BLASTX nr result
ID: Akebia24_contig00042589
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00042589
(567 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [The... 97 2e-33
ref|XP_007019612.1| Uncharacterized protein TCM_035725 [Theobrom... 98 3e-33
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The... 94 3e-32
ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [The... 96 4e-32
ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203... 101 6e-32
ref|XP_007037024.1| Uncharacterized protein TCM_013224 [Theobrom... 94 1e-31
ref|XP_007213052.1| hypothetical protein PRUPE_ppa020415mg, part... 96 5e-31
ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobrom... 94 8e-31
gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot... 99 2e-30
ref|XP_007202926.1| hypothetical protein PRUPE_ppa016266mg, part... 83 5e-30
ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624... 103 2e-28
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 100 3e-28
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 98 6e-28
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 98 6e-28
gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum] 98 6e-28
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 100 8e-28
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 100 1e-27
emb|CAN68662.1| hypothetical protein VITISV_004407 [Vitis vinifera] 86 1e-27
emb|CAN72135.1| hypothetical protein VITISV_017100 [Vitis vinifera] 95 1e-27
gb|AAS49090.1| At2g06190 [Arabidopsis thaliana] 99 1e-27
>ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508700944|gb|EOX92840.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 647
Score = 97.4 bits (241), Expect(2) = 2e-33
Identities = 47/69 (68%), Positives = 52/69 (75%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C KTSDAT+IA LFF EVVRLHGIP +I DR KF+ HFW TLWR T L ++S
Sbjct: 390 FIPCFKTSDATHIAELFFCEVVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSST 449
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 450 CHPQTDGQT 458
Score = 71.2 bits (173), Expect(2) = 2e-33
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI* 181
+VN +LGN+L+ L PK W L + Q EFAYNN V+ S +K P E+ Y P H +
Sbjct: 460 VVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLV 519
Query: 180 FHYQSYLV-----*ALLQITWLKR*LQSCL-MQKSSWRNTINKHRRVKVFKENDMVMVHI 19
Q V I + +++ L + + T N+HRR + F+E D V+VH+
Sbjct: 520 PLPQEARVSNEGELFAYHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHL 579
Query: 18 HKERFP 1
+ERFP
Sbjct: 580 RQERFP 585
>ref|XP_007019612.1| Uncharacterized protein TCM_035725 [Theobroma cacao]
gi|508724940|gb|EOY16837.1| Uncharacterized protein
TCM_035725 [Theobroma cacao]
Length = 499
Score = 97.8 bits (242), Expect(2) = 3e-33
Identities = 45/69 (65%), Positives = 53/69 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C +TSDAT+IA LFF+E+VRLHGIP +I DR KF+ HFW TLWR T L ++S
Sbjct: 169 FIPCFRTSDATHIAELFFREIVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSST 228
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 229 CHPQTDGQT 237
Score = 70.1 bits (170), Expect(2) = 3e-33
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI* 181
+VN +LGN+L+ L PK W L + Q EFAYNN V+ S +K P E+ Y P H +
Sbjct: 239 VVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLV 298
Query: 180 FHYQSYLV-----*ALLQITWLKR*LQSCL-MQKSSWRNTINKHRRVKVFKENDMVMVHI 19
Q V I + +++ L + + T N+HRR + F+E D V+VH+
Sbjct: 299 PLPQEARVSNEGELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHL 358
Query: 18 HKERFP 1
+ERFP
Sbjct: 359 RQERFP 364
>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1452
Score = 94.4 bits (233), Expect(2) = 3e-32
Identities = 43/69 (62%), Positives = 53/69 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C +TSDAT+IA LFF+E+V LHGIP +I DR+ KF+ +FW TLWR T L ++S
Sbjct: 1122 FIPCFRTSDATHIAELFFREIVILHGIPTSIVSDRHVKFMGYFWRTLWRKFGTELKYSST 1181
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 1182 CHPQTDGQT 1190
Score = 70.5 bits (171), Expect(2) = 3e-32
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI* 181
+VN +LGN+L+ L PK W L + Q EFAYNN V+ S +K P E Y P H +
Sbjct: 1192 VVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLV 1251
Query: 180 FHYQSYLV-----*ALLQITWLKR*LQSCL-MQKSSWRNTINKHRRVKVFKENDMVMVHI 19
Q V QI + +++ L + + T N+HRR + F+E D V+VH+
Sbjct: 1252 PLPQEARVSNEGELFADQIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHL 1311
Query: 18 HKERFP 1
+ERFP
Sbjct: 1312 RQERFP 1317
>ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508709261|gb|EOY01158.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 786
Score = 95.9 bits (237), Expect(2) = 4e-32
Identities = 44/69 (63%), Positives = 53/69 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C +TS+AT+IA LFF+E+VRLHGIP +I DR KF+ HFW TLWR T L ++S
Sbjct: 574 FIPCFRTSNATHIAELFFREIVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSST 633
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 634 CHPQTDGQT 642
Score = 68.6 bits (166), Expect(2) = 4e-32
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI* 181
+VN +LGN+L+ L PK W L + Q EFAYNN V+ S +K P E Y P H +
Sbjct: 644 VVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLV 703
Query: 180 FHYQSYLV-----*ALLQITWLKR*LQSCL-MQKSSWRNTINKHRRVKVFKENDMVMVHI 19
Q V I + +++ L + + T N+HRR + F+E D V+VH+
Sbjct: 704 PLPQEARVSNEGELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHL 763
Query: 18 HKERFP 1
+ERFP
Sbjct: 764 RQERFP 769
>ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203557 [Cucumis sativus]
Length = 1406
Score = 101 bits (252), Expect(2) = 6e-32
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT DA NIANLFF+E+VRLHGIPKTI DR KFL HFW +LW+ +T+L F++
Sbjct: 1222 FIPCKKTFDALNIANLFFREIVRLHGIPKTIVSDRDVKFLSHFWRSLWKKFDTNLLFSTA 1281
Query: 385 CHPQTDGQTGKPN 347
HPQTDGQT N
Sbjct: 1282 SHPQTDGQTEVTN 1294
Score = 62.0 bits (149), Expect(2) = 6e-32
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHT 193
+ N TLGN+++ LS +KPKQW LAL Q EF +N++ + ST K P E+VY LP T
Sbjct: 1292 VTNRTLGNLIRCLSGDKPKQWDLALPQAEFTFNHMENRSTGKSPFEVVYTSLPRVT 1347
>ref|XP_007037024.1| Uncharacterized protein TCM_013224 [Theobroma cacao]
gi|508774269|gb|EOY21525.1| Uncharacterized protein
TCM_013224 [Theobroma cacao]
Length = 412
Score = 94.0 bits (232), Expect(2) = 1e-31
Identities = 44/69 (63%), Positives = 52/69 (75%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C +T DAT+IA LFF+EVVRLHGIP +I +R KF+ HFW TLWR T L ++S
Sbjct: 82 FIPCFRTFDATHIAELFFREVVRLHGIPTSIVSNRDVKFMGHFWKTLWRKFGTELKYSST 141
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 142 CHPQTDGQT 150
Score = 68.6 bits (166), Expect(2) = 1e-31
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Frame = -1
Query: 363 RLVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI 184
++VN +LGN+L+ L PK W L + Q EFAYNN V+ S +K P E Y P H +
Sbjct: 151 KVVNRSLGNMLRYLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDL 210
Query: 183 *FHYQSYLV*ALLQ-----ITWLKR*LQSCL-MQKSSWRNTINKHRRVKVFKENDMVMVH 22
Q V + I + +++ L + + T N+HRR + F E D V+VH
Sbjct: 211 VPLPQEARVSNKGELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFDEGDQVLVH 270
Query: 21 IHKERFP 1
+ +ERFP
Sbjct: 271 LRQERFP 277
>ref|XP_007213052.1| hypothetical protein PRUPE_ppa020415mg, partial [Prunus persica]
gi|462408917|gb|EMJ14251.1| hypothetical protein
PRUPE_ppa020415mg, partial [Prunus persica]
Length = 840
Score = 96.3 bits (238), Expect(2) = 5e-31
Identities = 45/70 (64%), Positives = 52/70 (74%)
Frame = -3
Query: 556 CKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSMCHP 377
CKKT+D +NIA LFF+EVVRLHG+P +IT DR KFL HFW TLWR T+L +S HP
Sbjct: 678 CKKTADISNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITLWRMFGTTLNRSSTAHP 737
Query: 376 QTDGQTGKPN 347
QTDGQT N
Sbjct: 738 QTDGQTEVTN 747
Score = 64.3 bits (155), Expect(2) = 5e-31
Identities = 43/120 (35%), Positives = 54/120 (45%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI* 181
+ N TLGN+++S+ EKPKQW AL QVEFAYN+ V + T +H
Sbjct: 745 VTNRTLGNMVRSICGEKPKQWDYALPQVEFAYNSAVHSA--------------TGSHHFP 790
Query: 180 FHYQSYLV*ALLQITWLKR*LQSCLMQKSSWRNTINKHRRVKVFKENDMVMVHIHKERFP 1
F NKHRRVKVF+E D VMV + +ERFP
Sbjct: 791 FR--------------------------------CNKHRRVKVFQEGDYVMVFLREERFP 818
>ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobroma cacao]
gi|508727408|gb|EOY19305.1| Uncharacterized protein
TCM_044370 [Theobroma cacao]
Length = 1306
Score = 94.0 bits (232), Expect(2) = 8e-31
Identities = 45/69 (65%), Positives = 51/69 (73%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C +TSDAT+IA LFF EVVRLHGIP +I DR KF+ HFW TLWR T L ++S
Sbjct: 1018 FIPCFRTSDATHIAELFFCEVVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSST 1077
Query: 385 CHPQTDGQT 359
CHPQTD QT
Sbjct: 1078 CHPQTDSQT 1086
Score = 65.9 bits (159), Expect(2) = 8e-31
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTHTHWI* 181
+VN +LGNIL+ L PK W L Q EFAYNN V+ S +K P E Y P H +
Sbjct: 1088 VVNRSLGNILRCLIQNNPKTWDLVKPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLV 1147
Query: 180 FHYQSYLV-----*ALLQITWLKR*LQSCL-MQKSSWRNTINKHRRVKVFKENDMVMVHI 19
Q V I + +++ L + + T N+HRR + F+E D V+V++
Sbjct: 1148 PLPQEARVSNEGELFADHIQKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVYL 1207
Query: 18 HKERFP 1
+ERFP
Sbjct: 1208 RQERFP 1213
>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 280
Score = 99.0 bits (245), Expect(2) = 2e-30
Identities = 48/73 (65%), Positives = 54/73 (73%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT+DA+NIA LFFKEVVRLHG+PK+IT DR KFL HFW TLWR T+L +S
Sbjct: 30 FIACKKTADASNIAKLFFKEVVRLHGVPKSITSDRDTKFLSHFWSTLWRMFGTALNRSST 89
Query: 385 CHPQTDGQTGKPN 347
H Q DGQT N
Sbjct: 90 PHTQIDGQTEVTN 102
Score = 59.7 bits (143), Expect(2) = 2e-30
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVS-LSTRKLPSEIVYCRLPTHTHWI 184
+ N TLGN+++S+ + PKQW LAL Q+EFAYN+VV + KLP + T
Sbjct: 100 VTNRTLGNMVRSICGDNPKQWDLALPQIEFAYNSVVHVVDLVKLPKAL---GASAETMAE 156
Query: 183 *FHYQSYLV*ALLQITWLKR*LQSCLMQKSSWRNTINKHRRVKVFKENDMVMVHIHKERF 4
+V A L+ T K + +K RR KVFKE D VMV + K RF
Sbjct: 157 EILVVKEVVKAKLEATGKKN------------KVAADKRRRFKVFKEGDDVMVLLRKGRF 204
>ref|XP_007202926.1| hypothetical protein PRUPE_ppa016266mg, partial [Prunus persica]
gi|462398457|gb|EMJ04125.1| hypothetical protein
PRUPE_ppa016266mg, partial [Prunus persica]
Length = 572
Score = 82.8 bits (203), Expect(2) = 5e-30
Identities = 42/68 (61%), Positives = 48/68 (70%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT +A+N+A LFFKEVV L G+PK+IT DR KFL HF TLWR T L NS+
Sbjct: 323 FIACKKTVNASNVAKLFFKEVVWLPGVPKSITSDRDTKFLSHFQITLWRMFVTDLNRNSI 382
Query: 385 CHPQTDGQ 362
H Q DGQ
Sbjct: 383 AHLQMDGQ 390
Score = 74.3 bits (181), Expect(2) = 5e-30
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Frame = -1
Query: 384 VIHRQM---VRLVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVY 214
+ H QM +++ N TL ++++S+ ++PKQW +AL QVEFAYN+VV S K P VY
Sbjct: 382 IAHLQMDGQIKVTNRTLRDMVRSICRDRPKQWDIALPQVEFAYNSVVHSSIGKSPFATVY 441
Query: 213 CRLPTHTHWI*FHYQSYLV*ALLQITWLKR*LQSCLMQKSSWRNTINKHRRVKVFKENDM 34
+P H + + ++ + +KHR V++F+E D
Sbjct: 442 TWVPRHV------------------------VDLVKLPRAHKTSPADKHRLVRLFQEEDS 477
Query: 33 VMVHIHKERFP 1
VMV++ +ERFP
Sbjct: 478 VMVYLRRERFP 488
>ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624555 [Citrus sinensis]
Length = 821
Score = 103 bits (256), Expect(2) = 2e-28
Identities = 47/69 (68%), Positives = 54/69 (78%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C KT DAT+IANLFFKE+VRLHG+P++I DR KFL HFW TLW L T L F++
Sbjct: 224 FIPCHKTDDATSIANLFFKEIVRLHGVPRSIVSDRDAKFLSHFWKTLWGKLGTKLLFSTT 283
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 284 CHPQTDGQT 292
Score = 48.9 bits (115), Expect(2) = 2e-28
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLP-THTHWI 184
+VN TL +L+++ + K W L VEFAYN V +T+ P EIVY P T +
Sbjct: 294 VVNRTLSTLLRAIIQKNLKTWEECLPHVEFAYNRTVHSATKFSPFEIVYGFNPLTPLDLL 353
Query: 183 *FHY-QSYLV*ALLQITWLK----R*LQSCLMQKSSWRNTINKHRRVKVFKENDMVMVHI 19
+ + + ++K R Q + + NK R+ VF+ D V VH+
Sbjct: 354 PLPIDERASMDGKKKAEFVKQLHERTRQHIEKRTEQYATQANKGRKQVVFQPGDWVWVHM 413
Query: 18 HKERFP 1
KERFP
Sbjct: 414 RKERFP 419
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 100 bits (248), Expect(2) = 3e-28
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT DAT++A L+FKEVV+LHGIPK+I DR +KF+ HFW TLW+ L T L F++
Sbjct: 1184 FIACKKTEDATSVAELYFKEVVKLHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTS 1243
Query: 385 CHPQTDGQTGKPN 347
HPQTDGQT N
Sbjct: 1244 HHPQTDGQTEVTN 1256
Score = 51.2 bits (121), Expect(2) = 3e-28
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVY---CRLPTHTH 190
+ N TLG IL+ + K W L LAQ EFA+N S +T K P E+VY +PT
Sbjct: 1254 VTNKTLGRILRCTVARSLKDWDLKLAQAEFAFNRAPSTTTGKSPFEVVYGVNPMMPTDLA 1313
Query: 189 WI*FHYQSY----LV*ALLQI-TWLKR*LQSCLMQKSSWRNTINKHRRVKVFKENDMVMV 25
I + Y V +L I +K+ ++ + + + K F+ D+V +
Sbjct: 1314 PIKRNTIDYDAKKRVEQMLHIHEQVKKQIEKA---NEAHKGKSKGVKGTKSFEPGDLVWI 1370
Query: 24 HIHKERFP 1
H+ KERFP
Sbjct: 1371 HLRKERFP 1378
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 98.2 bits (243), Expect(2) = 6e-28
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT+DA+++A+LF KEVV+LHGIP+TI DR KFL HFW LW L T L F++
Sbjct: 1251 FIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTS 1310
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 1311 CHPQTDGQT 1319
Score = 52.0 bits (123), Expect(2) = 6e-28
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLP-THTHWI 184
+VN TLGN+L+++ K W L VEFAYN ST K P E+VY P T +
Sbjct: 1321 VVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLL 1380
Query: 183 *FHYQSYL-V*ALLQITWLKR*LQSCLMQKSSWRNTI----NKHRRVKVFKENDMVMVHI 19
+ + + +K+ + + + NK R+ +FK D+V VH+
Sbjct: 1381 PLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHM 1440
Query: 18 HKERFP 1
KERFP
Sbjct: 1441 RKERFP 1446
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 98.2 bits (243), Expect(2) = 6e-28
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT+DA+++A+LF KEVV+LHGIP+TI DR KFL HFW LW L T L F++
Sbjct: 1251 FIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTS 1310
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 1311 CHPQTDGQT 1319
Score = 52.0 bits (123), Expect(2) = 6e-28
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLP-THTHWI 184
+VN TLGN+L+++ K W L VEFAYN ST K P E+VY P T +
Sbjct: 1321 VVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLL 1380
Query: 183 *FHYQSYL-V*ALLQITWLKR*LQSCLMQKSSWRNTI----NKHRRVKVFKENDMVMVHI 19
+ + + +K+ + + + NK R+ +FK D+V VH+
Sbjct: 1381 PLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHM 1440
Query: 18 HKERFP 1
KERFP
Sbjct: 1441 RKERFP 1446
>gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]
Length = 1096
Score = 98.2 bits (243), Expect(2) = 6e-28
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT+DA+++A+LF KEVV+LHGIP+TI DR KFL HFW LW L T L F++
Sbjct: 759 FIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTS 818
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 819 CHPQTDGQT 827
Score = 52.0 bits (123), Expect(2) = 6e-28
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLP-THTHWI 184
+VN TLGN+L+++ K W L VEFAYN ST K P E+VY P T +
Sbjct: 829 VVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLL 888
Query: 183 *FHYQSYL-V*ALLQITWLKR*LQSCLMQKSSWRNTI----NKHRRVKVFKENDMVMVHI 19
+ + + +K+ + + + NK R+ +FK D+V VH+
Sbjct: 889 PLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHM 948
Query: 18 HKERFP 1
KERFP
Sbjct: 949 RKERFP 954
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 100 bits (249), Expect(2) = 8e-28
Identities = 45/69 (65%), Positives = 53/69 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C KT DA++IA+LFF+E+VRLHG+P TI DR KFL HFW TLW L T L F++
Sbjct: 1298 FIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTT 1357
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 1358 CHPQTDGQT 1366
Score = 49.3 bits (116), Expect(2) = 8e-28
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLP------- 202
+VN TL +L+++ + K W L +EFAYN + +T+ P +IVY LP
Sbjct: 1368 VVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLM 1427
Query: 201 --THTHWI*FHYQSYLV*ALLQITWLKR*LQSCLMQKSSWRNTINKHRRVKVFKENDMVM 28
+ + F + A L + + ++ + ++ +K RR F+ D+V
Sbjct: 1428 PLPSSEKLNFDAKQR---AELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVW 1484
Query: 27 VHIHKERFP 1
+H+ KERFP
Sbjct: 1485 LHLRKERFP 1493
Score = 69.7 bits (169), Expect(2) = 2e-13
Identities = 34/73 (46%), Positives = 43/73 (58%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI K T +A L+F +V LHG+PK I DR ++F HFW L L T L F++
Sbjct: 2120 FIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTA 2179
Query: 385 CHPQTDGQTGKPN 347
HPQTDGQT + N
Sbjct: 2180 YHPQTDGQTERLN 2192
Score = 31.6 bits (70), Expect(2) = 2e-13
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 357 VNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVY---CRLP 202
+N L ++L + + K W +L EF+YNN S + P E +Y CR P
Sbjct: 2191 LNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTP 2245
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 100 bits (248), Expect(2) = 1e-27
Identities = 44/69 (63%), Positives = 53/69 (76%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI C K+ DAT++A+LFF+E+VRLHG+P TI DR KFL HFW TLW L T L F++
Sbjct: 1326 FIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTT 1385
Query: 385 CHPQTDGQT 359
CHPQTDGQT
Sbjct: 1386 CHPQTDGQT 1394
Score = 48.9 bits (115), Expect(2) = 1e-27
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLP------- 202
+VN TL +L+++ + K W L VEFAYN +T+K P EIVY LP
Sbjct: 1396 VVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLL 1455
Query: 201 --THTHWI*F--HYQSYLV*ALLQITWLKR*LQSCLMQKSSWRNTINKHRRVKVFKENDM 34
+ + F Y++ L+ L + T ++ ++ +K ++ F+ D+
Sbjct: 1456 PLPTSERVNFDAKYRAELMLKLHETT-----KENIERMNIKYKLAGSKGKKHVAFEPGDL 1510
Query: 33 VMVHIHKERFP 1
V +H+ K+RFP
Sbjct: 1511 VWLHLRKDRFP 1521
>emb|CAN68662.1| hypothetical protein VITISV_004407 [Vitis vinifera]
Length = 605
Score = 85.5 bits (210), Expect(2) = 1e-27
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = -3
Query: 541 DATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSMCHPQTDGQ 362
DA+ +ANLFF+E+VRLHGIP +IT DR KFL HFW TLW+ +TSL ++S HPQ DGQ
Sbjct: 438 DASYVANLFFREIVRLHGIPHSITSDRDVKFLSHFWRTLWKLFDTSLKYSSTSHPQIDGQ 497
Query: 361 TGKPN 347
T N
Sbjct: 498 TEVAN 502
Score = 63.5 bits (153), Expect(2) = 1e-27
Identities = 26/55 (47%), Positives = 41/55 (74%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVYCRLPTH 196
+ N TL N+++S++ +KPKQW AL Q+EFA+N++ + ST+K P E+VY +P H
Sbjct: 500 VANRTLSNVIRSVNGDKPKQWGAALPQIEFAFNSMPNHSTKKTPFEVVYASVPRH 554
>emb|CAN72135.1| hypothetical protein VITISV_017100 [Vitis vinifera]
Length = 587
Score = 94.7 bits (234), Expect(2) = 1e-27
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT DA+NIANL+F+EVVRLHG+PK+IT D+ +KFL FW TLW+ T L +++
Sbjct: 460 FICCKKTMDASNIANLYFREVVRLHGVPKSITSDQDSKFLSPFWRTLWKKFGTKLQYSTS 519
Query: 385 CHPQTDGQT 359
HPQ DGQT
Sbjct: 520 YHPQMDGQT 528
Score = 54.3 bits (129), Expect(2) = 1e-27
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Frame = -1
Query: 378 HRQM---VRLVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVSLSTRKLPSEIVY 214
H QM +VN +LG++L+ L E PKQW +AQ EFAYN +L+T K P E+VY
Sbjct: 521 HPQMDGQTEVVNRSLGDLLRCLVGENPKQWEAVVAQAEFAYNYSKNLTTGKSPFEVVY 578
>gb|AAS49090.1| At2g06190 [Arabidopsis thaliana]
Length = 148
Score = 99.0 bits (245), Expect(2) = 1e-27
Identities = 48/73 (65%), Positives = 54/73 (73%)
Frame = -3
Query: 565 FITCKKTSDATNIANLFFKEVVRLHGIPKTITFDRYNKFLCHFWCTLWR*LNTSL*FNSM 386
FI CKKT+DA+NIA LFFKEVVRLHG+PK+IT DR KFL HFW TLWR T+L +S
Sbjct: 30 FIACKKTADASNIAKLFFKEVVRLHGVPKSITSDRDTKFLSHFWSTLWRMFGTALNRSST 89
Query: 385 CHPQTDGQTGKPN 347
H Q DGQT N
Sbjct: 90 PHTQIDGQTEVTN 102
Score = 50.1 bits (118), Expect(2) = 1e-27
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = -1
Query: 360 LVNLTLGNILQSLSSEKPKQWVLALAQVEFAYNNVVS-LSTRKLPSEI 220
+ N TLGN+++S+ + PKQW LAL Q+EFAYN+VV + KLP +
Sbjct: 100 VTNRTLGNMVRSICGDNPKQWDLALPQIEFAYNSVVHVVDLVKLPKAL 147