BLASTX nr result
ID: Akebia25_contig00003199
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia25_contig00003199 (3745 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1561 0.0 ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1528 0.0 ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1527 0.0 ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1522 0.0 gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1493 0.0 gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1489 0.0 ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1484 0.0 gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1482 0.0 gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 1458 0.0 ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1452 0.0 ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 1446 0.0 ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1442 0.0 ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 1426 0.0 emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1422 0.0 gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1422 0.0 emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 1412 0.0 ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 1411 0.0 ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 1408 0.0 ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 1406 0.0 ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1405 0.0 >ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis] Length = 1132 Score = 1561 bits (4042), Expect = 0.0 Identities = 780/1143 (68%), Positives = 919/1143 (80%), Gaps = 4/1143 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP+ V+AE VK FLE+ TG GTVYALKLR PK + R +A+VQFT+ E+ Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK--KGVGRLYAIVQFTTKEA 58 Query: 364 AEQISSLI--NQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSL 537 A+ I SL ++L+YG SYL M++D VP+PRT M ++E LHFGC+IS EKF+ L Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118 Query: 538 WKGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVS 717 W+G++ +N GFG+RK+ FLL+H EY+L+L Y++IW+I+L PR ++ TK+LLIQ+ Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--TKYLLIQLL 176 Query: 718 TAPRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCK 897 APRIF+K + S +Y P FN+F++ PDDQWVR TDFT S+ IGQS+ +C+EL Y + Sbjct: 177 GAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236 Query: 898 LPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNG 1077 LP +ENF YKE E RF+LE+GS +S +DLVPIV PP G LPY+ILFKIN LVQNG Sbjct: 237 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP-DGIALPYEILFKINLLVQNG 295 Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHH--IERALEKLSHSKDSCYEPVKWLREQYTKYLTSKH 1251 ++GP LDS F+RLV P PV IE AL+KL H K+ CYEP +WL +QY KY+TS+ Sbjct: 296 CVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRS 355 Query: 1252 TPRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDW 1431 P S ISLDDGLVYV RVQVTPS+VYFCGPE+NVSNRV+RH+R IDNF+R+SF+DED Sbjct: 356 KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415 Query: 1432 EKMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMF 1611 +K+ STDLSPR + D T +Y RILSTL+NGI+IG++KFE LAFSSSQLR++S WMF Sbjct: 416 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475 Query: 1612 APWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIER 1791 A G+TAA IREWMGNFR+IRNVAKYAAR GQSFSSS ETL+V EI+ IPDVKIE Sbjct: 476 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEI 534 Query: 1792 DGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLR 1971 T+YVFSDGIGK+S+EFAR+VA KCG+K + PSAFQIRYGGYKGVVA DPTS KKLSLR Sbjct: 535 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 594 Query: 1972 KSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILT 2151 SM KY SE T LDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV QLD ILT Sbjct: 595 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 654 Query: 2152 DPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFE 2331 DPL+AQEALE+MSPGEN N+LKE+L CGYKPDAEPFLSMMLQTFRASKLLELR KTRIF Sbjct: 655 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 714 Query: 2332 PNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVA 2511 PNGRSMMGCLDETRTL YGQVFVQ+S AG+RQ H + ++ I+ G V+VA Sbjct: 715 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS--RQRFIVQGLVVVA 772 Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691 KNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL Sbjct: 773 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 832 Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871 IP +Q PMDYTPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIANAHT FAD+EP KA Sbjct: 833 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKAR 892 Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051 S C++LA FSIAVDFPKTGVPAEIP HL+VKE+PDFMEK DKPTYES VIGKLFR V Sbjct: 893 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 952 Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231 KDIAP SCI+ FTKEVAR SYD DMEVDGFED+ID+A Y+KG YD+KLGNLMDYYGIKT Sbjct: 953 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 1012 Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411 E+EIL+GSIMK S+ F +R+DA+AIG AVRAL+KEAR WF K+G++ DD YAKAS Sbjct: 1013 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE---DDAYAKAS 1069 Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591 AWYHVTYH YWGCYN G++RDHFLSFPWCVY++L+ IK+DK S + +LE QFR G Sbjct: 1070 AWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAF-PALEQQFRQG 1128 Query: 3592 LRL 3600 LR+ Sbjct: 1129 LRM 1131 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 1528 bits (3957), Expect = 0.0 Identities = 774/1140 (67%), Positives = 907/1140 (79%), Gaps = 1/1140 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 M +TIQV GFPS VSA+ +K FLE YTGEGT+ AL+++QP++ S + A VQFTS E Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I +L ++++YG +YLK EM DI+PKPR + S++ LHFGCQ+S+E+F LWK Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 ++ + G GLRK F L+H EYKL+LSY++IWQIQL+HPR ++ TKFLLIQ+ A Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQI--TKFLLIQLLGA 176 Query: 724 PRIFEKPLCSSGDIYGDPAFNY-FRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900 P+I+EK + P +Y F++ PDDQWVR DFT S IGQS A+CLEL Y +L Sbjct: 177 PQIYEKDV---------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL 227 Query: 901 PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080 P RENF YKE++G+F+LESGS++SH + LVPI+ PP QG LP+ ILFKIN+LVQNG Sbjct: 228 PNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPP-QGSSLPFQILFKINTLVQNGC 286 Query: 1081 LSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260 LSGPTLD++FFRLV P P+ IE ALEKL H K+ CYEPV+WL EQY Y+ K Sbjct: 287 LSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAG 345 Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440 S ISLD GLVYVRRVQ+TP KVYFCGPEVNVSNRV+R+Y IDNF+RVSF+DE+ EK+ Sbjct: 346 SPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKI 405 Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620 ST +SPR+ +++ + T +Y+RILS L+NGI+IG+KKF+ LAFSSSQLRDNS WMFA Sbjct: 406 HSTVISPRM--SKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463 Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800 G+TAA IR WMG+F IRNVAKYAAR GQSFSSS ETL V + EI+ IPD++I + T Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEIHKGRT 522 Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980 YVFSDGIGKIS + A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM Sbjct: 523 TYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSM 582 Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160 KY S+NT+LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+ Sbjct: 583 FKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPV 642 Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340 AQEALE+MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNG Sbjct: 643 AAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNG 702 Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520 RSMMGCLDETRTLEYG+VFVQ+S G RQ + R + I+ GK++VAKNP Sbjct: 703 RSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNP 761 Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700 CLHPGDVRVL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP Sbjct: 762 CLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPP 821 Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880 +Q+ PMDYTPA + +LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE KA + Sbjct: 822 QQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDP 881 Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060 C ELA LFSIAVDFPKTGVPAEIP +L VKE+PDFMEK DKPTYES VIGKLFREVKDI Sbjct: 882 CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDI 941 Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240 AP I+SFT++VAR SYD DMEV GFEDY+ +AFYYK EYD+KLGNLMDYYGIKTESE Sbjct: 942 APHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESE 1001 Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420 ILSGSIM+ S+ FDRRKDA+AIG AV++L+KEARTWF+ K G+E S+ DD+YAKASAWY Sbjct: 1002 ILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDSEADDVYAKASAWY 1060 Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600 HVTYH YWGCYN+G+DRDHFLSFPWCVY+KLI+ KR K S + SLE + GLRL Sbjct: 1061 HVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120 >ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] Length = 1133 Score = 1527 bits (3954), Expect = 0.0 Identities = 765/1142 (66%), Positives = 909/1142 (79%), Gaps = 2/1142 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 M +T++VSGFPSS +A V+VFLE++TG GTV ALK+R+ +T R +A+VQFT+ + Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRT--GGARKYAIVQFTTTRA 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AEQI SL N RL+YG SYL M RDI+P+PR+ + ++E LHFG Q S+EKFS++W Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 G + +N G G+RKL F L+H EYKL+L +++IWQI+L PR + + K+LLIQ+ A Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQ--TVKYLLIQLYGA 176 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+E+ + SS +++ DP NYFRD PD+QWVR TDFT S IG SS++CLEL + +LP Sbjct: 177 PRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP 236 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 ENF YKE+EG F+LESG TFS DLVPIV P G LPY+ILF++N LVQNG L Sbjct: 237 NFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPS-SGVNLPYNILFRVNLLVQNGCL 295 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 +G LD F+RLV P+ +PV IE ALEKL H K+ CYEP KW EQY KYLTS + PRS Sbjct: 296 AGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRS 355 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 +SLD GLVYV +VQ+TP KV+FCGPEVNVSNRV+R YR IDNF+RVSFVDE+ EK+ Sbjct: 356 PVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIH 415 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 STD+SPR + + + T +Y RILSTL+NGI+IG+KKFE LAFSSSQLR+NS WMFA Sbjct: 416 STDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRL 475 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 G+TAA IR WMG+F IRNVA+YAAR GQSF SS ETL+V HEI+ IPD+++ R GT Sbjct: 476 GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEI-IPDIEVSRGGTR 534 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 Y+FSDGIGKIS+EFAR+VAIKCG K TPSAFQIRY GYKGVVAVDPTS KKLSLR+SM Sbjct: 535 YLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMF 594 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY SENT LDVL SK+QPCFLNRQLITLLSTLGV D FE+KQ+EAVDQLD +LTDPLR Sbjct: 595 KYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLR 654 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR KTRIF PNGR Sbjct: 655 AQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 714 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523 SMMGCLDETRTLE+GQVFV+ S + R + + + +I G V+VAKNPC Sbjct: 715 SMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR--GQCYLIKGSVVVAKNPC 772 Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703 LHPGD+R+L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP + Sbjct: 773 LHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQ 832 Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883 Q+ PMDYTP + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA ADKE LKA S C Sbjct: 833 QISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPC 892 Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063 +ELA FSIAVDFPKTGVPAEIPS+L +E+PDFMEK DKP+YES VIGKLFREVKDIA Sbjct: 893 VELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIA 952 Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243 P+ S I+SFT +VAR YD DMEVDGFEDYID+AFYYK YD+KLGNLM+YYGIKTE+E+ Sbjct: 953 PRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAEL 1012 Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423 LSGS MK S+ F +++DA+AIG AVR+LKKEAR+WF+ K G+ L SQ DD+ AKASAWYH Sbjct: 1013 LSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEK-GSGLDSQADDVDAKASAWYH 1071 Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSK-KRSL-NQSLENQFRFGLR 3597 VTYH YWGCYN+G++RDHFLSFPWCVY+KLI IKR +++ +RSL S+E QF GL Sbjct: 1072 VTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLH 1131 Query: 3598 LS 3603 LS Sbjct: 1132 LS 1133 >ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|590697846|ref|XP_007045553.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|590697850|ref|XP_007045554.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] Length = 1109 Score = 1522 bits (3941), Expect = 0.0 Identities = 766/1139 (67%), Positives = 905/1139 (79%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQVS FPS+V AE VK FLE YTG+ TVYALK+RQ K + R++A+VQFT Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQK---NGGRAYAIVQFTKSTD 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I L NQRLYYG+SYLK EM+ DIVPKPRT + ++E LHFGCQ+S EKF LW+ Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 +D +N G G+RKL+FLL+H +EY+LDL Y++IWQI+L PR++ ++K+LLIQ+ A Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQ--TSKYLLIQLFGA 175 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+EK + SSG ++ +P NYF D PDDQWVR TDFT SSCIGQSS +CLEL Y +LP Sbjct: 176 PRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP 235 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 RENF YKE EG+F+LESGS++S ++LVPIV P G +LPY+ILFKIN LVQNG + Sbjct: 236 NFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPS-LGIDLPYEILFKINLLVQNGCI 294 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 GP LD+ F+RLV+P I +I+ ALEKL + K+ C+EP KWL EQY Y+ SK P S Sbjct: 295 PGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGS 354 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 ISLDDGLV VRRVQ+TPS+VYFCGPE+NVSNRV+RH+ IDNF+R++FVDE+ EK+ Sbjct: 355 PVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIH 414 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 STDL R + T++Y RILSTLKNGI+IG+K+FE LAFSSSQLR+NS WMFA Sbjct: 415 STDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASRE 468 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 G+TAA IR WMG F IRNVAKYAAR GQSFSSS ETL+V + EI+ I DV+I+RDG Sbjct: 469 GLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEI-IDDVEIKRDGIN 527 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 YVFSDGIGKIS++FA++VA KC + TPSAFQIR GG+KGVVAVDPTS KKLSLR SMS Sbjct: 528 YVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMS 587 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D FE+KQ+E VDQL+ ILTDPL+ Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLK 647 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR K+RIF NGR Sbjct: 648 AQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGR 707 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523 SMMGCLDETRTL+YGQVFVQVS G R ++ I+ GKV+VAKNPC Sbjct: 708 SMMGCLDETRTLDYGQVFVQVS--GSRS---------------EQRFIVQGKVVVAKNPC 750 Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703 LHPGDVRVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP + Sbjct: 751 LHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSK 810 Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883 Q+ PMDY+PA + L+H+VTIEEV+EYFTNYIVNDSLGIIANAHT FAD+EP KA S+ C Sbjct: 811 QIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSEC 870 Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063 LA LFSIAVDFPKTGVPAEIP L VKE+PDFMEK DKPTY+S+ VIGKLFREVKD+A Sbjct: 871 KWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLA 930 Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243 P I+S T+E YD DMEVDG+EDY+D+AFY+K YD+KLGNLM+YYGIKTE+EI Sbjct: 931 PNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEI 990 Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423 LSG IMK SR F +++DA+AIG AVR+L+KEAR+WF+ K G L S+ DDLYAKASAWYH Sbjct: 991 LSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEK-GNGLDSEADDLYAKASAWYH 1049 Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600 VTYH YWG YN+G++R+HFLSFPWCVY+KLI IK+ S++ S SLE+ F GLRL Sbjct: 1050 VTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108 >gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] Length = 1133 Score = 1493 bits (3865), Expect = 0.0 Identities = 761/1141 (66%), Positives = 893/1141 (78%), Gaps = 2/1141 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQ+SGFPS VSAE+VK FLE +TG GTVYA+K+R K S RS+A+VQF + E+ Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGS--RSYAIVQFMTVET 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I L N RL+YG SYL M+RDIVPKPR + SL+ LHFGCQIS+EKFS LW+ Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 + ++ G GLR+L F LT+ +EY+L L Y+++WQI+L PR + + K+LLIQ+ A Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQ--TAKYLLIQLLGA 176 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PR++EK + S DI +P FNYF+DTPDDQWVRATDFT S CIG SSA+ LEL Y LP Sbjct: 177 PRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP 236 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 +RENF YKE E RF+LESGS+FS +DLVPIV PP G LP++ +FKIN L+QNG L Sbjct: 237 DLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPP-SGINLPFETVFKINMLLQNGCL 295 Query: 1084 SGPTLDSTFFRLVHPSNIP-VHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260 SGPTLD F+RLV P I V I ALEKL + K+ YEP WL EQY KYLT+ P+ Sbjct: 296 SGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPK 355 Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440 I+LD GLVYVRRVQVTPSKVYFCGPE+NVSNRV+R Y ID F+RVSFVDE+ EK+ Sbjct: 356 PPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415 Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620 STDLSPR + + T +Y+RILS L+NGI IG++KFE LAFSSSQLRDNSLWMFA Sbjct: 416 FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475 Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800 +G +A IR+W+G+FR IRNVAKYAAR GQSF SS ETLTV E + I D++IER Sbjct: 476 DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEV-ISDIEIERGAV 534 Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980 +YVFSDGIGKISS FA+RVA KCG+K PSAFQIRY GYKGVVAVDPTS KLSLRKSM Sbjct: 535 KYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSM 594 Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160 KY SE LDVL +SK Q C+LNRQLITLLSTLGV DR+FEKKQ+EAV QL+ IL DPL Sbjct: 595 WKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPL 654 Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340 RA+EAL++MS GE N+LKE+L CGY+P+AEPFLSMMLQ FRASKL ELR KTRI P+G Sbjct: 655 RAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDG 714 Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520 R+MMGCLDE RTLEYG+VFVQ S HR F + F + ++ I++G+V+VAKNP Sbjct: 715 RAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGS--GQNYIVVGRVVVAKNP 772 Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700 CLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP+ Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832 Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880 +Q +PMDY+PA + LDHDV IEEVQEYFTNYIVNDSLGIIANAHTAFADKEP KA S + Sbjct: 833 KQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPS 892 Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060 CIELA LFSIAVDFPKTGVPA IP L+VKE+PDFMEKL+KPTYES VIGKLFREVKDI Sbjct: 893 CIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDI 952 Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240 AP + FTKEVA SYD DME DGFEDYID+AFYYK YD+KLGNL+DYYGIK+E+E Sbjct: 953 APNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAE 1012 Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420 I+ GSIM+ S+ F +R+DA++I AVRAL+KEARTWF+ K G+ L S DD+YAKASAWY Sbjct: 1013 IIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEK-GSSLDSAADDVYAKASAWY 1071 Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLR 3597 +VTYH YWGCYN+G++RDH+LSFPWCVY+KL+ IKR K S +RSL SLE F L Sbjct: 1072 YVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLH 1131 Query: 3598 L 3600 L Sbjct: 1132 L 1132 >gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 1489 bits (3856), Expect = 0.0 Identities = 749/1140 (65%), Positives = 898/1140 (78%), Gaps = 1/1140 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GF S VSA VK FLE YTG TVYALK+RQ K + R+FA+VQFT Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 A I L NQRLYYG SYLK EM+ DIVPKPR + ++E ++FGCQ+SEEKF LWK Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 + LN G G+RKLEFLL++C +YKL+L Y++IWQI+LR P S+ ++K LLIQ+ A Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+EK + +S ++ DP NYF+D PDDQWVR TDFT S+CIGQSS + LEL +N +LP Sbjct: 176 PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP 235 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 RENF YKE+EGR +LESGS++S + LVPIV P + +LP++ILFK+N LVQNG + Sbjct: 236 NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 GP LD TF+RLV P + +I+ ALEKL + ++ CYEP +WL E+Y + S+ S Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 TISLD+GLVYVRRVQ+TPS+VYFCGPE+NVSNRV+R + IDNF+R+SFVDE+ EK+ Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 ST++ R + T +YKRILSTL+NGI+IG K+FE LAFSSSQLR+NS WMFA Sbjct: 415 STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 G+TAA IR WMGNF IRNVAKYAAR GQSFSSS ETL+V + EI+ IPD++I +DG + Sbjct: 469 GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIK 527 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 YVFSDGIGKIS+EFA++VA KC +K TPSAFQIR GG+KGVVA+DPTS KLSLRKSM Sbjct: 528 YVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSME 587 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV DR FEKKQ+E VDQL+ +LTDPL Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLE 647 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF GR Sbjct: 648 AQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGR 707 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523 SMMGCLDETRTL YGQVFVQ S G R +R I+ GKVIVAKNPC Sbjct: 708 SMMGCLDETRTLNYGQVFVQFS--GSRS---------------ERRFIVQGKVIVAKNPC 750 Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703 LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP + Sbjct: 751 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810 Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883 Q+ PMDY+PA + LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S C Sbjct: 811 QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPC 870 Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063 +ELA LFSIAVDFPKTGVPAEIP L VKE+PDFMEK DKP+Y+SH VIGKLFREVK++A Sbjct: 871 LELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLA 930 Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243 P IK T+E + YD DMEV+GFEDYID+AF++K +YD+KLGNLMDYYG+KTE+EI Sbjct: 931 PNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEI 990 Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423 L G IMK SR F +++DA+AI AVR+L+KEAR+WF+ K G+EL + DD YAKASAWY+ Sbjct: 991 LGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYY 1049 Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLRL 3600 VTYH YWG YN+G++RDHFLSFPWCVY+KLI IK++K + + +L+ SLE++F+ GL L Sbjct: 1050 VTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109 >ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] Length = 1109 Score = 1484 bits (3842), Expect = 0.0 Identities = 767/1130 (67%), Positives = 900/1130 (79%), Gaps = 1/1130 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV G PS+VSA +K FLE YTGEGT+ AL+++QPK+ S + A VQFTS Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I SL Q L+YG +YLK EM DI+PKPRT + S++ LHFG Q+S E+F LWK Sbjct: 59 AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 ++ + GFGLRK F L+H EYKL+LS ++IWQIQLR PR + +TKFLLIQ+ A Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQ--NTKFLLIQLLDA 175 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 P+I+EK + A +YF++TPDDQWVR DFT S IGQSSA+CLEL + +LP Sbjct: 176 PQIYEKDVS---------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP 226 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 ENF YKE++ +F+LESG++FS + LVPIV PP QG LP+ ILFKIN+LVQNG L Sbjct: 227 NFCENFARYKENDRKFILESGASFSGNLHLVPIVGPP-QGSNLPFKILFKINTLVQNGCL 285 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 SGPTLD+ FFR V P I + IE ALEKL + ++ CYEPV+WL EQY Y+ SK S Sbjct: 286 SGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGS 344 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 ISLD GLVYVRRVQ+TP KVYFCGPEVNVSNRV+R+Y IDNF+RVSF+DE+ EK+ Sbjct: 345 PAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIH 404 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 ST +SPR ++NE ++ T +Y+RILS L+NGI+IG+KKF+ LA SSSQLRDNS WMFA Sbjct: 405 STVISPR-MSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRP 462 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 G+TAA IR MG+F IRNVAKYAAR GQSFSSS ETL V +HEI+ IPD++ RDGT Sbjct: 463 GLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIETHRDGTT 521 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 YVFSDGIGKIS+E A RVAIKCG K+STPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM Sbjct: 522 YVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 581 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY SENT+LDVL+WSK++PCFLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLR Sbjct: 582 KYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLR 641 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGR Sbjct: 642 AQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 701 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQ-FHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520 SMMGCLDETRTLEYG+VFVQ+S G RQ F + F + + D + I+ GKV+VAKNP Sbjct: 702 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNP 759 Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700 CLHPGDVR+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819 Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880 RQ+ PMDYTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE KA Sbjct: 820 RQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPP 879 Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060 C ELA LFSIA++FPKTGVPAEIP HLHVKE+PDFMEK +KPTYES VIGKLFREVKD+ Sbjct: 880 CKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDV 939 Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240 AP ++SFT++VA SYD+DMEVDGFEDY+ +AFYYK +YDFKLG+LMD GI+TESE Sbjct: 940 APHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESE 999 Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWY 3420 ILSGSIMK S+ FD+RKDA+AI AVR+L+KEARTWF+ K G+ + DD+YA ASAWY Sbjct: 1000 ILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN-KMGSGTYAGADDVYAIASAWY 1058 Query: 3421 HVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSL 3570 HVTYH YWGCYN+G+ DHFLSFPWCVY+KLI IKRDK S RSL+ SL Sbjct: 1059 HVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS-IRSLHLSL 1107 >gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 1482 bits (3837), Expect = 0.0 Identities = 745/1140 (65%), Positives = 894/1140 (78%), Gaps = 1/1140 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GF S VSA VK FLE YTG TVYALK+RQ K + R+FA+VQFT Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 A I L NQRLYYG SYLK EM+ DIVPKPR + ++E ++F C +SEEKF LWK Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 + LN G G+RKLEFLL++C +YKL+L Y++IWQI+LR P S+ ++K LLIQ+ A Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+EK + +S ++ DP NYF+D PDDQWVR TDFT S+CIGQSS +CLEL +N +LP Sbjct: 176 PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP 235 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 RENF YKE+EGR +LESGS++S + LVPIV P + +LP++ILFK+N LVQNG + Sbjct: 236 NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 GP LD TF+RLV P + +I+ ALEKL + ++ CYEP +WL E+Y + S+ S Sbjct: 295 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 354 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 TISLD+GLVYVRRVQ+TPS+VYFCGPE+NVSNRV+R + IDNF+R+SFVDE+ EK+ Sbjct: 355 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 414 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 ST++ R + T +YKRILSTL+NGI+IG K+FE LAFSSSQLR+NS WMFA Sbjct: 415 STNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRK 468 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 G+TAA IR WMGNF IRNVAKYAAR GQSFSSS ETL+V + EI+ IPD++I +DG + Sbjct: 469 GLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIK 527 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 YVF DGIGKIS+EFA++VA KC +K TPSAFQIR GG+KGVVA+DPTS KLSLRKSM Sbjct: 528 YVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSME 587 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D FEKKQ+E VDQL+ +LTDPL Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLE 647 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF GR Sbjct: 648 AQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGR 707 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523 SMMGCLDETRTL YGQVFVQ S G R +R I+ GKVIVAKNPC Sbjct: 708 SMMGCLDETRTLNYGQVFVQFS--GSRS---------------ERRFIVQGKVIVAKNPC 750 Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703 LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP + Sbjct: 751 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYK 810 Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883 Q+ PMDY+PA + LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S C Sbjct: 811 QIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPC 870 Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063 +ELA LFSIAVDFPKTGVPAEIP L VKEFPDFMEK DKP+Y+S+ VIGKLFREVK++A Sbjct: 871 LELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLA 930 Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243 P IK T+E + YD DMEV+GF DYID+AF+YK +YD+KLGNLMDYYG+KTE+EI Sbjct: 931 PNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEI 990 Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423 LSG IMK SR F +++DA++I AVR+L+KEAR+WF+ K G+EL + DD YAKASAWY+ Sbjct: 991 LSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYY 1049 Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQFRFGLRL 3600 VTYH YWG YN+G++RDHFLSFPWCVY+KLI IK++K + + +L+ SLE++F+ G L Sbjct: 1050 VTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109 >gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus] Length = 1110 Score = 1458 bits (3774), Expect = 0.0 Identities = 747/1139 (65%), Positives = 882/1139 (77%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MGRTIQV GFP V+AE VK FLENYTGEGTV AL+++ K R R++A VQFT+ Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGR---RAYARVQFTNIRC 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I L RLYYGTSYLK E DIV PRT +E L+FGCQIS KFS LWK Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 G + G G++K+ F L H +EYK+ LSY++IWQI L + + S+K L+IQ+ A Sbjct: 118 GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQ--SSKLLVIQLFGA 175 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI++K SG +Y +YF T DDQWVR TDFT S IGQSS++CL+L Y +LP Sbjct: 176 PRIYKK---LSGSVY-----SYFMVTQDDQWVRTTDFT-QSLIGQSSSLCLQLPYGMRLP 226 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 R+NF YKE E F LE+G FSH DLVPIV PP + LPY +LFK+ SLVQ G L Sbjct: 227 NFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIK-LPYTLLFKVCSLVQTGCL 285 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 GP LD +FF LV+P+ + +IE ALEKL + K+ CY P WL+EQY +Y TSK P+S Sbjct: 286 PGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKS 345 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 I LDDGLVYV RVQVTP++VYF GPEVNVSNRV+RHYR IDNF+RVSFVDE+W+KM Sbjct: 346 PAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMY 405 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 STDLSPRV ++ K T LY+R++S L++G+ IG++KF+ LAFSSSQLRDNSLWMFAP + Sbjct: 406 STDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTD 465 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 G+ A IREWMG+F IRNVAKYAAR GQSF SS ETL+V + EI+ I DVK +GTE Sbjct: 466 GLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEE-IQDVK---NGTE 521 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 Y FSDGIGKIS +FAR+VA KCG++SSTPSAFQIRYGGYKGVVAVDP+S KKLSLR SM Sbjct: 522 YTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSML 581 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY+S+NT LDVL WSK+QPCFLNRQ+ITLLSTLGV+D +FEK+Q+EAV QLD +L DP+R Sbjct: 582 KYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMR 641 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 AQEAL++MSPGEN ++LKEMLKCGY+PD EPFLSMMLQTFRASKLL+LR K R+F P R Sbjct: 642 AQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKAR 701 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523 MMGCLDET L+YGQVFV+ S A R + + NE R + GKV+VAKNPC Sbjct: 702 QMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANE---RFDPVRGKVVVAKNPC 758 Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703 LHPGDVRVL AV+VP L+HMVDCVVFP+ GKRPHPNECSGSDLDGDIYFV WD +LIP + Sbjct: 759 LHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTK 818 Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883 QV+PMDY PA + LDHDVTIEEV++YFTNYIVNDSLGIIANAHT FADKEPL A S C Sbjct: 819 QVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPC 878 Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063 +ELA LFSIAVDF KTG+PAEIP HL VKE+PDFMEK DK Y S RVIGKLFREVKDIA Sbjct: 879 LELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIA 938 Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243 PQ S +SFTKEVAR SYD DMEVDGFED+IDEAF +K EYD+KLGNLM+YYG+KTE+E+ Sbjct: 939 PQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEV 998 Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423 LSG IMK S+ FDRRKDA+AIGAAVR+L+ EAR+WF K GTE DD+YAKASAWY+ Sbjct: 999 LSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF--KKGTE----ADDVYAKASAWYY 1052 Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRL 3600 VTYH Y+GCYN+G+ RDH+LSFPWCVY+KL+ IK+D NS++ S SL QF +R+ Sbjct: 1053 VTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKD-NSRRASQMASLRRQFNDRVRI 1110 >ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine max] gi|571439308|ref|XP_006574822.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Glycine max] gi|571439310|ref|XP_006574823.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X3 [Glycine max] Length = 1125 Score = 1452 bits (3760), Expect = 0.0 Identities = 746/1145 (65%), Positives = 892/1145 (77%), Gaps = 5/1145 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TI++ GFP+SV+ VK F+E YTGEGTV+A+KLR K PR+FA++QFT+ S Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRV--PRAFAIIQFTTANS 58 Query: 364 AEQISSLIN---QRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSS 534 A + S N + L YGTSYLK EM+RDIVP+PR + SL+ L FGCQIS+ +FS Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118 Query: 535 LWKGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQV 714 LWK D I+N G G+RK+ FL +H +++YKL+LSY++IW+I+L PR+ +T++LLIQ+ Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNE--TTRYLLIQL 176 Query: 715 STAPRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNC 894 APR+FE + +S +I+ DP FN+F+D PD+QW+RA DFT S IGQSSAICLEL Sbjct: 177 LGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGR 236 Query: 895 KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074 +LP RENF Y+E E ++ L++G FS LVPIV PP G ++ YDILFK+NSLVQ+ Sbjct: 237 QLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPP-LGVKISYDILFKVNSLVQH 295 Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254 L+GP LD F+RLV P +P IE ALEK+ +SK+ CYEP KWL +QY YL SK+ Sbjct: 296 ACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNH 355 Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434 PRS ISLD GLVYVRRVQ+TP KVYFCGPE+NVSNRV+RH+R IDNF+RVSFVDE+ + Sbjct: 356 PRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELD 415 Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614 K+ STDLS R K T++Y RILS LKNGI++G+KKFE LAFSSSQLR+NSLWMFA Sbjct: 416 KLFSTDLSSR----SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471 Query: 1615 PWN-GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVK-IE 1788 P G TAA IR+WMGNF IRNVAKYAAR GQSF SS ETL+V R E++ IPDVK + Sbjct: 472 PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEI-IPDVKKLT 530 Query: 1789 RDGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSL 1968 DG EYVFSDGIGKIS EFA++VA KCG TPSAFQIRYGGYKGVVAVDP S KLSL Sbjct: 531 YDGNEYVFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPKSCYKLSL 589 Query: 1969 RKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMIL 2148 RKSM KY S+NT LDVL SKFQPC+LNRQLI+LLSTLG++D +FEKKQ+E V+QL+ IL Sbjct: 590 RKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTIL 649 Query: 2149 TDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIF 2328 TD L+AQE L++MS GE NVLKEML CGYKP+ EPFLSMMLQTFRASKLLELR K+RIF Sbjct: 650 TDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIF 709 Query: 2329 EPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIV 2508 P GR+MMGCLDETRTLEYGQVFVQ S Q ++ FF + ++ ++ GKV+V Sbjct: 710 IPKGRAMMGCLDETRTLEYGQVFVQFS-NNRLQNLSDDFFSYDL----PKNYMVKGKVVV 764 Query: 2509 AKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPE 2688 AKNPCLHPGDVRVLQAV+VP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD E Sbjct: 765 AKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHE 824 Query: 2689 LIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 2868 LIP R + PMDYT +V LDHDV IEEV+EYF NYIVNDSLGIIANAHT FADKE LKA Sbjct: 825 LIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKA 884 Query: 2869 ESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFRE 3048 S+ C++LA LFS AVDFPKTGVPA IP LHVKE+PDFMEK DKPTY+SH VIGKLFRE Sbjct: 885 MSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFRE 944 Query: 3049 VKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIK 3228 VK+I+ A I SFTK VAR SYD +MEVDGF DY+D+AFY+K YD+KLGNLMDYYGIK Sbjct: 945 VKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIK 1004 Query: 3229 TESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKA 3408 TE+EIL G+IMK S+ F++R+DA+AI AVR+L+KEAR WF+ + ++ S D+YAKA Sbjct: 1005 TEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKA 1064 Query: 3409 SAWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRF 3588 SAWYHVTYH YWGCYN+G++RDH+LSF WCVY L+ IK++K S +RS SLE F Sbjct: 1065 SAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRS---SLEYSFS- 1120 Query: 3589 GLRLS 3603 GLRLS Sbjct: 1121 GLRLS 1125 >ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus] gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus] Length = 1130 Score = 1446 bits (3744), Expect = 0.0 Identities = 734/1138 (64%), Positives = 885/1138 (77%), Gaps = 2/1138 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TI +SGFPS V+A+ VK FLE +TG GTVYA+K+R PK R R +A+VQFTS Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPK--RGGGRLYAIVQFTSATQ 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I SL NQRL+YG+SYLK + DIVPKPRT M +LE L FGCQ+S EKF LW+ Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 G ++ G G+RK+ F L + +EY+L+LSY+ IWQIQL PR + S K+LLIQ+S A Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQ--SMKYLLIQLSGA 176 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI++K +SG I+ +P N+F++ DDQWVR TDFT+S IGQSS++CL+L +LP Sbjct: 177 PRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLP 236 Query: 904 GIRENFHNYKEDEGRF-LLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080 ++NF Y+E E F L++ + FS DL PIV+ + LPY ILFKIN+LVQ G Sbjct: 237 PFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS--RSHVLPYKILFKINALVQYGC 294 Query: 1081 LSGPTLDSTFFRLVHPS-NIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257 + P LD++F+RLV + +E ALEKL H K+ Y+P +L EQY KY S+H P Sbjct: 295 IPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPP 352 Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437 S ISLDDGLVYVRRVQ+TP KV+FCGPEVNVSNRV+RH+ IDNF+RVSFVDE+W+K Sbjct: 353 NSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDK 412 Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617 MRSTDL PR+ + + TD+Y+RILS LKNGI+IG+K F+ LAFSSSQLRDNSLWMFA Sbjct: 413 MRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFAS 472 Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797 I AA IR WMG+FR I+N AKYAAR GQSF SS E L+V +E + IPD+++++ Sbjct: 473 GPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGE 531 Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977 +YVFSDGIGKISS+FA+ VA KCG ++ PSAFQIRYGGYKGVVAVDP S KLSLRKS Sbjct: 532 IKYVFSDGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKS 590 Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157 M K+ S+NT LDVL SK+QPCFLNRQLITL+STLGV D IFEKKQ EAV+QLD ILTDP Sbjct: 591 MCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDP 650 Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337 L+AQEALE+MSPGEN N+LKEMLKCGY+PD EP+LSMMLQTFRASKLLELR K+RIF PN Sbjct: 651 LKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPN 710 Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517 GR+MMGCLDETRTLEYGQVFVQ+S HR + F R E L+I G V VAKN Sbjct: 711 GRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGRE---HHLVIEGNVTVAKN 767 Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697 PCLHPGDVRVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP Sbjct: 768 PCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP 827 Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877 RQ+ PMDYTPA LD DVT E++QEYF NY+VNDSLGIIANAHTAFADKE KA S+ Sbjct: 828 SRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSS 887 Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057 C+ELA LFS+AVDFPKTGVPA IPSHL+VKEFPDFMEK D+P+YES++VIGKLFR VKD Sbjct: 888 PCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKD 947 Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237 IAP S I+SFT++VAR YD DMEV+GFEDY+++AFY+K YD+KLGNL+DYYGIK+E+ Sbjct: 948 IAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEA 1007 Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417 E+LSGSIM+ S+ F RR+DA+AI AVR+L+KEARTWF+ + G + S DDL+AKASAW Sbjct: 1008 EVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGAD--SNSDDLFAKASAW 1065 Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591 Y+VTYH YWGCYN+G+ RDH+LSFPWCVY+KL+ IK + N ++R L + RFG Sbjct: 1066 YYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIK-ENNLRRRERAARLASFDRFG 1122 >ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp. vesca] Length = 1119 Score = 1442 bits (3734), Expect = 0.0 Identities = 744/1140 (65%), Positives = 890/1140 (78%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQ+ GFPS +AE +K FLE +TGEG+V+ALKLR K S R +A++QF S Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAK---SGGRFYAIIQFQSISQ 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE+I SL N RL+YG SYL DIVPKPRT + SL LH GCQ++++KFS LW Sbjct: 58 AEKIISLANARLWYGRSYLNA-RPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 + ++ GFG+R L+F L + Y+L LSY++IWQI+L H R R S K+L+IQ+ Sbjct: 117 TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGR--SAKYLVIQLYGN 174 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+++ +CSSG G NYFRD PDD WVR TDFT SCIGQSS++CL L+ + +LP Sbjct: 175 PRIYQQEVCSSGG-NGYEDMNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELP 231 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGYL 1083 ENF YK+ +G+F+LE+GSTFS DLVPIV P G +LPYDILFKIN LVQ G L Sbjct: 232 DFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPA-GIDLPYDILFKINLLVQQGCL 290 Query: 1084 SGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPRS 1263 SGPTLD+ F+RLV P I IE AL+KLS+ K+SCYEP WL E+Y KY+ SK P+ Sbjct: 291 SGPTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKP 350 Query: 1264 STISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKMR 1443 + ISLD GLVYVRRVQ+TPSKVYF GPEVNVSNR++R Y IDNF+RVSFVDE+ EK+ Sbjct: 351 ALISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLY 410 Query: 1444 STDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPWN 1623 STDLSPR T + T +Y R+LS L++GI++G+KKFE LAFSSSQLR+NSLWMFAP + Sbjct: 411 STDLSPRTSTRK----TRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTD 466 Query: 1624 GITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTE 1803 +A IR MG+FR IRNVAKYAAR GQSF SS ETL+V R+E++ IPDV + G + Sbjct: 467 EDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEV-IPDVTVNSCGIK 525 Query: 1804 YVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMS 1983 YVFSDGIGKIS++FA RVA KCG K+ TPSAFQIRYGGYKGVVAVDPTS KLSLRKSMS Sbjct: 526 YVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMS 585 Query: 1984 KYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLR 2163 KY SENT LDVL SK+QPCFLNRQLITLLSTL V+D +F KKQ+ AV QL+ ILTDPL+ Sbjct: 586 KYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLK 645 Query: 2164 AQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGR 2343 A+EAL++MS GE+ NVLKE+L CGYKP+ EPFLSMMLQTFRASKLLELR KTRIF P+GR Sbjct: 646 AEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGR 705 Query: 2344 SMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNPC 2523 +MMGCLDETRTLEYGQVFVQ S RQ + I + LD II GKV+VAKNPC Sbjct: 706 AMMGCLDETRTLEYGQVFVQFSGKRRRQLFDD---ICIHSSLDS-CFIIEGKVVVAKNPC 761 Query: 2524 LHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRR 2703 LHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP + Sbjct: 762 LHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPK 821 Query: 2704 QVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNAC 2883 Q++PMDYTPA + +D DVTIEEV+EYF NYIVNDSLGIIANAHT FAD + KA S+ C Sbjct: 822 QIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPC 881 Query: 2884 IELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIA 3063 ++LA LFSIAVDFPKTGVPAEIP L+ KE+PDFMEK DK TY SH VIG+LFREVKDIA Sbjct: 882 LQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIA 941 Query: 3064 PQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEI 3243 P S I SFT++VA YD DMEVDGFEDY+++AFY+KG YD+KLGN++DYYGIKTE+EI Sbjct: 942 PHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEI 1001 Query: 3244 LSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAWYH 3423 LSGSIM S+ F +R+DADAI AV++L+KEAR WF+ K+ T + S DD+YAKASAWYH Sbjct: 1002 LSGSIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKD-TGIDSGDDDVYAKASAWYH 1060 Query: 3424 VTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFGLRLS 3603 VTYH Y+G YN+G++R HF+SFPWCV++KL +IK++K ++ R L SLEN+ R+GLR S Sbjct: 1061 VTYHPNYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQAR-LISSLENRLRYGLRFS 1119 >ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] gi|548853371|gb|ERN11375.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] Length = 1210 Score = 1426 bits (3692), Expect = 0.0 Identities = 725/1141 (63%), Positives = 871/1141 (76%), Gaps = 12/1141 (1%) Frame = +1 Query: 187 GRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPESA 366 GRT+QVSGFP AE VK FLE+ TG GTVY LK+R K+ + N R FA+VQFT+ +SA Sbjct: 75 GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKS-KPNSRVFAIVQFTTSKSA 133 Query: 367 EQISSLINQ--RLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540 E I SL Q LY+G SY+ V M+ DIVP PR LE L+FG QISEE F+ LW Sbjct: 134 EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193 Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720 + + GFGL+K+ F L H ++YKLDL Y++IWQIQLR P + T++L++Q+ Sbjct: 194 SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTE--GTRYLVLQMQG 251 Query: 721 APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900 APRIF+KPL S DIY P FNY++D PD+QWVR+ DFT S IGQSS++CL L ++ Sbjct: 252 APRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI 311 Query: 901 PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQNGY 1080 P IRENF YKE G F L++GS+FSH + LVPIV PP Q + LPY ILF++NSLVQNG+ Sbjct: 312 PNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIK-LPYKILFRVNSLVQNGF 370 Query: 1081 LSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTPR 1260 L GPTLD+ F+ L++ +P +ER+LE +S + C EP KWL+EQY KY P Sbjct: 371 LVGPTLDTEFYNLLN--GLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPS 428 Query: 1261 SSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEKM 1440 + ISL+ GLVYV RVQVTPSKVYF GPEVNVSNRV+R + IDNF+R+SF+DED+ + Sbjct: 429 PAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSI 488 Query: 1441 RSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAPW 1620 RSTDLS R+ + ++KHT +Y R+LSTLKNGI+IG+KKFE LAFSSSQLRDNS WMF+P Sbjct: 489 RSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPI 548 Query: 1621 NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGT 1800 +GITAA IR+WMG+F IRNVAK AAR GQSF SS ETL V E++ I D+K Sbjct: 549 DGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVER-ISDIK----NG 603 Query: 1801 EYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSM 1980 +YVFSDGIGKIS EFA++VA+KCG TPSAFQIRYGGYKGVVAVDPTS KLSLR SM Sbjct: 604 KYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSM 663 Query: 1981 SKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPL 2160 KY S NT LDVL +SKFQPCFLNRQ+ITLLSTLGV+D +FE KQK+AV QLD IL DP Sbjct: 664 RKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPE 723 Query: 2161 RAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNG 2340 A EALE+MSPGENVNVLKEML CGY PD+EPFLSMMLQTFR KL EL+ KTRIF PNG Sbjct: 724 SAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNG 783 Query: 2341 RSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKNP 2520 RSMMGCLDET LEYGQVFVQ S G+R+ H NE+ DQR +++GKVIVAKNP Sbjct: 784 RSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNP 843 Query: 2521 CLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPR 2700 CLHPGDVR+L A++VPAL HMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDP LIP Sbjct: 844 CLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPC 903 Query: 2701 RQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNA 2880 Q PM+Y PA + LDH+VTIEE++EYFTNY++NDSLGIIANAHT FADKEP+KA+S Sbjct: 904 HQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTP 963 Query: 2881 CIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDI 3060 C++LA LFS+AVDFPKTGVPA+IP HL+VKE+PDFM+K DKPTY+S RVIGKLFREVKD+ Sbjct: 964 CVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDL 1023 Query: 3061 APQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESE 3240 P S I SFTK VA SYD DMEVDGFE Y+D+A +YK EYDFKL LMD+YGIKTE+E Sbjct: 1024 PPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAE 1083 Query: 3241 ILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELS---SQGDDLYAKAS 3411 I+SG+I+ ++ F +R+DA+AI A+R+L+KE R WF K S DD+YAKAS Sbjct: 1084 IVSGNILSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKAS 1143 Query: 3412 AWYHVTYHEKYWGCY--NDGLDRDHFLSFPWCVYNKLINIK-----RDKNSKKRSLNQSL 3570 AWYH+TYH +YWG Y DG +R HF+SFPWC+Y+KLI+IK R +NS+ SL ++ Sbjct: 1144 AWYHITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTM 1203 Query: 3571 E 3573 E Sbjct: 1204 E 1204 >emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] Length = 1116 Score = 1422 bits (3682), Expect = 0.0 Identities = 734/1126 (65%), Positives = 872/1126 (77%), Gaps = 4/1126 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP +SAE VK FLEN+TG GTVYAL+++Q K R R+FA VQF + +S Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGR---RAFAKVQFANNKS 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I L ++ LYYG SYLK EMK DIV +PRT + ++ L+FGCQIS++KF+ L Sbjct: 58 AEFIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS 116 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 D + G GL+K+ F L+H +YKL LSY++IWQ+ L P + + +FLL+Q+ A Sbjct: 117 K-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQ--NAQFLLLQLFGA 173 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+++ D +++F++TPDDQWVR TDFT S IG SS++CLE +LP Sbjct: 174 PRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFRNGVQLP 224 Query: 904 GIRENFHNYKEDEGRFLLESGSTFS--HRMDLVPIVEPPPQGRELPYDILFKINSLVQNG 1077 E+F YKE +F+L++G TFS ++ LVPIV P +G ELPY ILFKI+SL+Q+G Sbjct: 225 NFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLP-EGIELPYKILFKISSLIQHG 283 Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257 G L+ FF+LV P + IE ALEKL + K+ CY+PV+WL EQY +YL + P Sbjct: 284 CFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLP 343 Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437 +S I+LDDGLVYVRRV VTP KVYFCGPEVNVSNRV+R+Y I+NF+RVSFVDE+WEK Sbjct: 344 KSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEK 403 Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617 + STDL PR T + TD+Y+RILSTL+NG IIG+K+FE LAFSSSQLRDNS+WMFA Sbjct: 404 IHSTDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFAS 462 Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797 G+TA IR WMG+FR IRNVAKYAAR GQSF SS ETL+V RHE++ IPDV G Sbjct: 463 RPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVACSLHG 521 Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977 T Y+FSDGIGKIS++FA RV IKCG++ TPS+FQIRYGGYKGVVAVDP S KLSLRKS Sbjct: 522 TNYIFSDGIGKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKS 580 Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157 M KY S N LDVL WSK+QPC+LNRQL+TLLSTLGV D + E+KQ EAVDQLD IL D Sbjct: 581 MLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDS 640 Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337 L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF PN Sbjct: 641 LKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPN 700 Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQF--HANPFFIRNENELDQRSLIIMGKVIVA 2511 GR+MMGCLDE+RTLEYGQVFVQ S AG RQF ++PF N++ I+ G V+VA Sbjct: 701 GRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPF---NDSGSANCDFILKGNVVVA 757 Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691 KNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+L Sbjct: 758 KNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDL 817 Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871 IP RQV+ MDYTPA + LDHDVTIEEV+EYFTNYI+NDSLGIIANAH FAD+EP A Sbjct: 818 IPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAM 877 Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051 S+ C +LA LFSIAVDFPKTGVPAEIPS L KE+PDFMEK DKPTY S +VIGKLF++V Sbjct: 878 SDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKV 937 Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231 K+ PQAS I +FT++VAR SYDSDM VDGFEDYIDEAFYYK EYD KLGNLMDYYGIKT Sbjct: 938 KNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKT 997 Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411 E+EILSG IMK S+ FDRRKDA+AIG AVR L+KEAR WF R+ S DD+ AKAS Sbjct: 998 EAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRR------SDIDDMLAKAS 1051 Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKK 3549 AWYHVTYH YWG YN+GL RDHF+SFPWCVY++LI IK+ K K+ Sbjct: 1052 AWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKR 1097 >gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa] gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa] Length = 1117 Score = 1422 bits (3680), Expect = 0.0 Identities = 737/1138 (64%), Positives = 878/1138 (77%), Gaps = 6/1138 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP +SAE VK FLEN+TG GTVYAL+++Q K R R+FA VQF + +S Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGR---RAFAKVQFANNKS 57 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 AE I L ++ LYYG SYLK EMK IV +PRT + ++ L+FGCQIS++KF+ L Sbjct: 58 AEIIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 + +I G GL+K+ F L++ +YKL LSY++IWQ+ L P + +FLL+Q+S A Sbjct: 117 KVVSI-KFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQ--KAQFLLLQLSGA 173 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 PRI+++ D +++F++TPDDQWVR TDFT S IG SS++CLE +LP Sbjct: 174 PRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNGVRLP 224 Query: 904 GIRENFHNYKEDEGRFLLESGSTFSH---RMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074 E+F YKE + +L++G TFS ++ LVPIV P +G ELPY ILFKI+SL+Q+ Sbjct: 225 NFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLP-EGIELPYKILFKISSLIQH 283 Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254 G G L+ FF+LV P + IE ALEKL + K+ CY+PV+WL EQY +YL + Sbjct: 284 GCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQL 343 Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434 P+S +I+LDDGLVYVRRV VTP KVYFCGPEVNVSNRV+R+Y IDNF+RVSFVDE+WE Sbjct: 344 PKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWE 403 Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614 K+ STDL PR T + TD+Y RILSTL+NG +IG+KKFE LAFSSSQLRDNS+WMFA Sbjct: 404 KIHSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 462 Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794 G+TA IR WMG F+ IRNVAKYAAR GQSF SS ETL+V RHE++ IPDV Sbjct: 463 SRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVVCSLH 521 Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974 GT Y+FSDGIGKIS++FARRVA+KCG++ TPS FQIRYGGYKGVVAVDP S KLSLR Sbjct: 522 GTNYIFSDGIGKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRN 580 Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154 SM KY S N LDVL WSK+QPC+LNRQL+TLLSTLGV+D +FE+KQ EAVDQLD IL D Sbjct: 581 SMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHD 640 Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334 L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF P Sbjct: 641 TLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIP 700 Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFH--ANPFFIRNENELDQRSLIIMGKVIV 2508 NGR+MMGCLDE+RTLEYGQVFVQ + G RQF+ ++PF N++ I+ G V+V Sbjct: 701 NGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPF---NDSGSTNCDFILEGNVVV 757 Query: 2509 AKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPE 2688 AKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+ Sbjct: 758 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPD 817 Query: 2689 LIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 2868 L+P RQ +PMDYTPA S LDHDVTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A Sbjct: 818 LVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 877 Query: 2869 ESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFRE 3048 S+ C +LA LFSIAVDFPKTGVPAEIPS L KE+PDFMEK DKPTY S +VIGKLF++ Sbjct: 878 MSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQK 937 Query: 3049 VKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIK 3228 VKD PQAS I +FT +VAR SYD DM V+GFEDYIDEAFYYK EYD KLGNLMDYYGIK Sbjct: 938 VKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIK 997 Query: 3229 TESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKA 3408 TE+EILSG IMK S+ FDRRKDADAIG AVR+L+KEARTWF R+ S DD+ AKA Sbjct: 998 TEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR------SDIDDMLAKA 1051 Query: 3409 SAWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLN-QSLENQ 3579 SAWYHVTYH YWG YN+GL RDHF+SFPWC+Y++LI IK+ K KK L+ SL NQ Sbjct: 1052 SAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQ 1109 >emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri] Length = 1107 Score = 1412 bits (3655), Expect = 0.0 Identities = 734/1145 (64%), Positives = 870/1145 (75%), Gaps = 5/1145 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP+ VSAE VK FLE TG GTVYA+K+RQPK + PR FA+VQFT+ Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNERY 58 Query: 364 AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540 A QI + +RLYYG SYL E+ +DIVPKPR + ++ ++FGCQ+S +KF +LW Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118 Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720 D ++ G G+RKL F + +Y+L+LSY++IWQI L P+ R S+KFL+IQV Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176 Query: 721 APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900 AP+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + + Sbjct: 177 APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234 Query: 901 PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQN 1074 P RENF NY E FL+ESGS++S + LVP+V+PPP G +LP++ILFK+N+LVQN Sbjct: 235 PDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293 Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254 L GP LD ++L++P I+ LEKL H +SCYEP +WLR+QY + + Sbjct: 294 ACLPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKL 353 Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434 P S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY I+NF+RVSFVDED E Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413 Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614 K+RS DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFA Sbjct: 414 KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 470 Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794 P +G+T+A IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+I Sbjct: 471 PIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISL 529 Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974 GT YVFSDGIGKIS+EFARRVA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRK Sbjct: 530 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589 Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154 SMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV+D +F+KKQ+E VD+LD ILTD Sbjct: 590 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTD 649 Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334 PL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF Sbjct: 650 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709 Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAK 2514 GRSMMGCLDETRTLEYGQV VQ S + R II G V+VAK Sbjct: 710 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753 Query: 2515 NPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELI 2694 NPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELI Sbjct: 754 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813 Query: 2695 PRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAES 2874 P R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S Sbjct: 814 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873 Query: 2875 NACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVK 3054 + CIELA FS+AVDFPKTGV AEIP HLHVKE+PDFMEK DKPTYES VIGKLFREVK Sbjct: 874 DPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933 Query: 3055 DIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTE 3234 + AP IKSFT +VA SYD DMEVDGFE+Y+DEAF+YK YDFKLGNLMDYYGIKTE Sbjct: 934 ERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTE 993 Query: 3235 SEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASA 3414 +EILSG IM+ S+ F +R+DA++IG AVRAL+KE + F N TE ++ AKASA Sbjct: 994 AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF---NATEEENES----AKASA 1046 Query: 3415 WYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG- 3591 WYHVTYH YWG YN+GL+RDHFL F WCVY+KL+ IK+ N+ +R ++LE R G Sbjct: 1047 WYHVTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKK-TNAGRRQRQETLE---RLGH 1102 Query: 3592 -LRLS 3603 LRLS Sbjct: 1103 VLRLS 1107 >ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella] gi|482575337|gb|EOA39524.1| hypothetical protein CARUB_v10008144mg [Capsella rubella] Length = 1107 Score = 1411 bits (3653), Expect = 0.0 Identities = 723/1132 (63%), Positives = 868/1132 (76%), Gaps = 2/1132 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP V+ + VK+FLE TG GTVYA+K+RQPK R PR FA+VQFTS Sbjct: 1 MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPK--RGGPRVFAIVQFTSERH 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 A I ++ +RLYYG SYLK EM++DIVPKPR + S+ ++FGCQ+S +K +LW Sbjct: 59 ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 + ++ G G+RKL F ++ +Y+L+LSY++IWQI L P+ S+KFL+IQV A Sbjct: 119 AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGG--SSKFLVIQVIGA 176 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 P+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + +P Sbjct: 177 PKIFEKEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP 234 Query: 904 GIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQNG 1077 RENF NY E FL++SGS++S + LVP+V+PPP G +LP++ILFK+N+LVQN Sbjct: 235 DFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPP-GFDLPFEILFKVNTLVQNA 293 Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257 L GP LD F++L++P I+ +LEKL H + CYEP +WLRE+Y K +SK P Sbjct: 294 CLPGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLP 353 Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437 S TISLDDGLVY+ RV VTP++VYF GPEVNVSNRV+RHY I+NF+R+SFVDED EK Sbjct: 354 LSPTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEK 413 Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617 + S DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFAP Sbjct: 414 IHSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470 Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797 + +TAA IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+ Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEAMYLD 529 Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977 T YVFSDGIGKIS+EFAR+VA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRKS Sbjct: 530 TRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589 Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157 MSK+ S NT LDVL WSK+QPC+LNRQ+ITLLSTLGV+D +FEKKQ+E VD+LD ILTDP Sbjct: 590 MSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDP 649 Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337 L A EAL +M+PGEN N+LK++L CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF P Sbjct: 650 LEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPG 709 Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517 GRSMMGCLDETRTLEYGQV VQ S NP + + II G V+VAKN Sbjct: 710 GRSMMGCLDETRTLEYGQVVVQYS---------NP-------TMPGKRYIITGPVVVAKN 753 Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697 PCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYF+ WD ELIP Sbjct: 754 PCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIP 813 Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877 R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S+ Sbjct: 814 PRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 873 Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057 CIELA FSIAVDFPKTG+ AEIP HL+VKE+PDFM+K DKPTYES VIGKLFREVK+ Sbjct: 874 PCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKE 933 Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237 AP I+SFT +VA SYD DMEV+GFE+YIDEAF++KG YD++LGNLMDYYGIKTE+ Sbjct: 934 RAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEA 993 Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417 EILSG IM+ S+ F +R+DA++IG AVRAL+KEA +WF N E + D+ AKASAW Sbjct: 994 EILSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSWF---NNAEDKNDFDE-SAKASAW 1049 Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLE 3573 YHVTYH YWG YN+GL+RDHFLSF WCVY+KL+ IK+ N +R ++LE Sbjct: 1050 YHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKK-ANVGRRQRQEALE 1100 >ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] Length = 1107 Score = 1408 bits (3644), Expect = 0.0 Identities = 732/1145 (63%), Positives = 870/1145 (75%), Gaps = 5/1145 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP+ VSAE VK FLE TG GTVYA+K+RQPK + PR FA+VQFT+ Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNEIY 58 Query: 364 AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540 A QI + +RLYYG SYL E+++DIVPKPR + ++ ++FGCQ+S + +LW Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118 Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720 D ++ G G+RKL F + +Y+L+LSY++IWQI L P+ R S+KFL+IQV Sbjct: 119 SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176 Query: 721 APRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKL 900 AP+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + + Sbjct: 177 APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234 Query: 901 PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQN 1074 P RENF NY E +L+ESGS++S + LVP+V+PPP G +LP++ILFK+N+LVQN Sbjct: 235 PDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293 Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254 L GP LD ++L++P I I+ LEKL + +SCYEP +WLR+QY + + Sbjct: 294 ACLPGPALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353 Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434 P S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY I+NF+RVSFVDED E Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413 Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614 K+RS DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFA Sbjct: 414 KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 470 Query: 1615 PWNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERD 1794 P G+T+A IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+I Sbjct: 471 PIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISL 529 Query: 1795 GTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRK 1974 GT YVFSDGIGKIS+EFARRVA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRK Sbjct: 530 GTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRK 589 Query: 1975 SMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTD 2154 SMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGVED +FEKKQ+E VD+LD ILTD Sbjct: 590 SMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTD 649 Query: 2155 PLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEP 2334 PL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF Sbjct: 650 PLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIS 709 Query: 2335 NGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAK 2514 GRSMMGCLDETRTLEYGQV VQ S + R II G V+VAK Sbjct: 710 GGRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAK 753 Query: 2515 NPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELI 2694 NPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELI Sbjct: 754 NPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELI 813 Query: 2695 PRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAES 2874 P R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S Sbjct: 814 PPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFS 873 Query: 2875 NACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVK 3054 + CIELA FS+AVDFPKTGV AEIP HL+VKE+PDFMEK DKPTYES VIGKLFREVK Sbjct: 874 DPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933 Query: 3055 DIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTE 3234 + AP IKSFT +VA SYD DMEVDGFE+Y+DEAF+YK YDFKLGNLMDYYGIKTE Sbjct: 934 ERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTE 993 Query: 3235 SEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASA 3414 +EILSG IM+ S+ F +R+DA++IG AVRAL+KE + F N TE ++ AKASA Sbjct: 994 AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF---NATEEENES----AKASA 1046 Query: 3415 WYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG- 3591 WYH+TYH YWG YN+GL+RDHFLSF WCVY+KL+ IK+ N+ +R ++LE R G Sbjct: 1047 WYHITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKK-TNAGRRQRQETLE---RLGH 1102 Query: 3592 -LRLS 3603 LRLS Sbjct: 1103 VLRLS 1107 >ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName: Full=RNA-directed RNA polymerase 1 gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] Length = 1107 Score = 1406 bits (3640), Expect = 0.0 Identities = 726/1140 (63%), Positives = 858/1140 (75%), Gaps = 4/1140 (0%) Frame = +1 Query: 184 MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPES 363 MG+TIQV GFP+ VSAE VK FLE TG GTVYA+K+RQPK + PR +A+VQFTS Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVYAIVQFTSERH 58 Query: 364 AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 543 I + +RLYYG SYLK E+++DIVPKPR + ++ + FGCQ+S +KF +LW Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118 Query: 544 GLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSTA 723 D ++ G G+RKL F + +Y+L+LSY++IWQI L P+ R S+KFL+IQV A Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIGA 176 Query: 724 PRIFEKPLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNCKLP 903 P+IFEK ++G +++ D D+QW+R TDFT+SSCIGQS+A CLEL + +P Sbjct: 177 PKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 234 Query: 904 GIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPQGRELPYDILFKINSLVQNG 1077 RENF NY E FL+ESGS++S + LVP+V+PPP G LP++ILFK+N+LVQN Sbjct: 235 DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPP-GFSLPFEILFKLNTLVQNA 293 Query: 1078 YLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHTP 1257 LSGP LD F+RL++ I+ LEKL H + CYEP WLR++Y K+++ P Sbjct: 294 CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 353 Query: 1258 RSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWEK 1437 S TISLDDGLVY+ RVQVTP++VYF GPEVNVSNRV+RHY I+NF+RVSFVDED EK Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413 Query: 1438 MRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFAP 1617 +RS DLSPR T ++ T LY RI S L++GI+IG+KKFE LAFSSSQLR+NS WMFAP Sbjct: 414 VRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470 Query: 1618 WNGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDG 1797 + ITAA IR WMG+F IRNVAKYAAR GQSFSSS ETL V EI+ IPDV+I G Sbjct: 471 IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLG 529 Query: 1798 TEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKS 1977 T YVFSDGIGKIS+EFAR+VA KCG+ +PSAFQIRYGGYKGVVAVDP S KKLSLRKS Sbjct: 530 TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 589 Query: 1978 MSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDP 2157 MSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV D +FEKKQ+E VD+LD ILT P Sbjct: 590 MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 649 Query: 2158 LRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPN 2337 L A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF Sbjct: 650 LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 709 Query: 2338 GRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVAKN 2517 GRSMMGCLDETRTLEYGQV VQ S + R II G V+VAKN Sbjct: 710 GRSMMGCLDETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKN 753 Query: 2518 PCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIP 2697 PCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P Sbjct: 754 PCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVP 813 Query: 2698 RRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESN 2877 R +PMDYTP + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA S+ Sbjct: 814 PRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSD 873 Query: 2878 ACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREVKD 3057 CIELA FS AVDFPKTGV A IP HL+VKE+PDFMEK DKPTYES VIGKLFREVK+ Sbjct: 874 PCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKE 933 Query: 3058 IAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTES 3237 AP IKSFT +VA SYD DMEVDGFE+Y+DEAFY K YDFKLGNLMDYYGIKTE+ Sbjct: 934 RAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEA 993 Query: 3238 EILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKASAW 3417 EILSG IM+ S+ F +R+DA++IG AVRAL+KE + F+ E S AKASAW Sbjct: 994 EILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES------AKASAW 1047 Query: 3418 YHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDK--NSKKRSLNQSLENQFRFG 3591 YHVTYH YWG YN+GL+RDHFLSF WCVY+KL+ IK+ +++ + L++ RFG Sbjct: 1048 YHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLRFG 1107 >ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer arietinum] Length = 1126 Score = 1405 bits (3636), Expect = 0.0 Identities = 721/1143 (63%), Positives = 879/1143 (76%), Gaps = 6/1143 (0%) Frame = +1 Query: 190 RTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQPKTTRSNPRSFAVVQFTSPESAE 369 +TI++ GFP+SV VK F+E +TGEG+V A+K+R+ K R++A++QF + A Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQ--RAYAIIQFNTANQAT 62 Query: 370 QISSLINQR---LYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 540 + SL N+ L YG SYLK+ EM RDIVP PRT + SL+ L+FGCQIS+E+FS LW Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122 Query: 541 KGLDAILNVGFGLRKLEFLLTHCHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVST 720 + D +++ G+RK F + H + ++K DLSY++IW+I+ P + + K+LLIQ+ Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK--TAKYLLIQLIG 180 Query: 721 APRIFEK--PLCSSGDIYGDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELSYNC 894 APRIFE P +S ++Y DP NYF+++PDDQW+RA DFT +CIGQSSAICLEL + Sbjct: 181 APRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDR 240 Query: 895 KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPQGRELPYDILFKINSLVQN 1074 P IRE F +Y+E+EG++ LESGS FSH +D+VPIV PP QG +P+DILFK+NSLVQ+ Sbjct: 241 DFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPP-QGIYIPFDILFKVNSLVQH 299 Query: 1075 GYLSGPTLDSTFFRLVHPSNIPVHHIERALEKLSHSKDSCYEPVKWLREQYTKYLTSKHT 1254 G LSG LD+ F+ LV P I V IE ALEK+ +SKD CYEP +WL++QY YL S + Sbjct: 300 GCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYP 359 Query: 1255 PRSSTISLDDGLVYVRRVQVTPSKVYFCGPEVNVSNRVIRHYRGAIDNFIRVSFVDEDWE 1434 +S +ISLD+GLVYVRRVQ+TP KVYFCGPE+NVSNRV+RH+ IDNF+RVSFVDE+ + Sbjct: 360 LQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELD 419 Query: 1435 KMRSTDLSPRVLTNEDKKHTDLYKRILSTLKNGIIIGEKKFEHLAFSSSQLRDNSLWMFA 1614 K+ STDLS R+ T++Y RILS L+NGI+IG+KKFE LAFSSSQLR+NSLWMFA Sbjct: 420 KLYSTDLSSRISVGV---RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFA 476 Query: 1615 PW-NGITAAVIREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIER 1791 P G+TA IR WMG+F IRNVAKYAAR GQSF SS ETL+V R+EI+ IPD +++ Sbjct: 477 PTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEI-IPDAQVKH 535 Query: 1792 DGTEYVFSDGIGKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLR 1971 D EYVFSDGIGKIS EFARRVA KCG STPSAFQIRYGGYKGVVAVDPTS KLSLR Sbjct: 536 DTIEYVFSDGIGKISLEFARRVAKKCGY-DSTPSAFQIRYGGYKGVVAVDPTSSVKLSLR 594 Query: 1972 KSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILT 2151 KSM KY S+NT LDVL SK+QPC+LNRQLITLLSTL VED +FEKKQKEAV+QL+ ILT Sbjct: 595 KSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILT 654 Query: 2152 DPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFE 2331 + L+AQE L++MS GE N+LKEML CGYKP+ EPFLSMMLQTFRASKLLELR KTRIF Sbjct: 655 NSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFI 714 Query: 2332 PNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENELDQRSLIIMGKVIVA 2511 P GR+MMG LDETRTLEYG+VFVQ S + + + + N SL++ GKV+VA Sbjct: 715 PKGRAMMGVLDETRTLEYGEVFVQYS---NNRISSLSYGSAN-------SLVVTGKVVVA 764 Query: 2512 KNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPEL 2691 KNPCLHPGDVRVL+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL Sbjct: 765 KNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPEL 824 Query: 2692 IPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAE 2871 IP +PM+Y Q ++L HDV IEEV+EYFTNYI+NDSLGIIANAH FADKEP KA+ Sbjct: 825 IPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAK 884 Query: 2872 SNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPTYESHRVIGKLFREV 3051 + CIELA LFSIAVDFPKTG+PA IP HL KE+PDFMEK DK TY+S+ VIGKLFRE+ Sbjct: 885 AEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREI 944 Query: 3052 KDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKT 3231 + I + I SFT EVA+ SYD DME DGF DY+D+AFY+K YD+KLGNLMDYYGIK Sbjct: 945 QGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKN 1004 Query: 3232 ESEILSGSIMKFSRLFDRRKDADAIGAAVRALKKEARTWFDRKNGTELSSQGDDLYAKAS 3411 ESEILSG+IM+ S+ F++R+D DAI AVR+L+KEAR+WF+ + T + S D YAKAS Sbjct: 1005 ESEILSGNIMRMSKSFNKRRDGDAINMAVRSLRKEARSWFN-DDATGVDSGSVDAYAKAS 1063 Query: 3412 AWYHVTYHEKYWGCYNDGLDRDHFLSFPWCVYNKLINIKRDKNSKKRSLNQSLENQFRFG 3591 AWY+VTYH YWG YN+G+ RDHFLSFPWCVY+ L+ IK++K ++ R SLE F Sbjct: 1064 AWYYVTYHHSYWGSYNEGMKRDHFLSFPWCVYHLLVQIKKEK-ARMRMHAVSLEQSFSRR 1122 Query: 3592 LRL 3600 LRL Sbjct: 1123 LRL 1125