BLASTX nr result
ID: Akebia24_contig00003131
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00003131
(1491 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-... 490 e-136
ref|XP_006432134.1| hypothetical protein CICLE_v10000096mg [Citr... 479 e-132
ref|XP_006432133.1| hypothetical protein CICLE_v10000096mg [Citr... 479 e-132
ref|XP_006432136.1| hypothetical protein CICLE_v10000096mg [Citr... 451 e-124
ref|XP_007048407.1| Chromatin remodeling 24 [Theobroma cacao] gi... 438 e-120
ref|XP_002516323.1| ATP binding protein, putative [Ricinus commu... 437 e-120
gb|EXB36902.1| DNA excision repair protein ERCC-6-like protein [... 437 e-120
ref|XP_006465090.1| PREDICTED: DNA excision repair protein ERCC-... 432 e-118
ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-... 429 e-117
ref|XP_002306264.2| hypothetical protein POPTR_0005s06770g [Popu... 427 e-117
ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-... 426 e-116
ref|XP_002309928.1| hypothetical protein POPTR_0007s04450g [Popu... 426 e-116
ref|XP_006465091.1| PREDICTED: DNA excision repair protein ERCC-... 414 e-113
ref|XP_004289286.1| PREDICTED: DNA excision repair protein ERCC-... 413 e-113
ref|XP_004229292.1| PREDICTED: uncharacterized protein LOC101245... 412 e-112
ref|XP_006345475.1| PREDICTED: DNA excision repair protein ERCC-... 411 e-112
ref|XP_006279923.1| hypothetical protein CARUB_v10025781mg [Caps... 383 e-103
ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arab... 382 e-103
ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis th... 381 e-103
ref|XP_003630305.1| DNA excision repair protein ERCC-6-like prot... 379 e-102
>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
gi|296088517|emb|CBI37508.3| unnamed protein product
[Vitis vinifera]
Length = 1043
Score = 490 bits (1262), Expect = e-136
Identities = 287/518 (55%), Positives = 336/518 (64%), Gaps = 54/518 (10%)
Frame = +1
Query: 100 MAEKKP-MSLNERHQRLLEGFSSQNQSAKTSSNPP------------------------E 204
MAEKK MSLNERH RLL+ S+Q K P E
Sbjct: 1 MAEKKKAMSLNERHNRLLQDLSAQASKHKPEQQPSAQNHALLSFSTISEFHSPPDEAKEE 60
Query: 205 EKPTKVKLHGRRRLCKISSTDNDTGNQIG--FDEPNFSGITDFDSPPV-------KIRDI 357
EKP KVKL GRRRLCK+SS D+D + G F EP FS I+DFDSP +IR I
Sbjct: 61 EKPVKVKLQGRRRLCKLSSNDDDENTKTGDGFYEPKFSEISDFDSPHHCSNAGGNEIRGI 120
Query: 358 LDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNE---EFPEYASADSSFSLTP 528
L+DLSS+LE LSIE R K + + +S D N E + PEYASA SSFS+T
Sbjct: 121 LNDLSSRLESLSIETKRNPKRADQTRESLNFAAADVAINQEKKLDVPEYASASSSFSVTS 180
Query: 529 DPLDSSS----VGASKPRAQND---GTQ--SESDVDSFFDRVN-DVNSGEGKKKSPIIDI 678
D DSS VG +D G++ S DVD+F RV+ + ++GE
Sbjct: 181 DGADSSPDAAWVGDGVDNVVDDHEAGSEVGSVHDVDNFISRVHGNRHNGEAANSRR---- 236
Query: 679 VDVQSESKGHSLVSXXXXXXXXA----CMVLSSKESVKDTLNQGYNVKEEVAS---VDKW 837
V+V S G S V C++LS K+ V+ +++G KEE VD
Sbjct: 237 VNVNSVPMGQSSVCDFEEEEEDGNSDDCVILSGKKVVEAAVSRGSKFKEEYDDSDVVDVL 296
Query: 838 EDSIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDD 1017
+D V +DE +ITLSG TY LPGKIAKMLYPHQRDGL WLWSLHC+G GGILGDD
Sbjct: 297 DDCTDGSVLEDESAITLSGPRSTYKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDD 356
Query: 1018 MGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKA 1197
MGLGKTMQICGFLAGLFHS L++RA+VVAPKTLL+HWIKELS V LSEKTREY+GTC K
Sbjct: 357 MGLGKTMQICGFLAGLFHSCLLRRAVVVAPKTLLSHWIKELSAVGLSEKTREYYGTCTKT 416
Query: 1198 RQYELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNP 1377
RQYELQY+LQD G+LLTTYDIVRNN+KSL G FHD+R+ED TWDY+ILDEGH+IKNP
Sbjct: 417 RQYELQYVLQDKGVLLTTYDIVRNNSKSLCGGNYFHDKRSEDDFTWDYMILDEGHLIKNP 476
Query: 1378 STQRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
STQRAKSL+EIP HRI++SGTPIQNNLKELWALFSFC
Sbjct: 477 STQRAKSLMEIPCAHRIVVSGTPIQNNLKELWALFSFC 514
>ref|XP_006432134.1| hypothetical protein CICLE_v10000096mg [Citrus clementina]
gi|567879153|ref|XP_006432135.1| hypothetical protein
CICLE_v10000096mg [Citrus clementina]
gi|557534256|gb|ESR45374.1| hypothetical protein
CICLE_v10000096mg [Citrus clementina]
gi|557534257|gb|ESR45375.1| hypothetical protein
CICLE_v10000096mg [Citrus clementina]
Length = 1007
Score = 479 bits (1233), Expect = e-132
Identities = 281/527 (53%), Positives = 328/527 (62%), Gaps = 63/527 (11%)
Frame = +1
Query: 100 MAEKK--PMSLNERHQRLLEGFSSQ-NQSAKTS--------------------------- 189
MAEKK P SLN+ H RLL+ +S N+SA +S
Sbjct: 1 MAEKKSKPRSLNDSHYRLLQDLASPTNRSALSSFSEYEEKPSVAKHLASSKLNDNASVKR 60
Query: 190 ----------SNPPEEKPTKVKLHGRRRLCKISS--TDNDTGNQIGFDEPNFSGITDFDS 333
S EEKP KVK+ GRRRLCK+SS DN + DEPNFS ITDFDS
Sbjct: 61 LQFSDTTRFDSTLDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDS 120
Query: 334 PPV------KIRDILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEE--FP 489
P +IRDIL+DLS++LE LSI+K RV K ++P D + N + G + P
Sbjct: 121 PLQSKTGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLP 180
Query: 490 EYASADSSFSLTPDPLDSSS------VGASKPRAQNDGTQSESDV---DSFFDRVNDVNS 642
EYASA+SSFSLT D DSSS VG ++ +S+ D D RV++
Sbjct: 181 EYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVEGDEHLSRVHETKK 240
Query: 643 GEGKKKSPIIDIVDVQSESKGHSLVSXXXXXXXXA--CMVLSSKESVK--DTLNQGYNVK 810
++K V G S VS C+++S K V D + N
Sbjct: 241 HHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKS 300
Query: 811 EEVASVDKWEDSIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCR 990
V+ +D D V +DEGSITLSG TY LPGKI ML+PHQR+GL WLWSLHC+
Sbjct: 301 AHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQ 360
Query: 991 GTGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTR 1170
G GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL+HWIKEL+ V LS K R
Sbjct: 361 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIR 420
Query: 1171 EYFGTCVKARQYELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVIL 1350
EYFGTCVK RQYELQY+LQD G+LLTTYDIVRNN+KSL+G DE +D WDY+IL
Sbjct: 421 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 480
Query: 1351 DEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
DEGH+IKNPSTQRAKSLLEIPS HRIIISGTPIQNNLKELWALF+FC
Sbjct: 481 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 527
>ref|XP_006432133.1| hypothetical protein CICLE_v10000096mg [Citrus clementina]
gi|557534255|gb|ESR45373.1| hypothetical protein
CICLE_v10000096mg [Citrus clementina]
Length = 959
Score = 479 bits (1233), Expect = e-132
Identities = 281/527 (53%), Positives = 328/527 (62%), Gaps = 63/527 (11%)
Frame = +1
Query: 100 MAEKK--PMSLNERHQRLLEGFSSQ-NQSAKTS--------------------------- 189
MAEKK P SLN+ H RLL+ +S N+SA +S
Sbjct: 1 MAEKKSKPRSLNDSHYRLLQDLASPTNRSALSSFSEYEEKPSVAKHLASSKLNDNASVKR 60
Query: 190 ----------SNPPEEKPTKVKLHGRRRLCKISS--TDNDTGNQIGFDEPNFSGITDFDS 333
S EEKP KVK+ GRRRLCK+SS DN + DEPNFS ITDFDS
Sbjct: 61 LQFSDTTRFDSTLDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDS 120
Query: 334 PPV------KIRDILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEE--FP 489
P +IRDIL+DLS++LE LSI+K RV K ++P D + N + G + P
Sbjct: 121 PLQSKTGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLP 180
Query: 490 EYASADSSFSLTPDPLDSSS------VGASKPRAQNDGTQSESDV---DSFFDRVNDVNS 642
EYASA+SSFSLT D DSSS VG ++ +S+ D D RV++
Sbjct: 181 EYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVEGDEHLSRVHETKK 240
Query: 643 GEGKKKSPIIDIVDVQSESKGHSLVSXXXXXXXXA--CMVLSSKESVK--DTLNQGYNVK 810
++K V G S VS C+++S K V D + N
Sbjct: 241 HHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKS 300
Query: 811 EEVASVDKWEDSIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCR 990
V+ +D D V +DEGSITLSG TY LPGKI ML+PHQR+GL WLWSLHC+
Sbjct: 301 AHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQ 360
Query: 991 GTGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTR 1170
G GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL+HWIKEL+ V LS K R
Sbjct: 361 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIR 420
Query: 1171 EYFGTCVKARQYELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVIL 1350
EYFGTCVK RQYELQY+LQD G+LLTTYDIVRNN+KSL+G DE +D WDY+IL
Sbjct: 421 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 480
Query: 1351 DEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
DEGH+IKNPSTQRAKSLLEIPS HRIIISGTPIQNNLKELWALF+FC
Sbjct: 481 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 527
>ref|XP_006432136.1| hypothetical protein CICLE_v10000096mg [Citrus clementina]
gi|557534258|gb|ESR45376.1| hypothetical protein
CICLE_v10000096mg [Citrus clementina]
Length = 1107
Score = 451 bits (1160), Expect = e-124
Identities = 277/576 (48%), Positives = 330/576 (57%), Gaps = 112/576 (19%)
Frame = +1
Query: 100 MAEKK--PMSLNERHQRLLEGFSSQ-NQSAKTS--------------------------- 189
MAEKK P SLN+ H RLL+ +S N+SA +S
Sbjct: 1 MAEKKSKPRSLNDSHYRLLQDLASPTNRSALSSFSEYEEKPSVAKHLASSKLNDNASVKR 60
Query: 190 ----------SNPPEEKPTKVKLHGRRRLCKISS--TDNDTGNQIGFDEPNFSGITDFDS 333
S EEKP KVK+ GRRRLCK+SS DN + DEPNFS ITDFDS
Sbjct: 61 LQFSDTTRFDSTLDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDS 120
Query: 334 PPV------KIRDILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEE--FP 489
P +IRDIL+DLS++LE LSI+K RV K ++P D + N + G + P
Sbjct: 121 PLQSKTGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLP 180
Query: 490 EYASA-----------DSSFSLTPDPL------------------------DSSSVGA-- 558
EYASA DSS +T D + ++ +VG
Sbjct: 181 EYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGL 240
Query: 559 --SKPR-------------------AQNDGTQSESDVDSFFDRVNDVNSGEGKKKSPIID 675
++PR ++ G+ E + D RV++ ++K
Sbjct: 241 KRNEPRWVDNNLVSARESFESNLDGEEDGGSLGEVEGDEHLSRVHETKKHHQRQKKNEPK 300
Query: 676 IVDVQSESKGHSLVSXXXXXXXXA--CMVLSSKESVK--DTLNQGYNVKEEVASVDKWED 843
V G S VS C+++S K V D + N V+ +D
Sbjct: 301 RVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDD 360
Query: 844 SIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMG 1023
D V +DEGSITLSG TY LPGKI ML+PHQR+GL WLWSLHC+G GGILGDDMG
Sbjct: 361 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 420
Query: 1024 LGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQ 1203
LGKTMQICGFLAGLFHSRLIKRALVVAPKTLL+HWIKEL+ V LS K REYFGTCVK RQ
Sbjct: 421 LGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 480
Query: 1204 YELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPST 1383
YELQY+LQD G+LLTTYDIVRNN+KSL+G DE +D WDY+ILDEGH+IKNPST
Sbjct: 481 YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 540
Query: 1384 QRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
QRAKSLLEIPS HRIIISGTPIQNNLKELWALF+FC
Sbjct: 541 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 576
>ref|XP_007048407.1| Chromatin remodeling 24 [Theobroma cacao] gi|508700668|gb|EOX92564.1|
Chromatin remodeling 24 [Theobroma cacao]
Length = 1060
Score = 438 bits (1126), Expect = e-120
Identities = 278/552 (50%), Positives = 327/552 (59%), Gaps = 91/552 (16%)
Frame = +1
Query: 109 KKPMSLNERHQRLLEGFSSQ----------------------------NQSAKTSSNP-- 198
+KP+SLN+ H R L+ FS+ Q+ K S P
Sbjct: 10 RKPLSLNDSHYRFLQDFSAPPKPIPKPSSSKEEEESEEETFQVRRRLCKQTHKDDSIPHF 69
Query: 199 -----------PEEKPTKVKLHGRRRLCKISSTDN-DTGNQIGFDEPNFSGITDFDSP-P 339
E KP KVK+ GRRRLCKISS D+ D G +EPNFS I DFDSP P
Sbjct: 70 SGITDFDSPIEEEPKPAKVKVEGRRRLCKISSRDDGDAGKTSILNEPNFSEICDFDSPLP 129
Query: 340 VK--------IRDILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEEFPEY 495
+ IRDIL+DLSSKL+ LSIEK KA P ++ PEY
Sbjct: 130 TRHVSEGGSQIRDILNDLSSKLDLLSIEK----KAAPP----------------KKIPEY 169
Query: 496 ASADSSFSLTPDPLDSSSVGASKPRAQNDGTQS-----ESDVDSFFDRVNDV----NSGE 648
ASA+SSFS +PDP DSSS G + G Q E +VD FF++V+ N G
Sbjct: 170 ASAESSFSGSPDPSDSSS-GVIVTKNVGGGVQGVVDLCEDEVD-FFEKVHKTKDTHNVGL 227
Query: 649 GKKKSPIIDIVDVQSESKGHSLV------SXXXXXXXXACMVLSSKESVKD----TLNQG 798
KK+S +D V + S V S +V +E K+ ++
Sbjct: 228 MKKESNRVDEKLVSARQSFESNVEEEEEKSELQGDFGDGTLVTRVREPKKNFRRLKKSEH 287
Query: 799 YNVKEEVAS---------------------VDKWEDSIGDLVSKDEGSITLSGKSLTYTL 915
NV E + S VD+ ED D +S+ + LSG TY L
Sbjct: 288 KNVYERLQSLGRSFASKYEEEEDHDDQSEEVDELED---DTLSEGDQPFILSGPKSTYKL 344
Query: 916 PGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAGLFHSRLIKRAL 1095
P KIAKMLYPHQR+GL WLWSLHC+G GGILGDDMGLGKTMQICGFLAGLFHS+LIKRAL
Sbjct: 345 PTKIAKMLYPHQREGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSKLIKRAL 404
Query: 1096 VVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGILLTTYDIVRNNA 1275
+VAPKTLL+HWIKELSVV LS+KTREYF T K RQYELQYILQD G+LLTTYDIVRNN
Sbjct: 405 IVAPKTLLSHWIKELSVVGLSQKTREYFATSAKTRQYELQYILQDQGVLLTTYDIVRNNC 464
Query: 1276 KSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQN 1455
KSLKG+ +D+ +ED I WDY+ILDEGH+IKNPSTQRAKSLL IPS HRI+ISGTPIQN
Sbjct: 465 KSLKGESYCNDDDDEDGIIWDYMILDEGHLIKNPSTQRAKSLLAIPSGHRIVISGTPIQN 524
Query: 1456 NLKELWALFSFC 1491
NLKELWALF+FC
Sbjct: 525 NLKELWALFNFC 536
>ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
gi|223544553|gb|EEF46070.1| ATP binding protein, putative
[Ricinus communis]
Length = 1109
Score = 437 bits (1124), Expect = e-120
Identities = 277/580 (47%), Positives = 323/580 (55%), Gaps = 118/580 (20%)
Frame = +1
Query: 103 AEKKPMSLNERHQRLLEGFSSQNQSAKTSSNPPEE--KPTKVKLHGRRRLCKISSTDND- 273
+ +KP+SLN+ H RLL+ FS+ + +S + E KP+K+KL G RRLCK S+ D+D
Sbjct: 7 SHRKPVSLNDSHNRLLQEFSAPPKPEPSSFDEEGEEGKPSKIKLEGLRRLCKASAVDDDH 66
Query: 274 ------------------------------TGNQIGFDEPNFSGITDFDSP-PVK----- 345
G+ DEP+F+ ITDFDSP P K
Sbjct: 67 NIPRFFGVTDFDSSSGRRRLCKLSSRDKENAGSVTAVDEPSFADITDFDSPLPSKAMAGG 126
Query: 346 --------IRDILDDLSSKLEYLSIEKNR-VSKA-------------------------- 420
I DILDDLSS+L+ LSIEK R V KA
Sbjct: 127 KSNKDANEIMDILDDLSSRLDLLSIEKKRGVDKAPDGPSELLPGRDGEKKTDLPEYASAG 186
Query: 421 -----IEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTPDPLD--------------- 540
I SSDS ++N G E F + D S L+ D
Sbjct: 187 SSFSDIYDSSDSSSVLSNSIDGGPESFVD--KYDESQFLSKSRCDHFADNVHENNKNSRG 244
Query: 541 ------------------SSSVGASKPRAQNDGTQSESDVDSFFDRVNDVNSGEGKKKSP 666
+S V + +SES+ +S R + N G + K
Sbjct: 245 LNMENKYRGVDDKLVAVGNSFVSNIEEEEDETNLRSESECESRVTRERETNKGTHRLKDN 304
Query: 667 IIDIVDVQSESKGHSLVSXXXXXXXXA---CMVLSSKESVKDTLNQGYNVKEEV---ASV 828
V +S G S VS C+VLS K+ V++ G KE + +
Sbjct: 305 DSKRVHERSRVAGRSSVSILRNEEDDDEEDCLVLSRKKVVEEAGKLGGKNKEPCNLSSPI 364
Query: 829 DKWEDSIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGIL 1008
D +D D V D GSITLSG T+ LP KIA MLYPHQRDGL WLWSLHC G GGIL
Sbjct: 365 DLLDDDTDDSVLDDGGSITLSGPRSTFELPSKIATMLYPHQRDGLKWLWSLHCLGKGGIL 424
Query: 1009 GDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTC 1188
GDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKEL+ V LS KTREYFGT
Sbjct: 425 GDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELAAVGLSRKTREYFGTS 484
Query: 1189 VKARQYELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHII 1368
+KARQYELQYILQD GILLTTYDIVRNN+KSL+GD F DE +ED TWDY+ILDEGH+I
Sbjct: 485 LKARQYELQYILQDKGILLTTYDIVRNNSKSLRGDDYFADEESEDGYTWDYMILDEGHLI 544
Query: 1369 KNPSTQRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSF 1488
KNPSTQRAKSLLEIPS HRIIISGTPIQNNLKELW LF+F
Sbjct: 545 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWTLFNF 584
>gb|EXB36902.1| DNA excision repair protein ERCC-6-like protein [Morus notabilis]
Length = 1236
Score = 437 bits (1123), Expect = e-120
Identities = 259/506 (51%), Positives = 312/506 (61%), Gaps = 76/506 (15%)
Frame = +1
Query: 202 EEKPTKVKLHGRRRLCKISSTDNDTGNQ--IGFDEPNFSGITDFDSPPV----------- 342
+EK TKVK+ GRRRLCK+SS N + + DEP FS I DF+SPP
Sbjct: 163 QEKSTKVKIKGRRRLCKLSSQVNKESPEEILVPDEPTFSDIADFESPPPPHPRVVNDSDK 222
Query: 343 -----KIRDILDDLSSKLEYLSIEKNR-VSKAIEPSSDSPLAITNDEGGNNE--EFPEYA 498
+IRDIL+DL ++LE+LSIEK + ++K P+ N E + + PEYA
Sbjct: 223 NGGDNEIRDILNDLGARLEFLSIEKRKDINKTNTFEGSLPVFKYNKEIDEEKKVDLPEYA 282
Query: 499 SADSSFSLTPDPLDSSSVGASKPRAQNDGT------------QSESDVDSFFDRVNDVNS 642
SA+SSFSL D DSSS A ++ + + ES+V S D N V
Sbjct: 283 SAESSFSLASDASDSSSDAAKNDKSCTERVDCEYVKDRGLHYEHESEVSSKTDHSN-VGG 341
Query: 643 GEGKKKSPIIDIVDVQ----SESKGHSLVSXXXXXXXXA--------------------- 747
K S + + +V+ SE KG + V
Sbjct: 342 NFMPKHSFVSHVKEVEDSRHSEQKGGNHVGRKHVTAKHDEYKKSEFSRIDKKLVRLGKSS 401
Query: 748 --------------CMVLSSKESVKDTLNQGYNVKEEVASVDKWEDSIGDLVSKDEGSIT 885
C+VLS + K+ +G +KE + S GD + KD+ SIT
Sbjct: 402 TYQFGEREDSDEDDCVVLSGNKIAKEVGRKGKMLKER-------DVSNGDDIFKDDSSIT 454
Query: 886 LSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAGL 1065
L G + TY L G +AKMLYPHQRDGL WLWSLHC+G GGILGDDMGLGKTMQICGFLAGL
Sbjct: 455 LPGSNYTYNLHGDVAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 514
Query: 1066 FHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGILL 1245
FHSRLIKRAL+VAPKTLL+HWIKELSVV LS+KTREYFGTC K RQYELQY+LQD GILL
Sbjct: 515 FHSRLIKRALIVAPKTLLSHWIKELSVVGLSDKTREYFGTCAKTRQYELQYVLQDKGILL 574
Query: 1246 TTYDIVRNNAKSLKGDFDFH----DERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIP 1413
TTYDIVR N KSL+GD ++ D+ +ED++TWDY+ILDEGH+IKNPSTQRAKSLL IP
Sbjct: 575 TTYDIVRANTKSLQGDKRYNYFDDDDESEDNVTWDYMILDEGHLIKNPSTQRAKSLLVIP 634
Query: 1414 SVHRIIISGTPIQNNLKELWALFSFC 1491
S HRIIISGTPIQNNLKELWALF+FC
Sbjct: 635 SAHRIIISGTPIQNNLKELWALFNFC 660
>ref|XP_006465090.1| PREDICTED: DNA excision repair protein ERCC-6-like isoform X1 [Citrus
sinensis]
Length = 1181
Score = 432 bits (1110), Expect = e-118
Identities = 266/576 (46%), Positives = 319/576 (55%), Gaps = 114/576 (19%)
Frame = +1
Query: 106 EKKPMSLN-ERHQRLLEGFSSQNQSAKTSSNPPEEKPTKVKLHGRRRLCKISS--TDNDT 276
+KKP+ + E S + ++ S EEKP KVK+ GRRRLCK+SS DN
Sbjct: 75 DKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTE 134
Query: 277 GNQIGFDEPNFSGITDFDSP--------------------------------PVK----- 345
+ DEPNFS ITDFDSP P K
Sbjct: 135 NRAVVDDEPNFSDITDFDSPLQSKTVSTMVNIESRAVIDDGPKFSDITVFDSPPKAKTVS 194
Query: 346 ----------IRDILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEE--FP 489
IRDIL+DLS++LE LSI+K RV K ++P D + N + G + P
Sbjct: 195 ENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLP 254
Query: 490 EYASA-----------DSSFSLTPDPL------------------------DSSSVGA-- 558
EYASA DSS +T D + ++ +VG
Sbjct: 255 EYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGL 314
Query: 559 --SKPR-------------------AQNDGTQSESDVDSFFDRVNDVNSGEGKKKSPIID 675
++PR ++ G+ E + D RV++ ++K
Sbjct: 315 KRNEPRWVDNNLVSARESFESNLDGEEDGGSLGEVEGDEHLSRVHETKKHHQRQKKNEPK 374
Query: 676 IVDVQSESKGHSLVSXXXXXXXXA--CMVLSSKESVK--DTLNQGYNVKEEVASVDKWED 843
V G S VS C+++S K V D + N V+ +D
Sbjct: 375 RVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDD 434
Query: 844 SIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMG 1023
D V +DEGSITLSG TY LPGKI ML+PHQR+GL WLWSLHC+G GGILGDDMG
Sbjct: 435 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 494
Query: 1024 LGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQ 1203
LGKTMQICGFLAGLFHSRLIKRALVVAPKTLL+HWIKEL+ V LS K REYFGTCVK RQ
Sbjct: 495 LGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 554
Query: 1204 YELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPST 1383
YELQY+LQD G+LLTTYDIVRNN+KSL+G DE +D WDY+ILDEGH+IKNPST
Sbjct: 555 YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 614
Query: 1384 QRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
QRAKSLLEIPS HRIIISGTPIQNNLKELWALF+FC
Sbjct: 615 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 650
>ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus]
Length = 1016
Score = 429 bits (1102), Expect = e-117
Identities = 256/512 (50%), Positives = 318/512 (62%), Gaps = 49/512 (9%)
Frame = +1
Query: 103 AEKKPMSLNERHQRLLEGFSSQNQSAKTSSNPPEEKPTKVKLHGRRRLCKISSTDNDT-G 279
+ KKP+SLN+RH RLL+ S+ + + ++ EEKPTKVK++GRRRLCK+SS +ND
Sbjct: 7 SRKKPLSLNDRHYRLLQDLSAPPKPSLATA-AVEEKPTKVKINGRRRLCKLSSRENDCLD 65
Query: 280 NQIGF--DEPNFSGITDFDSP------PVK--------IRDILDDLSSKLEYLSIEKNRV 411
N GF + PNFSGITDFDSP PV+ IRDIL+DLS++LE LS+EK R
Sbjct: 66 NPEGFYFNAPNFSGITDFDSPSPPPPLPVENRVNKGSEIRDILNDLSARLELLSVEKRRE 125
Query: 412 SKAIEPSSDSPLAITNDEGGNNEEFPEYASADS-SFSLTP-DPLDSSSVGASKP-RAQND 582
S + A + +G + +S FS P + L SV K + N
Sbjct: 126 KPKKVDSIEDFSASSGGKGNEEANKADDREVESLKFSTKPSNSLLGESVKVEKAVKTLNV 185
Query: 583 GTQSESD---------VDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKGHS-------- 711
G E VD F + ++ V++ GK ++++ KG
Sbjct: 186 GGSGEYGEEILPNKVKVDVFDEGIHKVDTC-GKDSEQLLNLEHGNKHDKGRDKCRSQDVQ 244
Query: 712 -----------LVSXXXXXXXXACMVLSSK-ESVKDTLNQGYNVKEEVASVDKWEDSIGD 855
L+ C+VL+ + + Q +E+ D + S D
Sbjct: 245 KTYNSLGKSPVLIDEGEVEDEDDCVVLNHETRDFNEVRRQDGKYEEKDDGSDGLDKSCED 304
Query: 856 LVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKT 1035
+ + + S +G++ T+ L G+IA MLYPHQRDGL WLWSLHC G GGILGDDMGLGKT
Sbjct: 305 FILEGKSS---AGRNSTFKLQGRIATMLYPHQRDGLQWLWSLHCLGKGGILGDDMGLGKT 361
Query: 1036 MQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQ 1215
MQICGFLAGLF+SRLIKR LVVAPKTLL HWIKELSVV LSEKTREY+GT K RQYEL
Sbjct: 362 MQICGFLAGLFYSRLIKRVLVVAPKTLLPHWIKELSVVGLSEKTREYYGTSAKLRQYELN 421
Query: 1216 YILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAK 1395
YILQD G+LLTTYDIVRNN+KSL+G+ DE ED TWDY+ILDEGH+IKNPSTQRAK
Sbjct: 422 YILQDKGVLLTTYDIVRNNSKSLQGNCFSEDEETEDGTTWDYMILDEGHLIKNPSTQRAK 481
Query: 1396 SLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
SLL+IPS HRIIISGTP+QNNLKELWALF+FC
Sbjct: 482 SLLDIPSAHRIIISGTPLQNNLKELWALFNFC 513
>ref|XP_002306264.2| hypothetical protein POPTR_0005s06770g [Populus trichocarpa]
gi|550338279|gb|EEE93260.2| hypothetical protein
POPTR_0005s06770g [Populus trichocarpa]
Length = 1058
Score = 427 bits (1098), Expect = e-117
Identities = 277/558 (49%), Positives = 324/558 (58%), Gaps = 97/558 (17%)
Frame = +1
Query: 109 KKPMSLNERHQRLLEGFSS---QNQSAKTSSNPPEEKPT-KVKLHGRRRLCKISSTDNDT 276
KKP+SLN RH RLL+ S+ Q QSA S EE+ VKL GRRR CK + D+
Sbjct: 10 KKPVSLNHRHHRLLQDLSAPPKQPQSATPSEEDEEEESVFNVKLEGRRRFCKAEAEDDSI 69
Query: 277 GNQIG---FD----------------EPNFSGITDFDSP-PVK-------------IRDI 357
N G FD + +F GI DFDSP P K I+DI
Sbjct: 70 PNFCGITDFDSSPDNGDGESREEVKTDSSFDGIADFDSPIPSKNVGDCDNNRGVNEIKDI 129
Query: 358 LDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTPDPL 537
L+DL+S+L+ LSIEK R+ + N + EYASA+SSFS + P
Sbjct: 130 LNDLTSRLDLLSIEKRRMPE-------------NGNVVKKVDVVEYASAESSFSSSSGPS 176
Query: 538 DSSS-VGASKPRAQNDG-TQSESDVDSFFDRVNDVNSGEGKK-------------KSPII 672
DSSS V + A DG SES D + ND+ G K KS
Sbjct: 177 DSSSNVNKNFVEAYEDGHLLSESFADEVDSKGNDICKGLKKNEYGRVDEKLVPVGKSIAS 236
Query: 673 DIV----DVQSESKGHSLVSXXXXXXXXA------------------------------- 747
++V DVQ S V+ A
Sbjct: 237 NVVEEEGDVQIVSDRDDYVTRVEKTNKVALKVKKNEPTRFHEKLRSVGRSSLLSLRDEPE 296
Query: 748 -----CMVLSSKESVK-----DTLNQGYNVKEEVASVDKWEDSIGDLVSKDEGSITLSGK 897
C VL+SK+ VK D + + YN+ + +SV D+ D S+D+ ITL G
Sbjct: 297 DKGDDCEVLTSKKVVKKVGRPDAIAK-YNLLSDESSVTDVLDNHAD--SEDDSCITLPGP 353
Query: 898 SLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAGLFHSR 1077
TY L G IAKMLYPHQR+GL WLWSLHC+G GGILGDDMGLGKTMQIC FLAGLFHS+
Sbjct: 354 KSTYKLSGTIAKMLYPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICSFLAGLFHSK 413
Query: 1078 LIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGILLTTYD 1257
LIKRALVVAPKTLL+HWIKELSVV LS KTREYFGT +KAR YELQYILQD GILLTTYD
Sbjct: 414 LIKRALVVAPKTLLSHWIKELSVVGLSAKTREYFGTSLKARDYELQYILQDKGILLTTYD 473
Query: 1258 IVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPSVHRIIIS 1437
IVRNN+KSL+GD F D+ +EDS WDY+ILDEGH+IKNPSTQRAKSLLEIPS H I+IS
Sbjct: 474 IVRNNSKSLRGDHYFIDDESEDSYIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHCIVIS 533
Query: 1438 GTPIQNNLKELWALFSFC 1491
GTPIQNNLKELWALF+FC
Sbjct: 534 GTPIQNNLKELWALFNFC 551
>ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus]
Length = 565
Score = 426 bits (1096), Expect = e-116
Identities = 255/512 (49%), Positives = 317/512 (61%), Gaps = 49/512 (9%)
Frame = +1
Query: 103 AEKKPMSLNERHQRLLEGFSSQNQSAKTSSNPPEEKPTKVKLHGRRRLCKISSTDNDT-G 279
+ KKP+SLN+RH RLL+ S+ + + ++ EEKPTKVK++GRRRLCK+SS ++D
Sbjct: 7 SRKKPLSLNDRHYRLLQDLSAPPKPSLATA-AVEEKPTKVKINGRRRLCKLSSREDDCLD 65
Query: 280 NQIGF--DEPNFSGITDFDSP------PVK--------IRDILDDLSSKLEYLSIEKNRV 411
N GF + PNFSGITDFDSP PV+ IRDIL+DLS++LE LS+EK R
Sbjct: 66 NPEGFYFNAPNFSGITDFDSPSPPPPLPVENRVNKGSEIRDILNDLSARLELLSVEKRRE 125
Query: 412 SKAIEPSSDSPLAITNDEGGNNEEFPEYASADS-SFSLTP-DPLDSSSVGASKP-RAQND 582
S + A +G + +S FS P + L SV K + N
Sbjct: 126 KPKKVDSIEDFSASYGGKGNEEANKADDREVESLKFSTKPSNSLLGESVKVEKAVKTLNV 185
Query: 583 GTQSESD---------VDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKGHS-------- 711
G E VD F + ++ V++ GK ++++ KG
Sbjct: 186 GGSGEYGEEILPNKVKVDVFDEGIHKVDTC-GKDSEQLLNLEHGNKHDKGRDKCRSQDVQ 244
Query: 712 -----------LVSXXXXXXXXACMVLSSK-ESVKDTLNQGYNVKEEVASVDKWEDSIGD 855
L+ C+VL+ + + Q +E+ D + S D
Sbjct: 245 KTYNSLGKSPVLIDEGEVEDEDDCVVLNHETRDFNEVRRQDGKYEEKDGGSDGLDKSCED 304
Query: 856 LVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKT 1035
+ + + S +G++ T+ L G+IA MLYPHQRDGL WLWSLHC G GGILGDDMGLGKT
Sbjct: 305 FILEGKSS---AGRNSTFKLQGRIATMLYPHQRDGLQWLWSLHCLGKGGILGDDMGLGKT 361
Query: 1036 MQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQ 1215
MQICGFLAGLF+SRLIKR LVVAPKTLL HWIKELSVV LSEKTREY+GT K RQYEL
Sbjct: 362 MQICGFLAGLFYSRLIKRVLVVAPKTLLPHWIKELSVVGLSEKTREYYGTSAKLRQYELN 421
Query: 1216 YILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAK 1395
YILQD G+LLTTYDIVRNN+KSL+G+ DE ED TWDY+ILDEGH+IKNPSTQRAK
Sbjct: 422 YILQDKGVLLTTYDIVRNNSKSLQGNCFSEDEETEDGTTWDYMILDEGHLIKNPSTQRAK 481
Query: 1396 SLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
SLL+IPS HRIIISGTP+QNNLKELWALF+FC
Sbjct: 482 SLLDIPSAHRIIISGTPLQNNLKELWALFNFC 513
>ref|XP_002309928.1| hypothetical protein POPTR_0007s04450g [Populus trichocarpa]
gi|222852831|gb|EEE90378.1| hypothetical protein
POPTR_0007s04450g [Populus trichocarpa]
Length = 1108
Score = 426 bits (1094), Expect = e-116
Identities = 267/565 (47%), Positives = 314/565 (55%), Gaps = 104/565 (18%)
Frame = +1
Query: 109 KKPMSLNERHQRLLE----------------GFSSQNQSAKT------------------ 186
+KP+SLN+RH RLL+ F + +S
Sbjct: 10 RKPISLNDRHYRLLQDVSAPPKQPPPPPPVTSFEEEEESVFNVKFDGRRRICKAEPEDDN 69
Query: 187 ----------SSNPPEEKPTKVKLHGRRRLCKISSTDN--DTGNQIGFDEPNFSGITDFD 330
S+P EEKPTKV++ GRRRLCK+SS D+ D + D+ +F I DFD
Sbjct: 70 IPKFCGITDFDSSPEEEKPTKVRIEGRRRLCKVSSGDDGDDASREEVKDDSSFDDIADFD 129
Query: 331 SP-PVK-------------IRDILDDLSSKLEYLSIEKNRV------------------- 411
SP P K I+DIL DL+S+L+ LSIEK RV
Sbjct: 130 SPIPSKSVGDCGNNKGVNEIKDILSDLTSRLDLLSIEKKRVPENNNVVKKVHVVEYASAE 189
Query: 412 ---SKAIEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTPDPL------------DSS 546
S + PS S I N G + EY D D + D
Sbjct: 190 SLFSLSSSPSDSSLDVIKNGGGDDESAVDEYEEGDLLSESFDDEVSRGLKKNEYGRVDEK 249
Query: 547 SVGASKPRAQN-----DGTQSESDVDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKGHS 711
V KP N Q ES+ D + RV + + K D + + S G S
Sbjct: 250 LVPVGKPFVSNVVEDESDVQIESNHDEYVTRVEKTKNVTQRVKENEPDGFNERLRSVGRS 309
Query: 712 LV---SXXXXXXXXACMVLSSKESVKDTLNQGYNVKEEVASVDKWEDSI--GDLVSKDEG 876
V C+VL+ K+ VK G K V S + E ++ S+D+G
Sbjct: 310 SVLSLRDESEDDEDDCVVLTGKKVVKKVGRPGAIAKYNVLSGES-ETAVLENHAESEDDG 368
Query: 877 SITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFL 1056
SI L G TY LPGKIAKMLYPHQ +GL WLWSLHC+G GGILGDDMGLGKTMQIC FL
Sbjct: 369 SIILPGLKSTYKLPGKIAKMLYPHQCEGLRWLWSLHCKGKGGILGDDMGLGKTMQICSFL 428
Query: 1057 AGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTG 1236
AGLFHS+LIKR LVVAPKTLL HWIKELSVV LS KTREYFGT +KAR YELQYILQD G
Sbjct: 429 AGLFHSKLIKRVLVVAPKTLLTHWIKELSVVGLSGKTREYFGTSLKARDYELQYILQDKG 488
Query: 1237 ILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPS 1416
ILLTTYDIVRNN+KSL+GD F DE +EDS WDY+ILDEGH+IKNPSTQRAKSL+EIPS
Sbjct: 489 ILLTTYDIVRNNSKSLRGDHYFLDEESEDSYIWDYMILDEGHLIKNPSTQRAKSLIEIPS 548
Query: 1417 VHRIIISGTPIQNNLKELWALFSFC 1491
H I+ISGTPIQNNLKELWALF+FC
Sbjct: 549 AHCIVISGTPIQNNLKELWALFNFC 573
>ref|XP_006465091.1| PREDICTED: DNA excision repair protein ERCC-6-like isoform X2 [Citrus
sinensis]
Length = 1149
Score = 414 bits (1063), Expect = e-113
Identities = 253/544 (46%), Positives = 309/544 (56%), Gaps = 82/544 (15%)
Frame = +1
Query: 106 EKKPMSLN-ERHQRLLEGFSSQNQSAKTSSNPPEEKPTKVKLH---GRRRLCKISSTDND 273
+KKP+ + E S + ++ S EEKP KVK+ + +S+ N
Sbjct: 75 DKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEDFDSPLQSKTVSTMVNI 134
Query: 274 TGNQIGFDEPNFSGITDFDSPPV--------------KIRDILDDLSSKLEYLSIEKNRV 411
+ D P FS IT FDSPP +IRDIL+DLS++LE LSI+K RV
Sbjct: 135 ESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRV 194
Query: 412 SKAIEPSSDSPLAITNDEGGNNEE--FPEYASA-----------DSSFSLTPDPL----- 537
K ++P D + N + G + PEYASA DSS +T D +
Sbjct: 195 PKTVDPEDDFSRLVKNGDTGQGSKGNLPEYASAESSFSLTSDLSDSSSGVTKDNVGGVVE 254
Query: 538 -------------------DSSSVGA----SKPR-------------------AQNDGTQ 591
++ +VG ++PR ++ G+
Sbjct: 255 SVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSL 314
Query: 592 SESDVDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKGHSLVSXXXXXXXXA--CMVLSS 765
E + D RV++ ++K V G S VS C+++S
Sbjct: 315 GEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSG 374
Query: 766 KESVK--DTLNQGYNVKEEVASVDKWEDSIGDLVSKDEGSITLSGKSLTYTLPGKIAKML 939
K V D + N V+ +D D V +DEGSITLSG TY LPGKI ML
Sbjct: 375 KLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNML 434
Query: 940 YPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 1119
+PHQR+GL WLWSLHC+G GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL
Sbjct: 435 FPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 494
Query: 1120 AHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGILLTTYDIVRNNAKSLKGDFD 1299
+HWIKEL+ V LS K REYFGTCVK RQYELQY+LQD G+LLTTYDIVRNN+KSL+G
Sbjct: 495 SHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSF 554
Query: 1300 FHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQNNLKELWAL 1479
DE +D WDY+ILDEGH+IKNPSTQRAKSLLEIPS HRIIISGTPIQNNLKELWAL
Sbjct: 555 ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWAL 614
Query: 1480 FSFC 1491
F+FC
Sbjct: 615 FNFC 618
>ref|XP_004289286.1| PREDICTED: DNA excision repair protein ERCC-6-like [Fragaria vesca
subsp. vesca]
Length = 957
Score = 413 bits (1062), Expect = e-113
Identities = 247/490 (50%), Positives = 307/490 (62%), Gaps = 26/490 (5%)
Frame = +1
Query: 100 MAE-KKPMSLNERHQRLLEGFSSQNQSAKTSSNPPEEKPTKVKLHGRRRLCKISSTDNDT 276
MAE KKP SLN+ H RLL+ SS K S P K TKV++ G RRLCK+ +D
Sbjct: 1 MAETKKPQSLNDSHYRLLQDLSSP----KPSEQP---KVTKVRIEGARRLCKVRVASDDD 53
Query: 277 GNQIGFDEPNFSGITDFDSPPVK----------------IRDILDDLSSKLEYLSIEKNR 408
+ P+FS DF+SP + IR ILDDLSS+LE+LSIEK
Sbjct: 54 D-----EAPSFSPNVDFESPLPQPKRSEAERGGDGGGNEIRGILDDLSSRLEFLSIEKRG 108
Query: 409 VSKAIEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTPDPLDSSSVGASKPRAQ---- 576
K+ + EG E Y A SFS+ D L SS +KPR +
Sbjct: 109 AGKSKKV-----------EGSGFPEEDGYKDAAPSFSIASD-LSDSSAETTKPRRKGVVS 156
Query: 577 NDGTQSESDVDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKGHSLVSXXXXXXXXACMV 756
N G + E + +D +GEG D +D C+V
Sbjct: 157 NVGDEHEEKSEFRCKSESDDRNGEGD------DDID---------------------CVV 189
Query: 757 LSSKESVKDTLNQGYNVKE-----EVASVDKWEDSIGDLVSKDEGSITLSGKSLTYTLPG 921
+ +K++ K+ +G + K+ E + V+++ D + V+KD+GSIT+SG + TY LPG
Sbjct: 190 VRAKKTEKEARRRGGSYKDYYDCDEDSGVEEFRD---ECVAKDDGSITMSGLTYTYKLPG 246
Query: 922 KIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 1101
KIA ML+PHQR+GL WLW+LHC+G GGILGDDMGLGKTMQICG+LAGLFHS L KR +VV
Sbjct: 247 KIATMLFPHQREGLKWLWALHCQGKGGILGDDMGLGKTMQICGYLAGLFHSGLTKRVMVV 306
Query: 1102 APKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGILLTTYDIVRNNAKS 1281
APKTLL+HWIKEL+ V LS+K REY+GTC KAR+YELQY+LQD GILLTTYDIVR N KS
Sbjct: 307 APKTLLSHWIKELTAVGLSDKIREYYGTCPKARKYELQYVLQDKGILLTTYDIVRVNFKS 366
Query: 1282 LKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQNNL 1461
LKG D+ +ED I WDY+ILDEGH+IKNPSTQRAKSLL+IP HRII+SGTP+QNNL
Sbjct: 367 LKGSDYILDDGSEDLI-WDYMILDEGHLIKNPSTQRAKSLLDIPCSHRIIVSGTPLQNNL 425
Query: 1462 KELWALFSFC 1491
KELWALF+FC
Sbjct: 426 KELWALFNFC 435
>ref|XP_004229292.1| PREDICTED: uncharacterized protein LOC101245692 [Solanum
lycopersicum]
Length = 1214
Score = 412 bits (1058), Expect = e-112
Identities = 244/508 (48%), Positives = 305/508 (60%), Gaps = 31/508 (6%)
Frame = +1
Query: 61 TREEERGRSCFDLMAEKKPMSLNERHQRLLEGFSSQNQSAKTSSNPPEEKPTKVKLHGRR 240
T+E+ D + M +E + E + + +SN EEK TKVK+ GRR
Sbjct: 198 TKEDPLLSKIVDNSSSLSDMERSEHVRENCELSQEGQEDYEKTSNEGEEKITKVKIKGRR 257
Query: 241 RLCKISSTDNDTGNQIGFD--EPNFSGITDFDSPPVK---------------IRDILDDL 369
RLCKIS +ND+ D E GITDFDSPP + IRDIL+DL
Sbjct: 258 RLCKISEDNNDSEEMKLKDDEESGLLGITDFDSPPCQVKSAVQNEHGGSGNEIRDILNDL 317
Query: 370 SSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTP----DPL 537
SS+LE LSIEK R K P +T E PEY SA SSFSL+ D
Sbjct: 318 SSRLEILSIEKKRAPK--------PHDLTK-----KNEIPEYQSAGSSFSLSSGSSSDST 364
Query: 538 DSSSVGASKPRAQ----NDGTQSESDVDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKG 705
S +G P+ + GT S ++ + ND S G K + + +S+
Sbjct: 365 KESRIGGEIPKEYLKKIDSGTASNNNC--VVHKFNDTRSSVGAPKRKEVKQMTGKSQPMK 422
Query: 706 HSLVSXXXXXXXXA------CMVLSSKESVKDTLNQGYNVKEEVASVDKWEDSIGDLVSK 867
+++ + A C+V+ + +V + E D ++ D VS+
Sbjct: 423 NTISAYKFLEEGDANDSDDDCVVVGDESAVTQVGRHNRKTRHEHKHSDDFDSH--DFVSE 480
Query: 868 DEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQIC 1047
++ + TLSG Y LPGKI KMLYPHQR+GL WLWSLHC G GGILGDDMGLGKTMQIC
Sbjct: 481 EDHTYTLSGPKFNYGLPGKITKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQIC 540
Query: 1048 GFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQ 1227
G+LAGLF+S+LIKR L+VAPKTLL HWIKEL+ V LS+K REYF T K R YELQY+LQ
Sbjct: 541 GYLAGLFYSKLIKRVLIVAPKTLLPHWIKELTAVGLSQKIREYFATSAKLRNYELQYVLQ 600
Query: 1228 DTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLE 1407
D GILLTTYDIVR N KSL GD ++++R+E+ +TWDY+ILDEGH+IKNPSTQRAKSL E
Sbjct: 601 DKGILLTTYDIVRTNVKSLCGD-QYYEDRDEE-LTWDYMILDEGHLIKNPSTQRAKSLHE 658
Query: 1408 IPSVHRIIISGTPIQNNLKELWALFSFC 1491
IP HRIIISGTP+QN+LKELWALF+FC
Sbjct: 659 IPCAHRIIISGTPLQNHLKELWALFNFC 686
>ref|XP_006345475.1| PREDICTED: DNA excision repair protein ERCC-6-like [Solanum
tuberosum]
Length = 1209
Score = 411 bits (1056), Expect = e-112
Identities = 238/462 (51%), Positives = 289/462 (62%), Gaps = 27/462 (5%)
Frame = +1
Query: 187 SSNPPEEKPTKVKLHGRRRLCKISSTDNDTGNQIGFD--EPNFSGITDFDSPPVK----- 345
+SN EEK KVK+ GRRRLCKIS +ND+ D E ITDFDSPP +
Sbjct: 239 TSNEGEEKIMKVKIKGRRRLCKISEDNNDSEEMKLKDDEESRLLDITDFDSPPRQVKNAV 298
Query: 346 ----------IRDILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEEFPEY 495
IRDIL+DLSS+LE LSIEK R K P +T E PEY
Sbjct: 299 QNEHGGSGNEIRDILNDLSSRLEILSIEKKRAPK--------PHDLTK-----KNEIPEY 345
Query: 496 ASADSSFSLTP----DPLDSSSVGASKPRAQNDGTQSESDVDSFFDRVNDVNSGEGKKKS 663
SA SSFSL+ D S +G + + + S D + ND S G K
Sbjct: 346 QSAGSSFSLSSGSSSDSTKESRIGGEIHKVKEIDSGYASKNDCVVQKFNDTRSSVGAPKR 405
Query: 664 PIIDIVDVQSESKGHSLVSXXXXXXXXA------CMVLSSKESVKDTLNQGYNVKEEVAS 825
+ + +S+ +S+ + A C+V+ + V V+ E
Sbjct: 406 KEVKQMVGKSQPMKNSISAYKFLEEGDANDSDGDCVVVGDESVVTQVGRHNRKVRHERKR 465
Query: 826 VDKWEDSIGDLVSKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGI 1005
D ++ D VS+++ + TLSG Y LPGKIAKML+PHQR+GL WLWSLHC G GGI
Sbjct: 466 SDDFDSH--DFVSEEDHTYTLSGPKFNYGLPGKIAKMLFPHQREGLKWLWSLHCLGKGGI 523
Query: 1006 LGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGT 1185
LGDDMGLGKTMQICG+LAGLF+S+LIKR L+VAPKTLL HWIKEL+ V LS+K REYF T
Sbjct: 524 LGDDMGLGKTMQICGYLAGLFYSKLIKRVLIVAPKTLLPHWIKELTAVGLSQKIREYFAT 583
Query: 1186 CVKARQYELQYILQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHI 1365
K R YELQY+LQD GILLTTYDIVRNN KSL GD ++++R+E+ +TWDY+ILDEGH+
Sbjct: 584 SAKLRNYELQYVLQDKGILLTTYDIVRNNVKSLCGD-QYYEDRDEE-LTWDYMILDEGHL 641
Query: 1366 IKNPSTQRAKSLLEIPSVHRIIISGTPIQNNLKELWALFSFC 1491
IKNPSTQRAKSL EIP HRIIISGTP+QNNLKELWALF+FC
Sbjct: 642 IKNPSTQRAKSLHEIPCAHRIIISGTPLQNNLKELWALFNFC 683
>ref|XP_006279923.1| hypothetical protein CARUB_v10025781mg [Capsella rubella]
gi|482548627|gb|EOA12821.1| hypothetical protein
CARUB_v10025781mg [Capsella rubella]
Length = 1088
Score = 383 bits (983), Expect = e-103
Identities = 245/565 (43%), Positives = 313/565 (55%), Gaps = 105/565 (18%)
Frame = +1
Query: 109 KKPMSLNERHQRLLEGFSSQNQSAKTSSNPP--EEKPTKVKLHGRRRLCK------ISST 264
+KP SLN+RH +L S+ + +SS+ E K + +KL GRRRLCK +S
Sbjct: 12 RKPQSLNDRHYSILMDLSAPPKPPSSSSHGEVEETKKSMIKLAGRRRLCKALPKEDVSDG 71
Query: 265 DNDT--------------------GNQIGF------------DEPNFSGITDFDSPPVKI 348
D+D+ GN + DEPNFS ITDF SP ++
Sbjct: 72 DDDSDLVDFDSPVKGESSLESAGAGNILTSLDKSDEAKTEIADEPNFSIITDFASPSPQL 131
Query: 349 R---------------DILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEE 483
+ DILDDL+SKL +SI+K +V++ S+D D GG +
Sbjct: 132 KQKEEIQDAGGRNEIMDILDDLTSKLGTMSIQKKKVNQ----SNDF------DAGGIKSQ 181
Query: 484 FP--EYASADSSFSLTPDPLDSSSVGAS-----------------------KPRAQNDGT 588
++ A+SSFSL D SS + R N G
Sbjct: 182 VDNLDFEDAESSFSLISDLSKFSSDSLKDKQGNAGITIREQITSNEFSSEWEDRVSNVGK 241
Query: 589 QSESDVDSFFDRVNDVNSGE----GKKKSPIIDIVDVQSE-------------SKGHSLV 717
Q+ V F D+ D G GK K +D + + S L
Sbjct: 242 QNSFSVQHFDDKSEDNRQGYNLDLGKGKGKEVDQIPKTTRHIEVSEKLRTVGRSNADKLR 301
Query: 718 SXXXXXXXXACMVLSSKESVKDTLN--------QGYNVKEEVASVDKWEDSIGDLVSKDE 873
C++L+ K++V+ ++ Q +N+K + + + D+
Sbjct: 302 DLDEDDDDDDCVILTGKKAVEMKIHPEKPKKPAQSHNIKRHGSD---------ERLLDDK 352
Query: 874 GSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGF 1053
SITL+ L+YTLPGKIA MLYPHQR+GL WLWSLH + GGILGDDMGLGKTMQIC F
Sbjct: 353 ESITLTSLKLSYTLPGKIATMLYPHQREGLKWLWSLHTQEKGGILGDDMGLGKTMQICSF 412
Query: 1054 LAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDT 1233
LAGLFHS+LIKRALVVAPKTLL HW+KEL+ V LS TREY+GT KAR+Y+L ++LQ
Sbjct: 413 LAGLFHSKLIKRALVVAPKTLLPHWMKELATVGLSRMTREYYGTSTKAREYDLHHVLQGK 472
Query: 1234 GILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIP 1413
G+LLTTYDIVRNN K+L+GD + DE +ED I WDY+ILDEGH+IKNP+TQRAKSLLEIP
Sbjct: 473 GVLLTTYDIVRNNTKALQGDDHYTDEDDEDGIKWDYMILDEGHLIKNPNTQRAKSLLEIP 532
Query: 1414 SVHRIIISGTPIQNNLKELWALFSF 1488
S HRIIISGTPIQNNLKELWALF+F
Sbjct: 533 SSHRIIISGTPIQNNLKELWALFNF 557
>ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
lyrata] gi|297312419|gb|EFH42843.1| hypothetical protein
ARALYDRAFT_496587 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 382 bits (982), Expect = e-103
Identities = 248/569 (43%), Positives = 316/569 (55%), Gaps = 109/569 (19%)
Frame = +1
Query: 109 KKPMSLNERHQRLLEGFSSQNQSAKTSSN--PPEEKPTKVKLHGRRRLCK-ISSTDNDTG 279
+KP SLN+RH +L+ S+ + +SS+ E K + +KL GRRRLCK + D D G
Sbjct: 10 RKPQSLNDRHYSILQDLSAPPKQPPSSSHGEDDETKKSMIKLAGRRRLCKALPKEDVDDG 69
Query: 280 ----NQIGFD---------------------------------EPNFSGITDFDSPPVKI 348
+ + FD EPNFS ITDF SP ++
Sbjct: 70 YDDPDLVDFDSPVKGDTSVESAGAGNKFTSWDQSKEANTELAGEPNFSIITDFSSPSPQL 129
Query: 349 R---------------DILDDLSSKLEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEE 483
+ DILDDL+SKL +SI+K + ++ S+D D GG
Sbjct: 130 KQNEEMQGDGGRNEIMDILDDLTSKLGTMSIQKKKDNQ----SNDF------DGGGVKSR 179
Query: 484 FP--EYASADSSFSLTPDPLDSS---------SVGASKPRAQNDG--TQSESDVDSFF-- 618
++ A SSFSL D SS V + K + N G + E + F
Sbjct: 180 VDKFDFEDAKSSFSLISDLSQSSLDVGTTCSAGVNSLKDKQGNAGFAIREEKTSNEFSRE 239
Query: 619 --DRVNDV----------------------NSGEGKKKSPIIDIVDVQSESKGHSLVSXX 726
+R++DV N GK + + ++ H VS
Sbjct: 240 LEERISDVGKQNSYSGRHFDDNSEYNRQGYNLDRGKSQRKEEKTMGQSLKTTRHIEVSEK 299
Query: 727 XXXXXXA---------------CMVLSSKESVKDTLNQGYNVKEEVASVDKWEDSIGDLV 861
+ C++LS K++ + ++ K+ S + +
Sbjct: 300 LRTVGRSNAAKLRDLDKDDDDDCVILSGKKAAEMKIHHE-KPKKPARSYNTERHGYDERS 358
Query: 862 SKDEGSITLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQ 1041
+DEGSITL+G L+YTLPGKIA MLYPHQRDGL WLWSLH +G GGILGDDMGLGKTMQ
Sbjct: 359 LEDEGSITLTGLKLSYTLPGKIATMLYPHQRDGLKWLWSLHTQGKGGILGDDMGLGKTMQ 418
Query: 1042 ICGFLAGLFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYI 1221
IC FLAGLFHS+LIKRALVVAPKTLL HW+KEL+ V LS+ TREY+GT KAR+Y+L +I
Sbjct: 419 ICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVGLSKMTREYYGTSTKAREYDLHHI 478
Query: 1222 LQDTGILLTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSL 1401
LQ G+LLTTYDIVRNN K+L+GD + DE +ED I WDY+ILDEGH+IKNP+TQRAKSL
Sbjct: 479 LQGKGVLLTTYDIVRNNTKALQGDDHYTDEDDEDGIKWDYMILDEGHLIKNPNTQRAKSL 538
Query: 1402 LEIPSVHRIIISGTPIQNNLKELWALFSF 1488
LEIPS HRIIISGTPIQNNLKELWALF+F
Sbjct: 539 LEIPSSHRIIISGTPIQNNLKELWALFNF 567
>ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis thaliana]
gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5
[Arabidopsis thaliana] gi|22655364|gb|AAM98274.1|
At5g63950/MBM17_5 [Arabidopsis thaliana]
gi|332010436|gb|AED97819.1| protein chromatin remodeling
24 [Arabidopsis thaliana]
Length = 1090
Score = 381 bits (978), Expect = e-103
Identities = 240/562 (42%), Positives = 306/562 (54%), Gaps = 102/562 (18%)
Frame = +1
Query: 109 KKPMSLNERHQRLLEGFSSQNQSAKTSSNPPEEKPTK--VKLHGRRRLCKISSTDNDT-- 276
+KP SLN+RH +L+ S+ + +SS+ +E+ K +KL GRRRLCK +++
Sbjct: 10 RKPRSLNDRHYSILQDLSAPPRQPPSSSHGEDEETKKSMIKLAGRRRLCKALPKEDEADG 69
Query: 277 ------------------------GNQI-GFDE-----------PNFSGITDFDSPPVKI 348
GN+ +DE PNFS ITDF SP ++
Sbjct: 70 YDDPDLVDFYSPVKGETSLDSAGIGNKFTSWDESKEANTELAGEPNFSIITDFCSPSPQL 129
Query: 349 RD---------------ILDDLSSKLEYLSIEKNRVSKA--------------------- 420
+ ILDDL+SKL +SI+K + S++
Sbjct: 130 KQKEEMQGDGGRNEIMGILDDLTSKLGTMSIQKKKDSQSNDFDACGVKSQVDKFDFEDAK 189
Query: 421 ------IEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTPDPLDSSSVGASKPRAQND 582
+ S SP +T G N + S F++ + + R N
Sbjct: 190 SSFSLLSDLSKSSPDVVTTYNAGVNSIKDKQGK--SGFAIREEQTSKEFSREWEERISNV 247
Query: 583 GTQSESDVDSFFDRVNDVNSG----EGKKKSPIIDI-------------VDVQSESKGHS 711
G Q+ F D D G GK + +D + S
Sbjct: 248 GKQNSYSGRHFDDNSEDNRQGYNLDRGKSQCKEVDQSMKTTRHIEVSEKIRTVGRSNAAK 307
Query: 712 LVSXXXXXXXXACMVLSSKESVKDTLNQ---GYNVKEEVASVDKWEDSIGDLVSKDEGSI 882
L C++LS K++ + +N+ YN K + +DEGSI
Sbjct: 308 LRDLDEDDDDDDCLILSGKKAAEMKINKPARSYNAKRH---------GYDERSLEDEGSI 358
Query: 883 TLSGKSLTYTLPGKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAG 1062
TL+G +L+YTLPGKIA MLYPHQR+GLNWLWSLH +G GGILGDDMGLGKTMQIC FLAG
Sbjct: 359 TLTGLNLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAG 418
Query: 1063 LFHSRLIKRALVVAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGIL 1242
LFHS+LIKRALVVAPKTLL HW+KEL+ V LS+ TREY+GT KAR+Y+L +ILQ GIL
Sbjct: 419 LFHSKLIKRALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKGIL 478
Query: 1243 LTTYDIVRNNAKSLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPSVH 1422
LTTYDIVRNN K+L+GD + DE +ED WDY+ILDEGH+IKNP+TQRAKSLLEIPS H
Sbjct: 479 LTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSH 538
Query: 1423 RIIISGTPIQNNLKELWALFSF 1488
RIIISGTPIQNNLKELWALF+F
Sbjct: 539 RIIISGTPIQNNLKELWALFNF 560
>ref|XP_003630305.1| DNA excision repair protein ERCC-6-like protein [Medicago truncatula]
gi|355524327|gb|AET04781.1| DNA excision repair protein
ERCC-6-like protein [Medicago truncatula]
Length = 1129
Score = 379 bits (973), Expect = e-102
Identities = 222/431 (51%), Positives = 263/431 (61%), Gaps = 1/431 (0%)
Frame = +1
Query: 202 EEKPTKVKLHGRRRLCKISSTDNDTGNQIGFDEPNFSG-ITDFDSPPVKIRDILDDLSSK 378
EEK TKVK+ GRRRLCK + D + + DEP F G + DFDSP +++++
Sbjct: 200 EEKKTKVKVQGRRRLCK--AADKEASKSVADDEPTFDGDLVDFDSPIPVWKNVIE----- 252
Query: 379 LEYLSIEKNRVSKAIEPSSDSPLAITNDEGGNNEEFPEYASADSSFSLTPDPLDSSSVGA 558
IE++R I I N+ +E S T +
Sbjct: 253 -----IEESRGRNDIRD-------ILNELSSKFDEL--------SVEKTKPKTVTKPKTV 292
Query: 559 SKPRAQNDGTQSESDVDSFFDRVNDVNSGEGKKKSPIIDIVDVQSESKGHSLVSXXXXXX 738
+KP+ + ++ F D + S G SP D D+
Sbjct: 293 TKPKTVTKPVERGKEI--FEDEGLEFGSA-GSSFSPKQDPHDI----------------- 332
Query: 739 XXACMVLSSKESVKDTLNQGYNVKEEVASVDKWEDSIGDLVSKDEGSITLSGKSLTYTLP 918
SSK++ D+ Y + V +D +E +++GSITL+ TY L
Sbjct: 333 -------SSKDTKNDSGGLEYESDDSVQVLDHFEP-------ENDGSITLNDPRSTYKLQ 378
Query: 919 GKIAKMLYPHQRDGLNWLWSLHCRGTGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALV 1098
KIAKMLYPHQR+GL WLWSLH RG GGILGDDMGLGKTMQICGFLAGLFHSRLI+R LV
Sbjct: 379 PKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRVLV 438
Query: 1099 VAPKTLLAHWIKELSVVRLSEKTREYFGTCVKARQYELQYILQDTGILLTTYDIVRNNAK 1278
VAPKTLL HWIKELSVV LSEKT+EYFG C K R+YELQYILQD G+LLTTYDIVRNN K
Sbjct: 439 VAPKTLLPHWIKELSVVGLSEKTKEYFGACAKLREYELQYILQDKGVLLTTYDIVRNNTK 498
Query: 1279 SLKGDFDFHDERNEDSITWDYVILDEGHIIKNPSTQRAKSLLEIPSVHRIIISGTPIQNN 1458
SLKG F DE NED TWDY+ILDEGH+IKNPSTQRAKSLLEIPS HRIIISGTP+QNN
Sbjct: 499 SLKGHRYFDDEDNEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNN 558
Query: 1459 LKELWALFSFC 1491
LKELWALF+FC
Sbjct: 559 LKELWALFNFC 569