BLASTX nr result

ID: Akebia24_contig00011354 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00011354
         (572 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              189   4e-46
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   189   4e-46
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   184   2e-44
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   182   5e-44
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]     179   3e-43
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,...   174   1e-41
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t...   174   1e-41
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   172   6e-41
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   172   6e-41
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun...   171   1e-40
ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [A...   167   1e-39
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,...   162   4e-38
ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phas...   160   2e-37
ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phas...   160   2e-37
ref|XP_007148892.1| hypothetical protein PHAVU_005G023100g [Phas...   160   2e-37
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,...   156   4e-36
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab...   154   1e-35
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   154   2e-35
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   154   2e-35
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr...   150   2e-34

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  189 bits (480), Expect = 4e-46
 Identities = 98/147 (66%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GS+CEM+AKI+EA T+LSRRL R PTY EIA+ I V VS VRLV ERSR+PIS+D+ +T 
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +GC  LQ IIPGPDE  P+ MV +QLMKQ+V+  L TL ERE  ILRL++G+NGETP S 
Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 280

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           EEIGRL+ LSRER+RQI+ IAL+KLRQ
Sbjct: 281 EEIGRLMKLSRERVRQINSIALSKLRQ 307


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  189 bits (480), Expect = 4e-46
 Identities = 98/147 (66%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GS+CEM+AKI+EA T+LSRRL R PTY EIA+ I V VS VRLV ERSR+PIS+D+ +T 
Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 327

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +GC  LQ IIPGPDE  P+ MV +QLMKQ+V+  L TL ERE  ILRL++G+NGETP S 
Sbjct: 328 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 387

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           EEIGRL+ LSRER+RQI+ IAL+KLRQ
Sbjct: 388 EEIGRLMKLSRERVRQINSIALSKLRQ 414


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
           gi|557541154|gb|ESR52198.1| hypothetical protein
           CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  184 bits (466), Expect = 2e-44
 Identities = 99/159 (62%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GSM  M+AKI+EAN +LSRRL R PT +EIA+ + + VS VRL  ER+R PIS+D  IT 
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITD 337

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            GC  LQ IIPGPDE  PE MV KQLMKQ+++ LL+TL+ERE  ILRLH+GL+G+TP SC
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
           +EIGRLL LSRER+RQI  IALTKL+Q  +  N +++MV
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Citrus sinensis]
          Length = 436

 Score =  182 bits (462), Expect = 5e-44
 Identities = 99/159 (62%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GSM  M+AKI+EAN +LSRRL R PT  EIA+ + + VS VRL  ER+R PIS+D  IT 
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITD 337

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            GC  LQ IIPGPDE  PE MV KQLMKQ+++ LL+TL+ERE  ILRLH+GL+G+TP SC
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
           +EIGRLL LSRER+RQI  IALTKL+Q  +  N +++MV
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436


>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 422

 Score =  179 bits (455), Expect = 3e-43
 Identities = 94/148 (63%), Positives = 118/148 (79%), Gaps = 2/148 (1%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G+MC ++AK++EAN +L++RL R PTY EIA  + V VS VRLV ER R PIS+DR IT 
Sbjct: 261 GNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITE 320

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRS 218
            GC  LQ IIPGP+E+ PE MV KQLMKQ+++ LLKT L++RE  +LRLH+GL+G+ P S
Sbjct: 321 RGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLS 380

Query: 217 CEEIGRLLNLSRERIRQIHCIALTKLRQ 134
           CEEIGRLL LSRERIRQI+ IAL+KL+Q
Sbjct: 381 CEEIGRLLKLSRERIRQINGIALSKLQQ 408


>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 452

 Score =  174 bits (442), Expect = 1e-41
 Identities = 88/147 (59%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G MC ++AKI+ A    ++R  R P++ EIA+ I V  SIVRLVCERSR P+S+DR +T 
Sbjct: 294 GHMCGVMAKITRAKKNFNQRFQRLPSHDEIAEMINVQASIVRLVCERSRLPLSLDRVVTD 353

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +GC  LQ II GPDE+ PETM+ KQLMKQ+++ LL  L++RE  +LRLH+GLNG+TP+S 
Sbjct: 354 QGCMALQDIIRGPDEMMPETMLKKQLMKQEMEKLLNRLSDREAEVLRLHFGLNGDTPQSF 413

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           EEIGRLL LSRER+RQI+ IAL+KL+Q
Sbjct: 414 EEIGRLLKLSRERVRQINSIALSKLKQ 440


>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 185

 Score =  174 bits (441), Expect = 1e-41
 Identities = 95/147 (64%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G    M+AKI+EAN +L RRL R+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT 
Sbjct: 27  GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 86

Query: 391 EGCSIL-QIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +   IL +IIPGP E+ PE MV +QLMKQ V  LL TL++REE I+RL++GLNGETP S 
Sbjct: 87  QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 146

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           EEIG+LL LSRERIRQIH IAL+KLRQ
Sbjct: 147 EEIGKLLKLSRERIRQIHGIALSKLRQ 173


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score =  172 bits (436), Expect = 6e-41
 Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G    M+AKI+EAN +L RRL R+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT 
Sbjct: 109 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 168

Query: 391 EGCSIL-QIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +   IL +IIPGP E+ PE MV +QLMKQ V  LL TL++REE I+RL++GLNGETP S 
Sbjct: 169 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 228

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           EEIG+LL LSRERIRQIH IAL+KL Q
Sbjct: 229 EEIGKLLKLSRERIRQIHGIALSKLEQ 255


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  172 bits (436), Expect = 6e-41
 Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G    M+AKI+EAN +L RRL R+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT 
Sbjct: 245 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 304

Query: 391 EGCSIL-QIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +   IL +IIPGP E+ PE MV +QLMKQ V  LL TL++REE I+RL++GLNGETP S 
Sbjct: 305 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 364

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           EEIG+LL LSRERIRQIH IAL+KL Q
Sbjct: 365 EEIGKLLKLSRERIRQIHGIALSKLEQ 391


>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
           gi|462415663|gb|EMJ20400.1| hypothetical protein
           PRUPE_ppa017025mg [Prunus persica]
          Length = 440

 Score =  171 bits (434), Expect = 1e-40
 Identities = 90/159 (56%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G +C M+AKI++A   L++R  R P++ EIA+ I+V  S V+LVCERSR PIS+DR  T 
Sbjct: 282 GHVCGMMAKITKAQNSLNQRFQRLPSHDEIAEVIKVNASTVKLVCERSRPPISLDRVATV 341

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            G   LQ II GP+E+ PE M+ +QLMKQ+V+ LLKTL++RE  +LRLH+GLNGE+P+S 
Sbjct: 342 RGSMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSF 401

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
           EEIGRLL LSRER+RQI+ IAL+KLRQ  +  N ++++V
Sbjct: 402 EEIGRLLKLSRERVRQINGIALSKLRQTSILDNLKLYIV 440


>ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
           gi|548854777|gb|ERN12687.1| hypothetical protein
           AMTR_s00025p00248060 [Amborella trichopoda]
          Length = 449

 Score =  167 bits (424), Expect = 1e-39
 Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GSMC  +AK+SEA+ +L  RLGR+P+  EIA+   + +S VRLV ER R P+SID+ +  
Sbjct: 289 GSMCATVAKVSEASGVLMSRLGRRPSQEEIAEKTGIALSRVRLVTERCRLPLSIDQPLGR 348

Query: 391 EG-CSILQIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            G  S+  II GP+E RPE MV ++ MK  ++ LL+TL+EREE I+RL +G+NGETP+SC
Sbjct: 349 HGDISLKDIIAGPEETRPEEMVKREWMKGTMEMLLQTLSEREECIVRLQFGMNGETPKSC 408

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQ 134
           +EIGRLLNLSRER+RQIH IAL KLRQ
Sbjct: 409 DEIGRLLNLSRERVRQIHYIALAKLRQ 435


>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Cicer arietinum]
          Length = 407

 Score =  162 bits (411), Expect = 4e-38
 Identities = 87/150 (58%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           G    M+ KI+EA  +LS+RL R+PTY+E+A+ + V VSIV+LV ERSR PIS+D+ +  
Sbjct: 249 GEKYGMVGKIAEAKNVLSKRLRRKPTYNEMAEVLNVNVSIVKLVSERSRQPISLDKAVFD 308

Query: 391 EG-CSILQIIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
           +G  ++ +I+PGP E+ PE MV +QL KQ V  LL TLN+RE  ILRL++GLNGETP S 
Sbjct: 309 QGNLTLKEIMPGPVEMIPEKMVERQLKKQGVVKLLNTLNKREAEILRLYFGLNGETPLSF 368

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQILL 125
           EEIG+ L LSRERIRQIH IAL+KL+Q  L
Sbjct: 369 EEIGKQLKLSRERIRQIHGIALSKLQQTTL 398


>ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022159|gb|ESW20889.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 367

 Score =  160 bits (405), Expect = 2e-37
 Identities = 84/155 (54%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
 Frame = -2

Query: 559 EMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITHEGCS 380
           EM+AK+++AN +LS RL R+PTY E A+ + V  S +RLV E+SR PIS+D+ +T  G  
Sbjct: 213 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 272

Query: 379 ILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 203
            LQ IIPGP+++ PE MV +QLMKQ+V  LL TL++RE  I+ L+YGLNGETP + +EIG
Sbjct: 273 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 332

Query: 202 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
            ++ LSRERIRQI+ IAL+KLRQ  +  N + ++V
Sbjct: 333 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 367


>ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022157|gb|ESW20887.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 366

 Score =  160 bits (405), Expect = 2e-37
 Identities = 84/155 (54%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
 Frame = -2

Query: 559 EMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITHEGCS 380
           EM+AK+++AN +LS RL R+PTY E A+ + V  S +RLV E+SR PIS+D+ +T  G  
Sbjct: 212 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 271

Query: 379 ILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 203
            LQ IIPGP+++ PE MV +QLMKQ+V  LL TL++RE  I+ L+YGLNGETP + +EIG
Sbjct: 272 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 331

Query: 202 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
            ++ LSRERIRQI+ IAL+KLRQ  +  N + ++V
Sbjct: 332 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 366


>ref|XP_007148892.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022156|gb|ESW20886.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 296

 Score =  160 bits (405), Expect = 2e-37
 Identities = 84/155 (54%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
 Frame = -2

Query: 559 EMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITHEGCS 380
           EM+AK+++AN +LS RL R+PTY E A+ + V  S +RLV E+SR PIS+D+ +T  G  
Sbjct: 142 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 201

Query: 379 ILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 203
            LQ IIPGP+++ PE MV +QLMKQ+V  LL TL++RE  I+ L+YGLNGETP + +EIG
Sbjct: 202 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 261

Query: 202 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 98
            ++ LSRERIRQI+ IAL+KLRQ  +  N + ++V
Sbjct: 262 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 296


>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum lycopersicum]
          Length = 442

 Score =  156 bits (394), Expect = 4e-36
 Identities = 83/148 (56%), Positives = 113/148 (76%), Gaps = 2/148 (1%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GS+ E++ KI  ANT LSR+L R P+Y EIA+ + + VS VRLV ER+R+PISID+ +T 
Sbjct: 283 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTT 342

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRS 218
           +G   LQ II GP++  PE  V +Q+MKQ ++ +L+  L +RE  IL+LH+GLNG+TP+S
Sbjct: 343 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQS 402

Query: 217 CEEIGRLLNLSRERIRQIHCIALTKLRQ 134
            EEIGR+L LSRERIRQI+C AL+KLR+
Sbjct: 403 FEEIGRVLKLSRERIRQINCTALSKLRE 430


>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
           lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
           ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  154 bits (390), Expect = 1e-35
 Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GSM E+ AK++EA+ +L+R+L RQP+  EIA+ + + VS VRL  ERSRSP+S+DR ++ 
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQ 171

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            G   LQ I+ GPDE RPE MV ++ MK +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 172 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 231

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQI 131
           EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 232 EEIGKSLKLSRERVRQINGIALKKLRNV 259


>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum tuberosum]
          Length = 421

 Score =  154 bits (389), Expect = 2e-35
 Identities = 82/148 (55%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GS+ E++ KI  ANT LSR+L R P+Y EIA+ + + VS VRLV ER+R+PISID+ +T 
Sbjct: 262 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTS 321

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLL-KTLNEREELILRLHYGLNGETPRS 218
           +G   LQ II GP++  PE  V +Q+MKQ ++ +L   L +RE  IL+LH+GLNG+ P+S
Sbjct: 322 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQS 381

Query: 217 CEEIGRLLNLSRERIRQIHCIALTKLRQ 134
            EEIGR+L LSRERIRQI+C AL+KLR+
Sbjct: 382 FEEIGRVLKLSRERIRQINCTALSKLRE 409


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score =  154 bits (388), Expect = 2e-35
 Identities = 80/148 (54%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GSM E+ AK++EA+ +L+R+L RQP+  EIA+ + + VS VRL  ERSRSP+S+DR  + 
Sbjct: 258 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQ 317

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            G   LQ I+ GPDE RPE MV ++ MK +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 318 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 377

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQI 131
           EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 378 EEIGKSLKLSRERVRQINGIALKKLRNV 405


>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
           gi|557100961|gb|ESQ41324.1| hypothetical protein
           EUTSA_v10013654mg [Eutrema salsugineum]
          Length = 421

 Score =  150 bits (379), Expect = 2e-34
 Identities = 79/148 (53%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
 Frame = -2

Query: 571 GSMCEMLAKISEANTLLSRRLGRQPTYHEIADTIQVGVSIVRLVCERSRSPISIDRTITH 392
           GSM E+ AK++EA+ +L+R+L R P+  EIA+ + + VS VRL  ER RSP+S+DR  + 
Sbjct: 260 GSMWELTAKVAEASNVLTRKLKRIPSCEEIAEHLNIHVSAVRLAVERGRSPVSLDRVASL 319

Query: 391 EGCSILQ-IIPGPDELRPETMVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 215
            G   LQ I+ GPDE RPE MV ++ MK +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 320 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 379

Query: 214 EEIGRLLNLSRERIRQIHCIALTKLRQI 131
           EEIG+ L LSRER+RQI+ IALTKLR +
Sbjct: 380 EEIGKSLKLSRERVRQINGIALTKLRNV 407


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