BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00040999
         (266 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82543.1| putative RNA dependent RNA polymerase [carrot red...    94   3e-17
gb|ABV01917.1| putative RNA-dependent RNA polymerase [Tobacco bu...    92   6e-17
ref|NP_624318.1| putative RNA dependent RNA polymerase [Carrot r...    89   5e-16
ref|NP_054006.2| RNA-dependent RNA polymerase [Carrot mottle mim...    76   4e-12
gb|AAB81639.1| RNA-dependent RNA polymerase [Carrot mottle mimic...    76   4e-12
gb|ACJ03575.1| RNA-dependent RNA polymerase [Carrot mottle mimic...    76   4e-12
gb|ACJ03572.1| RNA-dependent RNA polymerase [Carrot mottle mimic...    76   4e-12
gb|AGG23390.1| RNA-dependent RNA polymerase [Citrus yellow vein-...    75   1e-11
ref|NP_660172.1| hypothetical protein [Beet western yellows ST9 ...    75   1e-11
gb|AAG02571.1| RNA-dependent RNA polymerase [tobacco mottle virus]     72   6e-11
ref|YP_002302259.1| RNA-dependent RNA polymerase [Carrot mottle ...    71   1e-10
gb|AAQ00940.1| putative RNA-dependent RNA polymerase [Carrot mot...    70   3e-10
gb|AAQ00938.1| putative RNA-dependent RNA polymerase [Carrot mot...    69   9e-10
gb|AAQ00937.1| putative RNA-dependent RNA polymerase [Carrot mot...    69   9e-10
gb|ADE10194.1| RNA-dependent RNA polymerase [Tobacco necrosis vi...    68   1e-09
gb|AAQ00939.1| putative RNA-dependent RNA polymerase [Carrot mot...    68   1e-09
ref|NP_619714.1| RNA-dependent RNA polymerase [Groundnut rosette...    68   2e-09
sp|Q67683.2|RDRP_GRVMC RecName: Full=RNA-directed RNA polymerase...    68   2e-09
gb|AAQ00936.1| putative RNA-dependent RNA polymerase [Carrot mot...    68   2e-09
ref|NP_056825.2| RNA-dependent RNA polymerase [Tobacco necrosis ...    67   2e-09

>gb|AAB82543.1| putative RNA dependent RNA polymerase [carrot red leaf luteovirus
           associated RNA]
          Length = 757

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 45/88 (51%), Positives = 54/88 (61%)
 Frame = -1

Query: 266 RGSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRER 87
           R   LLE W  + +P  + LDASRFDLHVSV ALKFTD+IY  +        L+  +R R
Sbjct: 440 RARALLEKWQSFDSPVAVCLDASRFDLHVSVDALKFTDQIYLSAFTGIDRSELKEILRNR 499

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
           H T G A C +G   Y+K GGRCSGD D
Sbjct: 500 HKTTGFATCKEGTFHYEKVGGRCSGDSD 527


>gb|ABV01917.1| putative RNA-dependent RNA polymerase [Tobacco bushy top
           disease-associated RNA]
          Length = 788

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 44/88 (50%), Positives = 60/88 (68%)
 Frame = -1

Query: 266 RGSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRER 87
           RG MLL+ W  + NP  + LDASRFDLHVSV AL++T  +Y  +       LL + +  R
Sbjct: 472 RGEMLLKKWESFVNPVAICLDASRFDLHVSVEALQYTHILYYTAF--GRDPLLMQLLENR 529

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
            +T G+A+C +G++RYKK+GGRCSGD D
Sbjct: 530 LETRGVAICKEGSYRYKKKGGRCSGDND 557


>ref|NP_624318.1| putative RNA dependent RNA polymerase [Carrot red leaf luteovirus
           associated RNA] gi|2582376|gb|AAB82546.1| putative RNA
           dependent RNA polymerase [carrot red leaf luteovirus
           associated RNA]
          Length = 757

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 44/88 (50%), Positives = 53/88 (60%)
 Frame = -1

Query: 266 RGSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRER 87
           R   LLE W  + +P  + LDASRFDLHVSV ALKFTD+IY  +        L+  +R R
Sbjct: 440 RARALLEKWQSFDSPVAVCLDASRFDLHVSVDALKFTDQIYLSAFTGIDRSELKEILRNR 499

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
           H T G A   +G   Y+K GGRCSGD D
Sbjct: 500 HKTTGFATFKEGTFHYEKVGGRCSGDSD 527


>ref|NP_054006.2| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 882

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G ++ + W+ + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      + + +
Sbjct: 546 GEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVDLLNQMY 602

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
              GL  C DG  +YK +G R SGD+D
Sbjct: 603 VNRGLGTCKDGLVKYKVKGCRMSGDMD 629


>gb|AAB81639.1| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 569

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G ++ + W+ + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      + + +
Sbjct: 233 GEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVDLLNQMY 289

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
              GL  C DG  +YK +G R SGD+D
Sbjct: 290 VNRGLGTCKDGLVKYKVKGCRMSGDMD 316


>gb|ACJ03575.1| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 880

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G ++ + W+ + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      + + +
Sbjct: 546 GEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVELLDQMY 602

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
              GL  C DG  +YK +G R SGD+D
Sbjct: 603 VNRGLGTCKDGLVKYKVKGCRMSGDMD 629


>gb|ACJ03572.1| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 882

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G ++ + W+ + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      + + +
Sbjct: 546 GEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVDLLNQMY 602

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
              GL  C DG  +YK +G R SGD+D
Sbjct: 603 VNRGLGTCKDGLVKYKVKGCRMSGDMD 629


>gb|AGG23390.1| RNA-dependent RNA polymerase [Citrus yellow vein-associated virus]
          Length = 717

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 38/87 (43%), Positives = 54/87 (62%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G+ L   W  +S+P C+ LDASRFDLHVSVG LKFT ++Y        S  L+R+++   
Sbjct: 398 GATLRRKWEKFSSPVCVSLDASRFDLHVSVGMLKFTHKLYDYYC---KSPTLQRYLKWTL 454

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
             HG+A C + ++ Y+  G R SGD+D
Sbjct: 455 RNHGVASCKELSYEYEVVGRRMSGDMD 481


>ref|NP_660172.1| hypothetical protein [Beet western yellows ST9 associated virus]
           gi|289512|gb|AAA42863.1| 5' end of ORF 3 is
           undetermined; putative [Beet western yellows ST9
           associated virus]
          Length = 342

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
 Frame = -1

Query: 266 RGSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSL--LPESSVLLERFMR 93
           RG+ + E W  +++P  + LDASRFDLHVS  AL+ T  +Y  ++   P+ + +LE    
Sbjct: 26  RGNYMKEKWESFNDPVAICLDASRFDLHVSEDALQHTHLLYTTAIGNDPQLAYILE---- 81

Query: 92  ERHDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
            R  T G+   SDGA RY K+GGRCSGD D
Sbjct: 82  NRLVTDGVGWSSDGAFRYHKKGGRCSGDND 111


>gb|AAG02571.1| RNA-dependent RNA polymerase [tobacco mottle virus]
          Length = 361

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRER 87
           G ++ + W ++ +P C+ LDA RFD H+S+ ALKFT  IYR+ +   E S LL++ +   
Sbjct: 17  GEIIAKKWQMFKHPVCVGLDAKRFDQHISMPALKFTHGIYRKFIKNAEFSNLLDKML--- 73

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
              HG+    DG  +YK RG R SGD+D
Sbjct: 74  -INHGVGTAKDGRVKYKVRGCRMSGDMD 100


>ref|YP_002302259.1| RNA-dependent RNA polymerase [Carrot mottle virus]
           gi|209972132|gb|ACJ03580.1| RNA-dependent RNA polymerase
           [Carrot mottle virus]
          Length = 870

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRER 87
           G ++ + W  + +P C+ LDASRFD HVSV ALKFT ++Y+R +  PE     +R ++  
Sbjct: 527 GDIIAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPE----FDRLLQLM 582

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
           +   G     DG  +YK +G R SGD+D
Sbjct: 583 YTNKGRGTAKDGVVKYKVKGCRMSGDMD 610


>gb|AAQ00940.1| putative RNA-dependent RNA polymerase [Carrot mottle virus]
          Length = 104

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -1

Query: 242 WNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRERHDTHGLA 66
           W ++ NP C+ LDASRFD HVSV ALKFT +IY+R +  PE     +R ++  +   G  
Sbjct: 5   WKMFRNPVCVGLDASRFDQHVSVAALKFTHKIYKRFVRDPE----FDRLLQLMYVNKGRG 60

Query: 65  VCSDGAHRYKKRGGRCSGDVD 3
              DG  +YK  G R SGD+D
Sbjct: 61  TAKDGVVKYKVTGCRMSGDMD 81


>gb|AAQ00938.1| putative RNA-dependent RNA polymerase [Carrot mottle virus]
          Length = 104

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -1

Query: 242 WNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRERHDTHGLA 66
           WN++  P C+ LDASRFD HVSV ALKFT  +Y+R +  PE     +R ++  +   G  
Sbjct: 5   WNMFVLPVCVGLDASRFDQHVSVNALKFTHAVYKRFVRDPE----FDRLLQMMYVNKGRG 60

Query: 65  VCSDGAHRYKKRGGRCSGDVD 3
              DG  +YK +G R SGD+D
Sbjct: 61  TAKDGMVKYKVKGCRMSGDMD 81


>gb|AAQ00937.1| putative RNA-dependent RNA polymerase [Carrot mottle virus]
           gi|33242482|gb|AAQ00941.1| putative RNA-dependent RNA
           polymerase [Carrot mottle virus]
          Length = 104

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = -1

Query: 254 LLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRERHDT 78
           + + W  + +P C+ LDASRFD HVSV ALKFT ++Y+R +  PE     +R ++  +  
Sbjct: 1   IAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPE----FDRLLQLMYTN 56

Query: 77  HGLAVCSDGAHRYKKRGGRCSGDVD 3
            G     DG  +YK +G R SGD+D
Sbjct: 57  KGRGTAKDGVVKYKVKGCRMSGDMD 81


>gb|ADE10194.1| RNA-dependent RNA polymerase [Tobacco necrosis virus A]
          Length = 724

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/88 (42%), Positives = 51/88 (57%)
 Frame = -1

Query: 266 RGSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRER 87
           +G ++   WN Y NP  + LDASRFD HVSV ALK+  E Y R    +    L+  ++++
Sbjct: 410 QGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALKYEHEFYLRDYPNDKQ--LKWLLKQQ 467

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
               G A  SDG  +YKK G R SGD++
Sbjct: 468 LCNVGTAFASDGIIKYKKEGCRMSGDMN 495


>gb|AAQ00939.1| putative RNA-dependent RNA polymerase [Carrot mottle virus]
          Length = 104

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -1

Query: 242 WNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRERHDTHGLA 66
           W ++ +P C+ LDASRFD HVSV ALKFT +IY+R +  PE     +R ++  +   G  
Sbjct: 5   WKMFRDPVCVGLDASRFDQHVSVAALKFTHKIYKRFVRDPE----FDRLLQLMYVNKGRG 60

Query: 65  VCSDGAHRYKKRGGRCSGDVD 3
              DG  +YK  G R SGD+D
Sbjct: 61  TAKDGVVKYKVTGCRMSGDMD 81


>ref|NP_619714.1| RNA-dependent RNA polymerase [Groundnut rosette virus]
          Length = 839

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/87 (39%), Positives = 50/87 (57%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G ++ + W +++NP C+ LDASRFD HVSV AL+FT  +YRR +    S   ++ +R  +
Sbjct: 491 GEIVAKKWKMFANPVCVGLDASRFDQHVSVDALRFTHGVYRRFV---KSSEFDKLLRWMY 547

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
                    DG  +Y   G R SGD+D
Sbjct: 548 TNRCRGAAKDGFVKYTVNGCRMSGDMD 574


>sp|Q67683.2|RDRP_GRVMC RecName: Full=RNA-directed RNA polymerase; Short=RdRp
          Length = 839

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/87 (39%), Positives = 50/87 (57%)
 Frame = -1

Query: 263 GSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRERH 84
           G ++ + W +++NP C+ LDASRFD HVSV AL+FT  +YRR +    S   ++ +R  +
Sbjct: 491 GEIVAKKWKMFANPVCVGLDASRFDQHVSVDALRFTHGVYRRFV---KSSEFDKLLRWMY 547

Query: 83  DTHGLAVCSDGAHRYKKRGGRCSGDVD 3
                    DG  +Y   G R SGD+D
Sbjct: 548 TNRCRGAAKDGFVKYTVNGCRMSGDMD 574


>gb|AAQ00936.1| putative RNA-dependent RNA polymerase [Carrot mottle virus]
          Length = 104

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -1

Query: 242 WNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLERFMRERHDTHGLA 66
           W ++S P C+ LDASRFD HVSV ALKFT  IY+R +  PE     +R ++  +   G  
Sbjct: 5   WKMFSRPVCVGLDASRFDQHVSVPALKFTHSIYKRFVRDPE----FDRLLQLMYVNKGRG 60

Query: 65  VCSDGAHRYKKRGGRCSGDVD 3
              DG  +Y+ +G R SGD+D
Sbjct: 61  TAKDGMVKYEVKGCRMSGDMD 81


>ref|NP_056825.2| RNA-dependent RNA polymerase [Tobacco necrosis virus A]
           gi|308153486|sp|P22958.2|RDRP_TNVA RecName:
           Full=RNA-directed RNA polymerase; AltName: Full=Protein
           p82; Contains: RecName: Full=Protein p23
           gi|19549335|gb|AAA86434.2| RNA-dependent RNA polymerase
           [Tobacco necrosis virus A]
          Length = 724

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 36/88 (40%), Positives = 52/88 (59%)
 Frame = -1

Query: 266 RGSMLLETWNLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRER 87
           +G ++   WN Y NP  + LDASRFD HVSV AL++  E Y R    +    L+  ++++
Sbjct: 410 QGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALEYEHEFYLRDYPNDKQ--LKWLLKQQ 467

Query: 86  HDTHGLAVCSDGAHRYKKRGGRCSGDVD 3
               G A  SDG  +YKK+G R SGD++
Sbjct: 468 LCNVGTAFASDGIIKYKKKGCRMSGDMN 495