BLASTX nr result
ID: Akebia24_contig00002191
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia24_contig00002191 (2206 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI27412.3| unnamed protein product [Vitis vinifera] 1222 0.0 ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1222 0.0 ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1197 0.0 ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 1191 0.0 ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A... 1180 0.0 ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 1179 0.0 gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 1179 0.0 dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa... 1176 0.0 ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1173 0.0 ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1173 0.0 ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1169 0.0 ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S... 1169 0.0 ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1169 0.0 ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 1167 0.0 ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob... 1166 0.0 sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1166 0.0 ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 1163 0.0 emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1163 0.0 sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1162 0.0 ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1162 0.0 >emb|CBI27412.3| unnamed protein product [Vitis vinifera] Length = 810 Score = 1222 bits (3163), Expect = 0.0 Identities = 596/734 (81%), Positives = 658/734 (89%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQ+ ++GKNR YA YFDHLPADMMAVITMHKLMGLL Sbjct: 9 NLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLL 68 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362 MT + +G R+VQA+ IGEAIE EVRI F++K++ + N +GG S+ V KE+EKL Sbjct: 69 MTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVTKEQEKL 127 Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542 RKKV+ L+KKQKLQQVR IVK QDD KPWGQDA KVG RLIELL+ETAYIQPP DQL D Sbjct: 128 RKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGD 187 Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722 GPPDIRPAF H+LK V K+T K RR+GVIECDPLVR+GLEKTARH+VIPYMPMLVPP+N Sbjct: 188 GPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLN 247 Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902 WT YDKGA+LFLPS VMR HG+R QREAIKRAPRK LE FEALNTLGNTKWR+NKRV G Sbjct: 248 WTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLG 307 Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082 VI +IWA+GGRLADLVDREDVPLP +PDTEDEAEIR WKWKV+++KKENSERHS+RCD+E Sbjct: 308 VIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIE 367 Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262 LKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLR Sbjct: 368 LKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 427 Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442 WLKIH+AN+YAGGVDKLSY+GR+AFTENHL+DIFDSAD+PLEGRRWWL AEDPFQCL C Sbjct: 428 WLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATC 487 Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622 INLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSG Sbjct: 488 INLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSG 547 Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802 IAARVL+IM+ DA+KDP T P+AL ARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR Sbjct: 548 IAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 607 Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982 RLKER AI D+ ++F AS YAAK TLTAL EMF+AAR IMSWLGDCAKVIASEN V+W Sbjct: 608 RLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWN 667 Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162 TPLGLPVVQPYR LG HLIKTSLQ+L+L+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT Sbjct: 668 TPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 727 Query: 2163 AIACKKAGLNFAGV 2204 A+AC+KAGLNFAGV Sbjct: 728 AVACQKAGLNFAGV 741 >ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis vinifera] Length = 978 Score = 1222 bits (3163), Expect = 0.0 Identities = 596/734 (81%), Positives = 658/734 (89%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQ+ ++GKNR YA YFDHLPADMMAVITMHKLMGLL Sbjct: 177 NLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLL 236 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362 MT + +G R+VQA+ IGEAIE EVRI F++K++ + N +GG S+ V KE+EKL Sbjct: 237 MTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVTKEQEKL 295 Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542 RKKV+ L+KKQKLQQVR IVK QDD KPWGQDA KVG RLIELL+ETAYIQPP DQL D Sbjct: 296 RKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGD 355 Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722 GPPDIRPAF H+LK V K+T K RR+GVIECDPLVR+GLEKTARH+VIPYMPMLVPP+N Sbjct: 356 GPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLN 415 Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902 WT YDKGA+LFLPS VMR HG+R QREAIKRAPRK LE FEALNTLGNTKWR+NKRV G Sbjct: 416 WTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLG 475 Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082 VI +IWA+GGRLADLVDREDVPLP +PDTEDEAEIR WKWKV+++KKENSERHS+RCD+E Sbjct: 476 VIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIE 535 Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262 LKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLR Sbjct: 536 LKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 595 Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442 WLKIH+AN+YAGGVDKLSY+GR+AFTENHL+DIFDSAD+PLEGRRWWL AEDPFQCL C Sbjct: 596 WLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATC 655 Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622 INLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSG Sbjct: 656 INLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSG 715 Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802 IAARVL+IM+ DA+KDP T P+AL ARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR Sbjct: 716 IAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 775 Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982 RLKER AI D+ ++F AS YAAK TLTAL EMF+AAR IMSWLGDCAKVIASEN V+W Sbjct: 776 RLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWN 835 Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162 TPLGLPVVQPYR LG HLIKTSLQ+L+L+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT Sbjct: 836 TPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 895 Query: 2163 AIACKKAGLNFAGV 2204 A+AC+KAGLNFAGV Sbjct: 896 AVACQKAGLNFAGV 909 >ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera] Length = 1035 Score = 1197 bits (3097), Expect = 0.0 Identities = 585/736 (79%), Positives = 651/736 (88%), Gaps = 2/736 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPYMKSLFLGWF P RD+I EQE R GKN+ YA YFD LPADMM+VITMHKL+GLL Sbjct: 231 NLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLL 290 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKS-RSNTNKDNKNEGGESDAVAKEKEK 359 MT +HG R+VQA+ IG+AIEQEVRI+NFL+K+ R KD EGG D V E+EK Sbjct: 291 MTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEK 350 Query: 360 LRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVD-QL 536 LRKKVTNL+KKQKL R IVKG D+ KPWG +A+AKVG RLIELLM+TAYIQPPVD QL Sbjct: 351 LRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQL 410 Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716 AD PPDIRPAF H+ K V ++ K RRFGVIECDPLV++GLE+TARH+VIPY+PMLVPP Sbjct: 411 ADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPP 470 Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896 + WT YDKGAHLFLPS VMRTHG+R QREA+KRAPR QLE VFEALNTLGNTKWR+NKR+ Sbjct: 471 LKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRL 530 Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076 F V+ +IWA GG LADLVDR DVPLP +PDTEDEA++R WKWKVK++KK NSERHS+RCD Sbjct: 531 FDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCD 590 Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256 +ELKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SG Sbjct: 591 IELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSG 650 Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436 L WLKIH+ANL+AGGVDKLS++GRI FTENHLDDIFDSAD+PLEG+RWWL AEDPFQ L Sbjct: 651 LHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLA 710 Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616 ACINLS+ALRSSSPETTISH+P+HQDGSCNGLQHYAALGRD+LGA AVNLVAG+KPADVY Sbjct: 711 ACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVY 770 Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796 SGIAARVL+IM+ DAEKDP +PDAL AR+LI+QVDRKLVKQTVMTSVYGVTYIGARDQI Sbjct: 771 SGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQI 830 Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976 KRRLKER AI DD +LF A+ YAAKITLTAL EMFQAAR IMSWLGDCAK+IASENQ V+ Sbjct: 831 KRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVR 890 Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156 WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RET+ +MV+RQ+TAFPPNFVHSLDGSHMM Sbjct: 891 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMM 950 Query: 2157 MTAIACKKAGLNFAGV 2204 MTAIACKKAGLNFAGV Sbjct: 951 MTAIACKKAGLNFAGV 966 >ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica] gi|462422319|gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica] Length = 1006 Score = 1191 bits (3082), Expect = 0.0 Identities = 578/749 (77%), Positives = 660/749 (88%), Gaps = 15/749 (2%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD+I +Q+ ++ +R ++A YFDHLPAD MAVITMHKLMGLL Sbjct: 189 NLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVITMHKLMGLL 248 Query: 183 MTSDDH-GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK-DNKNEGG---------- 326 MT++ G VR+VQA+ IGEAIE EVRI+ FL+K++ N D K E Sbjct: 249 MTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEK 308 Query: 327 ---ESDAVAKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELL 497 E + + KE+E+LRKKV L+K+QK+QQVR IVK Q+DLKPWGQ+A KVGCRLI+LL Sbjct: 309 LADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLL 368 Query: 498 METAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTAR 677 M+TAYIQPPVDQ+ DGPPDIRPAF H+LK +T+DT KT+RR+GVIECDP+VR+G+EKTAR Sbjct: 369 MDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTAR 428 Query: 678 HVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALN 857 H+V+PYMPMLVPPINWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE VFEAL+ Sbjct: 429 HMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALD 488 Query: 858 TLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTL 1037 TLG+TKWRVNKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDEAEIR WKWK+K Sbjct: 489 TLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAA 548 Query: 1038 KKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGI 1217 KKENSERHS+RCD+ELKLA + KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGI Sbjct: 549 KKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDMCRGI 608 Query: 1218 LEFAEGRPLGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRR 1397 LEF+EGR LGKSGLRWLKIH+ANLYAGGVDKLS+D R AFTENH+D+IFDSAD+PLEGRR Sbjct: 609 LEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDSADRPLEGRR 668 Query: 1398 WWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAA 1577 WWLGAEDPFQCL ACINL +ALRS SPETTIS+MP+HQDGSCNGLQHYAALGRDKLGAAA Sbjct: 669 WWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAA 728 Query: 1578 VNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTS 1757 VNLV GDKPADVYSGIAARVL+IMR DAEKDP T P+ALHARLLI+QVDRKLVKQTVMTS Sbjct: 729 VNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRKLVKQTVMTS 788 Query: 1758 VYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGD 1937 VYGVTY+GARDQIKRRLKERG+I DD+ LF A+ YAA+ TLTAL EMF+AAR IMSWLG+ Sbjct: 789 VYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAARSIMSWLGE 848 Query: 1938 CAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFP 2117 CAKVIASENQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFP Sbjct: 849 CAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFP 908 Query: 2118 PNFVHSLDGSHMMMTAIACKKAGLNFAGV 2204 PNFVHSLDGSHMMMTA+ACKKAGLNFAGV Sbjct: 909 PNFVHSLDGSHMMMTAVACKKAGLNFAGV 937 >ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda] gi|548846502|gb|ERN05778.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda] Length = 1006 Score = 1180 bits (3052), Expect = 0.0 Identities = 572/734 (77%), Positives = 640/734 (87%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPYMKSLFLGWF P RD I EQ ++ GKN+G YA YF LPADMM+VITMHKLMGLL Sbjct: 204 NLPYMKSLFLGWFEPLRDIIASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLL 263 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362 MT D+G RLVQA+ +IGEAIEQEV+I+ F +K++ ++K+ K +G E + KEKE L Sbjct: 264 MTGTDNGSTRLVQAACQIGEAIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESL 323 Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542 RK+VTNL+KKQKL QVR IVKGQDD KPWG D AKVG RLIELL+ETAY+QPPVDQ A+ Sbjct: 324 RKRVTNLMKKQKLHQVRKIVKGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAE 383 Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722 GPPDIRPAFRH LK VTK+ K RR+GVIECDPL+ +GLEKTARH+VIPYMPMLVPP+ Sbjct: 384 GPPDIRPAFRHILKTVTKNDQKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVK 443 Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902 WT YD+G HLFLPS VMR HG+R QR AIK APRKQL V+EAL+TLG TKWRVNKRV G Sbjct: 444 WTGYDRGGHLFLPSYVMRIHGARQQRYAIKHAPRKQLLKVYEALDTLGTTKWRVNKRVLG 503 Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082 VI +IWA GGRLADLVDREDV +P +PDTEDEA+IR WKW VK +K+NSE HS+RCD E Sbjct: 504 VIDRIWADGGRLADLVDREDVAIPEKPDTEDEAKIREWKWLVKGARKKNSELHSQRCDTE 563 Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262 LKL VA +MKDE+GF YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLR Sbjct: 564 LKLNVARRMKDEEGFHYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLR 623 Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442 WLKIH+ANLYAGGVDKLSYDGR+ F ENHL+DIFDSAD+PLEG RWWLGAEDPFQCL AC Sbjct: 624 WLKIHLANLYAGGVDKLSYDGRLEFVENHLEDIFDSADRPLEGGRWWLGAEDPFQCLAAC 683 Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622 +NLS+ALRSSSP+TTISHMP+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSG Sbjct: 684 VNLSEALRSSSPDTTISHMPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSG 743 Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802 IA RVL+IMR D++KDP + P+ A+LL++QVDRKLVKQTVMTSVYGVTY+GARDQI R Sbjct: 744 IAERVLDIMRRDSQKDPTSDPNVARAKLLLNQVDRKLVKQTVMTSVYGVTYVGARDQIMR 803 Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982 RLKERGAI D+ +LF AS Y AK+TLTAL EMFQAAR IMSWLGDCAKVIASEN+ V+WT Sbjct: 804 RLKERGAITDEKELFSASCYTAKVTLTALGEMFQAARSIMSWLGDCAKVIASENETVRWT 863 Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162 TPLGLPVVQPYR LG HLIKTSLQ+L LR ETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT Sbjct: 864 TPLGLPVVQPYRKLGRHLIKTSLQVLALRCETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 923 Query: 2163 AIACKKAGLNFAGV 2204 AIACKKAGLNFAGV Sbjct: 924 AIACKKAGLNFAGV 937 >ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa Japonica Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza sativa Japonica Group] Length = 1017 Score = 1179 bits (3050), Expect = 0.0 Identities = 565/736 (76%), Positives = 655/736 (88%), Gaps = 2/736 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQE R ++ARYF+ LPADMMAVITMHKLMGLL Sbjct: 214 NLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLL 273 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356 MT G VR++QA+ +IGEAIE EVRI+ FL+K++ +NK DN+ EGG+SD +AKE+E Sbjct: 274 MTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQE 332 Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536 +LRKKVT+L+KKQK++QVR+IVK QD+ KPWGQDA AKVG RLIEL++ETAYIQPP Q Sbjct: 333 RLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS 392 Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716 ADGPPDIRPAF H ++ V ++ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP Sbjct: 393 ADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 452 Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896 I+WT YDKGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEALNTLG+TKWRVNKRV Sbjct: 453 ISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRV 512 Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076 ++ +IW++GGRLADLVDR DV LP +PDTEDE +++ W+W ++ KKENSERHS+RCD Sbjct: 513 LSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCD 572 Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256 VELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG Sbjct: 573 VELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 632 Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436 LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL Sbjct: 633 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 692 Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616 CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY Sbjct: 693 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 752 Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796 +GIA RV+EIM+ DA KDP T PDA ARLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QI Sbjct: 753 TGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQI 812 Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976 KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V+ Sbjct: 813 KRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVR 872 Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156 WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM Sbjct: 873 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 932 Query: 2157 MTAIACKKAGLNFAGV 2204 MTA+ACK+ GLNFAGV Sbjct: 933 MTAVACKRQGLNFAGV 948 >gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group] Length = 983 Score = 1179 bits (3050), Expect = 0.0 Identities = 565/736 (76%), Positives = 655/736 (88%), Gaps = 2/736 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQE R ++ARYF+ LPADMMAVITMHKLMGLL Sbjct: 180 NLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLL 239 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356 MT G VR++QA+ +IGEAIE EVRI+ FL+K++ +NK DN+ EGG+SD +AKE+E Sbjct: 240 MTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQE 298 Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536 +LRKKVT+L+KKQK++QVR+IVK QD+ KPWGQDA AKVG RLIEL++ETAYIQPP Q Sbjct: 299 RLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS 358 Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716 ADGPPDIRPAF H ++ V ++ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP Sbjct: 359 ADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 418 Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896 I+WT YDKGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEALNTLG+TKWRVNKRV Sbjct: 419 ISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRV 478 Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076 ++ +IW++GGRLADLVDR DV LP +PDTEDE +++ W+W ++ KKENSERHS+RCD Sbjct: 479 LSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCD 538 Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256 VELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG Sbjct: 539 VELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 598 Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436 LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL Sbjct: 599 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 658 Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616 CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY Sbjct: 659 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 718 Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796 +GIA RV+EIM+ DA KDP T PDA ARLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QI Sbjct: 719 TGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQI 778 Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976 KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V+ Sbjct: 779 KRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVR 838 Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156 WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM Sbjct: 839 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 898 Query: 2157 MTAIACKKAGLNFAGV 2204 MTA+ACK+ GLNFAGV Sbjct: 899 MTAVACKRQGLNFAGV 914 >dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group] gi|48716846|dbj|BAD23544.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group] gi|215694941|dbj|BAG90132.1| unnamed protein product [Oryza sativa Japonica Group] Length = 951 Score = 1176 bits (3041), Expect = 0.0 Identities = 564/736 (76%), Positives = 654/736 (88%), Gaps = 2/736 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQE R ++ARYF+ LPADMMAVITMHKLMGLL Sbjct: 214 NLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLL 273 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356 MT G VR++QA+ +IGEAIE EVRI+ FL+K++ +NK DN+ EGG+SD +AKE+E Sbjct: 274 MTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQE 332 Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536 +LRKKVT+L+KKQK++QVR+IVK QD+ KPWGQDA AKVG RLIEL++ETAYIQPP Q Sbjct: 333 RLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS 392 Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716 ADGPPDIRPAF H ++ V ++ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP Sbjct: 393 ADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 452 Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896 I+WT YDKGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEALNTLG+TKWRVNKRV Sbjct: 453 ISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRV 512 Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076 ++ +IW++GGRLADLVDR DV LP +PDTEDE +++ W+W ++ KKENSERHS+RCD Sbjct: 513 LSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCD 572 Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256 VELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG Sbjct: 573 VELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 632 Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436 LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL Sbjct: 633 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 692 Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616 CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY Sbjct: 693 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 752 Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796 +GIA RV+EIM+ DA KDP T PDA ARLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QI Sbjct: 753 TGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQI 812 Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976 KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V+ Sbjct: 813 KRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVR 872 Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156 WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM Sbjct: 873 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 932 Query: 2157 MTAIACKKAGLNFAGV 2204 MTA+ACK+ GLNFA V Sbjct: 933 MTAVACKRQGLNFAVV 948 >ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform X2 [Oryza brachyantha] Length = 839 Score = 1173 bits (3035), Expect = 0.0 Identities = 563/736 (76%), Positives = 651/736 (88%), Gaps = 2/736 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQ+ + R ++ARYF+ LPADMMAVITMHKLMGLL Sbjct: 36 NLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARYFNMLPADMMAVITMHKLMGLL 95 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNK--DNKNEGGESDAVAKEKE 356 MT G VR++QA+ +IGEAIE EVR++ FL+K + +K DN+ E G SD +AKE+E Sbjct: 96 MTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSD-IAKEQE 154 Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536 +LRKKVT+L+KK KL+QVR+IVK QD+ KPWGQD AKVG RLIEL++ETAYIQPP Q Sbjct: 155 RLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQS 214 Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716 ADGPPDIRPAF H ++ V K+ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PP Sbjct: 215 ADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPP 274 Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896 I+WT YDKGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEAL+TLG+TKWRVNKRV Sbjct: 275 ISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRV 334 Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076 ++ +IW++GGRLADLVDR DV LP +PDTEDEA+++ W+W +K KKENSERHS+RCD Sbjct: 335 LSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNLKAAKKENSERHSQRCD 394 Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256 VELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSG Sbjct: 395 VELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSG 454 Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436 LRWLKIH+ANLYAGGVDKLSYDGRIAFTENHL+DIFDSAD+PLEG+RWWLGAEDPFQCL Sbjct: 455 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLA 514 Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616 CINL++ALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY Sbjct: 515 VCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVY 574 Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796 +GIA RVLEIMR DA KDP T PDA AR+L+ QVDRKLVKQTVMTSVYGVTY+GAR+QI Sbjct: 575 TGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQTVMTSVYGVTYVGAREQI 634 Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976 KRRLKER I DDS+LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAK+IA EN+ V+ Sbjct: 635 KRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKIIACENEPVK 694 Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156 WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMM Sbjct: 695 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 754 Query: 2157 MTAIACKKAGLNFAGV 2204 MTA+ACK+ GLNFAGV Sbjct: 755 MTAVACKRQGLNFAGV 770 >ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum tuberosum] Length = 993 Score = 1173 bits (3035), Expect = 0.0 Identities = 569/734 (77%), Positives = 648/734 (88%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD+I EQ+ GKNRG YA +FD LPA+MMAVITMHKLMGLL Sbjct: 195 NLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLL 254 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362 MT G R+VQA+ IGEAIE E RI+ FL+K++ N + E + + KE+E+L Sbjct: 255 MTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE--TAGDIMKERERL 312 Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542 RKKV L+KKQKLQQVR IVK QDD KPWGQD KVGC+LI++L+ETAYIQPP DQL D Sbjct: 313 RKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDD 372 Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722 PPDIRPAF H+LK V +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP N Sbjct: 373 CPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQN 430 Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902 W+ YD+GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+AL+TLGNTKWRVNKRV G Sbjct: 431 WSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLG 490 Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082 ++ +IWA+GGRLADLVDREDVPLP +PDTEDE EI+ WKWKVK KKEN ERHS+RCD+E Sbjct: 491 ILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKENCERHSQRCDIE 550 Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262 LKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+EGRPLGKSGLR Sbjct: 551 LKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLR 610 Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442 WLKIH+AN+Y GGVDKLSY+GR AF+ENH++DIFDSAD+PLEGRRWWLGAEDPFQCL C Sbjct: 611 WLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATC 670 Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622 IN+S+ALRS SPET+ISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG Sbjct: 671 INISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 730 Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802 IAARVL+IM+ DA+KDP T P+ + ARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKR Sbjct: 731 IAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKR 790 Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982 RLKERGAIEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA ENQ V+WT Sbjct: 791 RLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWT 850 Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162 TPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT Sbjct: 851 TPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 910 Query: 2163 AIACKKAGLNFAGV 2204 AI CK+AGL+FAGV Sbjct: 911 AITCKEAGLSFAGV 924 >ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum lycopersicum] Length = 993 Score = 1169 bits (3024), Expect = 0.0 Identities = 568/734 (77%), Positives = 648/734 (88%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P +D+I EQ+ GKNRG YA +FD LPA+MMAVITMHKLMGLL Sbjct: 195 NLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLL 254 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362 MT G R+VQA+ IGEAIE E RI+ FL+K++ N + E + + KE+E+L Sbjct: 255 MTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE--TAGDIMKERERL 312 Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542 RKKV L+KKQKLQQVR IVK QDD KPWGQD KVGCRLI++L+ETAYIQPP DQL D Sbjct: 313 RKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLED 372 Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722 PPDIRPAF H+LK V DT+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP N Sbjct: 373 CPPDIRPAFMHTLKTV--DTVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQN 430 Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902 W+ YD+GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+AL+TLGNTKWRVNKRV G Sbjct: 431 WSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLG 490 Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082 ++ +IWA+GGRLADLVDREDVPLP +PDTE+E EI+ WKWKVK KKEN ERHS+RCD+E Sbjct: 491 ILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKWKWKVKAAKKENCERHSQRCDIE 550 Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262 LKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+EGRPLGKSGLR Sbjct: 551 LKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLR 610 Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442 WLKIH+AN+Y GGVDKLS +GR AF+ENH++DIFDSAD+PLEGRRWWLGAEDPFQCL C Sbjct: 611 WLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATC 670 Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622 I++S+ALRS SPET+ISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG Sbjct: 671 ISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 730 Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802 IAARVL+IM+ DA+KDP T P+ + ARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKR Sbjct: 731 IAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKR 790 Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982 RLKERGAIEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA ENQ V+WT Sbjct: 791 RLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWT 850 Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162 TPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT Sbjct: 851 TPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 910 Query: 2163 AIACKKAGLNFAGV 2204 AIACK+AGL+FAGV Sbjct: 911 AIACKEAGLSFAGV 924 >ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor] gi|241924412|gb|EER97556.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor] Length = 976 Score = 1169 bits (3024), Expect = 0.0 Identities = 560/737 (75%), Positives = 654/737 (88%), Gaps = 3/737 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQE +R ++ YF+ LPADMMAVITMHKLMGLL Sbjct: 172 NLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLL 231 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNE---GGESDAVAKEK 353 MT G VR++QA+ +IGEAIE EVRI FL+K+R +NK+ + E G++D +AKE+ Sbjct: 232 MTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTD-IAKEQ 290 Query: 354 EKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQ 533 ++LRKKVT+L+KKQKL+QVR+IVK QD+ +PWGQD QAKVG RLIEL M+TA+IQPP Q Sbjct: 291 QRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQ 350 Query: 534 LADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVP 713 +DG PDIRPAFRH ++ V K+ K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+P Sbjct: 351 SSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIP 410 Query: 714 PINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKR 893 PI WT YDKGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEALNTLG+TKWRVNKR Sbjct: 411 PICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKR 470 Query: 894 VFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRC 1073 V ++ +IW++GGRLADLVDR DVPLP +PDTEDE I++WKW ++++KKENSERHS+RC Sbjct: 471 VLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRC 530 Query: 1074 DVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKS 1253 DVELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKS Sbjct: 531 DVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKS 590 Query: 1254 GLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCL 1433 GL WLKIH+ANLYAGGVDKLSYDGR+AFTENHL++IFDSAD+PLEG+RWWLGAEDPFQCL Sbjct: 591 GLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCL 650 Query: 1434 VACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADV 1613 C+NL++ALRSSSPETTISH+P+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADV Sbjct: 651 AVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADV 710 Query: 1614 YSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQ 1793 Y+GIA RVLEIMR+DA+KDP PD ARL++ QVDRKLVKQTVMTSVYGVTY+GARDQ Sbjct: 711 YTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQ 770 Query: 1794 IKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLV 1973 IKRRLKERG I D+++LF AS YAAK+TLTAL EMFQAAR IM+WLGDCAKVIA EN+ V Sbjct: 771 IKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPV 830 Query: 1974 QWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHM 2153 +WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHM Sbjct: 831 RWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHM 890 Query: 2154 MMTAIACKKAGLNFAGV 2204 MMTA+ACK+ GLNFAGV Sbjct: 891 MMTAVACKRQGLNFAGV 907 >ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] Length = 997 Score = 1169 bits (3024), Expect = 0.0 Identities = 571/743 (76%), Positives = 646/743 (86%), Gaps = 9/743 (1%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD+I EQE R N+ ++ YFD LPADMMAVITMHKLMGLL Sbjct: 186 NLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLL 245 Query: 183 MTSDD-HGMVRLVQASLEIGEAIEQEVRIYNFL------KKSRSNTNKDNKNEGGESDA- 338 MT++ +G VR+VQA+ +GEAIE E RI+ FL KKS N + K E SDA Sbjct: 246 MTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAE 305 Query: 339 -VAKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYI 515 +AKE+EKLRKKVT L+KKQK+QQVR + KG DD PWGQ+AQ KVGCRLI+LL+ETAYI Sbjct: 306 KLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYI 365 Query: 516 QPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPY 695 QPPV+QL DG PDIRPAF H+LK V KDT KT+RR+GVIECDP+VR GLEK+ARH+VIPY Sbjct: 366 QPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPY 425 Query: 696 MPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTK 875 MPMLVPP+NW YD+GA+LFLPS VMRTHG++ QR A+KR P KQLE V+EALNTLGNTK Sbjct: 426 MPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTK 485 Query: 876 WRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSE 1055 WR+NK++ V+ +IWA GGRLA L+DRED PLP + +TEDE EI+ WKWKVK +KKENSE Sbjct: 486 WRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSE 545 Query: 1056 RHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEG 1235 RHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHPHLNHLGSD+CRGILEFAEG Sbjct: 546 RHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEG 605 Query: 1236 RPLGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAE 1415 RPLGKSG RWLKIH+AN+YAGGVDKLSY+GR+AFTENHLD IFDSAD+PLEGRRWWLGAE Sbjct: 606 RPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAE 665 Query: 1416 DPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 1595 DPFQCL C NL++A RSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLV+G Sbjct: 666 DPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSG 725 Query: 1596 DKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTY 1775 +KPADVYSGIAARVL+IMR DAEKDP T P+ALHA+LLI++VDRKLVKQTVMTSVYGVTY Sbjct: 726 EKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTY 785 Query: 1776 IGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIA 1955 IGARDQIKRRLKER A+ DD L+ AS YAAK TL ALEEMF+ AR IM+WLG+CAKVIA Sbjct: 786 IGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIA 845 Query: 1956 SENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHS 2135 SENQ VQWTTPLGLPVVQPYR LG HLIKTSLQ+L L++ETDK+MV+RQ+TAFPPNFVHS Sbjct: 846 SENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHS 905 Query: 2136 LDGSHMMMTAIACKKAGLNFAGV 2204 LDGSHMMMTA+ACK AGLNFAGV Sbjct: 906 LDGSHMMMTAVACKHAGLNFAGV 928 >ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao] gi|590698457|ref|XP_007045722.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao] gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao] Length = 996 Score = 1167 bits (3020), Expect = 0.0 Identities = 572/741 (77%), Positives = 646/741 (87%), Gaps = 7/741 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RDSI GEQE + R ++A YF+ L ADMMAV+TMHKLMGLL Sbjct: 188 NLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVVTMHKLMGLL 246 Query: 183 MTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEG------GESDAV 341 MT+ G +R+VQA+ +IGEAIE E +I +FL K++ D K +G + + + Sbjct: 247 MTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKL 306 Query: 342 AKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQP 521 K++EKLRKKVT L+KKQK+ QVR IVKG D K WGQ+A KVGCRLI+LL+E AYIQP Sbjct: 307 VKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQP 366 Query: 522 PVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMP 701 PVDQL D PPDIRPAF HSLK +TKD K +RR+GVIECD LVR+GLEKTARH+VIPYMP Sbjct: 367 PVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMP 426 Query: 702 MLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWR 881 MLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FEAL+TLGNTKWR Sbjct: 427 MLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWR 486 Query: 882 VNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERH 1061 +NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDEAEI+ WKWKVK K+N+ERH Sbjct: 487 INKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERH 546 Query: 1062 SKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 1241 S RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRP Sbjct: 547 SLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRP 606 Query: 1242 LGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDP 1421 LGKSGLRWLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDSAD+PLEGRRWWL AEDP Sbjct: 607 LGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDP 666 Query: 1422 FQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 1601 FQCL ACINLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAA+VNLVAG+K Sbjct: 667 FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEK 726 Query: 1602 PADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIG 1781 PADVYSGIAARV++IMR DAEKDP P ALHARLLI+QVDRKLVKQTVMTSVYGVTYIG Sbjct: 727 PADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMTSVYGVTYIG 786 Query: 1782 ARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASE 1961 ARDQIKRRLKER AI DD+++F AS YAA+ TLTAL EMFQAAR IM+WLG+CAKVI+SE Sbjct: 787 ARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLGECAKVISSE 846 Query: 1962 NQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLD 2141 NQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVM +RQ+TAFPPNFVHSLD Sbjct: 847 NQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLD 906 Query: 2142 GSHMMMTAIACKKAGLNFAGV 2204 GSHMMMTA+ACKKAGLNFAGV Sbjct: 907 GSHMMMTAVACKKAGLNFAGV 927 >ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao] gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao] Length = 932 Score = 1166 bits (3017), Expect = 0.0 Identities = 571/741 (77%), Positives = 646/741 (87%), Gaps = 7/741 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RDSI GEQE + R ++A YF+ L ADMMAV+TMHKLMGLL Sbjct: 188 NLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVVTMHKLMGLL 246 Query: 183 MTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEG------GESDAV 341 MT+ G +R+VQA+ +IGEAIE E +I +FL K++ D K +G + + + Sbjct: 247 MTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKL 306 Query: 342 AKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQP 521 K++EKLRKKVT L+KKQK+ QVR IVKG D K WGQ+A KVGCRLI+LL+E AYIQP Sbjct: 307 VKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQP 366 Query: 522 PVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMP 701 PVDQL D PPDIRPAF HSLK +TKD K +RR+GVIECD LVR+GLEKTARH+VIPYMP Sbjct: 367 PVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMP 426 Query: 702 MLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWR 881 MLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FEAL+TLGNTKWR Sbjct: 427 MLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWR 486 Query: 882 VNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERH 1061 +NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDEAEI+ WKWKVK K+N+ERH Sbjct: 487 INKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERH 546 Query: 1062 SKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRP 1241 S RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRP Sbjct: 547 SLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRP 606 Query: 1242 LGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDP 1421 LGKSGLRWLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDSAD+PLEGRRWWL AEDP Sbjct: 607 LGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDP 666 Query: 1422 FQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDK 1601 FQCL ACINLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAA+VNLVAG+K Sbjct: 667 FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEK 726 Query: 1602 PADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIG 1781 PADVYSGIAARV++IMR DAEKDP P ALHARLLI+QVDRKLVKQTVMTSVYGVTYIG Sbjct: 727 PADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMTSVYGVTYIG 786 Query: 1782 ARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASE 1961 ARDQIKRRLKER AI DD+++F AS YAA+ TLTAL EMFQAAR IM+WLG+CAKVI+SE Sbjct: 787 ARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLGECAKVISSE 846 Query: 1962 NQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLD 2141 NQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVM +RQ+TAFPPNFVHSLD Sbjct: 847 NQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLD 906 Query: 2142 GSHMMMTAIACKKAGLNFAGV 2204 GSHMMMTA+ACKKAGLNFAG+ Sbjct: 907 GSHMMMTAVACKKAGLNFAGL 927 >sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2, chloroplastic/mitochondrial; AltName: Full=NsRpoT-B; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2; Flags: Precursor gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris] Length = 1020 Score = 1166 bits (3016), Expect = 0.0 Identities = 557/735 (75%), Positives = 651/735 (88%), Gaps = 1/735 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQE +GK++ YA+YF LPADMMAVITMHKLMGLL Sbjct: 219 NLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLL 278 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSN-TNKDNKNEGGESDAVAKEKEK 359 MT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ KD + E GE V +E+EK Sbjct: 279 MTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH--VTQEQEK 336 Query: 360 LRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLA 539 LRKKVTNL+KKQKL+ V IV+ QDD KPWGQDA+AKVG RLI+LL++TAYIQPP +QLA Sbjct: 337 LRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLA 396 Query: 540 DGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPI 719 PPDIRPAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPMLVPP+ Sbjct: 397 VDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPV 456 Query: 720 NWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVF 899 WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEAL+TLGNTKWR+NKRV Sbjct: 457 KWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVL 516 Query: 900 GVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDV 1079 V+ +IWA GGRLADLVDR+D PLP +PDTEDEA W+WKVK++KKEN ERHS+RCD+ Sbjct: 517 SVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDI 576 Query: 1080 ELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGL 1259 ELKLAVA KMKDE+ FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG+SGL Sbjct: 577 ELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGL 636 Query: 1260 RWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVA 1439 RWLKIH+ANL+AGGV+KLS +GRI FTENH+DDIFDS+DKPLEGRRWWL AEDPFQCL Sbjct: 637 RWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAV 696 Query: 1440 CINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYS 1619 CINLS+A+RSSSPET++SH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYS Sbjct: 697 CINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYS 756 Query: 1620 GIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIK 1799 GIAARVL+IM+ DA++DP +PDA+ AR+L++QVDRKLVKQTVMTSVYGVTYIGARDQIK Sbjct: 757 GIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIK 816 Query: 1800 RRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQW 1979 RRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+ V+W Sbjct: 817 RRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRW 876 Query: 1980 TTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMM 2159 TTPLGLPVVQPYR +G HLIKTSLQILTL+RET+KVMV+RQ+TAFPPNF+HSLDGSHMMM Sbjct: 877 TTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMM 936 Query: 2160 TAIACKKAGLNFAGV 2204 TA+AC++AGLNFAGV Sbjct: 937 TAVACRRAGLNFAGV 951 >ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa] gi|550332836|gb|EEE88785.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa] Length = 988 Score = 1163 bits (3009), Expect = 0.0 Identities = 565/742 (76%), Positives = 648/742 (87%), Gaps = 8/742 (1%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD+I EQE +R R ++ +F LPADMMAVITMHKLMGLL Sbjct: 179 NLPYVKSLFLGWFEPLRDAIVAEQELCKRNL-RVSHRAHFSDLPADMMAVITMHKLMGLL 237 Query: 183 MTSDD-HGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDA------- 338 MT + +R+VQA+ +GEAIE E RI+ FL+K++ N + K GESDA Sbjct: 238 MTGNGGSASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEK 297 Query: 339 VAKEKEKLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQ 518 ++KE+EKLRKKVT L+KKQK+QQVR IVKG DD +PWGQ+ KVG RLI+L++ETAYIQ Sbjct: 298 LSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQ 357 Query: 519 PPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYM 698 PP+DQ+ DGPPDIRPAF H+LK +TKDT K++RR+GVIECDPLVR+GLEK+ARH+VIPYM Sbjct: 358 PPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYM 417 Query: 699 PMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKW 878 PMLVPP+NWT YD+GAHLFLPS VMR HGS+ QR+A+KRA R QLE VF+AL+TLGNTKW Sbjct: 418 PMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKW 477 Query: 879 RVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSER 1058 R+NKRV V+ +IWA+GG LA LVDRED PLP +P TEDEAEIR W WKV+++KKENSER Sbjct: 478 RINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSER 537 Query: 1059 HSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGR 1238 HS+RCD+ELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGR Sbjct: 538 HSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGR 597 Query: 1239 PLGKSGLRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAED 1418 PLGKSGLRWLKIH+ANLYAGGVDKLSYDGRI+FTENHLDDIFDSAD+PLEGRRWWLGAED Sbjct: 598 PLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAED 657 Query: 1419 PFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGD 1598 PFQCL ACINLS+ALRS SPET SH P+HQDGSCNGLQHYAALGRDKLGAAAVNLV G+ Sbjct: 658 PFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGE 717 Query: 1599 KPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYI 1778 KPADVYSGIA RVL+IM+ DAEKDP P+++HA+LL++QVDRKLVKQTVMTSVYGVTYI Sbjct: 718 KPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYI 777 Query: 1779 GARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIAS 1958 GARDQIKRRLKER I DD QL+ A+ YAAK TL ALEEMF+ AR IM+WLG+CAKVIAS Sbjct: 778 GARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIAS 837 Query: 1959 ENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSL 2138 ENQ V+WTTPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVMV+RQ+TAFPPNFVHSL Sbjct: 838 ENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSL 897 Query: 2139 DGSHMMMTAIACKKAGLNFAGV 2204 DGSHMMMTA+ACK+AGLNFAGV Sbjct: 898 DGSHMMMTAVACKEAGLNFAGV 919 >emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] Length = 1002 Score = 1163 bits (3008), Expect = 0.0 Identities = 565/734 (76%), Positives = 644/734 (87%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPYMKSLFLGWF P RD+I EQ+ GKNRG YA +FD LPA+MMAVITMHKLMGLL Sbjct: 203 NLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLL 262 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKNEGGESDAVAKEKEKL 362 MT G R+VQA+ IGEAIE E RI+ FL+K++ + E D + KE+E+L Sbjct: 263 MTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMM-KERERL 321 Query: 363 RKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 542 RKKV L+KKQKL+QVR IVK QDD KPWGQD KVGCRLI++LMETAYIQPP DQL D Sbjct: 322 RKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDD 381 Query: 543 GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 722 GPPDIRPAF H+LK V +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP + Sbjct: 382 GPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQS 439 Query: 723 WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVFG 902 W YDKG +LFLPS +MRTHG++ QREA+KR P+KQLE VF+AL+TLGNTKWRVN++V G Sbjct: 440 WLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLG 499 Query: 903 VIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDVE 1082 ++++IWA+GGRLADLVDREDVPLP PDTEDEAEIR WKWKVK +KKEN ERHS+RCD+E Sbjct: 500 IVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIE 559 Query: 1083 LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLR 1262 LKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGLR Sbjct: 560 LKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLR 619 Query: 1263 WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVAC 1442 WLKIH+AN+Y GGVDKLSY+GR+AF+ENHL+DIFDSA++PLEG+RWWLGAEDPFQCL C Sbjct: 620 WLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATC 679 Query: 1443 INLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 1622 IN+++ALRS SPET IS+MPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG Sbjct: 680 INIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSG 739 Query: 1623 IAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKR 1802 IAARVL+IM+ DA KDP P+ + ARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIK+ Sbjct: 740 IAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKK 799 Query: 1803 RLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWT 1982 RLKERG IEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA EN V+WT Sbjct: 800 RLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWT 859 Query: 1983 TPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMT 2162 TPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMT Sbjct: 860 TPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 919 Query: 2163 AIACKKAGLNFAGV 2204 AIACK++GL+FAGV Sbjct: 920 AIACKESGLSFAGV 933 >sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial; AltName: Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2B; Flags: Precursor gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum] Length = 1021 Score = 1162 bits (3007), Expect = 0.0 Identities = 558/735 (75%), Positives = 650/735 (88%), Gaps = 1/735 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPY+KSLFLGWF P RD I EQE +GK++ YA+Y LPADMMAVITMHKLMGLL Sbjct: 220 NLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLL 279 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSN-TNKDNKNEGGESDAVAKEKEK 359 MT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ KD + E GE V +E+EK Sbjct: 280 MTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH--VTQEQEK 337 Query: 360 LRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLA 539 LRKKVTNL+KKQKL+ V IV+ QDD KPWGQDA+AKVG RLIELL++TAYIQPP +QLA Sbjct: 338 LRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLA 397 Query: 540 DGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPI 719 PPDIRPAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPMLVPP+ Sbjct: 398 VDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPV 457 Query: 720 NWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRVF 899 WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEAL+TLG+TKWR+NKRV Sbjct: 458 KWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVL 517 Query: 900 GVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCDV 1079 VI +IWA GGRLADLVDR+D PLP +PDTEDEA W+WKVK++KKEN ERHS+RCD+ Sbjct: 518 SVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDI 577 Query: 1080 ELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGL 1259 ELKLAVA KMKDE+GFFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+L FAEGRPLG+SGL Sbjct: 578 ELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGL 637 Query: 1260 RWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVA 1439 RWLKIH+ANL+AGGV+KLS +GRIAFTENH+DDIFDSADKPLEGRRWWL AEDPFQCL Sbjct: 638 RWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAV 697 Query: 1440 CINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYS 1619 CINLS+A+RSSSPET+ISH+P+HQDGSCNGLQHYAALGRD+LGAAAVNLVAG+KPADVYS Sbjct: 698 CINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYS 757 Query: 1620 GIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIK 1799 GIAARVL+IM+ DA++DP +PDA+ AR L++QVDRKLVKQTVMTSVYGVTYIGARDQIK Sbjct: 758 GIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIK 817 Query: 1800 RRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQW 1979 RRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+ V+W Sbjct: 818 RRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRW 877 Query: 1980 TTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMM 2159 TTPLGLPVVQPYR +G HLIKTSLQILTL++ET+KVMV+RQ+TAFPPNF+HSLDGSHMMM Sbjct: 878 TTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMM 937 Query: 2160 TAIACKKAGLNFAGV 2204 TA+AC++AGLNFAGV Sbjct: 938 TAVACRRAGLNFAGV 952 >ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Citrus sinensis] Length = 1026 Score = 1162 bits (3006), Expect = 0.0 Identities = 560/736 (76%), Positives = 646/736 (87%), Gaps = 2/736 (0%) Frame = +3 Query: 3 NLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLL 182 NLPYMKSLFLGWF P RD+I EQE+ R K++ YA YFD LPADMMAVITMHKLMGLL Sbjct: 222 NLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLL 281 Query: 183 MTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTNKDNKN--EGGESDAVAKEKE 356 MT +HG R+VQA+ IG+AIEQEVRI+ FL+K++ NK EG ES+ V E+E Sbjct: 282 MTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQE 341 Query: 357 KLRKKVTNLVKKQKLQQVRHIVKGQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQL 536 KLRKKVT+L+KKQKL VR IVKGQDD KPWGQDA+AKVG R+IELL +TAYIQ P DQL Sbjct: 342 KLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQL 401 Query: 537 ADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPP 716 AD PPDI PAF H+L+ V+K+T ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP Sbjct: 402 ADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPP 461 Query: 717 INWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALNTLGNTKWRVNKRV 896 + WT YDKGAH FLPS VMRTHG++ QR+ +KR P+KQLE VFEAL+TLGNTKWRVN RV Sbjct: 462 VKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRV 521 Query: 897 FGVIHKIWATGGRLADLVDREDVPLPVQPDTEDEAEIRSWKWKVKTLKKENSERHSKRCD 1076 V+ +IW+ GGRLADLVDR DVPLP +P+TEDEA++R W+WKV+ +KKEN ERHS+RCD Sbjct: 522 LSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 581 Query: 1077 VELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSG 1256 +ELKL+VA KMKDE+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSG Sbjct: 582 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 641 Query: 1257 LRWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLV 1436 L WLKIH+ANLYAGGVDKLS++GR+AFTENHLDDIFDSADKPLEGRRWWL AEDPFQCL Sbjct: 642 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 701 Query: 1437 ACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1616 CINL++ALRSSSPET ISH+P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVY Sbjct: 702 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 761 Query: 1617 SGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQI 1796 SGIAARVL I++ DA++DP +PDAL A+LL+SQVDRKLVKQTVMTSVYGVTYIGARDQI Sbjct: 762 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 821 Query: 1797 KRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQ 1976 KRRLKERGA ++++LF AS YAAK+TLTAL EMFQAAR IMSWLG+CAK+IASENQ V+ Sbjct: 822 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 881 Query: 1977 WTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMM 2156 WTTPLGLPVVQPYR LG H +KTSLQILTL+RET+KVMV+RQ+TAFPPNFVHSLDGSHMM Sbjct: 882 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM 941 Query: 2157 MTAIACKKAGLNFAGV 2204 MTA+AC+KAGL FAGV Sbjct: 942 MTAVACRKAGLTFAGV 957