BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00021099
         (1742 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   302   e-146
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   273   e-140
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   285   e-139
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   268   e-138
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   288   e-138
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   282   e-137
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   273   e-135
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   284   e-135
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas...   288   e-134
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   270   e-134
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   302   e-133
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   272   e-132
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas...   288   e-132
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   270   e-132
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   268   e-131
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   273   e-131
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   270   e-130
gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   270   e-130
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S...   265   e-130
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   262   e-129

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  302 bits (774), Expect(2) = e-146
 Identities = 145/185 (78%), Positives = 163/185 (88%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLSEQFK  +IHRVYISLT+GVP+P++GR+E+P+GRD NNRIRM AVPGPSN  Q 
Sbjct: 243  HSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQA 302

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L  GGSALVEWRLETGRTHQIRAHAK+LGIPLLGDEVYGGTK+MALSL
Sbjct: 303  RHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSL 362

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ R P+S  G L+QLVS+LDRPCLHA+ALGF HP TG+N  FSC PP DFAEILS LR 
Sbjct: 363  LRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRK 422

Query: 1211 INTEK 1225
            I+TEK
Sbjct: 423  ISTEK 427



 Score =  246 bits (629), Expect(2) = e-146
 Identities = 137/209 (65%), Positives = 157/209 (75%), Gaps = 6/209 (2%)
 Frame = +1

Query: 22  SDQSQEPL---SIQRGNYAGVRLQETV---QKGSEKXXXXXXXXXXXXCVSRARVQSSIR 183
           S+ + EPL   S +R NYAGVRL+ETV      S K             +SRARVQSSIR
Sbjct: 41  SNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIR 100

Query: 184 SGHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAH 363
           SG VSVN R+++KVSHVI+ GDKVNCTISELQPLRAEPEDIPL+IVYED HVLVVNKPAH
Sbjct: 101 SGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAH 160

Query: 364 MVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLS 543
           MVVHPAPGNA+GTLVN ILHHCSLPTVAL N +  SE +D SD+E ++F+       G +
Sbjct: 161 MVVHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDISDDEFNSFA------AGQN 212

Query: 544 SRICGDSIRPGIVHRLDKGTSGLLVIAKD 630
              C  +IRPGIVHRLDKGTSGLLV+AKD
Sbjct: 213 CGTCETNIRPGIVHRLDKGTSGLLVVAKD 241


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  273 bits (697), Expect(2) = e-140
 Identities = 134/185 (72%), Positives = 152/185 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HS A L+EQFK+ TI RVY+S+T GVP+ +AGR+++PIGRD NNRIRM A+PG     + 
Sbjct: 245  HSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKS 304

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHA SRYKVIE L GGGSALVEWRLETGRTHQIRAHAKHLGIPL+GDEVYGGTK+MALSL
Sbjct: 305  RHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSL 364

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            LQ +TP    G LSQLVS++DRPCLHAL LGF+HP TGEN  F+  PP DFAEILS LR 
Sbjct: 365  LQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRA 424

Query: 1211 INTEK 1225
            I TEK
Sbjct: 425  IKTEK 429



 Score =  255 bits (652), Expect(2) = e-140
 Identities = 132/206 (64%), Positives = 160/206 (77%)
 Frame = +1

Query: 13  DSVSDQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGH 192
           DS SD S + +  +R NY+GV+L+ETV   + K             VSRARVQSSIRSG 
Sbjct: 38  DSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGL 97

Query: 193 VSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVV 372
           VSVNGRV +KVSH++K GDKV+CTI++L+PLRAEPEDIPL+IVYED HVLVVNKPAHMVV
Sbjct: 98  VSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVV 157

Query: 373 HPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRI 552
           HPAPGNA GTLV+ ILHHCSLPTV+    E+LS+ ED SD+E++ FS ++S     SS +
Sbjct: 158 HPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVM 217

Query: 553 CGDSIRPGIVHRLDKGTSGLLVIAKD 630
           C  S+RPGIVHRLDKGTSGLLV+AK+
Sbjct: 218 CESSVRPGIVHRLDKGTSGLLVVAKN 243


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  285 bits (730), Expect(2) = e-139
 Identities = 143/187 (76%), Positives = 154/187 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLSEQFK  TI RVYISLT+GVPS  +GRIEVPI RD NNRIRM A+PG +   Q 
Sbjct: 233  HSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQA 292

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L GGGSALVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTK+MA SL
Sbjct: 293  RHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSL 352

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            LQ RT     G + +LVS L RPCLHA+ALGF HPHT E  QFSCPPPADFAEILS LR 
Sbjct: 353  LQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLRE 412

Query: 1211 INTEKPS 1231
            I TEK S
Sbjct: 413  IGTEKLS 419



 Score =  238 bits (606), Expect(2) = e-139
 Identities = 130/208 (62%), Positives = 150/208 (72%)
 Frame = +1

Query: 7   TEDSVSDQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRS 186
           +  S    ++EP++    NYAGV+L+ETV   + K             +SRARVQSSIRS
Sbjct: 40  SSSSSGGNNREPIA----NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRS 95

Query: 187 GHVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHM 366
           G VS+NG+V++KVSH +K GD VNCTISELQPLRAE EDIPL+IVYED +VLVVNKPAHM
Sbjct: 96  GLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHM 155

Query: 367 VVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSS 546
           VVHPAPGNA GTLVN ILHHCSLPT+A SN E  S+ ED SD+            E  SS
Sbjct: 156 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDD------------EEFSS 203

Query: 547 RICGDSIRPGIVHRLDKGTSGLLVIAKD 630
            I G SIRPGIVHRLDKGTSGLLV+AKD
Sbjct: 204 SISGASIRPGIVHRLDKGTSGLLVVAKD 231


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  268 bits (684), Expect(2) = e-138
 Identities = 132/185 (71%), Positives = 152/185 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            +S A L+EQFK+ TI RVY+S+T GVP+ +AGR+++PIGRD NNRIRM A+PG     + 
Sbjct: 245  NSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKS 304

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHA SRYKVIE L  GGSALVEWRLETGRTHQIRAHAK+LGIPL+GDEVYGGTK+MALSL
Sbjct: 305  RHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSL 364

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            LQ +TP    G LSQLVS++DRPCLHAL LGF+HP TGEN  F+  PP DFAEILS LR 
Sbjct: 365  LQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRA 424

Query: 1211 INTEK 1225
            INTEK
Sbjct: 425  INTEK 429



 Score =  253 bits (646), Expect(2) = e-138
 Identities = 130/206 (63%), Positives = 160/206 (77%)
 Frame = +1

Query: 13  DSVSDQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGH 192
           DS SD S + +  +R NY+GV+L+ETV   + K             VSRARVQSSIRSG 
Sbjct: 38  DSDSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGL 97

Query: 193 VSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVV 372
           VSVNGRV +KVSH++K GDKV+CTI++L+PLRAEPEDIPL+IV+ED HVLVVNKPAHMVV
Sbjct: 98  VSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVV 157

Query: 373 HPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRI 552
           HPAPGNA GTLV+ ILHHCSLPT++    E+LS+ ED SD+E++ FS ++S     SS +
Sbjct: 158 HPAPGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVM 217

Query: 553 CGDSIRPGIVHRLDKGTSGLLVIAKD 630
           C  S+RPGIVHRLDKGTSGLLV+AK+
Sbjct: 218 CESSVRPGIVHRLDKGTSGLLVVAKN 243


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  288 bits (736), Expect(2) = e-138
 Identities = 140/189 (74%), Positives = 161/189 (85%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH+HLSEQFKQ TI RVYISLT GVPSP AGR+++ IGRD NNR+RM+AVPG ++  + 
Sbjct: 244  HSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRA 303

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIEVL GGGSAL++WRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMALSL
Sbjct: 304  RHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSL 363

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RTP +    LS+LVS+L+RP LHAL LGF+HPH+ E   FSC PP DFAEILS LR 
Sbjct: 364  LRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRK 423

Query: 1211 INTEKPSFK 1237
            I TEKP+FK
Sbjct: 424  IGTEKPTFK 432



 Score =  232 bits (592), Expect(2) = e-138
 Identities = 128/202 (63%), Positives = 150/202 (74%), Gaps = 1/202 (0%)
 Frame = +1

Query: 28  QSQEPLSIQRGNYAGVRLQETVQKGSE-KXXXXXXXXXXXXCVSRARVQSSIRSGHVSVN 204
           ++QEP+   R +Y GV+L+ETV    + K             +SRARVQSSI+SG V+VN
Sbjct: 54  KTQEPI---RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVN 110

Query: 205 GRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAP 384
           GRV++KVSH ++ GDKVNC ISELQPLRAEPEDIPL+IVYED HVLVVNKP HMVVHPAP
Sbjct: 111 GRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAP 170

Query: 385 GNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDS 564
           GNA GTLVN ILHHCSLPTVALS  E+LS+ ED SD+       D+    G S+     S
Sbjct: 171 GNATGTLVNGILHHCSLPTVALSEKEVLSDTEDVSDD-------DEGFCYGASA---AAS 220

Query: 565 IRPGIVHRLDKGTSGLLVIAKD 630
           +RPGIVHRLDKGTSGLLV+AKD
Sbjct: 221 VRPGIVHRLDKGTSGLLVVAKD 242


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  282 bits (722), Expect(2) = e-137
 Identities = 141/189 (74%), Positives = 157/189 (83%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLSEQFK  TI RVY+SLT GVP+PMAGRI+VPIGRD++NRIRM A+  P N  Q 
Sbjct: 256  HSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEP-NRGQA 314

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L GGGSALVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGT++MALSL
Sbjct: 315  RHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSL 374

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RT  SC   LS  +S L+RPCLHALALGF HP TG+   FSCPPP DF EILS LR 
Sbjct: 375  LRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLRE 434

Query: 1211 INTEKPSFK 1237
            + TEK SFK
Sbjct: 435  MGTEKLSFK 443



 Score =  234 bits (596), Expect(2) = e-137
 Identities = 131/207 (63%), Positives = 151/207 (72%), Gaps = 4/207 (1%)
 Frame = +1

Query: 22  SDQSQEPLSIQ----RGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSG 189
           S  ++EP S Q    R NY+GV+L+E+V   S K             +SRARVQSSI+SG
Sbjct: 60  SSSTREPNSNQNPGQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSG 119

Query: 190 HVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMV 369
            VSVNG+VI+KVSH +K GDKVNC ISELQPLRAEPE+IPL+IVYED +VLVVNKPAHMV
Sbjct: 120 LVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMV 179

Query: 370 VHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSR 549
           VHPAPGNA GTLVN ILHHCSLPTV  S+ E+LS  ED SD++           EGL S 
Sbjct: 180 VHPAPGNATGTLVNGILHHCSLPTV--SSQEVLSGAEDVSDDD----------DEGLCSS 227

Query: 550 ICGDSIRPGIVHRLDKGTSGLLVIAKD 630
               S+RPGIVHRLDKGTSGLLV+AKD
Sbjct: 228 SYAASVRPGIVHRLDKGTSGLLVVAKD 254


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  273 bits (699), Expect(2) = e-135
 Identities = 132/185 (71%), Positives = 150/185 (81%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLS QFKQ +I RVYISLT GVP   AGRIE+PI RD NNRIRM A+ G  N    
Sbjct: 242  HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHA 301

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            ++AASRY V+E+L  GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMA+SL
Sbjct: 302  KYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 361

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ R  ++C G L QLVS L+RPCLHAL LGF HPHTG+N +FSCPPP DF EILS LR 
Sbjct: 362  LRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLRE 421

Query: 1211 INTEK 1225
            I T+K
Sbjct: 422  IGTQK 426



 Score =  237 bits (605), Expect(2) = e-135
 Identities = 129/202 (63%), Positives = 149/202 (73%)
 Frame = +1

Query: 25  DQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHVSVN 204
           D+  E  S +  NYAG RL+ETV     K             +SRARVQSSIR+G VSVN
Sbjct: 48  DEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVN 107

Query: 205 GRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAP 384
           GRVI+KVSH +K GD +NCTISELQPLRAEPEDI L+IVYED HVLVVNKPAHMVVHPAP
Sbjct: 108 GRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAP 167

Query: 385 GNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDS 564
           GNA GTLVNAIL+HCSLP VA S G      E++SD+++S+   D+ S  G+ SR+    
Sbjct: 168 GNATGTLVNAILNHCSLPMVATSTG------ENESDSDVSD---DEFSSIGVFSRVSEAP 218

Query: 565 IRPGIVHRLDKGTSGLLVIAKD 630
           IRPGIVHRLDKGTSGLLV+AKD
Sbjct: 219 IRPGIVHRLDKGTSGLLVVAKD 240


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  284 bits (727), Expect(2) = e-135
 Identities = 135/188 (71%), Positives = 157/188 (83%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH  LSEQFKQRTI R+Y+SLTAGVP+P+AGR+EVP+GRD NNRIRM AV GP N ++ 
Sbjct: 257  HSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKA 316

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            R+AASRYKVIE+L GG  +LVEW+LETGRTHQIRAHAK+LG+PLLGDE+YGGTKSM LSL
Sbjct: 317  RYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSL 376

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RTP S    + ++VS+LDRPCLHA  LGF+HPHTGE   FSC PPADFAEILS LR 
Sbjct: 377  LRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRR 436

Query: 1211 INTEKPSF 1234
            I +E  SF
Sbjct: 437  IGSETVSF 444



 Score =  225 bits (574), Expect(2) = e-135
 Identities = 124/207 (59%), Positives = 151/207 (72%), Gaps = 4/207 (1%)
 Frame = +1

Query: 22  SDQSQEPLSIQRGNYAGVRLQETVQK--GSEKXXXXXXXXXXXXCVSRARVQSSIRSGHV 195
           SD   EP    + N++GVRL+E V    GS K             +SRARVQSSI+SG V
Sbjct: 54  SDSDGEP----KLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLV 109

Query: 196 SVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVH 375
            VNGRV++KVS  +K GD++ CTI+ELQ LRA P++IPL+IVYED HVLV+NKPAHMVVH
Sbjct: 110 HVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVH 169

Query: 376 PAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSR-- 549
           PAPGN +GTLVN ILHHC+LP V  S  E LS+ E DSD+E +++    SS EGL+SR  
Sbjct: 170 PAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTE-DSDDEFNSYISLASSCEGLNSRLS 228

Query: 550 ICGDSIRPGIVHRLDKGTSGLLVIAKD 630
           +  +SIRPGIVHRLDKGTSGLLV+AKD
Sbjct: 229 VASNSIRPGIVHRLDKGTSGLLVVAKD 255


>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009207|gb|ESW08114.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  288 bits (738), Expect(2) = e-134
 Identities = 137/188 (72%), Positives = 156/188 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH  LSEQFKQRTI RVY+SLTAGVP P++GR++VP+GRDLNNR+RM AV GP N R+ 
Sbjct: 254  HSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKA 313

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L GG  +LVEW+LETGRTHQIRAHAK+LG+PLLGDEVYGGTKSM LSL
Sbjct: 314  RHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSL 373

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ R+P S  G + Q+VS LDRPCLHAL LGF+HPHTGE   FSC PP DF EILS LR 
Sbjct: 374  LRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRR 433

Query: 1211 INTEKPSF 1234
            I +E  SF
Sbjct: 434  IGSESVSF 441



 Score =  220 bits (561), Expect(2) = e-134
 Identities = 117/192 (60%), Positives = 141/192 (73%), Gaps = 2/192 (1%)
 Frame = +1

Query: 61  NYAGVRLQETVQK--GSEKXXXXXXXXXXXXCVSRARVQSSIRSGHVSVNGRVINKVSHV 234
           N++G+RL+E V    GS K             +SRARVQSSI+SG V VNGRV++K S  
Sbjct: 62  NFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFN 121

Query: 235 IKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNA 414
           +K GD++ CTI+ELQ LRA PE+IPL+IVYED HVLV+NKPAHMVVHPAPGN +GTLVN 
Sbjct: 122 VKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNG 181

Query: 415 ILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLD 594
           ILHHC+LP V  S  E LS+ E D D+E++++    SS EG  SR    SIRPGIVHRLD
Sbjct: 182 ILHHCNLPNVEFSKEEGLSDTE-DCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLD 240

Query: 595 KGTSGLLVIAKD 630
           KGTSGLLV+AKD
Sbjct: 241 KGTSGLLVVAKD 252


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  270 bits (691), Expect(2) = e-134
 Identities = 132/185 (71%), Positives = 151/185 (81%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLS QFKQ +I RVYISLT GVP   AGRIE+PI RD NNRIRM A+ G +N    
Sbjct: 242  HSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTNN-PHA 300

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            ++AASRY V+E+L  GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMA+SL
Sbjct: 301  KYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSL 360

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ R  ++C G L QLVS L+RPCLHAL LGF HPHTG+N +FSCPPP DF EILS LR 
Sbjct: 361  LRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLRE 420

Query: 1211 INTEK 1225
            I T+K
Sbjct: 421  IGTQK 425



 Score =  237 bits (605), Expect(2) = e-134
 Identities = 129/202 (63%), Positives = 149/202 (73%)
 Frame = +1

Query: 25  DQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHVSVN 204
           D+  E  S +  NYAG RL+ETV     K             +SRARVQSSIR+G VSVN
Sbjct: 48  DEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVN 107

Query: 205 GRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAP 384
           GRVI+KVSH +K GD +NCTISELQPLRAEPEDI L+IVYED HVLVVNKPAHMVVHPAP
Sbjct: 108 GRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAP 167

Query: 385 GNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDS 564
           GNA GTLVNAIL+HCSLP VA S G      E++SD+++S+   D+ S  G+ SR+    
Sbjct: 168 GNATGTLVNAILNHCSLPMVATSTG------ENESDSDVSD---DEFSSIGVFSRVSEAP 218

Query: 565 IRPGIVHRLDKGTSGLLVIAKD 630
           IRPGIVHRLDKGTSGLLV+AKD
Sbjct: 219 IRPGIVHRLDKGTSGLLVVAKD 240


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  302 bits (774), Expect(2) = e-133
 Identities = 145/185 (78%), Positives = 163/185 (88%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLSEQFK  +IHRVYISLT+GVP+P++GR+E+P+GRD NNRIRM AVPGPSN  Q 
Sbjct: 389  HSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQA 448

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L  GGSALVEWRLETGRTHQIRAHAK+LGIPLLGDEVYGGTK+MALSL
Sbjct: 449  RHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSL 508

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ R P+S  G L+QLVS+LDRPCLHA+ALGF HP TG+N  FSC PP DFAEILS LR 
Sbjct: 509  LRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRK 568

Query: 1211 INTEK 1225
            I+TEK
Sbjct: 569  ISTEK 573



 Score =  202 bits (515), Expect(2) = e-133
 Identities = 126/236 (53%), Positives = 146/236 (61%), Gaps = 33/236 (13%)
 Frame = +1

Query: 22  SDQSQEPL---SIQRGNYAGVRLQETV---QKGSEKXXXXXXXXXXXXCVSRARVQSSIR 183
           S+ + EPL   S +R NYAGVRL+ETV      S K             +SRARVQSSIR
Sbjct: 170 SNSTDEPLVSVSSRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIR 229

Query: 184 SGHVSVNGRVINK---------------------------VSHVIKVGDKVNCTISELQP 282
           SG VSVN R+++K                           VSHVI+ GDKVNCTISELQP
Sbjct: 230 SGLVSVNDRIVDKAMLVSRKFEVGEGKKIEEKDPITYSEQVSHVIRAGDKVNCTISELQP 289

Query: 283 LRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGE 462
           LRAEPEDIPL+IVYED H          VVHPAPGNA+GTLVN ILHHCSLPTVAL N +
Sbjct: 290 LRAEPEDIPLDIVYEDEH----------VVHPAPGNASGTLVNGILHHCSLPTVALPNRD 339

Query: 463 ILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKD 630
             SE +D  D+E ++F+       G +   C  +IRPGIVHRLDKGTSGLLV+AKD
Sbjct: 340 --SEEDDILDDEFNSFA------AGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKD 387


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  272 bits (696), Expect(2) = e-132
 Identities = 131/185 (70%), Positives = 153/185 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHL+EQFK  TI RVYISLT+GVPSP  GR+++PIGRD NNRIRM A+PG  +  + 
Sbjct: 246  HSHAHLAEQFKLHTIERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLSRGKA 305

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE L GGGSALVEWRLETGRTHQIRAHAK++G+PLLGDEVYGGTKS+ALSL
Sbjct: 306  RHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSVALSL 365

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            LQ R   S +  + +LVS++DRPCLHA+ LGF+HP TGE  +FSCPPP+D AEI+ LLR 
Sbjct: 366  LQRRVSRSDQEQILELVSRMDRPCLHAIVLGFEHPCTGEVVKFSCPPPSDLAEIVGLLRR 425

Query: 1211 INTEK 1225
               EK
Sbjct: 426  SGREK 430



 Score =  229 bits (584), Expect(2) = e-132
 Identities = 126/199 (63%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
 Frame = +1

Query: 37  EPLSIQRGNYAGVRLQETVQKGSE-KXXXXXXXXXXXXCVSRARVQSSIRSGHVSVNGRV 213
           +P SI R N AG++L+ETV+   + K             VSRARVQSSIR G VSVNGRV
Sbjct: 57  KPESIPRVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRV 116

Query: 214 INKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNA 393
           ++KVSH +K GD+VNCTISELQPL+AEPEDIPL+IVYED H+LVVNKPAHMVVHPAPGN 
Sbjct: 117 VDKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNP 176

Query: 394 NGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRP 573
            GTLVN ILHHCSLP VA SN       EDDSD E  +   + +S   L++     S+RP
Sbjct: 177 TGTLVNGILHHCSLPCVAYSNP------EDDSDEETLSDDEEMTSSSSLAA-----SVRP 225

Query: 574 GIVHRLDKGTSGLLVIAKD 630
           GIVHRLDKGTSGLLV+AKD
Sbjct: 226 GIVHRLDKGTSGLLVVAKD 244


>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009206|gb|ESW08113.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  288 bits (738), Expect(2) = e-132
 Identities = 137/188 (72%), Positives = 156/188 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH  LSEQFKQRTI RVY+SLTAGVP P++GR++VP+GRDLNNR+RM AV GP N R+ 
Sbjct: 265  HSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKA 324

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L GG  +LVEW+LETGRTHQIRAHAK+LG+PLLGDEVYGGTKSM LSL
Sbjct: 325  RHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSL 384

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ R+P S  G + Q+VS LDRPCLHAL LGF+HPHTGE   FSC PP DF EILS LR 
Sbjct: 385  LRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRR 444

Query: 1211 INTEKPSF 1234
            I +E  SF
Sbjct: 445  IGSESVSF 452



 Score =  212 bits (539), Expect(2) = e-132
 Identities = 117/203 (57%), Positives = 141/203 (69%), Gaps = 13/203 (6%)
 Frame = +1

Query: 61  NYAGVRLQETVQK--GSEKXXXXXXXXXXXXCVSRARVQSSIRSGHVSVNGRVINK---- 222
           N++G+RL+E V    GS K             +SRARVQSSI+SG V VNGRV++K    
Sbjct: 62  NFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKKSKH 121

Query: 223 -------VSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPA 381
                   S  +K GD++ CTI+ELQ LRA PE+IPL+IVYED HVLV+NKPAHMVVHPA
Sbjct: 122 QPEQYALASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPA 181

Query: 382 PGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGD 561
           PGN +GTLVN ILHHC+LP V  S  E LS+ E D D+E++++    SS EG  SR    
Sbjct: 182 PGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTE-DCDDEVNSYGSLASSCEGSHSRPSMS 240

Query: 562 SIRPGIVHRLDKGTSGLLVIAKD 630
           SIRPGIVHRLDKGTSGLLV+AKD
Sbjct: 241 SIRPGIVHRLDKGTSGLLVVAKD 263


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508723229|gb|EOY15126.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 409

 Score =  270 bits (690), Expect(2) = e-132
 Identities = 132/181 (72%), Positives = 153/181 (84%)
 Frame = +2

Query: 695  QFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVRHAASRYK 874
            +FKQ TI RVYISLT GVPSP AGR+++ IGRD NNR+RM+AVPG ++  + RHAASRYK
Sbjct: 228  KFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYK 287

Query: 875  VIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPAS 1054
            VIEVL GGGSAL++WRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMALSLL+ RTP +
Sbjct: 288  VIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPN 347

Query: 1055 CRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSF 1234
                LS+LVS+L+RP LHAL LGF+HPH+ E   FSC PP DFAEILS LR I TEKP+F
Sbjct: 348  YNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGTEKPTF 407

Query: 1235 K 1237
            K
Sbjct: 408  K 408



 Score =  230 bits (586), Expect(2) = e-132
 Identities = 127/201 (63%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
 Frame = +1

Query: 28  QSQEPLSIQRGNYAGVRLQETVQKGSE-KXXXXXXXXXXXXCVSRARVQSSIRSGHVSVN 204
           ++QEP+   R +Y GV+L+ETV    + K             +SRARVQSSI+SG V+VN
Sbjct: 41  KTQEPI---RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVN 97

Query: 205 GRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAP 384
           GRV++KVSH ++ GDKVNC ISELQPLRAEPEDIPL+IVYED HVLVVNKP HMVVHPAP
Sbjct: 98  GRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAP 157

Query: 385 GNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDS 564
           GNA GTLVN ILHHCSLPTVALS  E+LS+ ED SD+       D+    G S+     S
Sbjct: 158 GNATGTLVNGILHHCSLPTVALSEKEVLSDTEDVSDD-------DEGFCYGASA---AAS 207

Query: 565 IRPGIVHRLDKGTSGLLVIAK 627
           +RPGIVHRLDKGTSGLLV+AK
Sbjct: 208 VRPGIVHRLDKGTSGLLVVAK 228


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  268 bits (685), Expect(2) = e-131
 Identities = 131/183 (71%), Positives = 148/183 (80%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHAHLSEQFK  TIHR YISLT GVPSP  G IE+PI RD+NNRIRM AV G +N R+ 
Sbjct: 251  HSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKA 310

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            R A SRY V+EVL GGGSALVEWRL+TGRTHQIR HAK++G PLLGDEVYGGTKSMALS 
Sbjct: 311  RLATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSR 370

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RTP+   G LSQLVS L RPCLHA +LGFKHPH+ EN  F+CPPP DFAE+L  L++
Sbjct: 371  LRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQS 430

Query: 1211 INT 1219
            I +
Sbjct: 431  IRS 433



 Score =  231 bits (588), Expect(2) = e-131
 Identities = 115/189 (60%), Positives = 140/189 (74%)
 Frame = +1

Query: 64  YAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHVSVNGRVINKVSHVIKV 243
           Y G++ + +V  GS+K             VSRAR+QSSIR G V VNG  I KVSH++KV
Sbjct: 67  YGGLQFESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKV 126

Query: 244 GDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILH 423
           GD V+CT+S LQPL+AEPED+PL+I+YED HVLVVNKPAHMVVHPAPGNANGTLVN ILH
Sbjct: 127 GDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILH 186

Query: 424 HCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGT 603
           HC+LP   L +GE+ SE +D+ DN ++ F+ D  S +      C  SIRPGIVHRLDKGT
Sbjct: 187 HCTLPAFGLPDGELTSESDDECDNGLTMFNPDPISTQ------CRSSIRPGIVHRLDKGT 240

Query: 604 SGLLVIAKD 630
           SGLLV+AK+
Sbjct: 241 SGLLVVAKN 249


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  273 bits (699), Expect(2) = e-131
 Identities = 130/184 (70%), Positives = 151/184 (82%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH  LSEQFK RTI RVYISLTAGVP+P+AGR+EVP+GRD NNR+RM AV GP    + 
Sbjct: 255  HSHMKLSEQFKLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKA 314

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKVIE+L GG  ALVEW+LETGRTHQIRAHA++LG+PLLGDEVYGGTK+M LSL
Sbjct: 315  RHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSL 374

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RT  S  G ++++VS+LDRPCLHA+ LGF+HPHTGE   FSC PP DF EILS LR 
Sbjct: 375  LRPRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRR 434

Query: 1211 INTE 1222
            I  +
Sbjct: 435  IGRQ 438



 Score =  225 bits (574), Expect(2) = e-131
 Identities = 122/205 (59%), Positives = 150/205 (73%), Gaps = 2/205 (0%)
 Frame = +1

Query: 22  SDQSQEPLSIQRGNYAGVRLQETV--QKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHV 195
           S+ + EP S    NYAGVRL+E V  +  S K             +SRARVQSSI++G V
Sbjct: 54  SNSNGEPKS----NYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLV 109

Query: 196 SVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVH 375
            VNGR+++KVS  ++ GD++ CTI+ELQ LRA PE+IPL+IVYED H+LV+NKPAHMVVH
Sbjct: 110 HVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPENIPLDIVYEDEHLLVINKPAHMVVH 169

Query: 376 PAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRIC 555
           PAPGN +GTLVN ILHHC+LP V  S  E LS+ E DSD+E++ F+    S EGL SR+ 
Sbjct: 170 PAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTE-DSDDELNGFTSQAPSCEGLDSRLS 228

Query: 556 GDSIRPGIVHRLDKGTSGLLVIAKD 630
             SIRPGIVHRLDKGTSGLLV+AKD
Sbjct: 229 IASIRPGIVHRLDKGTSGLLVVAKD 253


>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 432

 Score =  270 bits (691), Expect(2) = e-130
 Identities = 128/185 (69%), Positives = 155/185 (83%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH+HL+EQFK+ T+ RVY+SLT GVPSP++GR+++PIGRD NNRIRMVA+PG +   + 
Sbjct: 237  HSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKA 296

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHA SRYKV+E+L GGG ALVEWRLETGRTHQIRAHAK+LGIPLLGD+VYGGTK MALS 
Sbjct: 297  RHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQ 356

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            LQ +  +S  G + QLV+KL+RP LHAL+LGF+HPH GE+  FS  PP DFAEIL  LRN
Sbjct: 357  LQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRN 416

Query: 1211 INTEK 1225
            I++EK
Sbjct: 417  ISSEK 421



 Score =  225 bits (574), Expect(2) = e-130
 Identities = 125/205 (60%), Positives = 148/205 (72%)
 Frame = +1

Query: 16  SVSDQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHV 195
           S SD SQ+ +S +  N++G +++ETV   S K             +SRARVQSSIRSG V
Sbjct: 43  SDSDDSQDSISGRPNNFSGHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLV 102

Query: 196 SVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVH 375
           SVNG VI+KVSHV++ GD VNCTI+ELQPLRAEPE+IPL+IVYED H+LVVNKPAHMVVH
Sbjct: 103 SVNGHVISKVSHVVRDGDSVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVH 162

Query: 376 PAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRIC 555
           PAPGNANGTLVN ILHHC L TV   N E L +  DD D      S+D+++     S   
Sbjct: 163 PAPGNANGTLVNGILHHCRLSTVCF-NPESLPDNIDDDD------SIDEATVFPSES--- 212

Query: 556 GDSIRPGIVHRLDKGTSGLLVIAKD 630
             S+RPGIVHRLDKGTSGLLV+AKD
Sbjct: 213 --SVRPGIVHRLDKGTSGLLVVAKD 235


>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 422

 Score =  270 bits (691), Expect(2) = e-130
 Identities = 128/185 (69%), Positives = 155/185 (83%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSH+HL+EQFK+ T+ RVY+SLT GVPSP++GR+++PIGRD NNRIRMVA+PG +   + 
Sbjct: 237  HSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKA 296

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHA SRYKV+E+L GGG ALVEWRLETGRTHQIRAHAK+LGIPLLGD+VYGGTK MALS 
Sbjct: 297  RHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQ 356

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            LQ +  +S  G + QLV+KL+RP LHAL+LGF+HPH GE+  FS  PP DFAEIL  LRN
Sbjct: 357  LQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRN 416

Query: 1211 INTEK 1225
            I++EK
Sbjct: 417  ISSEK 421



 Score =  225 bits (574), Expect(2) = e-130
 Identities = 125/205 (60%), Positives = 148/205 (72%)
 Frame = +1

Query: 16  SVSDQSQEPLSIQRGNYAGVRLQETVQKGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHV 195
           S SD SQ+ +S +  N++G +++ETV   S K             +SRARVQSSIRSG V
Sbjct: 43  SDSDDSQDSISGRPNNFSGHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLV 102

Query: 196 SVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVH 375
           SVNG VI+KVSHV++ GD VNCTI+ELQPLRAEPE+IPL+IVYED H+LVVNKPAHMVVH
Sbjct: 103 SVNGHVISKVSHVVRDGDSVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVH 162

Query: 376 PAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRIC 555
           PAPGNANGTLVN ILHHC L TV   N E L +  DD D      S+D+++     S   
Sbjct: 163 PAPGNANGTLVNGILHHCRLSTVCF-NPESLPDNIDDDD------SIDEATVFPSES--- 212

Query: 556 GDSIRPGIVHRLDKGTSGLLVIAKD 630
             S+RPGIVHRLDKGTSGLLV+AKD
Sbjct: 213 --SVRPGIVHRLDKGTSGLLVVAKD 235


>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
            gi|241917257|gb|EER90401.1| hypothetical protein
            SORBIDRAFT_10g030300 [Sorghum bicolor]
          Length = 441

 Score =  265 bits (676), Expect(2) = e-130
 Identities = 130/183 (71%), Positives = 149/183 (81%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHA L+EQFK  TI RVYISLT GVP+P +GRIE  I RD NNRIRM+A+ G S  R  
Sbjct: 250  HSHAQLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIARDPNNRIRMIAIAG-SGHRYA 308

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKV EV VGGGSALVEWRLETGRTHQIRAHAK++GIPLLGDE YGGTKSMALSL
Sbjct: 309  RHAASRYKVREVFVGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSL 368

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RTP+    +LS L+SK+DRPCLHA  LGFKHPH+G+  +FSCPPP DF+E+L  LR 
Sbjct: 369  LRPRTPSKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDELRK 428

Query: 1211 INT 1219
            + +
Sbjct: 429  VTS 431



 Score =  229 bits (584), Expect(2) = e-130
 Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 3/208 (1%)
 Frame = +1

Query: 16  SVSDQSQEPLSIQRGNYAGVRLQETVQ--KGSEKXXXXXXXXXXXXCVSRARVQSSIRSG 189
           + S ++ EP   ++G + G+RL+E V   +G  +             VSRARVQ+SIR+G
Sbjct: 41  NASAEAAEPAESRKGGHGGMRLEEAVPVGEGRSRIDAWISARLGGGGVSRARVQASIRAG 100

Query: 190 HVSVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMV 369
            V+VNGR ++KVSH +K GD V+CT+SELQPLRAE EDIPL+IVYED HVLVVNKPAHMV
Sbjct: 101 LVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMV 160

Query: 370 VHPAPGNANGTLVNAILHHCSLPT-VALSNGEILSELEDDSDNEISNFSLDQSSREGLSS 546
           VHPAPGNANGTLVNAILHHC + T   L+      E  D SD++I  F++DQ + E  SS
Sbjct: 161 VHPAPGNANGTLVNAILHHCKISTFTCLARSSTGDECLDSSDDDIDVFNVDQFATEDASS 220

Query: 547 RICGDSIRPGIVHRLDKGTSGLLVIAKD 630
            +    +RPGIVHRLDKGTSGLLV+AKD
Sbjct: 221 EVRNALVRPGIVHRLDKGTSGLLVVAKD 248


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  262 bits (669), Expect(2) = e-129
 Identities = 129/181 (71%), Positives = 147/181 (81%)
 Frame = +2

Query: 671  HSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQV 850
            HSHA L+EQFK  TI RVYISLT G P+P +GRIEVPI RD NNRIRM+A PG S  R  
Sbjct: 247  HSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYA 305

Query: 851  RHAASRYKVIEVLVGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSL 1030
            RHAASRYKV EV  GGGSALVEW+LETGRTHQIRAHAK+LGIPLLGDE YGGTKSMALSL
Sbjct: 306  RHAASRYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSL 365

Query: 1031 LQCRTPASCRGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRN 1210
            L+ RT +    +LS L++K+DRPCLHA  LGFKHPH+G+  +FSCPPP DF E+L+ LR 
Sbjct: 366  LRPRTSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELRR 425

Query: 1211 I 1213
            +
Sbjct: 426  V 426



 Score =  229 bits (585), Expect(2) = e-129
 Identities = 121/206 (58%), Positives = 148/206 (71%), Gaps = 3/206 (1%)
 Frame = +1

Query: 22  SDQSQEPLSIQRGNYAGVRLQETVQ--KGSEKXXXXXXXXXXXXCVSRARVQSSIRSGHV 195
           SD + E  S +RG + G RL+E V   +G  +             VSRARVQ+SIR+G V
Sbjct: 40  SDANAEAASSRRGGHGGTRLEEAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLV 99

Query: 196 SVNGRVINKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVH 375
           +VNGR ++KVSH++K GD V+CT+SELQPLRAEPEDIPL+IVYED H+LVVNKPAHMVVH
Sbjct: 100 AVNGRPVSKVSHMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVH 159

Query: 376 PAPGNANGTLVNAILHHCSLPT-VALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRI 552
           PAPGNANGTLVNAILHHC + T   L+      E  D SD++I  F +DQ +   +SS +
Sbjct: 160 PAPGNANGTLVNAILHHCKISTFTCLARNSTDDECPDSSDDDIDVFHVDQFTTGEVSSEV 219

Query: 553 CGDSIRPGIVHRLDKGTSGLLVIAKD 630
               +RPGIVHRLDKGTSGLLV+AKD
Sbjct: 220 REALVRPGIVHRLDKGTSGLLVVAKD 245