BLASTX nr result
ID: Akebia24_contig00002191
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00002191
(2206 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27412.3| unnamed protein product [Vitis vinifera] 1222 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1222 0.0
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1197 0.0
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 1191 0.0
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A... 1180 0.0
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 1179 0.0
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 1179 0.0
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa... 1176 0.0
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1173 0.0
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1173 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1169 0.0
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S... 1169 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1169 0.0
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 1167 0.0
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob... 1166 0.0
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1166 0.0
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 1163 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1163 0.0
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1162 0.0
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1162 0.0
>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 1222 bits (3163), Expect = 0.0
Identities = 596/734 (81%), Positives = 658/734 (89%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQ+ ++GKNR YA YFDHLPADMMAVITMHKLMGLL
Sbjct: 9 NLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLL 68
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362
MT + +G R+VQA+ IGEAIE EVRI F++K++ + N +GG S+ V KE+EKL
Sbjct: 69 MTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVTKEQEKL 127
Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542
RKKV+ L+KKQKLQQVR IVK QDD KPWGQDA KVG RLIELL+ETAYIQPP DQL D
Sbjct: 128 RKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGD 187
Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722
GPPDIRPAF H+LK V K+T K RR+GVIECDPLVR+GLEKTARH+VIPYMPMLVPP+N
Sbjct: 188 GPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLN 247
Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902
WT YDKGA+LFLPS VMR HG+R QREAIKRAPRK LE FEALNTLGNTKWR+NKRV G
Sbjct: 248 WTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLG 307
Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082
VI +IWA+GGRLADLVDREDVPLP +PDTEDEAEIR WKWKV+++KKENSERHS+RCD+E
Sbjct: 308 VIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIE 367
Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262
LKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLR
Sbjct: 368 LKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 427
Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442
WLKIH+AN+YAGGVDKLSY+GR+AFTENHL+DIFDSAD+PLEGRRWWL AEDPFQCL C
Sbjct: 428 WLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATC 487
Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622
INLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSG
Sbjct: 488 INLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSG 547
Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802
IAARVL+IM+ DA+KDP T P+AL ARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR
Sbjct: 548 IAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 607
Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982
RLKER AI D+ ++F AS YAAK TLTAL EMF+AAR IMSWLGDCAKVIASEN V+W
Sbjct: 608 RLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWN 667
Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162
TPLGLPVVQPYR LG HLIKTSLQ+L+L+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT
Sbjct: 668 TPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 727
Query: 2163 AIACKKAGLNFAGV 2204
A+AC+KAGLNFAGV
Sbjct: 728 AVACQKAGLNFAGV 741
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1222 bits (3163), Expect = 0.0
Identities = 596/734 (81%), Positives = 658/734 (89%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQ+ ++GKNR YA YFDHLPADMMAVITMHKLMGLL
Sbjct: 177 NLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLL 236
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362
MT + +G R+VQA+ IGEAIE EVRI F++K++ + N +GG S+ V KE+EKL
Sbjct: 237 MTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVTKEQEKL 295
Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542
RKKV+ L+KKQKLQQVR IVK QDD KPWGQDA KVG RLIELL+ETAYIQPP DQL D
Sbjct: 296 RKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGD 355
Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722
GPPDIRPAF H+LK V K+T K RR+GVIECDPLVR+GLEKTARH+VIPYMPMLVPP+N
Sbjct: 356 GPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLN 415
Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902
WT YDKGA+LFLPS VMR HG+R QREAIKRAPRK LE FEALNTLGNTKWR+NKRV G
Sbjct: 416 WTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLG 475
Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082
VI +IWA+GGRLADLVDREDVPLP +PDTEDEAEIR WKWKV+++KKENSERHS+RCD+E
Sbjct: 476 VIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIE 535
Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262
LKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLR
Sbjct: 536 LKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 595
Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442
WLKIH+AN+YAGGVDKLSY+GR+AFTENHL+DIFDSAD+PLEGRRWWL AEDPFQCL C
Sbjct: 596 WLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATC 655
Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622
INLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSG
Sbjct: 656 INLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSG 715
Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802
IAARVL+IM+ DA+KDP T P+AL ARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR
Sbjct: 716 IAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 775
Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982
RLKER AI D+ ++F AS YAAK TLTAL EMF+AAR IMSWLGDCAKVIASEN V+W
Sbjct: 776 RLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWN 835
Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162
TPLGLPVVQPYR LG HLIKTSLQ+L+L+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT
Sbjct: 836 TPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 895
Query: 2163 AIACKKAGLNFAGV 2204
A+AC+KAGLNFAGV
Sbjct: 896 AVACQKAGLNFAGV 909
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1197 bits (3097), Expect = 0.0
Identities = 585/736 (79%), Positives = 651/736 (88%), Gaps = 2/736 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPYMKSLFLGWF P RD+I EQE R GKN+ YA YFD LPADMM+VITMHKL+GLL
Sbjct: 231 NLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLL 290
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKS-RSNTNKDNKNEGGESDAVAKEKEK 359
MT +HG R+VQA+ IG+AIEQEVRI+NFL+K+ R KD EGG D V E+EK
Sbjct: 291 MTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEK 350
Query: 360 LRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVD-QL 536
LRKKVTNL+KKQKL R IVKG D+ KPWG +A+AKVG RLIELLM+TAYIQPPVD QL
Sbjct: 351 LRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQL 410
Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716
AD PPDIRPAF H+ K V ++ K RRFGVIECDPLV++GLE+TARH+VIPY+PMLVPP
Sbjct: 411 ADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPP 470
Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896
+ WT YDKGAHLFLPS VMRTHG+R QREA+KRAPR QLE VFEALNTLGNTKWR+NKR+
Sbjct: 471 LKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRL 530
Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076
F V+ +IWA GG LADLVDR DVPLP +PDTEDEA++R WKWKVK++KK NSERHS+RCD
Sbjct: 531 FDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCD 590
Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256
+ELKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SG
Sbjct: 591 IELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSG 650
Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436
L WLKIH+ANL+AGGVDKLS++GRI FTENHLDDIFDSAD+PLEG+RWWL AEDPFQ L
Sbjct: 651 LHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLA 710
Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616
ACINLS+ALRSSSPETTISH+P+HQDGSCNGLQHYAALGRD+LGA AVNLVAG+KPADVY
Sbjct: 711 ACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVY 770
Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796
SGIAARVL+IM+ DAEKDP +PDAL AR+LI+QVDRKLVKQTVMTSVYGVTYIGARDQI
Sbjct: 771 SGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQI 830
Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976
KRRLKER AI DD +LF A+ YAAKITLTAL EMFQAAR IMSWLGDCAK+IASENQ V+
Sbjct: 831 KRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVR 890
Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156
WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RET+ +MV+RQ+TAFPPNFVHSLDGSHMM
Sbjct: 891 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMM 950
Query: 2157 MTAIACKKAGLNFAGV 2204
MTAIACKKAGLNFAGV
Sbjct: 951 MTAIACKKAGLNFAGV 966
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1191 bits (3082), Expect = 0.0
Identities = 578/749 (77%), Positives = 660/749 (88%), Gaps = 15/749 (2%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD+I +Q+ ++ +R ++A YFDHLPAD MAVITMHKLMGLL
Sbjct: 189 NLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVITMHKLMGLL 248
Query: 183 MTSDDH-GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK-DNKNEGG---------- 326
MT++ G VR+VQA+ IGEAIE EVRI+ FL+K++ N D K E
Sbjct: 249 MTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEK 308
Query: 327 ---ESDAVAKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELL 497
E + + KE+E+LRKKV L+K+QK+QQVR IVK Q+DLKPWGQ+A KVGCRLI+LL
Sbjct: 309 LADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLL 368
Query: 498 METAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTAR 677
M+TAYIQPPVDQ+ DGPPDIRPAF H+LK +T+DT KT+RR+GVIECDP+VR+G+EKTAR
Sbjct: 369 MDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTAR 428
Query: 678 HVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALN 857
H+V+PYMPMLVPPINWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE VFEAL+
Sbjct: 429 HMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALD 488
Query: 858 TLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTL 1037
TLG+TKWRVNKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDEAEIR WKWK+K
Sbjct: 489 TLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAA 548
Query: 1038 KKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGI 1217
KKENSERHS+RCD+ELKLA + KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGI
Sbjct: 549 KKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDMCRGI 608
Query: 1218 LEFAEGRPLGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRR 1397
LEF+EGR LGKSGLRWLKIH+ANLYAGGVDKLS+D R AFTENH+D+IFDSAD+PLEGRR
Sbjct: 609 LEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDSADRPLEGRR 668
Query: 1398 WWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAA 1577
WWLGAEDPFQCL ACINL +ALRS SPETTIS+MP+HQDGSCNGLQHYAALGRDKLGAAA
Sbjct: 669 WWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAA 728
Query: 1578 VNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTS 1757
VNLV GDKPADVYSGIAARVL+IMR DAEKDP T P+ALHARLLI+QVDRKLVKQTVMTS
Sbjct: 729 VNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRKLVKQTVMTS 788
Query: 1758 VYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGD 1937
VYGVTY+GARDQIKRRLKERG+I DD+ LF A+ YAA+ TLTAL EMF+AAR IMSWLG+
Sbjct: 789 VYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAARSIMSWLGE 848
Query: 1938 CAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFP 2117
CAKVIASENQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFP
Sbjct: 849 CAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFP 908
Query: 2118 PNFVHSLDGSHMMMTAIACKKAGLNFAGV 2204
PNFVHSLDGSHMMMTA+ACKKAGLNFAGV
Sbjct: 909 PNFVHSLDGSHMMMTAVACKKAGLNFAGV 937
>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
gi|548846502|gb|ERN05778.1| hypothetical protein
AMTR_s00006p00254180 [Amborella trichopoda]
Length = 1006
Score = 1180 bits (3052), Expect = 0.0
Identities = 572/734 (77%), Positives = 640/734 (87%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPYMKSLFLGWF P RD I EQ ++ GKN+G YA YF LPADMM+VITMHKLMGLL
Sbjct: 204 NLPYMKSLFLGWFEPLRDIIASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLL 263
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362
MT D+G RLVQA+ +IGEAIEQEV+I+ F +K++ ++K+ K +G E + KEKE L
Sbjct: 264 MTGTDNGSTRLVQAACQIGEAIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESL 323
Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542
RK+VTNL+KKQKL QVR IVKGQDD KPWG D AKVG RLIELL+ETAY+QPPVDQ A+
Sbjct: 324 RKRVTNLMKKQKLHQVRKIVKGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAE 383
Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722
GPPDIRPAFRH LK VTK+ K RR+GVIECDPL+ +GLEKTARH+VIPYMPMLVPP+
Sbjct: 384 GPPDIRPAFRHILKTVTKNDQKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVK 443
Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902
WT YD+G HLFLPS VMR HG+R QR AIK APRKQL V+EAL+TLG TKWRVNKRV G
Sbjct: 444 WTGYDRGGHLFLPSYVMRIHGARQQRYAIKHAPRKQLLKVYEALDTLGTTKWRVNKRVLG 503
Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082
VI +IWA GGRLADLVDREDV +P +PDTEDEA+IR WKW VK +K+NSE HS+RCD E
Sbjct: 504 VIDRIWADGGRLADLVDREDVAIPEKPDTEDEAKIREWKWLVKGARKKNSELHSQRCDTE 563
Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262
LKL VA +MKDE+GF YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLR
Sbjct: 564 LKLNVARRMKDEEGFHYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 623
Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442
WLKIH+ANLYAGGVDKLSYDGR+ F ENHL+DIFDSAD+PLEG RWWLGAEDPFQCL AC
Sbjct: 624 WLKIHLANLYAGGVDKLSYDGRLEFVENHLEDIFDSADRPLEGGRWWLGAEDPFQCLAAC 683
Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622
+NLS+ALRSSSP+TTISHMP+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSG
Sbjct: 684 VNLSEALRSSSPDTTISHMPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSG 743
Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802
IA RVL+IMR D++KDP + P+ A+LL++QVDRKLVKQTVMTSVYGVTY+GARDQI R
Sbjct: 744 IAERVLDIMRRDSQKDPTSDPNVARAKLLLNQVDRKLVKQTVMTSVYGVTYVGARDQIMR 803
Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982
RLKERGAI D+ +LF AS Y AK+TLTAL EMFQAAR IMSWLGDCAKVIASEN+ V+WT
Sbjct: 804 RLKERGAITDEKELFSASCYTAKVTLTALGEMFQAARSIMSWLGDCAKVIASENETVRWT 863
Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162
TPLGLPVVQPYR LG HLIKTSLQ+L LR ETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT
Sbjct: 864 TPLGLPVVQPYRKLGRHLIKTSLQVLALRCETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 923
Query: 2163 AIACKKAGLNFAGV 2204
AIACKKAGLNFAGV
Sbjct: 924 AIACKKAGLNFAGV 937
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 1179 bits (3050), Expect = 0.0
Identities = 565/736 (76%), Positives = 655/736 (88%), Gaps = 2/736 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQE R ++ARYF+ LPADMMAVITMHKLMGLL
Sbjct: 214 NLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLL 273
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356
MT G VR++QA+ +IGEAIE EVRI+ FL+K++ +NK DN+ EGG+SD +AKE+E
Sbjct: 274 MTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQE 332
Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536
+LRKKVT+L+KKQK++QVR+IVK QD+ KPWGQDA AKVG RLIEL++ETAYIQPP Q
Sbjct: 333 RLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS 392
Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716
ADGPPDIRPAF H ++ V ++ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP
Sbjct: 393 ADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 452
Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896
I+WT YDKGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEALNTLG+TKWRVNKRV
Sbjct: 453 ISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRV 512
Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076
++ +IW++GGRLADLVDR DV LP +PDTEDE +++ W+W ++ KKENSERHS+RCD
Sbjct: 513 LSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCD 572
Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256
VELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG
Sbjct: 573 VELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 632
Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436
LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL
Sbjct: 633 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 692
Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616
CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY
Sbjct: 693 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 752
Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796
+GIA RV+EIM+ DA KDP T PDA ARLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QI
Sbjct: 753 TGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQI 812
Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976
KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V+
Sbjct: 813 KRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVR 872
Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156
WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM
Sbjct: 873 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 932
Query: 2157 MTAIACKKAGLNFAGV 2204
MTA+ACK+ GLNFAGV
Sbjct: 933 MTAVACKRQGLNFAGV 948
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 1179 bits (3050), Expect = 0.0
Identities = 565/736 (76%), Positives = 655/736 (88%), Gaps = 2/736 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQE R ++ARYF+ LPADMMAVITMHKLMGLL
Sbjct: 180 NLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLL 239
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356
MT G VR++QA+ +IGEAIE EVRI+ FL+K++ +NK DN+ EGG+SD +AKE+E
Sbjct: 240 MTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQE 298
Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536
+LRKKVT+L+KKQK++QVR+IVK QD+ KPWGQDA AKVG RLIEL++ETAYIQPP Q
Sbjct: 299 RLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS 358
Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716
ADGPPDIRPAF H ++ V ++ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP
Sbjct: 359 ADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 418
Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896
I+WT YDKGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEALNTLG+TKWRVNKRV
Sbjct: 419 ISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRV 478
Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076
++ +IW++GGRLADLVDR DV LP +PDTEDE +++ W+W ++ KKENSERHS+RCD
Sbjct: 479 LSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCD 538
Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256
VELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG
Sbjct: 539 VELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 598
Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436
LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL
Sbjct: 599 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 658
Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616
CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY
Sbjct: 659 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 718
Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796
+GIA RV+EIM+ DA KDP T PDA ARLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QI
Sbjct: 719 TGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQI 778
Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976
KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V+
Sbjct: 779 KRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVR 838
Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156
WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM
Sbjct: 839 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 898
Query: 2157 MTAIACKKAGLNFAGV 2204
MTA+ACK+ GLNFAGV
Sbjct: 899 MTAVACKRQGLNFAGV 914
>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA
polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 951
Score = 1176 bits (3041), Expect = 0.0
Identities = 564/736 (76%), Positives = 654/736 (88%), Gaps = 2/736 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQE R ++ARYF+ LPADMMAVITMHKLMGLL
Sbjct: 214 NLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLL 273
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356
MT G VR++QA+ +IGEAIE EVRI+ FL+K++ +NK DN+ EGG+SD +AKE+E
Sbjct: 274 MTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQE 332
Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536
+LRKKVT+L+KKQK++QVR+IVK QD+ KPWGQDA AKVG RLIEL++ETAYIQPP Q
Sbjct: 333 RLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS 392
Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716
ADGPPDIRPAF H ++ V ++ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP
Sbjct: 393 ADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 452
Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896
I+WT YDKGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEALNTLG+TKWRVNKRV
Sbjct: 453 ISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRV 512
Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076
++ +IW++GGRLADLVDR DV LP +PDTEDE +++ W+W ++ KKENSERHS+RCD
Sbjct: 513 LSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCD 572
Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256
VELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG
Sbjct: 573 VELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 632
Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436
LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL
Sbjct: 633 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 692
Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616
CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY
Sbjct: 693 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 752
Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796
+GIA RV+EIM+ DA KDP T PDA ARLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QI
Sbjct: 753 TGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQI 812
Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976
KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V+
Sbjct: 813 KRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVR 872
Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156
WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM
Sbjct: 873 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 932
Query: 2157 MTAIACKKAGLNFAGV 2204
MTA+ACK+ GLNFA V
Sbjct: 933 MTAVACKRQGLNFAVV 948
>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
X2 [Oryza brachyantha]
Length = 839
Score = 1173 bits (3035), Expect = 0.0
Identities = 563/736 (76%), Positives = 651/736 (88%), Gaps = 2/736 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQ+ + R ++ARYF+ LPADMMAVITMHKLMGLL
Sbjct: 36 NLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARYFNMLPADMMAVITMHKLMGLL 95
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356
MT G VR++QA+ +IGEAIE EVR++ FL+K + +K DN+ E G SD +AKE+E
Sbjct: 96 MTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSD-IAKEQE 154
Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536
+LRKKVT+L+KK KL+QVR+IVK QD+ KPWGQD AKVG RLIEL++ETAYIQPP Q
Sbjct: 155 RLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQS 214
Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716
ADGPPDIRPAF H ++ V K+ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP
Sbjct: 215 ADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 274
Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896
I+WT YDKGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEAL+TLG+TKWRVNKRV
Sbjct: 275 ISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRV 334
Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076
++ +IW++GGRLADLVDR DV LP +PDTEDEA+++ W+W +K KKENSERHS+RCD
Sbjct: 335 LSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNLKAAKKENSERHSQRCD 394
Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256
VELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG
Sbjct: 395 VELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 454
Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436
LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL
Sbjct: 455 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 514
Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616
CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY
Sbjct: 515 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 574
Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796
+GIA RVLEIMR DA KDP T PDA AR+L+ QVDRKLVKQTVMTSVYGVTY+GAR+QI
Sbjct: 575 TGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQTVMTSVYGVTYVGAREQI 634
Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976
KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAK+IA EN+ V+
Sbjct: 635 KRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKIIACENEPVK 694
Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156
WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM
Sbjct: 695 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 754
Query: 2157 MTAIACKKAGLNFAGV 2204
MTA+ACK+ GLNFAGV
Sbjct: 755 MTAVACKRQGLNFAGV 770
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 1173 bits (3035), Expect = 0.0
Identities = 569/734 (77%), Positives = 648/734 (88%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD+I EQ+ GKNRG YA +FD LPA+MMAVITMHKLMGLL
Sbjct: 195 NLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLL 254
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362
MT G R+VQA+ IGEAIE E RI+ FL+K++ N + E + + KE+E+L
Sbjct: 255 MTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE--TAGDIMKERERL 312
Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542
RKKV L+KKQKLQQVR IVK QDD KPWGQD KVGC+LI++L+ETAYIQPP DQL D
Sbjct: 313 RKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDD 372
Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722
PPDIRPAF H+LK V +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP N
Sbjct: 373 CPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQN 430
Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902
W+ YD+GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+AL+TLGNTKWRVNKRV G
Sbjct: 431 WSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLG 490
Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082
++ +IWA+GGRLADLVDREDVPLP +PDTEDE EI+ WKWKVK KKEN ERHS+RCD+E
Sbjct: 491 ILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKENCERHSQRCDIE 550
Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262
LKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+EGRPLGKSGLR
Sbjct: 551 LKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLR 610
Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442
WLKIH+AN+Y GGVDKLSY+GR AF+ENH++DIFDSAD+PLEGRRWWLGAEDPFQCL C
Sbjct: 611 WLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATC 670
Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622
IN+S+ALRS SPET+ISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG
Sbjct: 671 INISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 730
Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802
IAARVL+IM+ DA+KDP T P+ + ARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKR
Sbjct: 731 IAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKR 790
Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982
RLKERGAIEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA ENQ V+WT
Sbjct: 791 RLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWT 850
Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162
TPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT
Sbjct: 851 TPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 910
Query: 2163 AIACKKAGLNFAGV 2204
AI CK+AGL+FAGV
Sbjct: 911 AITCKEAGLSFAGV 924
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 1169 bits (3024), Expect = 0.0
Identities = 568/734 (77%), Positives = 648/734 (88%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P +D+I EQ+ GKNRG YA +FD LPA+MMAVITMHKLMGLL
Sbjct: 195 NLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLL 254
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362
MT G R+VQA+ IGEAIE E RI+ FL+K++ N + E + + KE+E+L
Sbjct: 255 MTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE--TAGDIMKERERL 312
Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542
RKKV L+KKQKLQQVR IVK QDD KPWGQD KVGCRLI++L+ETAYIQPP DQL D
Sbjct: 313 RKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLED 372
Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722
PPDIRPAF H+LK V DT+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP N
Sbjct: 373 CPPDIRPAFMHTLKTV--DTVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQN 430
Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902
W+ YD+GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+AL+TLGNTKWRVNKRV G
Sbjct: 431 WSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLG 490
Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082
++ +IWA+GGRLADLVDREDVPLP +PDTE+E EI+ WKWKVK KKEN ERHS+RCD+E
Sbjct: 491 ILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKWKWKVKAAKKENCERHSQRCDIE 550
Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262
LKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+EGRPLGKSGLR
Sbjct: 551 LKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLR 610
Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442
WLKIH+AN+Y GGVDKLS +GR AF+ENH++DIFDSAD+PLEGRRWWLGAEDPFQCL C
Sbjct: 611 WLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATC 670
Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622
I++S+ALRS SPET+ISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG
Sbjct: 671 ISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 730
Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802
IAARVL+IM+ DA+KDP T P+ + ARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKR
Sbjct: 731 IAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKR 790
Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982
RLKERGAIEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA ENQ V+WT
Sbjct: 791 RLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWT 850
Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162
TPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT
Sbjct: 851 TPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 910
Query: 2163 AIACKKAGLNFAGV 2204
AIACK+AGL+FAGV
Sbjct: 911 AIACKEAGLSFAGV 924
>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein
SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 1169 bits (3024), Expect = 0.0
Identities = 560/737 (75%), Positives = 654/737 (88%), Gaps = 3/737 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQE +R ++ YF+ LPADMMAVITMHKLMGLL
Sbjct: 172 NLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLL 231
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNE---GGESDAVAKEK 353
MT G VR++QA+ +IGEAIE EVRI FL+K+R +NK+ + E G++D +AKE+
Sbjct: 232 MTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTD-IAKEQ 290
Query: 354 EKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQ 533
++LRKKVT+L+KKQKL+QVR+IVK QD+ +PWGQD QAKVG RLIEL M+TA+IQPP Q
Sbjct: 291 QRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQ 350
Query: 534 LADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVP 713
+DG PDIRPAFRH ++ V K+ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+P
Sbjct: 351 SSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIP 410
Query: 714 PINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKR 893
PI WT YDKGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEALNTLG+TKWRVNKR
Sbjct: 411 PICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKR 470
Query: 894 VFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRC 1073
V ++ +IW++GGRLADLVDR DVPLP +PDTEDE I++WKW ++++KKENSERHS+RC
Sbjct: 471 VLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRC 530
Query: 1074 DVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKS 1253
DVELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKS
Sbjct: 531 DVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKS 590
Query: 1254 GLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCL 1433
GL WLKIH+ANLYAGGVDKLSYDGR+AFTENHL++IFDSAD+PLEG+RWWLGAEDPFQCL
Sbjct: 591 GLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCL 650
Query: 1434 VACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADV 1613
C+NL++ALRSSSPETTISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADV
Sbjct: 651 AVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADV 710
Query: 1614 YSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQ 1793
Y+GIA RVLEIMR+DA+KDP PD ARL++ QVDRKLVKQTVMTSVYGVTY+GARDQ
Sbjct: 711 YTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQ 770
Query: 1794 IKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLV 1973
IKRRLKERG I D+++LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V
Sbjct: 771 IKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPV 830
Query: 1974 QWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHM 2153
+WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHM
Sbjct: 831 RWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHM 890
Query: 2154 MMTAIACKKAGLNFAGV 2204
MMTA+ACK+ GLNFAGV
Sbjct: 891 MMTAVACKRQGLNFAGV 907
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 1169 bits (3024), Expect = 0.0
Identities = 571/743 (76%), Positives = 646/743 (86%), Gaps = 9/743 (1%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD+I EQE R N+ ++ YFD LPADMMAVITMHKLMGLL
Sbjct: 186 NLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLL 245
Query: 183 MTSDD-HGMVRLVQASLEIGEAIEQEVRIYNFL------KKSRSNTNKDNKNEGGESDA- 338
MT++ +G VR+VQA+ +GEAIE E RI+ FL KKS N + K E SDA
Sbjct: 246 MTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAE 305
Query: 339 -VAKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYI 515
+AKE+EKLRKKVT L+KKQK+QQVR + KG DD PWGQ+AQ KVGCRLI+LL+ETAYI
Sbjct: 306 KLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYI 365
Query: 516 QPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPY 695
QPPV+QL DG PDIRPAF H+LK V KDT KT+RR+GVIECDP+VR GLEK+ARH+VIPY
Sbjct: 366 QPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPY 425
Query: 696 MPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTK 875
MPMLVPP+NW YD+GA+LFLPS VMRTHG++ QR A+KR P KQLE V+EALNTLGNTK
Sbjct: 426 MPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTK 485
Query: 876 WRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSE 1055
WR+NK++ V+ +IWA GGRLA L+DRED PLP + +TEDE EI+ WKWKVK +KKENSE
Sbjct: 486 WRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSE 545
Query: 1056 RHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEG 1235
RHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHPHLNHLGSD+CRGILEFAEG
Sbjct: 546 RHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEG 605
Query: 1236 RPLGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAE 1415
RPLGKSG RWLKIH+AN+YAGGVDKLSY+GR+AFTENHLD IFDSAD+PLEGRRWWLGAE
Sbjct: 606 RPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAE 665
Query: 1416 DPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 1595
DPFQCL C NL++A RSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLV+G
Sbjct: 666 DPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSG 725
Query: 1596 DKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTY 1775
+KPADVYSGIAARVL+IMR DAEKDP T P+ALHA+LLI++VDRKLVKQTVMTSVYGVTY
Sbjct: 726 EKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTY 785
Query: 1776 IGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIA 1955
IGARDQIKRRLKER A+ DD L+ AS YAAK TL ALEEMF+ AR IM+WLG+CAKVIA
Sbjct: 786 IGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIA 845
Query: 1956 SENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHS 2135
SENQ VQWTTPLGLPVVQPYR LG HLIKTSLQ+L L++ETDK+MV+RQ+TAFPPNFVHS
Sbjct: 846 SENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHS 905
Query: 2136 LDGSHMMMTAIACKKAGLNFAGV 2204
LDGSHMMMTA+ACK AGLNFAGV
Sbjct: 906 LDGSHMMMTAVACKHAGLNFAGV 928
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 1167 bits (3020), Expect = 0.0
Identities = 572/741 (77%), Positives = 646/741 (87%), Gaps = 7/741 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RDSI GEQE + R ++A YF+ L ADMMAV+TMHKLMGLL
Sbjct: 188 NLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVVTMHKLMGLL 246
Query: 183 MTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEG------GESDAV 341
MT+ G +R+VQA+ +IGEAIE E +I +FL K++ D K +G + + +
Sbjct: 247 MTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKL 306
Query: 342 AKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQP 521
K++EKLRKKVT L+KKQK+ QVR IVKG D K WGQ+A KVGCRLI+LL+E AYIQP
Sbjct: 307 VKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQP 366
Query: 522 PVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMP 701
PVDQL D PPDIRPAF HSLK +TKD K +RR+GVIECD LVR+GLEKTARH+VIPYMP
Sbjct: 367 PVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMP 426
Query: 702 MLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWR 881
MLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FEAL+TLGNTKWR
Sbjct: 427 MLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWR 486
Query: 882 VNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERH 1061
+NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDEAEI+ WKWKVK K+N+ERH
Sbjct: 487 INKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERH 546
Query: 1062 SKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 1241
S RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRP
Sbjct: 547 SLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRP 606
Query: 1242 LGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDP 1421
LGKSGLRWLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDSAD+PLEGRRWWL AEDP
Sbjct: 607 LGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDP 666
Query: 1422 FQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 1601
FQCL ACINLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAA+VNLVAG+K
Sbjct: 667 FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEK 726
Query: 1602 PADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIG 1781
PADVYSGIAARV++IMR DAEKDP P ALHARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 727 PADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMTSVYGVTYIG 786
Query: 1782 ARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASE 1961
ARDQIKRRLKER AI DD+++F AS YAA+ TLTAL EMFQAAR IM+WLG+CAKVI+SE
Sbjct: 787 ARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLGECAKVISSE 846
Query: 1962 NQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLD 2141
NQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVM +RQ+TAFPPNFVHSLD
Sbjct: 847 NQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLD 906
Query: 2142 GSHMMMTAIACKKAGLNFAGV 2204
GSHMMMTA+ACKKAGLNFAGV
Sbjct: 907 GSHMMMTAVACKKAGLNFAGV 927
>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
isoform 3 [Theobroma cacao]
Length = 932
Score = 1166 bits (3017), Expect = 0.0
Identities = 571/741 (77%), Positives = 646/741 (87%), Gaps = 7/741 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RDSI GEQE + R ++A YF+ L ADMMAV+TMHKLMGLL
Sbjct: 188 NLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVVTMHKLMGLL 246
Query: 183 MTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEG------GESDAV 341
MT+ G +R+VQA+ +IGEAIE E +I +FL K++ D K +G + + +
Sbjct: 247 MTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKL 306
Query: 342 AKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQP 521
K++EKLRKKVT L+KKQK+ QVR IVKG D K WGQ+A KVGCRLI+LL+E AYIQP
Sbjct: 307 VKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQP 366
Query: 522 PVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMP 701
PVDQL D PPDIRPAF HSLK +TKD K +RR+GVIECD LVR+GLEKTARH+VIPYMP
Sbjct: 367 PVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMP 426
Query: 702 MLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWR 881
MLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FEAL+TLGNTKWR
Sbjct: 427 MLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWR 486
Query: 882 VNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERH 1061
+NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDEAEI+ WKWKVK K+N+ERH
Sbjct: 487 INKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERH 546
Query: 1062 SKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 1241
S RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRP
Sbjct: 547 SLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRP 606
Query: 1242 LGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDP 1421
LGKSGLRWLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDSAD+PLEGRRWWL AEDP
Sbjct: 607 LGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDP 666
Query: 1422 FQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 1601
FQCL ACINLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAA+VNLVAG+K
Sbjct: 667 FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEK 726
Query: 1602 PADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIG 1781
PADVYSGIAARV++IMR DAEKDP P ALHARLLI+QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 727 PADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMTSVYGVTYIG 786
Query: 1782 ARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASE 1961
ARDQIKRRLKER AI DD+++F AS YAA+ TLTAL EMFQAAR IM+WLG+CAKVI+SE
Sbjct: 787 ARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLGECAKVISSE 846
Query: 1962 NQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLD 2141
NQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVM +RQ+TAFPPNFVHSLD
Sbjct: 847 NQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLD 906
Query: 2142 GSHMMMTAIACKKAGLNFAGV 2204
GSHMMMTA+ACKKAGLNFAG+
Sbjct: 907 GSHMMMTAVACKKAGLNFAGL 927
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1166 bits (3016), Expect = 0.0
Identities = 557/735 (75%), Positives = 651/735 (88%), Gaps = 1/735 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQE +GK++ YA+YF LPADMMAVITMHKLMGLL
Sbjct: 219 NLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLL 278
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSN-TNKDNKNEGGESDAVAKEKEK 359
MT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ KD + E GE V +E+EK
Sbjct: 279 MTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH--VTQEQEK 336
Query: 360 LRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLA 539
LRKKVTNL+KKQKL+ V IV+ QDD KPWGQDA+AKVG RLI+LL++TAYIQPP +QLA
Sbjct: 337 LRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLA 396
Query: 540 DGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPI 719
PPDIRPAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPMLVPP+
Sbjct: 397 VDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPV 456
Query: 720 NWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVF 899
WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEAL+TLGNTKWR+NKRV
Sbjct: 457 KWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVL 516
Query: 900 GVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDV 1079
V+ +IWA GGRLADLVDR+D PLP +PDTEDEA W+WKVK++KKEN ERHS+RCD+
Sbjct: 517 SVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDI 576
Query: 1080 ELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGL 1259
ELKLAVA KMKDE+ FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG+SGL
Sbjct: 577 ELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGL 636
Query: 1260 RWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVA 1439
RWLKIH+ANL+AGGV+KLS +GRI FTENH+DDIFDS+DKPLEGRRWWL AEDPFQCL
Sbjct: 637 RWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAV 696
Query: 1440 CINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYS 1619
CINLS+A+RSSSPET++SH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYS
Sbjct: 697 CINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYS 756
Query: 1620 GIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIK 1799
GIAARVL+IM+ DA++DP +PDA+ AR+L++QVDRKLVKQTVMTSVYGVTYIGARDQIK
Sbjct: 757 GIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIK 816
Query: 1800 RRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQW 1979
RRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+ V+W
Sbjct: 817 RRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRW 876
Query: 1980 TTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMM 2159
TTPLGLPVVQPYR +G HLIKTSLQILTL+RET+KVMV+RQ+TAFPPNF+HSLDGSHMMM
Sbjct: 877 TTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMM 936
Query: 2160 TAIACKKAGLNFAGV 2204
TA+AC++AGLNFAGV
Sbjct: 937 TAVACRRAGLNFAGV 951
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 1163 bits (3009), Expect = 0.0
Identities = 565/742 (76%), Positives = 648/742 (87%), Gaps = 8/742 (1%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD+I EQE +R R ++ +F LPADMMAVITMHKLMGLL
Sbjct: 179 NLPYVKSLFLGWFEPLRDAIVAEQELCKRNL-RVSHRAHFSDLPADMMAVITMHKLMGLL 237
Query: 183 MTSDD-HGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDA------- 338
MT + +R+VQA+ +GEAIE E RI+ FL+K++ N + K GESDA
Sbjct: 238 MTGNGGSASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEK 297
Query: 339 VAKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQ 518
++KE+EKLRKKVT L+KKQK+QQVR IVKG DD +PWGQ+ KVG RLI+L++ETAYIQ
Sbjct: 298 LSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQ 357
Query: 519 PPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYM 698
PP+DQ+ DGPPDIRPAF H+LK +TKDT K++RR+GVIECDPLVR+GLEK+ARH+VIPYM
Sbjct: 358 PPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYM 417
Query: 699 PMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKW 878
PMLVPP+NWT YD+GAHLFLPS VMR HGS+ QR+A+KRA R QLE VF+AL+TLGNTKW
Sbjct: 418 PMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKW 477
Query: 879 RVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSER 1058
R+NKRV V+ +IWA+GG LA LVDRED PLP +P TEDEAEIR W WKV+++KKENSER
Sbjct: 478 RINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSER 537
Query: 1059 HSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGR 1238
HS+RCD+ELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGR
Sbjct: 538 HSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGR 597
Query: 1239 PLGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAED 1418
PLGKSGLRWLKIH+ANLYAGGVDKLSYDGRI+FTENHLDDIFDSAD+PLEGRRWWLGAED
Sbjct: 598 PLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAED 657
Query: 1419 PFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGD 1598
PFQCL ACINLS+ALRS SPET SH P+HQDGSCNGLQHYAALGRDKLGAAAVNLV G+
Sbjct: 658 PFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGE 717
Query: 1599 KPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYI 1778
KPADVYSGIA RVL+IM+ DAEKDP P+++HA+LL++QVDRKLVKQTVMTSVYGVTYI
Sbjct: 718 KPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYI 777
Query: 1779 GARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIAS 1958
GARDQIKRRLKER I DD QL+ A+ YAAK TL ALEEMF+ AR IM+WLG+CAKVIAS
Sbjct: 778 GARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIAS 837
Query: 1959 ENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSL 2138
ENQ V+WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSL
Sbjct: 838 ENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSL 897
Query: 2139 DGSHMMMTAIACKKAGLNFAGV 2204
DGSHMMMTA+ACK+AGLNFAGV
Sbjct: 898 DGSHMMMTAVACKEAGLNFAGV 919
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1163 bits (3008), Expect = 0.0
Identities = 565/734 (76%), Positives = 644/734 (87%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPYMKSLFLGWF P RD+I EQ+ GKNRG YA +FD LPA+MMAVITMHKLMGLL
Sbjct: 203 NLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLL 262
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362
MT G R+VQA+ IGEAIE E RI+ FL+K++ + E D + KE+E+L
Sbjct: 263 MTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMM-KERERL 321
Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542
RKKV L+KKQKL+QVR IVK QDD KPWGQD KVGCRLI++LMETAYIQPP DQL D
Sbjct: 322 RKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDD 381
Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722
GPPDIRPAF H+LK V +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +
Sbjct: 382 GPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQS 439
Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902
W YDKG +LFLPS +MRTHG++ QREA+KR P+KQLE VF+AL+TLGNTKWRVN++V G
Sbjct: 440 WLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLG 499
Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082
++++IWA+GGRLADLVDREDVPLP PDTEDEAEIR WKWKVK +KKEN ERHS+RCD+E
Sbjct: 500 IVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIE 559
Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262
LKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGLR
Sbjct: 560 LKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLR 619
Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442
WLKIH+AN+Y GGVDKLSY+GR+AF+ENHL+DIFDSA++PLEG+RWWLGAEDPFQCL C
Sbjct: 620 WLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATC 679
Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622
IN+++ALRS SPET IS+MPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG
Sbjct: 680 INIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 739
Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802
IAARVL+IM+ DA KDP P+ + ARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIK+
Sbjct: 740 IAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKK 799
Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982
RLKERG IEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA EN V+WT
Sbjct: 800 RLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWT 859
Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162
TPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT
Sbjct: 860 TPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 919
Query: 2163 AIACKKAGLNFAGV 2204
AIACK++GL+FAGV
Sbjct: 920 AIACKESGLSFAGV 933
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1162 bits (3007), Expect = 0.0
Identities = 558/735 (75%), Positives = 650/735 (88%), Gaps = 1/735 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPY+KSLFLGWF P RD I EQE +GK++ YA+Y LPADMMAVITMHKLMGLL
Sbjct: 220 NLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLL 279
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSN-TNKDNKNEGGESDAVAKEKEK 359
MT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ KD + E GE V +E+EK
Sbjct: 280 MTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH--VTQEQEK 337
Query: 360 LRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLA 539
LRKKVTNL+KKQKL+ V IV+ QDD KPWGQDA+AKVG RLIELL++TAYIQPP +QLA
Sbjct: 338 LRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLA 397
Query: 540 DGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPI 719
PPDIRPAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPMLVPP+
Sbjct: 398 VDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPV 457
Query: 720 NWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVF 899
WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEAL+TLG+TKWR+NKRV
Sbjct: 458 KWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVL 517
Query: 900 GVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDV 1079
VI +IWA GGRLADLVDR+D PLP +PDTEDEA W+WKVK++KKEN ERHS+RCD+
Sbjct: 518 SVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDI 577
Query: 1080 ELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGL 1259
ELKLAVA KMKDE+GFFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+L FAEGRPLG+SGL
Sbjct: 578 ELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGL 637
Query: 1260 RWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVA 1439
RWLKIH+ANL+AGGV+KLS +GRIAFTENH+DDIFDSADKPLEGRRWWL AEDPFQCL
Sbjct: 638 RWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAV 697
Query: 1440 CINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYS 1619
CINLS+A+RSSSPET+ISH+P+HQDGSCNGLQHYAALGRD+LGAAAVNLVAG+KPADVYS
Sbjct: 698 CINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYS 757
Query: 1620 GIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIK 1799
GIAARVL+IM+ DA++DP +PDA+ AR L++QVDRKLVKQTVMTSVYGVTYIGARDQIK
Sbjct: 758 GIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIK 817
Query: 1800 RRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQW 1979
RRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+ V+W
Sbjct: 818 RRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRW 877
Query: 1980 TTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMM 2159
TTPLGLPVVQPYR +G HLIKTSLQILTL++ET+KVMV+RQ+TAFPPNF+HSLDGSHMMM
Sbjct: 878 TTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMM 937
Query: 2160 TAIACKKAGLNFAGV 2204
TA+AC++AGLNFAGV
Sbjct: 938 TAVACRRAGLNFAGV 952
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 1162 bits (3006), Expect = 0.0
Identities = 560/736 (76%), Positives = 646/736 (87%), Gaps = 2/736 (0%)
Frame = +3
Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182
NLPYMKSLFLGWF P RD+I EQE+ R K++ YA YFD LPADMMAVITMHKLMGLL
Sbjct: 222 NLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLL 281
Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKN--EGGESDAVAKEKE 356
MT +HG R+VQA+ IG+AIEQEVRI+ FL+K++ NK EG ES+ V E+E
Sbjct: 282 MTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQE 341
Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536
KLRKKVT+L+KKQKL VR IVKGQDD KPWGQDA+AKVG R+IELL +TAYIQ P DQL
Sbjct: 342 KLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQL 401
Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716
AD PPDI PAF H+L+ V+K+T ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP
Sbjct: 402 ADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPP 461
Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896
+ WT YDKGAH FLPS VMRTHG++ QR+ +KR P+KQLE VFEAL+TLGNTKWRVN RV
Sbjct: 462 VKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRV 521
Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076
V+ +IW+ GGRLADLVDR DVPLP +P+TEDEA++R W+WKV+ +KKEN ERHS+RCD
Sbjct: 522 LSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 581
Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256
+ELKL+VA KMKDE+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSG
Sbjct: 582 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 641
Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436
L WLKIH+ANLYAGGVDKLS++GR+AFTENHLDDIFDSADKPLEGRRWWL AEDPFQCL
Sbjct: 642 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 701
Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616
CINL++ALRSSSPET ISH+P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVY
Sbjct: 702 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 761
Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796
SGIAARVL I++ DA++DP +PDAL A+LL+SQVDRKLVKQTVMTSVYGVTYIGARDQI
Sbjct: 762 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 821
Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976
KRRLKERGA ++++LF AS YAAK+TLTAL EMFQAAR IMSWLG+CAK+IASENQ V+
Sbjct: 822 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 881
Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156
WTTPLGLPVVQPYR LG H +KTSLQILTL+RET+KVMV+RQ+TAFPPNFVHSLDGSHMM
Sbjct: 882 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM 941
Query: 2157 MTAIACKKAGLNFAGV 2204
MTA+AC+KAGL FAGV
Sbjct: 942 MTAVACRKAGLTFAGV 957