NF+R+SFVDED EK
Sbjct: 354  LSPTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEK 413

Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
            + S DLSPR  T   ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFAP
Sbjct: 414  IHSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470

Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
             + +TAA IR WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+     
Sbjct: 471  RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEAMYLD 529

Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
            T YVFSDGIGKIS+EFAR+VA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRKS
Sbjct: 530  TRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589

Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
            MSK+ S NT LDVL WSK+QPC+LNRQ+ITLLSTLGV+D +FEKKQ+E VD+LD ILTDP
Sbjct: 590  MSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDP 649

Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
            L A EAL +M+PGEN N+LK++L CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF P 
Sbjct: 650  LEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPG 709

Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517
            GRSMMGCLDETRTLEYGQV VQ S         NP        +  +  II G V+VAKN
Sbjct: 710  GRSMMGCLDETRTLEYGQVVVQYS---------NP-------TMPGKRYIITGPVVVAKN 753

Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697
            PCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYF+ WD ELIP
Sbjct: 754  PCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIP 813

Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877
             R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S+
Sbjct: 814  PRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 873

Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057
             CIELA  FSIAVDFPKTG+ AEIP HL+VKE+PDFM+K DKPTYES  VIGKLFREVK+
Sbjct: 874  PCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKE 933

Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237
             AP    I+SFT +VA  SYD DMEV+GFE+YIDEAF++KG YD++LGNLMDYYGIKTE+
Sbjct: 934  RAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEA 993

Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417
            EILSG IM+ S+ F +R+DA++IG AVRAL+KEA +WF   N  E  +  D+  AKASAW
Sbjct: 994  EILSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSWF---NNAEDKNDFDE-SAKASAW 1049

Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLE 3573
            YHVTYH  YWG YN+GL+RDHFLSF WCVY+KL+ IK+  N  +R   ++LE
Sbjct: 1050 YHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKK-ANVGRRQRQEALE 1100


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score = 1408 bits (3644), Expect = 0.0
 Identities = 732/1145 (63%), Positives = 870/1145 (75%), Gaps = 5/1145 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQPK  +  PR FA+VQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNEIY 58

Query: 364  AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
            A QI +    +RLYYG SYL   E+++DIVPKPR  + ++    ++FGCQ+S +   +LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118

Query: 541  KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
               D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  
Sbjct: 119  SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176

Query: 721  APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900
            AP+IFEK       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLEL  +  +
Sbjct: 177  APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234

Query: 901  PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQN 1074
            P  RENF NY E     +L+ESGS++S   + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235  PDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293

Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
              L GP LD   ++L++P  I    I+  LEKL +  +SCYEP +WLR+QY +  +    
Sbjct: 294  ACLPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353

Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
            P S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY   I+NF+RVSFVDED E
Sbjct: 354  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413

Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
            K+RS DLSPR  T   ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFA
Sbjct: 414  KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 470

Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794
            P  G+T+A IR WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   
Sbjct: 471  PIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISL 529

Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974
            GT YVFSDGIGKIS+EFARRVA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRK
Sbjct: 530  GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589

Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154
            SMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGVED +FEKKQ+E VD+LD ILTD
Sbjct: 590  SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTD 649

Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334
            PL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF  
Sbjct: 650  PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709

Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAK 2514
             GRSMMGCLDETRTLEYGQV VQ S                +     R  II G V+VAK
Sbjct: 710  GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753

Query: 2515 NPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELI 2694
            NPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELI
Sbjct: 754  NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813

Query: 2695 PRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAES 2874
            P R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S
Sbjct: 814  PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873

Query: 2875 NACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVK 3054
            + CIELA  FS+AVDFPKTGV AEIP HL+VKE+PDFMEK DKPTYES  VIGKLFREVK
Sbjct: 874  DPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933

Query: 3055 DIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTE 3234
            + AP    IKSFT +VA  SYD DMEVDGFE+Y+DEAF+YK  YDFKLGNLMDYYGIKTE
Sbjct: 934  ERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTE 993

Query: 3235 SEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASA 3414
            +EILSG IM+ S+ F +R+DA++IG AVRAL+KE  + F   N TE  ++     AKASA
Sbjct: 994  AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF---NATEEENES----AKASA 1046

Query: 3415 WYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG- 3591
            WYH+TYH  YWG YN+GL+RDHFLSF WCVY+KL+ IK+  N+ +R   ++LE   R G 
Sbjct: 1047 WYHITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKK-TNAGRRQRQETLE---RLGH 1102

Query: 3592 -LRLS 3603
             LRLS
Sbjct: 1103 VLRLS 1107


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 1406 bits (3640), Expect = 0.0
 Identities = 726/1140 (63%), Positives = 858/1140 (75%), Gaps = 4/1140 (0%)
 Frame = +1

Query: 184  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQPK  +  PR +A+VQFTS   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVYAIVQFTSERH 58

Query: 364  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543
               I +   +RLYYG SYLK  E+++DIVPKPR  + ++    + FGCQ+S +KF +LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 544  GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723
              D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  A
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIGA 176

Query: 724  PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903
            P+IFEK       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLEL  +  +P
Sbjct: 177  PKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 234

Query: 904  GIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQNG 1077
              RENF NY E     FL+ESGS++S   + LVP+V+PPP G  LP++ILFK+N+LVQN 
Sbjct: 235  DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPP-GFSLPFEILFKLNTLVQNA 293

Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257
             LSGP LD  F+RL++        I+  LEKL H  + CYEP  WLR++Y K+++    P
Sbjct: 294  CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 353

Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437
             S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY   I+NF+RVSFVDED EK
Sbjct: 354  LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413

Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617
            +RS DLSPR  T   ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFAP
Sbjct: 414  VRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470

Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797
             + ITAA IR WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   G
Sbjct: 471  IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLG 529

Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977
            T YVFSDGIGKIS+EFAR+VA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRKS
Sbjct: 530  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589

Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157
            MSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV D +FEKKQ+E VD+LD ILT P
Sbjct: 590  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 649

Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337
            L A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF   
Sbjct: 650  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 709

Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517
            GRSMMGCLDETRTLEYGQV VQ S                +     R  II G V+VAKN
Sbjct: 710  GRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKN 753

Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697
            PCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P
Sbjct: 754  PCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVP 813

Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877
             R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S+
Sbjct: 814  PRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 873

Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057
             CIELA  FS AVDFPKTGV A IP HL+VKE+PDFMEK DKPTYES  VIGKLFREVK+
Sbjct: 874  PCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKE 933

Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237
             AP    IKSFT +VA  SYD DMEVDGFE+Y+DEAFY K  YDFKLGNLMDYYGIKTE+
Sbjct: 934  RAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEA 993

Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417
            EILSG IM+ S+ F +R+DA++IG AVRAL+KE  + F+     E  S      AKASAW
Sbjct: 994  EILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES------AKASAW 1047

Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDK--NSKKRSLNQSLENQFRFG 3591
            YHVTYH  YWG YN+GL+RDHFLSF WCVY+KL+ IK+      +++   + L++  RFG
Sbjct: 1048 YHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLRFG 1107


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 721/1143 (63%), Positives = 879/1143 (76%), Gaps = 6/1143 (0%)
 Frame = +1

Query: 190  RTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPESAE 369
            +TI++ GFP+SV    VK F+E +TGEG+V A+K+R+ K      R++A++QF +   A 
Sbjct: 5    KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQ--RAYAIIQFNTANQAT 62

Query: 370  QISSLINQR---LYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540
             + SL N+    L YG SYLK+ EM RDIVP PRT + SL+   L+FGCQIS+E+FS LW
Sbjct: 63   HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122

Query: 541  KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720
            +  D  +++  G+RK  F + H + ++K DLSY++IW+I+   P  +  + K+LLIQ+  
Sbjct: 123  RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK--TAKYLLIQLIG 180

Query: 721  APRIFEK--PLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNC 894
            APRIFE   P  +S ++Y DP  NYF+++PDDQW+RA DFT  +CIGQSSAICLEL  + 
Sbjct: 181  APRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDR 240

Query: 895  KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074
              P IRE F +Y+E+EG++ LESGS FSH +D+VPIV PP QG  +P+DILFK+NSLVQ+
Sbjct: 241  DFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPP-QGIYIPFDILFKVNSLVQH 299

Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254
            G LSG  LD+ F+ LV P  I V  IE ALEK+ +SKD CYEP +WL++QY  YL S + 
Sbjct: 300  GCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYP 359

Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434
             +S +ISLD+GLVYVRRVQ+TP KVYFCGPE+NVSNRV+RH+   IDNF+RVSFVDE+ +
Sbjct: 360  LQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELD 419

Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614
            K+ STDLS R+        T++Y RILS L+NGI+IG+KKFE LAFSSSQLR+NSLWMFA
Sbjct: 420  KLYSTDLSSRISVGV---RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFA 476

Query: 1615 PW-NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIER 1791
            P   G+TA  IR WMG+F  IRNVAKYAAR GQSF SS ETL+V R+EI+  IPD +++ 
Sbjct: 477  PTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEI-IPDAQVKH 535

Query: 1792 DGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLR 1971
            D  EYVFSDGIGKIS EFARRVA KCG   STPSAFQIRYGGYKGVVAVDPTS  KLSLR
Sbjct: 536  DTIEYVFSDGIGKISLEFARRVAKKCGY-DSTPSAFQIRYGGYKGVVAVDPTSSVKLSLR 594

Query: 1972 KSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILT 2151
            KSM KY S+NT LDVL  SK+QPC+LNRQLITLLSTL VED +FEKKQKEAV+QL+ ILT
Sbjct: 595  KSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILT 654

Query: 2152 DPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFE 2331
            + L+AQE L++MS GE  N+LKEML CGYKP+ EPFLSMMLQTFRASKLLELR KTRIF 
Sbjct: 655  NSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFI 714

Query: 2332 PNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVA 2511
            P GR+MMG LDETRTLEYG+VFVQ S   + +  +  +   N       SL++ GKV+VA
Sbjct: 715  PKGRAMMGVLDETRTLEYGEVFVQYS---NNRISSLSYGSAN-------SLVVTGKVVVA 764

Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691
            KNPCLHPGDVRVL+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL
Sbjct: 765  KNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPEL 824

Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871
            IP    +PM+Y   Q ++L HDV IEEV+EYFTNYI+NDSLGIIANAH  FADKEP KA+
Sbjct: 825  IPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAK 884

Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051
            +  CIELA LFSIAVDFPKTG+PA IP HL  KE+PDFMEK DK TY+S+ VIGKLFRE+
Sbjct: 885  AEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREI 944

Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231
            + I  +   I SFT EVA+ SYD DME DGF DY+D+AFY+K  YD+KLGNLMDYYGIK 
Sbjct: 945  QGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKN 1004

Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411
            ESEILSG+IM+ S+ F++R+D DAI  AVR+L+KEAR+WF+  + T + S   D YAKAS
Sbjct: 1005 ESEILSGNIMRMSKSFNKRRDGDAINMAVRSLRKEARSWFN-DDATGVDSGSVDAYAKAS 1063

Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591
            AWY+VTYH  YWG YN+G+ RDHFLSFPWCVY+ L+ IK++K ++ R    SLE  F   
Sbjct: 1064 AWYYVTYHHSYWGSYNEGMKRDHFLSFPWCVYHLLVQIKKEK-ARMRMHAVSLEQSFSRR 1122

Query: 3592 LRL 3600
            LRL
Sbjct: 1123 LRL 1125


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