BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00021193
         (648 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]                88   3e-15
ref|XP_007020666.1| DNA topoisomerase I alpha isoform 3 [Theobro...    67   6e-09
ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobro...    67   6e-09
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g...    63   7e-08
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g...    60   8e-07
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]                58   3e-06

>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 61/170 (35%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
 Frame = +2

Query: 173 MAVDTHITTRHFXXXXXXXEPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVADSF 352
           MAV   +  +         EP+VFKRSN TSK  QLN + KK S QR+DG SG+ V+D  
Sbjct: 1   MAVQACVKEKMMDEIDEDDEPLVFKRSNATSKHNQLNSDTKKSS-QRYDGQSGRQVSDVP 59

Query: 353 SPKNQKSSLEKGK------------XXXXXXXXXXXXXXXXXXXXXXXXDKSKHSSEKKL 496
           S   Q SS  KGK                                    D+SKHSS++  
Sbjct: 60  STNGQSSSASKGKTTKLSSMKSPIASPKASTSFAKASPVANPKVSSSSDDRSKHSSKQNT 119

Query: 497 AINDREKKPLNKSPIEPNADSDDDKPLSARIFAASTSLPRNNSTHVSEGL 646
               +E+K L     EP  DS+D+KPLSAR+F   T L + +S + ++GL
Sbjct: 120 INVVKEEKELVNPAAEPYGDSEDEKPLSARLF---TGLTKGSSNNANKGL 166


>ref|XP_007020666.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
           gi|590606159|ref|XP_007020668.1| DNA topoisomerase I
           alpha isoform 3 [Theobroma cacao]
           gi|508720294|gb|EOY12191.1| DNA topoisomerase I alpha
           isoform 3 [Theobroma cacao] gi|508720296|gb|EOY12193.1|
           DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
          Length = 836

 Score = 66.6 bits (161), Expect = 6e-09
 Identities = 57/163 (34%), Positives = 73/163 (44%), Gaps = 31/163 (19%)
 Frame = +2

Query: 233 PIVFKRSNITS-KQKQLNLEIKKPSFQRHDGSSGKHVADSFSPKNQKSSLEKGKXXXXXX 409
           P+VFKR+N +S KQ QLN E+KK S QR DG SG+ V+D  SP  Q S+  K K      
Sbjct: 21  PVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSDVRSPNGQSSNAPKNK------ 74

Query: 410 XXXXXXXXXXXXXXXXXXDKSKHSSEKKL-------------AINDREKKPL-------- 526
                              K+  SS K L             ++ND+ K+ L        
Sbjct: 75  --SISSSKSPPVKSPILSPKASTSSTKALPVKSPVVNFKASTSLNDQSKQALKQNMTTAV 132

Query: 527 --NKSPI----EPNADSDDDK---PLSARIFAASTSLPRNNST 628
              +SPI    EPN+D DDD    PLSAR+   S    +  ST
Sbjct: 133 KEGRSPIKGTTEPNSDDDDDDDSLPLSARLKGISNQGNKGAST 175


>ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
           gi|590606147|ref|XP_007020665.1| DNA topoisomerase I
           alpha isoform 1 [Theobroma cacao]
           gi|508720292|gb|EOY12189.1| DNA topoisomerase I alpha
           isoform 1 [Theobroma cacao] gi|508720293|gb|EOY12190.1|
           DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
          Length = 904

 Score = 66.6 bits (161), Expect = 6e-09
 Identities = 57/163 (34%), Positives = 73/163 (44%), Gaps = 31/163 (19%)
 Frame = +2

Query: 233 PIVFKRSNITS-KQKQLNLEIKKPSFQRHDGSSGKHVADSFSPKNQKSSLEKGKXXXXXX 409
           P+VFKR+N +S KQ QLN E+KK S QR DG SG+ V+D  SP  Q S+  K K      
Sbjct: 21  PVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSDVRSPNGQSSNAPKNK------ 74

Query: 410 XXXXXXXXXXXXXXXXXXDKSKHSSEKKL-------------AINDREKKPL-------- 526
                              K+  SS K L             ++ND+ K+ L        
Sbjct: 75  --SISSSKSPPVKSPILSPKASTSSTKALPVKSPVVNFKASTSLNDQSKQALKQNMTTAV 132

Query: 527 --NKSPI----EPNADSDDDK---PLSARIFAASTSLPRNNST 628
              +SPI    EPN+D DDD    PLSAR+   S    +  ST
Sbjct: 133 KEGRSPIKGTTEPNSDDDDDDDSLPLSARLKGISNQGNKGAST 175


>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
           topoisomerase I [Nicotiana tabacum]
          Length = 852

 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
 Frame = +2

Query: 233 PIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVADSFSPKNQKSSLEKGKXXXXXXX 412
           P+VFKRS+ TSKQ Q N      S Q+ DG SG+  +D  SP  Q SS EK K       
Sbjct: 23  PLVFKRSSTTSKQNQSN-----SSSQKQDGRSGRQASDVRSPNGQSSSAEKVKAGTSSKA 77

Query: 413 XXXXXXXXXXXXXXXXXDKSKHSSEKKLAINDREKKPLN----------KSPIEPNA--- 553
                              S   + +  A    + K +N          K  +EP +   
Sbjct: 78  SRAVSPFTSPKASPSSGRTSPAPNSRPSASAGNQAKDVNQQSKIVPNEPKQAVEPKSEPN 137

Query: 554 ----DSDDDKPLSARIFAASTSLPRNNSTHVSEGL 646
               DS+DDKPLSAR+   S+ L ++NS+H ++ L
Sbjct: 138 DEAEDSEDDKPLSARL---SSGLSKSNSSHANKVL 169


>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
          Length = 920

 Score = 59.7 bits (143), Expect = 8e-07
 Identities = 51/172 (29%), Positives = 68/172 (39%), Gaps = 21/172 (12%)
 Frame = +2

Query: 173 MAVDTHITTRHFXXXXXXXEPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVADSF 352
           MAV+   TT           P++FKRSN  SKQ Q N E KK S QRH G S  H +D  
Sbjct: 1   MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQRHVGQSAVHTSDVR 60

Query: 353 SPKNQKSSLEKG------KXXXXXXXXXXXXXXXXXXXXXXXXDKSKHSSEKKLAINDRE 514
               + SS +KG      K                            +S     A +  +
Sbjct: 61  PANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSAGANSKPSASATSTAK 120

Query: 515 KKPLNKSP---IEP------------NADSDDDKPLSARIFAASTSLPRNNS 625
           ++  +KS    IEP            +  SDD+KPLSAR F  S+    N++
Sbjct: 121 QQNHHKSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHA 172


>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
          Length = 926

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 31/73 (42%), Positives = 39/73 (53%)
 Frame = +2

Query: 173 MAVDTHITTRHFXXXXXXXEPIVFKRSNITSKQKQLNLEIKKPSFQRHDGSSGKHVADSF 352
           MAV+   TT           P++FKRSN TSKQ Q N E KK S Q+H G S  H +D  
Sbjct: 1   MAVEACTTTNLMEDMEDDEGPVIFKRSNPTSKQNQANAEKKKLSLQKHVGQSAVHTSDVR 60

Query: 353 SPKNQKSSLEKGK 391
               + SS +KG+
Sbjct: 61  PANGESSSAQKGR 73