BLASTX nr result
ID: Akebia24_contig00029301
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00029301
(621 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 251 2e-64
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 251 2e-64
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 240 3e-61
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 228 8e-58
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 228 8e-58
ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polyme... 224 2e-56
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 223 4e-56
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 221 1e-55
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 219 5e-55
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr... 218 1e-54
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 218 1e-54
ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prun... 218 1e-54
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 218 1e-54
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 217 2e-54
ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, par... 212 6e-53
ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arab... 209 5e-52
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 209 7e-52
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 208 9e-52
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 207 2e-51
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 207 3e-51
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 251 bits (640), Expect = 2e-64
Identities = 130/205 (63%), Positives = 155/205 (75%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA EGI VGLR Y FFVFKDGGKEEKKK ++SPVKCYFVRMES+A ID YI S K+
Sbjct: 285 IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKT 344
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+HEAR +FMHV TVSSVA YM+R SLILSKT+KL+VD + ++I+ IED C D DG ++
Sbjct: 345 VHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVV- 403
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+DGEALIHTDGTGFISEDLALKCP VYK ++ ER++D E E S++ ++ S
Sbjct: 404 YKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTES 463
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
H EPPLL+Q RLF NG AVKGT L
Sbjct: 464 HYGEPPLLMQVRLFYNGTAVKGTLL 488
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 251 bits (640), Expect = 2e-64
Identities = 130/205 (63%), Positives = 155/205 (75%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA EGI VGLR Y FFVFKDGGKEEKKK ++SPVKCYFVRMES+A ID YI S K+
Sbjct: 287 IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKT 346
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+HEAR +FMHV TVSSVA YM+R SLILSKT+KL+VD + ++I+ IED C D DG ++
Sbjct: 347 VHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVV- 405
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+DGEALIHTDGTGFISEDLALKCP VYK ++ ER++D E E S++ ++ S
Sbjct: 406 YKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTES 465
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
H EPPLL+Q RLF NG AVKGT L
Sbjct: 466 HYGEPPLLMQVRLFYNGTAVKGTLL 490
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 240 bits (612), Expect = 3e-61
Identities = 126/209 (60%), Positives = 156/209 (74%), Gaps = 4/209 (1%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA +GI +GLRRY FFVFKDGGKEEKKK+ T+S VKCYFVRMES+A ID +PY SN++
Sbjct: 328 IARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRT 387
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+ EARS+FMH H VSS+A YMARFSLILSKT+ L +D ++V++ I DI C D G +I
Sbjct: 388 VFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI- 446
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFE---RNLDCIE-FEDKSSELT 533
DG+ LIHTDGTGFISEDLAL+CP NV+KG + + + + E F++K+ +LT
Sbjct: 447 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLT 506
Query: 534 KSTSHIREPPLLIQFRLFNNGRAVKGTFL 620
+REPPLLIQFRLF NG AVKGTFL
Sbjct: 507 LPGLELREPPLLIQFRLFYNGLAVKGTFL 535
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 228 bits (582), Expect = 8e-58
Identities = 124/205 (60%), Positives = 146/205 (71%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
+ EGI+VGLR Y+FFVFKDGGKEEKKK T+SPVKC+FVRMES ASID + I S K+
Sbjct: 156 VLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASID-NQDNILSGKT 214
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
I +ARSVFMHV +SS++ YMARFSLILSKT+ L+VD + V I TI D C D DG ++
Sbjct: 215 IRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVY 274
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
DG+ LIHTDGTGFIS DLALKCP+N +KG ER E ++ E
Sbjct: 275 GTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNG-- 332
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
+PPLLIQFRLFNNGRAVKGTFL
Sbjct: 333 ---DPPLLIQFRLFNNGRAVKGTFL 354
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 228 bits (582), Expect = 8e-58
Identities = 124/205 (60%), Positives = 146/205 (71%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
+ EGI+VGLR Y+FFVFKDGGKEEKKK T+SPVKC+FVRMES ASID + I S K+
Sbjct: 178 VLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASID-NQDNILSGKT 236
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
I +ARSVFMHV +SS++ YMARFSLILSKT+ L+VD + V I TI D C D DG ++
Sbjct: 237 IRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVY 296
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
DG+ LIHTDGTGFIS DLALKCP+N +KG ER E ++ E
Sbjct: 297 GTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNG-- 354
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
+PPLLIQFRLFNNGRAVKGTFL
Sbjct: 355 ---DPPLLIQFRLFNNGRAVKGTFL 376
>ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Cucumis
sativus]
Length = 560
Score = 224 bits (570), Expect = 2e-56
Identities = 117/198 (59%), Positives = 147/198 (74%), Gaps = 4/198 (2%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA +GI +GLRRY FFVFKDGGKEEKKK+ T+S VKCYFVRMES+A ID +PY SN++
Sbjct: 353 IARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRT 412
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+ EARS+FMH H VSS+A YMARFSLILSKT+ L +D ++V++ I DI C D G +I
Sbjct: 413 VFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI- 471
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFE---RNLDCIE-FEDKSSELT 533
DG+ LIHTDGTGFISEDLAL+CP NV+KG + + + + E F++K+ +LT
Sbjct: 472 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLT 531
Query: 534 KSTSHIREPPLLIQFRLF 587
+REPPLLIQFRLF
Sbjct: 532 LPGLELREPPLLIQFRLF 549
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 223 bits (568), Expect = 4e-56
Identities = 117/205 (57%), Positives = 144/205 (70%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA GI VGLRRY+FFVFKDGGK++K K +++ KCYF+R +S ASID EKPYIFS KS
Sbjct: 278 IAKNGIMVGLRRYKFFVFKDGGKDDKNKDVSTKRAKCYFIRTDSTASIDMEKPYIFSGKS 337
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
IHEAR FMHVHT+ S+A YMARFSLILSKT KL+VD V+ + I+DI C D DG+ +
Sbjct: 338 IHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVL 397
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+++ + IH+DGTG+ISEDLA CP N+YKG C+ DK E
Sbjct: 398 DKNKKPRIHSDGTGYISEDLAQMCPVNIYKG------------KCLR-SDKIKEACG--- 441
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
+EPPLLIQFR+F NG A+KGTFL
Sbjct: 442 --QEPPLLIQFRMFYNGYAIKGTFL 464
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 221 bits (563), Expect = 1e-55
Identities = 121/209 (57%), Positives = 144/209 (68%), Gaps = 4/209 (1%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
I EGI VGLRRY FFVFKDGGKEEKKK TSSPVKC+F+R+ S+A ID YI S ++
Sbjct: 256 ICREGILVGLRRYCFFVFKDGGKEEKKKDPTSSPVKCFFIRIHSDACIDQNVSYILSGRT 315
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
I EAR +FMH HTVSSV+ YM RFSLILS TL L +D +SV+ID IED C D G I
Sbjct: 316 ISEARKLFMHAHTVSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIEDEYCQDESGNPI- 374
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
DG+ LI+TDGTGFISEDLAL CP+N+ K + + N++ + +D E
Sbjct: 375 YRDGKPLIYTDGTGFISEDLALLCPKNLEKWKRIN----DNNIEIMHNQDGHVENVAEMG 430
Query: 546 H----IREPPLLIQFRLFNNGRAVKGTFL 620
H EPP+LIQFR+FN GRAVKGTFL
Sbjct: 431 HHGTETLEPPMLIQFRMFNKGRAVKGTFL 459
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 219 bits (558), Expect = 5e-55
Identities = 120/205 (58%), Positives = 142/205 (69%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
+ EGI+VGLR Y+FFVFKDGGKEEKKK T+SPVKC+FV MES AS+D + I K+
Sbjct: 156 VLREGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVCMESVASVD-NQDNILCGKT 214
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
I +ARSVFMHV +SS++ YMARFSLILSKT+ L+VD + V I I D C D DG +
Sbjct: 215 IRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVY 274
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
DG+ LIHTDGTGFIS DLALKCP+N KG ER + ++ E
Sbjct: 275 GTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIER----LRVHNEVMEQNPECL 330
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
H +PPLLIQFRLFNNGRAVKGTFL
Sbjct: 331 H-GDPPLLIQFRLFNNGRAVKGTFL 354
>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
gi|557110063|gb|ESQ50360.1| hypothetical protein
EUTSA_v10001896mg [Eutrema salsugineum]
Length = 988
Score = 218 bits (554), Expect = 1e-54
Identities = 111/205 (54%), Positives = 139/205 (67%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA GI VGLRRYQFFVFKDGGKEEKKK ++ VKCYF+R +S ASID + PY FS KS
Sbjct: 255 IAKNGIMVGLRRYQFFVFKDGGKEEKKKDFSTKGVKCYFIRTDSTASIDLQNPYFFSGKS 314
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
IHEAR FMHV+T+ S+A YMARFSLILSKT KL+VD + I+DI C D + +
Sbjct: 315 IHEARMHFMHVNTLPSLANYMARFSLILSKTKKLEVDMTGITFQQIDDIHCHDQENNNVL 374
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
++ G+ IH+DGTG+ISEDLA CP +++KG + + +E +
Sbjct: 375 DKHGKPCIHSDGTGYISEDLARMCPTDIFKGKCIGIDNIQSKIPNVEAQGTCG------- 427
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
+EPPLLIQFR+F +G AVKGTFL
Sbjct: 428 --KEPPLLIQFRMFYDGYAVKGTFL 450
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 218 bits (554), Expect = 1e-54
Identities = 117/206 (56%), Positives = 148/206 (71%), Gaps = 1/206 (0%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA +GI VGLRRY FFVFKDGGKEEK+K+ ++ VKCYFV M+S+A D PYI SNK+
Sbjct: 264 IAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKCYFVCMKSDAESDMHTPYILSNKT 323
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
I EARS+FM VHTV ++AKYMARFSLILSKT+KL+VD SV+I+ I D CLD I+
Sbjct: 324 IQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVNIERINDKPCLDNHNEIVY 383
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+++G+ LIHTDGTGFISEDL K +N++K Y + E L+ +E K S L +
Sbjct: 384 DQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQKKVETCLNGMELNAK-SVLDEEIK 442
Query: 546 HIR-EPPLLIQFRLFNNGRAVKGTFL 620
++ + LLIQFRLF +G AVKGT L
Sbjct: 443 YVSGDLHLLIQFRLFYDGCAVKGTVL 468
>ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
gi|462399806|gb|EMJ05474.1| hypothetical protein
PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 218 bits (554), Expect = 1e-54
Identities = 118/205 (57%), Positives = 139/205 (67%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
+A EGI VGLRRYQFFVFKDGG +EKKK+ TSSPVKCYF+ + SNA+ID + Y FSN+
Sbjct: 96 VAREGILVGLRRYQFFVFKDGGNKEKKKNPTSSPVKCYFICVGSNAAIDRSEDYKFSNRK 155
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
IHE R +FMH HTVSSV+ YMARFSLILSKT L+VD + V ++ I+D CLD G I
Sbjct: 156 IHETRCIFMHAHTVSSVSNYMARFSLILSKTESLEVDWSLVKVEDIDDEYCLDESGNRI- 214
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+ DG+ LIHTDGTGFISEDLAL CP+++ K Y S E
Sbjct: 215 DRDGKPLIHTDGTGFISEDLALLCPKDLLKRDYISKEYIE-------------------- 254
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
PLL+QFRLF GRAVKGTFL
Sbjct: 255 -----PLLLQFRLFYKGRAVKGTFL 274
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 218 bits (554), Expect = 1e-54
Identities = 112/205 (54%), Positives = 139/205 (67%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA GI +GLRRYQFFVFKDGGKEEKKK L++ VKCYF+R +S AS D E PYIF+ KS
Sbjct: 274 IAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDMENPYIFTGKS 333
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
IHEAR FMHVH ++A YMARFSLILSKT L+VD + D I+DI C D DG+ +
Sbjct: 334 IHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVL 393
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+++ + IH+DGTG+ISEDLA CP N++KG C+ E+
Sbjct: 394 DKNKKPCIHSDGTGYISEDLARMCPLNIFKG------------KCLRSENIQEACN---- 437
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
++PPLLIQFR+F +G AVKGTFL
Sbjct: 438 --QDPPLLIQFRMFYDGYAVKGTFL 460
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 217 bits (553), Expect = 2e-54
Identities = 110/205 (53%), Positives = 144/205 (70%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA GI VGLRRY+FFVFKDGGKEEKKK +++ VKCYF+R +S ASID + PYIF+ KS
Sbjct: 274 IAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKS 333
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+HEAR FMHV+T+SS+ YM+RFSLILSKT L+VD + + I+DI C D D + +
Sbjct: 334 MHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVL 393
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+++G+ IH+DGTG+ISEDLA CP N++KG +++ + K+
Sbjct: 394 DKNGKPCIHSDGTGYISEDLARMCPVNIFKG---------KSMRSNNIQSKNLNFEGQGP 444
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
+EPPLLIQFR+F NG AVKGTFL
Sbjct: 445 CGQEPPLLIQFRIFYNGYAVKGTFL 469
>ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
vulgaris] gi|561026288|gb|ESW24973.1| hypothetical
protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 212 bits (540), Expect = 6e-53
Identities = 115/206 (55%), Positives = 145/206 (70%), Gaps = 4/206 (1%)
Frame = +3
Query: 15 EGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKSIHE 194
EGI VGLR Y+FFVFKDGGKEEKKK TSS VKCYFVRM+S SID YI SNK++ E
Sbjct: 249 EGINVGLRLYRFFVFKDGGKEEKKKDPTSSSVKCYFVRMQSCWSIDGSANYILSNKTVSE 308
Query: 195 ARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIRNED 374
AR +FMH H + S+ KYMARFSLILSKT KL++D A+V++ TI+D+ C D +G II + +
Sbjct: 309 ARGLFMHAHLLPSLDKYMARFSLILSKTFKLNIDLATVNVQTIQDVYCQDENGNIIYDNE 368
Query: 375 GEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSEL----TKST 542
++ TDGTGFIS DLAL CP +V KG+ + + + +E ED E+ K T
Sbjct: 369 KPRIL-TDGTGFISGDLALLCPNSVCKGNNLENNYIQEINNLLELEDMCKEMGETELKLT 427
Query: 543 SHIREPPLLIQFRLFNNGRAVKGTFL 620
+H +PPLLIQ RLF+ G A+KGT L
Sbjct: 428 TH--QPPLLIQCRLFHMGSAIKGTLL 451
>ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata] gi|297329804|gb|EFH60223.1| hypothetical protein
ARALYDRAFT_319567 [Arabidopsis lyrata subsp. lyrata]
Length = 893
Score = 209 bits (532), Expect = 5e-52
Identities = 109/205 (53%), Positives = 137/205 (66%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA GI VGLRRYQ FVFKDGGK EKKK ++ VKCYF+RM+S AS D E PYI + S
Sbjct: 269 IAKNGIMVGLRRYQIFVFKDGGKAEKKKRNSTKQVKCYFIRMDSTASSDMENPYILAGMS 328
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
IHEAR FMHVHT+ S A YMARFSLILSKT KL+VD + + I+DI C D +
Sbjct: 329 IHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTGITVKQIDDIHCHDQSNNDVL 388
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+++G+ IH+DGTG+ISEDLA CP N++KG ++ S++ + +
Sbjct: 389 DKNGKPRIHSDGTGYISEDLARMCPVNIFKG-----------------KNIKSDIIQGKT 431
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
+EPPLLIQ R+FN+G AVKG FL
Sbjct: 432 CGQEPPLLIQIRMFNDGSAVKGIFL 456
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 209 bits (531), Expect = 7e-52
Identities = 108/205 (52%), Positives = 138/205 (67%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA GI +GLRRYQFFVFKDGGKEEKKK L++ VKCYF+R +S A D + PYI + KS
Sbjct: 270 IAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKS 329
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
I+EAR FMHVH ++A YMARFSLILSKT L+VD + D I+DI C D DG+ +
Sbjct: 330 IYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVL 389
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+++ + IH+DGTG+ISEDLA CP N++KG C+ E + +
Sbjct: 390 DKNKKPCIHSDGTGYISEDLARMCPLNIFKG------------KCLRSE------SIQEA 431
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
++PPLLIQFR+F +G AVKGTFL
Sbjct: 432 CYQDPPLLIQFRMFYDGYAVKGTFL 456
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 208 bits (530), Expect = 9e-52
Identities = 119/205 (58%), Positives = 144/205 (70%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA EGI+VGLR+Y+FFVFKDGGKEEKKK+ TSS VKCYFV MES+A S K+
Sbjct: 246 IAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSA---------LSGKT 295
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+HEAR +FMH H VSSVAKYMARFSLILSKT+KLDVD ++V+I I+D D DG ++
Sbjct: 296 VHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVY 355
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+ED + LI TDGTGFISEDLAL+CP N+ +G Y ++G +S++ S
Sbjct: 356 DEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNG--------------NSDVCDS-- 399
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
PLLIQ RLFNNG AVKGT L
Sbjct: 400 ---RYPLLIQCRLFNNGCAVKGTLL 421
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 207 bits (528), Expect = 2e-51
Identities = 117/205 (57%), Positives = 140/205 (68%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLTSSPVKCYFVRMESNASIDAEKPYIFSNKS 185
IA EGI+VGLR+Y+FFVFKDGGKEEKKK+ TSS VKCYFV MES+A S K+
Sbjct: 238 IAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSA---------LSGKT 287
Query: 186 IHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGRIIR 365
+HEAR +FMH H VSSVAKYMARFSLILSKT+KLDVD ++V+I I+D D DG ++
Sbjct: 288 VHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVY 347
Query: 366 NEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTKSTS 545
+ED + LI TDGTGFISEDLAL+CP N+ +G Y ++G +
Sbjct: 348 DEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSD-------------------- 387
Query: 546 HIREPPLLIQFRLFNNGRAVKGTFL 620
PLLIQ RLFNNG AVKGT L
Sbjct: 388 -----PLLIQCRLFNNGCAVKGTLL 407
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 207 bits (526), Expect = 3e-51
Identities = 113/208 (54%), Positives = 144/208 (69%), Gaps = 3/208 (1%)
Frame = +3
Query: 6 IANEGIYVGLRRYQFFVFKDGGKEEKKKSLT---SSPVKCYFVRMESNASIDAEKPYIFS 176
I EGI VGLRRY+FFV+KD +++K ++ ++ +KCYFVR ES + + Y+FS
Sbjct: 287 IVEEGILVGLRRYRFFVYKDDKEKKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYVFS 346
Query: 177 NKSIHEARSVFMHVHTVSSVAKYMARFSLILSKTLKLDVDHASVHIDTIEDIDCLDGDGR 356
K I +AR FMHVH VS++AKY AR SLILSKT+KL V+ ASV I+ IEDI C D +G
Sbjct: 347 TKRISQARCQFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGC 406
Query: 357 IIRNEDGEALIHTDGTGFISEDLALKCPRNVYKGHYSSHGEFERNLDCIEFEDKSSELTK 536
II++EDGE IHTDGTGFISEDLA+ CP++ K Y +E +D + D +E +
Sbjct: 407 IIKDEDGEPRIHTDGTGFISEDLAMHCPKDFVKAEYIKDENYENFVDIV---DLDAERRE 463
Query: 537 STSHIREPPLLIQFRLFNNGRAVKGTFL 620
S S REPPLL+Q RLF NG AVKGTFL
Sbjct: 464 SVSWNREPPLLMQCRLFFNGCAVKGTFL 491