BLASTX nr result
ID: Akebia25_contig00002816
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia25_contig00002816
(2480 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus] 59 2e-17
dbj|BAO53351.1| reverse transcriptase [Cauliflower mosaic virus] 59 2e-17
dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus] 59 4e-17
gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus] 59 5e-17
dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus] 59 5e-17
gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus] 59 7e-17
dbj|BAO53568.1| reverse transcriptase [Cauliflower mosaic virus] 59 7e-17
dbj|BAO53260.1| reverse transcriptase [Cauliflower mosaic virus] 59 7e-17
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus] 59 9e-17
dbj|BAO53421.1| reverse transcriptase [Cauliflower mosaic virus] 59 9e-17
dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus] 59 9e-17
dbj|BAO53379.1| reverse transcriptase [Cauliflower mosaic virus]... 59 9e-17
dbj|BAO53372.1| reverse transcriptase [Cauliflower mosaic virus] 59 9e-17
dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus] 59 9e-17
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 59 9e-17
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 59 9e-17
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus... 59 9e-17
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 59 9e-17
dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus] 59 9e-17
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ... 59 9e-17
>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 59.3 bits (142), Expect(3) = 2e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 484
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 485 YASDYIPKLAQ 495
Score = 41.6 bits (96), Expect(3) = 2e-17
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 491 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 550
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + +D + IC Y S FKA
Sbjct: 551 DYWGGMLKAIKINEDTNTELICRYASGSFKA 581
Score = 37.4 bits (85), Expect(3) = 2e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 612 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 669
>dbj|BAO53351.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 59.3 bits (142), Expect(3) = 2e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 483
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 484 YASDYIPKLAQ 494
Score = 41.6 bits (96), Expect(3) = 2e-17
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 490 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 549
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + +D + IC Y S FKA
Sbjct: 550 DYWGGMLKAIKINEDTNTELICRYASGSFKA 580
Score = 37.4 bits (85), Expect(3) = 2e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 611 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 668
>dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 59.3 bits (142), Expect(3) = 4e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 483
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 484 YASDYIPKLAQ 494
Score = 40.4 bits (93), Expect(3) = 4e-17
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 490 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 549
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + K + IC Y S FKA
Sbjct: 550 DYWGGMLKAIKINKGTNTELICRYASGSFKA 580
Score = 37.4 bits (85), Expect(3) = 4e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 611 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 668
>gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]
Length = 675
Score = 59.3 bits (142), Expect(3) = 5e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 484
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 485 YASDYIPKLAQ 495
Score = 40.0 bits (92), Expect(3) = 5e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 491 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQAFPPLHHPLPEEKLIIETDASD 550
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 551 DYWGGMLKAIKINEGTNTELICRYASGSFKA 581
Score = 37.4 bits (85), Expect(3) = 5e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 612 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 669
>dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 59.3 bits (142), Expect(3) = 5e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 483
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 484 YASDYIPKLAQ 494
Score = 40.0 bits (92), Expect(3) = 5e-17
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 490 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 549
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + + + IC Y S FKA
Sbjct: 550 DYWGGMLKAIQINESANTELICRYASGSFKA 580
Score = 37.4 bits (85), Expect(3) = 5e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 611 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 668
>gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 59.3 bits (142), Expect(3) = 7e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 484
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 485 YASDYIPKLAQ 495
Score = 39.7 bits (91), Expect(3) = 7e-17
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 491 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 550
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + + + IC Y S FKA
Sbjct: 551 DYWGGMLKAIKINEGANTELICRYASGSFKA 581
Score = 37.4 bits (85), Expect(3) = 7e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 612 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 669
>dbj|BAO53568.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 59.3 bits (142), Expect(3) = 7e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 483
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 484 YASDYIPKLAQ 494
Score = 39.7 bits (91), Expect(3) = 7e-17
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 490 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 549
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + + + IC Y S FKA
Sbjct: 550 DYWGGMLKAIKINEGSNTELICRYASGSFKA 580
Score = 37.4 bits (85), Expect(3) = 7e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 611 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 668
>dbj|BAO53260.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 59.3 bits (142), Expect(3) = 7e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 483
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 484 YASDYIPKLAQ 494
Score = 39.7 bits (91), Expect(3) = 7e-17
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 490 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 549
Query: 850 ETWVIAL----LKKDGKDKRICGYTSRQFKA 770
+ W L + + + IC Y S FKA
Sbjct: 550 DYWGGMLKAIKINEGANTELICRYASGSFKA 580
Score = 37.4 bits (85), Expect(3) = 7e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 611 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 668
>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
Length = 680
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 430 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 489
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 490 YASDYIPKLAQ 500
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 496 PKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 555
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 556 DYWGGMLKAIKINEGTNTELICRYASGSFKA 586
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 617 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 674
>dbj|BAO53421.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>dbj|BAO53379.1| reverse transcriptase [Cauliflower mosaic virus]
gi|591288602|dbj|BAO53414.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>dbj|BAO53372.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
gi|293185|gb|AAA62375.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
unnamed protein product [Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 489 YASDYIPKLAQ 499
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKA 585
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 616 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 678
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 428 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 487
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 488 YASDYIPKLAQ 498
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 494 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 553
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 554 DYWGGMLKAIKINEGTNTELICRYASGSFKA 584
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 615 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 672
>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722499|gb|AGT42154.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 59.3 bits (142), Expect(3) = 9e-17
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = -3
Query: 1218 HGLSSSKDKFQVAVNQVDFLEDHLVEGKINMQPHVL*KNNNFPHQLEGKLQCQRFLGCVN 1039
HG+ SK K Q+ +++FL + EG Q H+L N FP LE K Q QRFLG +
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 484
Query: 1038 HAREFIPKLSQ 1006
+A ++IPKL+Q
Sbjct: 485 YASDYIPKLAQ 495
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = -2
Query: 1021 PKI--ISKHISRKVMKNTPYN*TQKATIDVQLLKKIWQTLPP-SEPRYEGPFILAIDTTN 851
PK+ I K + K+ +N P+ T++ T+ +Q +KK Q PP P E I+ D ++
Sbjct: 491 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 550
Query: 850 ETW---VIALLKKDGKD-KRICGYTSRQFKA 770
+ W + A+ +G + + IC Y S FKA
Sbjct: 551 DYWGGMLKAIKINEGTNTELICRYASGSFKA 581
Score = 37.4 bits (85), Expect(3) = 9e-17
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 701 FILQIDSSTLATFMKRKIVSNTKLQRYVWWQFLLSQYSFTNEQVARK*HHLPNTLTRE 528
F+++ D++ +F+ ++KL R + WQ LS YSF E + +H + L+RE
Sbjct: 612 FLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 669