BLASTX nr result

ID: Akebia24_contig00030000 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00030000
         (233 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007214376.1| hypothetical protein PRUPE_ppb016078mg [Prun...    56   6e-06
gb|ADN33758.1| retrotransposon protein putative ty3-gypsy sub-cl...    56   6e-06

>ref|XP_007214376.1| hypothetical protein PRUPE_ppb016078mg [Prunus persica]
           gi|462410241|gb|EMJ15575.1| hypothetical protein
           PRUPE_ppb016078mg [Prunus persica]
          Length = 452

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 35/73 (47%), Positives = 48/73 (65%)
 Frame = -1

Query: 233 LLYILKGIKPHIF*ELATRAHDMEQSIAVHQTPRPSEPRRQEKKDGKSFKTKEVLSTTTS 54
           LLYILKGIKP +F ELATRAHDME SIA +      EP  +++K+     TKE + T  +
Sbjct: 100 LLYILKGIKPRMFEELATRAHDMELSIASYGGKH--EPAMEQRKEK---PTKEAM-TINT 153

Query: 53  KPVKITGKRREDQ 15
            PVKI+ + ++ +
Sbjct: 154 VPVKISTRDKKKE 166


>gb|ADN33758.1| retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo
           subsp. melo]
          Length = 264

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
 Frame = -1

Query: 233 LLYILKGIKPHIF*ELATRAHDMEQSIAVHQTPRPSEPR-RQEKKDGKSFK------TKE 75
           LLYIL+GIKP  F ELATRAHDME SIA  +      P  R+EKK+ KS +      TKE
Sbjct: 141 LLYILQGIKPRTFEELATRAHDMELSIANRRNNDLLVPEVRKEKKEVKSTQKVLKGATKE 200

Query: 74  VLSTTTSKPVKITGKRREDQPR 9
            +  +T+ P+K+  K ++ + R
Sbjct: 201 AMVVSTT-PLKLVLKEKKMEKR 221


Top