BLASTX nr result
ID: Akebia24_contig00011354
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00011354
(572 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 189 4e-46
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 189 4e-46
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr... 184 2e-44
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,... 182 5e-44
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis] 179 3e-43
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,... 174 1e-41
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t... 174 1e-41
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca... 172 6e-41
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca... 172 6e-41
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun... 171 1e-40
ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [A... 167 1e-39
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,... 162 4e-38
ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phas... 160 2e-37
ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phas... 160 2e-37
ref|XP_007148892.1| hypothetical protein PHAVU_005G023100g [Phas... 160 2e-37
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,... 156 4e-36
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab... 154 1e-35
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,... 154 2e-35
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 154 2e-35
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr... 150 2e-34
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 189 bits (480), Expect = 4e-46
Identities = 98/147 (66%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GS+CEM+AKI+EA T+LSRRL R PTY EIA+ I V VS VRLV ERSR+PIS+D+ +T
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+GC LQ IIPGPDE P+ MV +QLMKQ+V+ L TL ERE ILRL++G+NGETP S
Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 280
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIGRL+ LSRER+RQI+ IAL+KLRQ
Sbjct: 281 EEIGRLMKLSRERVRQINSIALSKLRQ 307
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 189 bits (480), Expect = 4e-46
Identities = 98/147 (66%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GS+CEM+AKI+EA T+LSRRL R PTY EIA+ I V VS VRLV ERSR+PIS+D+ +T
Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 327
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+GC LQ IIPGPDE P+ MV +QLMKQ+V+ L TL ERE ILRL++G+NGETP S
Sbjct: 328 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 387
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIGRL+ LSRER+RQI+ IAL+KLRQ
Sbjct: 388 EEIGRLMKLSRERVRQINSIALSKLRQ 414
>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
gi|557541154|gb|ESR52198.1| hypothetical protein
CICLE_v10033747mg [Citrus clementina]
Length = 436
Score = 184 bits (466), Expect = 2e-44
Identities = 99/159 (62%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GSM M+AKI+EAN +LSRRL R PT +EIA+ + + VS VRL ER+R PIS+D IT
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITD 337
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
GC LQ IIPGPDE PE MV KQLMKQ+++ LL+TL+ERE ILRLH+GL+G+TP SC
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
+EIGRLL LSRER+RQI IALTKL+Q + N +++MV
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436
>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Citrus sinensis]
Length = 436
Score = 182 bits (462), Expect = 5e-44
Identities = 99/159 (62%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GSM M+AKI+EAN +LSRRL R PT EIA+ + + VS VRL ER+R PIS+D IT
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITD 337
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
GC LQ IIPGPDE PE MV KQLMKQ+++ LL+TL+ERE ILRLH+GL+G+TP SC
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
+EIGRLL LSRER+RQI IALTKL+Q + N +++MV
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436
>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 422
Score = 179 bits (455), Expect = 3e-43
Identities = 94/148 (63%), Positives = 118/148 (79%), Gaps = 2/148 (1%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G+MC ++AK++EAN +L++RL R PTY EIA + V VS VRLV ER R PIS+DR IT
Sbjct: 261 GNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITE 320
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRS 218
GC LQ IIPGP+E+ PE MV KQLMKQ+++ LLKT L++RE +LRLH+GL+G+ P S
Sbjct: 321 RGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLS 380
Query: 217 CEEIGRLLNLSRERIRQIHCIALTKLRQ 134
CEEIGRLL LSRERIRQI+ IAL+KL+Q
Sbjct: 381 CEEIGRLLKLSRERIRQINGIALSKLQQ 408
>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 452
Score = 174 bits (442), Expect = 1e-41
Identities = 88/147 (59%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G MC ++AKI+ A ++R R P++ EIA+ I V SIVRLVCERSR P+S+DR +T
Sbjct: 294 GHMCGVMAKITRAKKNFNQRFQRLPSHDEIAEMINVQASIVRLVCERSRLPLSLDRVVTD 353
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+GC LQ II GPDE+ PETM+ KQLMKQ+++ LL L++RE +LRLH+GLNG+TP+S
Sbjct: 354 QGCMALQDIIRGPDEMMPETMLKKQLMKQEMEKLLNRLSDREAEVLRLHFGLNGDTPQSF 413
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIGRLL LSRER+RQI+ IAL+KL+Q
Sbjct: 414 EEIGRLLKLSRERVRQINSIALSKLKQ 440
>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
rpoD [Medicago truncatula]
Length = 185
Score = 174 bits (441), Expect = 1e-41
Identities = 95/147 (64%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G M+AKI+EAN +L RRL R+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT
Sbjct: 27 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 86
Query: 391 EGCSIL-QIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+ IL +IIPGP E+ PE MV +QLMKQ V LL TL++REE I+RL++GLNGETP S
Sbjct: 87 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 146
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIG+LL LSRERIRQIH IAL+KLRQ
Sbjct: 147 EEIGKLLKLSRERIRQIHGIALSKLRQ 173
>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 267
Score = 172 bits (436), Expect = 6e-41
Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G M+AKI+EAN +L RRL R+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT
Sbjct: 109 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 168
Query: 391 EGCSIL-QIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+ IL +IIPGP E+ PE MV +QLMKQ V LL TL++REE I+RL++GLNGETP S
Sbjct: 169 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 228
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIG+LL LSRERIRQIH IAL+KL Q
Sbjct: 229 EEIGKLLKLSRERIRQIHGIALSKLEQ 255
>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 403
Score = 172 bits (436), Expect = 6e-41
Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G M+AKI+EAN +L RRL R+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT
Sbjct: 245 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 304
Query: 391 EGCSIL-QIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+ IL +IIPGP E+ PE MV +QLMKQ V LL TL++REE I+RL++GLNGETP S
Sbjct: 305 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 364
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIG+LL LSRERIRQIH IAL+KL Q
Sbjct: 365 EEIGKLLKLSRERIRQIHGIALSKLEQ 391
>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
gi|462415663|gb|EMJ20400.1| hypothetical protein
PRUPE_ppa017025mg [Prunus persica]
Length = 440
Score = 171 bits (434), Expect = 1e-40
Identities = 90/159 (56%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G +C M+AKI++A L++R R P++ EIA+ I+V S V+LVCERSR PIS+DR T
Sbjct: 282 GHVCGMMAKITKAQNSLNQRFQRLPSHDEIAEVIKVNASTVKLVCERSRPPISLDRVATV 341
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
G LQ II GP+E+ PE M+ +QLMKQ+V+ LLKTL++RE +LRLH+GLNGE+P+S
Sbjct: 342 RGSMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSF 401
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
EEIGRLL LSRER+RQI+ IAL+KLRQ + N ++++V
Sbjct: 402 EEIGRLLKLSRERVRQINGIALSKLRQTSILDNLKLYIV 440
>ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
gi|548854777|gb|ERN12687.1| hypothetical protein
AMTR_s00025p00248060 [Amborella trichopoda]
Length = 449
Score = 167 bits (424), Expect = 1e-39
Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GSMC +AK+SEA+ +L RLGR+P+ EIA+ + +S VRLV ER R P+SID+ +
Sbjct: 289 GSMCATVAKVSEASGVLMSRLGRRPSQEEIAEKTGIALSRVRLVTERCRLPLSIDQPLGR 348
Query: 391 EG-CSILQIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
G S+ II GP+E RPE MV ++ MK ++ LL+TL+EREE I+RL +G+NGETP+SC
Sbjct: 349 HGDISLKDIIAGPEETRPEEMVKREWMKGTMEMLLQTLSEREECIVRLQFGMNGETPKSC 408
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
+EIGRLLNLSRER+RQIH IAL KLRQ
Sbjct: 409 DEIGRLLNLSRERVRQIHYIALAKLRQ 435
>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cicer arietinum]
Length = 407
Score = 162 bits (411), Expect = 4e-38
Identities = 87/150 (58%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
G M+ KI+EA +LS+RL R+PTY+E+A+ + V VSIV+LV ERSR PIS+D+ +
Sbjct: 249 GEKYGMVGKIAEAKNVLSKRLRRKPTYNEMAEVLNVNVSIVKLVSERSRQPISLDKAVFD 308
Query: 391 EG-CSILQIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
+G ++ +I+PGP E+ PE MV +QL KQ V LL TLN+RE ILRL++GLNGETP S
Sbjct: 309 QGNLTLKEIMPGPVEMIPEKMVERQLKKQGVVKLLNTLNKREAEILRLYFGLNGETPLSF 368
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL 125
EEIG+ L LSRERIRQIH IAL+KL+Q L
Sbjct: 369 EEIGKQLKLSRERIRQIHGIALSKLQQTTL 398
>ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
gi|561022159|gb|ESW20889.1| hypothetical protein
PHAVU_005G023100g [Phaseolus vulgaris]
Length = 367
Score = 160 bits (405), Expect = 2e-37
Identities = 84/155 (54%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Frame = -2
Query: 559 EMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITHEGCS 380
EM+AK+++AN +LS RL R+PTY E A+ + V S +RLV E+SR PIS+D+ +T G
Sbjct: 213 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 272
Query: 379 ILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 203
LQ IIPGP+++ PE MV +QLMKQ+V LL TL++RE I+ L+YGLNGETP + +EIG
Sbjct: 273 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 332
Query: 202 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
++ LSRERIRQI+ IAL+KLRQ + N + ++V
Sbjct: 333 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 367
>ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
gi|561022157|gb|ESW20887.1| hypothetical protein
PHAVU_005G023100g [Phaseolus vulgaris]
Length = 366
Score = 160 bits (405), Expect = 2e-37
Identities = 84/155 (54%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Frame = -2
Query: 559 EMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITHEGCS 380
EM+AK+++AN +LS RL R+PTY E A+ + V S +RLV E+SR PIS+D+ +T G
Sbjct: 212 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 271
Query: 379 ILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 203
LQ IIPGP+++ PE MV +QLMKQ+V LL TL++RE I+ L+YGLNGETP + +EIG
Sbjct: 272 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 331
Query: 202 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
++ LSRERIRQI+ IAL+KLRQ + N + ++V
Sbjct: 332 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 366
>ref|XP_007148892.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
gi|561022156|gb|ESW20886.1| hypothetical protein
PHAVU_005G023100g [Phaseolus vulgaris]
Length = 296
Score = 160 bits (405), Expect = 2e-37
Identities = 84/155 (54%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Frame = -2
Query: 559 EMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITHEGCS 380
EM+AK+++AN +LS RL R+PTY E A+ + V S +RLV E+SR PIS+D+ +T G
Sbjct: 142 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 201
Query: 379 ILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 203
LQ IIPGP+++ PE MV +QLMKQ+V LL TL++RE I+ L+YGLNGETP + +EIG
Sbjct: 202 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 261
Query: 202 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
++ LSRERIRQI+ IAL+KLRQ + N + ++V
Sbjct: 262 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 296
>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum lycopersicum]
Length = 442
Score = 156 bits (394), Expect = 4e-36
Identities = 83/148 (56%), Positives = 113/148 (76%), Gaps = 2/148 (1%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GS+ E++ KI ANT LSR+L R P+Y EIA+ + + VS VRLV ER+R+PISID+ +T
Sbjct: 283 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTT 342
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRS 218
+G LQ II GP++ PE V +Q+MKQ ++ +L+ L +RE IL+LH+GLNG+TP+S
Sbjct: 343 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQS 402
Query: 217 CEEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIGR+L LSRERIRQI+C AL+KLR+
Sbjct: 403 FEEIGRVLKLSRERIRQINCTALSKLRE 430
>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
Length = 273
Score = 154 bits (390), Expect = 1e-35
Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GSM E+ AK++EA+ +L+R+L RQP+ EIA+ + + VS VRL ERSRSP+S+DR ++
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQ 171
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
G LQ I+ GPDE RPE MV ++ MK +++ LL +L RE +L L++GLNGETP S
Sbjct: 172 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 231
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQI 131
EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 232 EEIGKSLKLSRERVRQINGIALKKLRNV 259
>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum tuberosum]
Length = 421
Score = 154 bits (389), Expect = 2e-35
Identities = 82/148 (55%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GS+ E++ KI ANT LSR+L R P+Y EIA+ + + VS VRLV ER+R+PISID+ +T
Sbjct: 262 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTS 321
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLL-KTLNEREELILRLHYGLNGETPRS 218
+G LQ II GP++ PE V +Q+MKQ ++ +L L +RE IL+LH+GLNG+ P+S
Sbjct: 322 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQS 381
Query: 217 CEEIGRLLNLSRERIRQIHCIALTKLRQ 134
EEIGR+L LSRERIRQI+C AL+KLR+
Sbjct: 382 FEEIGRVLKLSRERIRQINCTALSKLRE 409
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 154 bits (388), Expect = 2e-35
Identities = 80/148 (54%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GSM E+ AK++EA+ +L+R+L RQP+ EIA+ + + VS VRL ERSRSP+S+DR +
Sbjct: 258 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQ 317
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
G LQ I+ GPDE RPE MV ++ MK +++ LL +L RE +L L++GLNGETP S
Sbjct: 318 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 377
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQI 131
EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 378 EEIGKSLKLSRERVRQINGIALKKLRNV 405
>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
gi|557100961|gb|ESQ41324.1| hypothetical protein
EUTSA_v10013654mg [Eutrema salsugineum]
Length = 421
Score = 150 bits (379), Expect = 2e-34
Identities = 79/148 (53%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
Frame = -2
Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
GSM E+ AK++EA+ +L+R+L R P+ EIA+ + + VS VRL ER RSP+S+DR +
Sbjct: 260 GSMWELTAKVAEASNVLTRKLKRIPSCEEIAEHLNIHVSAVRLAVERGRSPVSLDRVASL 319
Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
G LQ I+ GPDE RPE MV ++ MK +++ LL +L RE +L L++GLNGETP S
Sbjct: 320 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 379
Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQI 131
EEIG+ L LSRER+RQI+ IALTKLR +
Sbjct: 380 EEIGKSLKLSRERVRQINGIALTKLRNV 407