BLASTX nr result
ID: Akebia24_contig00002190
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00002190
(3962 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1490 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1472 0.0
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 1450 0.0
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 1430 0.0
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 1409 0.0
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1407 0.0
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1407 0.0
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1406 0.0
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 1404 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1403 0.0
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1403 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1401 0.0
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 1399 0.0
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1399 0.0
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 1398 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 1397 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 1397 0.0
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 1390 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1383 0.0
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The... 1377 0.0
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1490 bits (3858), Expect = 0.0
Identities = 762/1045 (72%), Positives = 851/1045 (81%), Gaps = 23/1045 (2%)
Frame = +3
Query: 102 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIA-------- 257
M+S +T I SANL +L IS +KP+ +P+ +K TVMWR + K+
Sbjct: 1 MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPL---KKPTVMWRNIAKRAIPRAPRKCV 57
Query: 258 --SSRKLMR------FSQSTIFQE--KTRPFELKNGVNFRSFEMGICQNGKILFGEEDMG 407
S+ L R FSQ IF E K FE + + EMG + G+I E+ +G
Sbjct: 58 YLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVG 117
Query: 408 RPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKI 587
RP F C N +GFSGF PK Y+S VAEAV STD EEDVS DEIQ LL EM KEE +
Sbjct: 118 RPSFGCLRNQMGFSGFC--PKSYAS-VAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQ 174
Query: 588 IELNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNL 767
+ R+ + K GM G+Y LRRRQ+KIET++W+ AAKEYKELL DMCEQKLAPNL
Sbjct: 175 VNFKRREKLKMERGMEQGRYLR--LRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNL 232
Query: 768 PYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMT 947
PYMKSLFLGWF+PL D I +EQELCR GK++ AYAPYFDQLPADMM+VITMHKL+GLLMT
Sbjct: 233 PYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMT 292
Query: 948 GGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVE---VDPVTKEQEK 1118
GG+ GSTRVVQAAC IG+AIE EVRIH VE DPV EQEK
Sbjct: 293 GGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKN--VEGGGFDPVIHEQEK 350
Query: 1119 LRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPV-NQL 1295
LR KVT+LMKKQKLH R IV+G D+ KPWG EA AKVG LIELLM+TAYIQPPV NQL
Sbjct: 351 LRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQL 410
Query: 1296 ADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPP 1475
AD PPDIRPAF+H+ K + + A K GR+ G+IECDPLV++GLE+TARHMVIPY+PMLVPP
Sbjct: 411 ADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPP 470
Query: 1476 INWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRM 1655
+ WTGYDKGA+LFLPSY MRTHGARQQREA+KRAP+ QLE VFEALNTLGNTKWR+NKR+
Sbjct: 471 LKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRL 530
Query: 1656 LDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCD 1835
DV+DRIWA GG LADLVDR DVP+P +PDTEDE +L NSERHSQRCD
Sbjct: 531 FDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCD 590
Query: 1836 VELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSG 2015
+ELKLAVAR+MKDEDGFFYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG+SG
Sbjct: 591 IELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSG 650
Query: 2016 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 2195
L WLKIHLANL+AGGVDKLS++GRI FTENHLDDIFDSADRPLEG+RWWL AEDPFQ LA
Sbjct: 651 LHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLA 710
Query: 2196 VCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVY 2375
CINLSEA RSSSP+ +SH+PVHQDGSCNGLQHYAALGRD+LGA AVNLVAGEKPADVY
Sbjct: 711 ACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVY 770
Query: 2376 SGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQI 2555
SGIAARVL+IM++DAEKDP + P+ALRAR+LIN VDRKLVKQTVMTSVYGVTYIGARDQI
Sbjct: 771 SGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQI 830
Query: 2556 KRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVR 2732
KRRLKERNA+ D+ ELFGAACYAAK TLTALGEMFQAARSIMSWLGDCAK+IASENQPVR
Sbjct: 831 KRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVR 890
Query: 2733 WTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMM 2912
WTTP GLPVVQPYR+LGRHLIKTSLQVLTL+R+T+ IMVKRQRTAFPPNFVHSLDGSHMM
Sbjct: 891 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMM 950
Query: 2913 MTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPT 3092
MTA+AC KAGLNFAGVHDSYWTHACDVD MNR+LREKFV+LYETPILENLLESFQQSFP
Sbjct: 951 MTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPA 1010
Query: 3093 LTFPPFPERGDFDLKEVLESPYFFN 3167
L FPP PERGDFDL+EVLESPYFFN
Sbjct: 1011 LEFPPLPERGDFDLREVLESPYFFN 1035
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1472 bits (3810), Expect = 0.0
Identities = 737/992 (74%), Positives = 826/992 (83%), Gaps = 12/992 (1%)
Frame = +3
Query: 228 MWRRVVKQIASSRKLMRFSQSTIFQ-----------EKTRPFELKNGVNFRSFEMGICQN 374
MWR + K A +R+L SQ + F +K R E ++ VN G+ +
Sbjct: 1 MWRNLAKH-AYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59
Query: 375 GKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVL 554
G + F ++++GRPGF P+ F G + KGY+S+ AEA+ S EED+S VDE+Q L
Sbjct: 60 GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASA-AEAIAS---EEDMSGVDEVQEL 115
Query: 555 LEEMSKEENKIIELNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLA 734
+EE++K + + QPK +GG+ GK+ +LRRRQ+K+ET++W++AAKEY+ELL+
Sbjct: 116 VEEVNKGDKL------EKQPKLIGGVAQGKHN--VLRRRQIKMETEAWEEAAKEYRELLS 167
Query: 735 DMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVI 914
DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC+QGK+R AYAPYFD LPADMMAVI
Sbjct: 168 DMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVI 227
Query: 915 TMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVD 1094
TMHKLMGLLMTG GS RVVQAACHIGEAIEHEVRI +
Sbjct: 228 TMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGS-N 286
Query: 1095 PVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYI 1274
PVTKEQEKLR KV+ LMKKQKL QVR IV+ QDD KPWGQ+A+ KVG LIELL+ TAYI
Sbjct: 287 PVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYI 346
Query: 1275 QPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPY 1454
QPP +QL DGPPDIRPAF+H+LK + K K R+ G+IECDPLVR+GLEKTARHMVIPY
Sbjct: 347 QPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 406
Query: 1455 MPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTK 1634
MPMLVPP+NWTGYDKGAYLFLPSY MR HGARQQREAIKRAP+K LE FEALNTLGNTK
Sbjct: 407 MPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTK 466
Query: 1635 WRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSE 1814
WR+NKR+L VIDRIWASGGRLADLVDREDVP+P EPDTEDE E+ +NSE
Sbjct: 467 WRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSE 526
Query: 1815 RHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 1994
RHSQRCD+ELKLAVAR+MKDEDGFFYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEG
Sbjct: 527 RHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 586
Query: 1995 RPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAE 2174
RPLG SGLRWLKIHLAN+YAGGVDKLSY+GR+AFTENHL+DIFDSADRPLEGRRWWL AE
Sbjct: 587 RPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAE 646
Query: 2175 DPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 2354
DPFQCLA CINLSEA RSSSP+ +SHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG
Sbjct: 647 DPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 706
Query: 2355 EKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTY 2534
EKPADVYSGIAARVL+IM++DA+KDP +PNALRARLLI+ VDRKLVKQTVMTSVYGVTY
Sbjct: 707 EKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTY 766
Query: 2535 IGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIA 2711
IGARDQIKRRLKER A+ DE E+F A+CYAAKTTLTALGEMF+AARSIMSWLGDCAKVIA
Sbjct: 767 IGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIA 826
Query: 2712 SENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHS 2891
SEN PVRW TP GLPVVQPYR+LGRHLIKTSLQVL+L+R+TDK+MVKRQRTAFPPNFVHS
Sbjct: 827 SENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHS 886
Query: 2892 LDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLES 3071
LDGSHMMMTAVAC KAGLNFAGVHDSYWTHACDVD MNRILREKFVELY PILENLLE
Sbjct: 887 LDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEG 946
Query: 3072 FQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
FQ+SFPTL FPP PERGDFDL+EVLESPYFFN
Sbjct: 947 FQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1450 bits (3754), Expect = 0.0
Identities = 723/1010 (71%), Positives = 822/1010 (81%), Gaps = 30/1010 (2%)
Frame = +3
Query: 228 MWRRVVKQIAS--------------SRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEMGI 365
MWR + KQ+AS S M FSQ + F +K R FE + +N R MG
Sbjct: 1 MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60
Query: 366 CQNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEI 545
Q G + +E++GR P G SGF N+ KGY+S VAEA+ STD EED S +EI
Sbjct: 61 RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYAS-VAEAIASTDGEEDSSGSEEI 119
Query: 546 QVLLEEMSKEENKIIELNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKE 725
Q +LE++ +E N ++E + + + V GMG+GKY LLR+RQ+K+ET++W +AAKEY+E
Sbjct: 120 QEMLEDLIRENN-MVESHFKQPKRVVVGMGVGKYN--LLRKRQIKLETEAWQEAAKEYQE 176
Query: 726 LLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMM 905
LLADMCEQKLAPNLPY+KSLFLGWF+PL D IA +Q+ C+Q R ++APYFD LPAD M
Sbjct: 177 LLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKM 236
Query: 906 AVITMHKLMGLLMT-GGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXX 1082
AVITMHKLMGLLMT G GS RVVQAAC IGEAIEHEVRIH
Sbjct: 237 AVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAE 296
Query: 1083 VEVDPV--------------TKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEA 1220
+ PV TKEQE+LR KV L+K+QK+ QVR IV+ Q+D+KPWGQEA
Sbjct: 297 ADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEA 356
Query: 1221 HAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECD 1400
H KVGC LI+LLM TAYIQPPV+Q+ DGPPDIRPAF+H+LK I + KT R+ G+IECD
Sbjct: 357 HVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECD 416
Query: 1401 PLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAP 1580
P+VR+G+EKTARHMV+PYMPMLVPPINWTGYD+GAYLFLPSY MRTHGA+QQRE +KR P
Sbjct: 417 PIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTP 476
Query: 1581 QKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEP 1760
+KQLE VFEAL+TLG+TKWRVNKR+L VIDRIWASGGRLADLVDREDVP+P EPDTEDE
Sbjct: 477 RKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEA 536
Query: 1761 ELXXXXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPY 1940
E+ +NSERHSQRCD+ELKLA +R+MKDE+GF+YPHN+DFRGRAYPMHPY
Sbjct: 537 EIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPY 596
Query: 1941 LNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDI 2120
LNHLGSD+CRGILEF+EGR LG SGLRWLKIHLANLYAGGVDKLS+D R AFTENH+D+I
Sbjct: 597 LNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEI 656
Query: 2121 FDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHY 2300
FDSADRPLEGRRWWLGAEDPFQCLA CINL EA RS SP+ +S+MPVHQDGSCNGLQHY
Sbjct: 657 FDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHY 716
Query: 2301 AALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHV 2480
AALGRDKLGAAAVNLV G+KPADVYSGIAARVL+IMR DAEKDP +PNAL ARLLIN V
Sbjct: 717 AALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQV 776
Query: 2481 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMF 2657
DRKLVKQTVMTSVYGVTY+GARDQIKRRLKER ++ D+ LF AACYAA+TTLTALGEMF
Sbjct: 777 DRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMF 836
Query: 2658 QAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTD 2837
+AARSIMSWLG+CAKVIASENQPVRW TP GLPVVQPYRQLGRHLIKTSLQVLTL+R+TD
Sbjct: 837 EAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETD 896
Query: 2838 KIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILR 3017
K+MVKRQRTAFPPNFVHSLDGSHMMMTAVAC KAGLNFAGVHDSYWTHACD+D MNRILR
Sbjct: 897 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILR 956
Query: 3018 EKFVELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
EKFVELYE PILENLLE FQQSFPTLTFPP P+RGDFDL++VLESPYFFN
Sbjct: 957 EKFVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 1430 bits (3702), Expect = 0.0
Identities = 721/1037 (69%), Positives = 824/1037 (79%), Gaps = 15/1037 (1%)
Frame = +3
Query: 102 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRK---- 269
M+ +T + AN++ F S +IFH S ST +WR KQ S ++
Sbjct: 1 MSRSQTPLSPANISKNFTFH------SPLIFHKNPS-MISTTVWRNFAKQAISRKQRFHI 53
Query: 270 ----------LMRFSQSTIFQEKTRPFELKNGVNFRSFEMGICQNGKILFGEEDMGRPGF 419
L+ Q ++F +PFEL + + R E+G G I E+ M +P F
Sbjct: 54 NSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSF 113
Query: 420 RCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIELN 599
NPI F+GF PKGY+S VAEAV STD EE+VSVVDE+Q LL++MS EE + +
Sbjct: 114 WSVRNPIWFNGFC--PKGYAS-VAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYK 170
Query: 600 RQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMK 779
++ + GMG GKY +L+RRQ+KIET++W++AAKEY+EL+ DMCEQKLAPNLPYMK
Sbjct: 171 QRTRQNRARGMGQGKYH--MLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMK 228
Query: 780 SLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDP 959
SLFLGWF+PL + I +EQ+LCR+GK++ AYAPY DQLPADMM+VITMHKLMGLLMTGG+
Sbjct: 229 SLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEH 288
Query: 960 GSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVTD 1139
G+ RVV AAC IGEAIE EVRIH E D KE+EKL KVT+
Sbjct: 289 GTCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENG-ESDAAKKEREKLNKKVTN 347
Query: 1140 LMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIR 1319
LMKKQKL VR IV D K W EA AKVG LIELL +TA+IQPP +QLADGPPDIR
Sbjct: 348 LMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIR 407
Query: 1320 PAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDK 1499
PAF+H+ + + K A R+ G+IECDPLV +GLEKTARHMVIPYMPMLVPP+NWTGYDK
Sbjct: 408 PAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDK 467
Query: 1500 GAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIW 1679
G Y FLPSY MR HGARQQREAIKR P++QLE VF+AL+ LGNT+WRVNKR+L V+DRIW
Sbjct: 468 GGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIW 527
Query: 1680 ASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAVA 1859
ASGG LADLVDR DVP+P EPDTEDE L +N ERHSQRCD ELKLAVA
Sbjct: 528 ASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVA 587
Query: 1860 RQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHL 2039
R+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSD+CRGILEF EGRPLG SGL WLKIHL
Sbjct: 588 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHL 647
Query: 2040 ANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEA 2219
ANLYAGGVDKLS +GRIAFTENHLDDIFDS D+PLEGRRWWL AEDPFQCLAVCINL+EA
Sbjct: 648 ANLYAGGVDKLSLEGRIAFTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEA 707
Query: 2220 FRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVL 2399
RSSSP+ +SH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLV GEKPADVYSGIA RVL
Sbjct: 708 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVL 767
Query: 2400 EIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERN 2579
EIMR+DA+KDPVV P ALRA+LLIN VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 768 EIMRRDAQKDPVVFPEALRAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 827
Query: 2580 ALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLP 2756
++ D+ E+FG ACYAAK TLTALGEMF+AAR IMSWLG+CAK+IASENQPVRWTTP GLP
Sbjct: 828 SISDDAEIFGCACYAAKITLTALGEMFEAARGIMSWLGECAKIIASENQPVRWTTPLGLP 887
Query: 2757 VVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNK 2936
VVQPYR+ GRHLIKTSLQVLTL+R+T+K+MVKRQRTAFPPNFVHSLD SHMMMTA+AC K
Sbjct: 888 VVQPYRKFGRHLIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDSSHMMMTAIACKK 947
Query: 2937 AGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPPFPE 3116
AGL+FAGVHDSYWTHACDVD MN+ILREKFV+LYETPILENLLESFQQSFP LTFPP PE
Sbjct: 948 AGLSFAGVHDSYWTHACDVDEMNKILREKFVQLYETPILENLLESFQQSFPALTFPPLPE 1007
Query: 3117 RGDFDLKEVLESPYFFN 3167
RGDFDL++VLESPYFFN
Sbjct: 1008 RGDFDLRDVLESPYFFN 1024
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 1409 bits (3648), Expect = 0.0
Identities = 702/997 (70%), Positives = 814/997 (81%), Gaps = 17/997 (1%)
Frame = +3
Query: 228 MWRRVVKQIASSRKLMRFSQS---------------TIFQEKTRPFELKNGVNFRSFEMG 362
MWR + KQ + R FS+S +IF E P +L++ +N E+G
Sbjct: 1 MWRNLSKQ-SYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELG 59
Query: 363 ICQNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDE 542
+ + P + + F G + +GY+++ AEA+ ST EE VDE
Sbjct: 60 FRRALVFWRPPREASCPNYAISSHTFRFFGST---RGYAAA-AEALVSTSEEE----VDE 111
Query: 543 IQVLLEEMSKEEN-KIIELNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEY 719
+Q L+EE++KE N K + Q QPK VGGMGLGKY LRRRQ+KIET++W+ AAKEY
Sbjct: 112 LQELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNS--LRRRQIKIETEAWENAAKEY 169
Query: 720 KELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPAD 899
+ELL DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC++GK+RGAYAPYFDQLPA+
Sbjct: 170 QELLEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAE 229
Query: 900 MMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXX 1079
MMAVITMHKLMGLLMTGG GS RVVQAACHIGEAIEHEVRIH
Sbjct: 230 MMAVITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSE 289
Query: 1080 XVEVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLM 1259
DP KEQ++LR KV LMKKQK+ QVR IVR QDD+KPWGQ+A KVGC LI++L
Sbjct: 290 EGP-DPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILT 348
Query: 1260 RTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARH 1439
+TAYIQPPV+Q DG PDIRPAF+H+LK ++ +K R+ G+IECDPLVR+G+EKTARH
Sbjct: 349 QTAYIQPPVDQRDDGAPDIRPAFVHTLKCVE--TLKGSRRYGVIECDPLVRKGMEKTARH 406
Query: 1440 MVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNT 1619
MVIPYMPMLVPP+NWTGY++GAYLFLPSY MRTHGA+QQREA+KR P+++LE +F+ALNT
Sbjct: 407 MVIPYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNT 466
Query: 1620 LGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXX 1799
LGNTKWRVNKR+L V+DRIWA+GGRLADLVDRED+P+P EPDTEDE E+
Sbjct: 467 LGNTKWRVNKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVK 526
Query: 1800 XQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 1979
NSERHSQRCD+ELKLAVAR++K+E+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGIL
Sbjct: 527 KVNSERHSQRCDIELKLAVARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 586
Query: 1980 EFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRW 2159
EFAEGRPLG SGL+WLK+HLANLY GGVDK SYDGRI+FTENH++DIFDSADRPLEG+RW
Sbjct: 587 EFAEGRPLGKSGLQWLKVHLANLYGGGVDKFSYDGRISFTENHMEDIFDSADRPLEGKRW 646
Query: 2160 WLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAV 2339
WLGAEDPFQCLA C++L+EA RS P+ VS++PVHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 647 WLGAEDPFQCLATCMSLTEALRSPYPESTVSYIPVHQDGSCNGLQHYAALGRDKLGAAAV 706
Query: 2340 NLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSV 2519
NLVAG+KPADVYSGIAARVL+IM++DA KDP DPN +RARLLIN VDRKLVKQTVMTSV
Sbjct: 707 NLVAGDKPADVYSGIAARVLDIMKRDAAKDPADDPNVMRARLLINQVDRKLVKQTVMTSV 766
Query: 2520 YGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDC 2696
YGVTYIGARDQIKRRLKER ++ D+ ELF ACYAAKTTLTALGEMF+AARSIMSWLGDC
Sbjct: 767 YGVTYIGARDQIKRRLKERASMEDDTELFACACYAAKTTLTALGEMFEAARSIMSWLGDC 826
Query: 2697 AKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPP 2876
AK+IA+EN PVRWTTP GLPVVQPYR+LGRH+IKTSLQVLTL+R+TDK+M KRQRTAFPP
Sbjct: 827 AKIIATENHPVRWTTPLGLPVVQPYRKLGRHMIKTSLQVLTLQRETDKVMAKRQRTAFPP 886
Query: 2877 NFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILE 3056
NFVHSLDGSHMMMTA+AC++AGL+FAGVHDSYWTHACDVD MN ILREKFVELYE PILE
Sbjct: 887 NFVHSLDGSHMMMTAIACSEAGLSFAGVHDSYWTHACDVDKMNEILREKFVELYEAPILE 946
Query: 3057 NLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
NLL+ FQQSFP L FPP PERGDFDL+EVL+S YFFN
Sbjct: 947 NLLDGFQQSFPKLKFPPLPERGDFDLREVLDSTYFFN 983
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 1407 bits (3642), Expect = 0.0
Identities = 715/1005 (71%), Positives = 814/1005 (80%), Gaps = 25/1005 (2%)
Frame = +3
Query: 228 MWRRVVKQIASSRKLMRFSQSTIFQ-----EKTRPFELKNGVNFRSFEMGICQ------- 371
MWR + KQ A SRKL S KTRP + +R+ +G+ Q
Sbjct: 1 MWRYISKQ-AYSRKLRNTHDSDFLGFAQSFGKTRPLQGLCEEIYRNPNLGVSQSSIFTRV 59
Query: 372 NGK--ILFGE-EDMGRPGFRCFPNPIGFSGFSNHPKGYSS--------SVAEAVPSTDTE 518
NGK L G ED R + F FS + S S AEA+ ST E
Sbjct: 60 NGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGILRSYGSAAEAIASTSEE 119
Query: 519 EDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVGGMGLGKYQYQLLRRRQMKIETQS 695
+ +DEIQ L+EEM+KE N+ ++ N Q QPK VGGMG+GKY LLRRRQ+K+ET++
Sbjct: 120 D----IDEIQELIEEMNKE-NEALKTNLQPKQPKTVGGMGIGKYN--LLRRRQIKVETEA 172
Query: 696 WDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAP 875
W+ AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC +GK+RGAYAP
Sbjct: 173 WEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAP 232
Query: 876 YFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXX 1055
+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 233 FFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKN 292
Query: 1056 XXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVG 1235
+ KE+E+LR KV LMKKQKL QVR IV+ QDD KPWGQ+ KVG
Sbjct: 293 ALDGSLEETA--GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVG 350
Query: 1236 CHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQ 1415
C LI++L+ TAYIQPP +QL D PPDIRPAF+H+LK ++ +K R+ G+I+CDPLVR+
Sbjct: 351 CKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVE--TVKGSRRYGVIQCDPLVRK 408
Query: 1416 GLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLE 1595
GL+KTARHMVIPYMPMLVPP NW+GYD+GAYLFLPSY MRTHGA+QQREA+KR P+KQLE
Sbjct: 409 GLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 468
Query: 1596 HVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXX 1775
VF+AL+TLGNTKWRVNKR+L ++DRIWASGGRLADLVDREDVP+P EPDTEDE E+
Sbjct: 469 PVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKW 528
Query: 1776 XXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLG 1955
+N ERHSQRCD+ELKLAVAR+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLG
Sbjct: 529 KWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 588
Query: 1956 SDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSAD 2135
SDLCRGILEF+EGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR AF+ENH++DIFDSAD
Sbjct: 589 SDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSAD 648
Query: 2136 RPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGR 2315
RPLEGRRWWLGAEDPFQCLA CIN+SEA RS SP+ ++SHMP+HQDGSCNGLQHYAALGR
Sbjct: 649 RPLEGRRWWLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGR 708
Query: 2316 DKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLV 2495
DKLGAAAVNLVAG+KPADVYSGIAARVL+IM++DA+KDP DPN +RARLLIN VDRKLV
Sbjct: 709 DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLV 768
Query: 2496 KQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARS 2672
KQTVMTSVYGVTYIGARDQIKRRLKER A+ D+ ELF AACYAAKTTLTALGEMF+AARS
Sbjct: 769 KQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARS 828
Query: 2673 IMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVK 2852
IMSWLGDCAK+IA ENQPVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R+TDK+MVK
Sbjct: 829 IMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 888
Query: 2853 RQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVE 3032
RQRTAFPPNFVHSLDGSHMMMTA+ C +AGL+FAGVHDSYWTHA DVD MN+ILREKFVE
Sbjct: 889 RQRTAFPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVE 948
Query: 3033 LYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
LY+ PILENLLESFQQSFP L FPP PERGDFDL+EVLESPYFFN
Sbjct: 949 LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1407 bits (3642), Expect = 0.0
Identities = 712/1038 (68%), Positives = 826/1038 (79%), Gaps = 16/1038 (1%)
Frame = +3
Query: 102 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRKLMRF 281
M+S +T I N+F DKP+ + +P + S +MWR ++KQ++S R
Sbjct: 1 MSSTKTPISLTIKLNQFT-----DKPTGLDINPYHN---SPIMWRNIIKQLSS-----RT 47
Query: 282 SQSTIFQEKTRPFEL---------KNGVNFRSFEMGICQNGKILFGEEDMGR--PGFRCF 428
Q +F K R + K+ FRS C N I+ G +++G PG
Sbjct: 48 PQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN--IVMGFQNLGEYLPGDEFL 105
Query: 429 PNPIGFSGFSNH---PKGYSS-SVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIEL 596
P+ + +N+ K Y+S + A AV STD EEDVSVVDE+ LL E+ KEE K
Sbjct: 106 SRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAF 165
Query: 597 NRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYM 776
R+ Q GMG KYQ L+RRQ+K+ET++W+QAAKEYKELL DMCEQKLAPNLPY+
Sbjct: 166 RRRKQRMLTSGMGHRKYQ--TLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYV 223
Query: 777 KSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGD 956
KSLFLGWF+PL D IA+EQELC QGK + AYA YF QLPADMMAVITMHKLMGLLMTGGD
Sbjct: 224 KSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGD 283
Query: 957 PGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVT 1136
G+ RVVQAA IG+AIE EVRIH + + VT+EQEKLR KVT
Sbjct: 284 HGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE-DGEHVTQEQEKLRKKVT 342
Query: 1137 DLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDI 1316
+LMKKQKL V IVR QDD KPWGQ+A AKVG LI+LL++TAYIQPP NQLA PPDI
Sbjct: 343 NLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDI 402
Query: 1317 RPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYD 1496
RPAF+HS++ + K R+ GII+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGYD
Sbjct: 403 RPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYD 462
Query: 1497 KGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRI 1676
KG +L+LPSY MRTHGARQQREA+KRA + QL+ VFEAL+TLGNTKWR+NKR+L V+DRI
Sbjct: 463 KGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRI 522
Query: 1677 WASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAV 1856
WA GGRLADLVDR+D P+P EPDTEDE +N ERHSQRCD+ELKLAV
Sbjct: 523 WAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAV 582
Query: 1857 ARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIH 2036
AR+MKDE+ FFYPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPLG SGLRWLKIH
Sbjct: 583 ARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIH 642
Query: 2037 LANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSE 2216
LANL+AGGV+KLS +GRI FTENH+DDIFDS+D+PLEGRRWWL AEDPFQCLAVCINLSE
Sbjct: 643 LANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSE 702
Query: 2217 AFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARV 2396
A RSSSP+ +VSH+PVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARV
Sbjct: 703 AVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARV 762
Query: 2397 LEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 2576
L+IM++DA++DP P+A+RAR+L+N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 763 LDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 822
Query: 2577 NALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGL 2753
A+ D+ ELFGAACYAAK TLTALGEMF+AARSIM+WLG+CAK+IASEN+PVRWTTP GL
Sbjct: 823 GAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGL 882
Query: 2754 PVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACN 2933
PVVQPYR++GRHLIKTSLQ+LTL+R+T+K+MVKRQRTAFPPNF+HSLDGSHMMMTAVAC
Sbjct: 883 PVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACR 942
Query: 2934 KAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPPFP 3113
+AGLNFAGVHDSYWTHACDVD +NRILREKFVELYE PILE LLESFQ S+PTL FPP P
Sbjct: 943 RAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLP 1002
Query: 3114 ERGDFDLKEVLESPYFFN 3167
ERGDFD+++VLESPYFFN
Sbjct: 1003 ERGDFDMRDVLESPYFFN 1020
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1406 bits (3639), Expect = 0.0
Identities = 713/1040 (68%), Positives = 822/1040 (79%), Gaps = 18/1040 (1%)
Frame = +3
Query: 102 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRKLMRF 281
M+S +T I N+F DKP+ + I+ S +MWR ++KQ++S R
Sbjct: 1 MSSTKTPISLTIKLNQFT-----DKPTGL---DINRYHNSPIMWRNIIKQLSS-----RT 47
Query: 282 SQSTIFQEKTRPFEL---------KNGVNFRSFEMGICQN--------GKILFGEEDMGR 410
Q +F K R + K+ FRS C N G+ L G+E + R
Sbjct: 48 PQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSR 107
Query: 411 PGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKII 590
P + N + + F S + A AV STD EEDVSVVDE+Q LL E+ KEE K
Sbjct: 108 PLLK---NQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQF 164
Query: 591 ELNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLP 770
R+ Q GMG KYQ L+RRQ+K+ET++W+QAAKEYKELL DMCEQKLAPNLP
Sbjct: 165 AFRRRKQRMLTSGMGHRKYQ--TLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLP 222
Query: 771 YMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTG 950
Y+KSLFLGWF+PL D IA+EQELC QGK + AYA Y QLPADMMAVITMHKLMGLLMTG
Sbjct: 223 YVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTG 282
Query: 951 GDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHK 1130
GD G+ RVVQAA IG+AIE EVRIH + + VT+EQEKLR K
Sbjct: 283 GDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE-DGEHVTQEQEKLRKK 341
Query: 1131 VTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPP 1310
VT+LMKKQKL V IVR QDD KPWGQ+A AKVG LIELL++TAYIQPP NQLA PP
Sbjct: 342 VTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPP 401
Query: 1311 DIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTG 1490
DIRPAF+HS++ + K R+ GII+CD LV +GLE+TARHMVIPYMPMLVPP+ WTG
Sbjct: 402 DIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTG 461
Query: 1491 YDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVID 1670
YDKG +L+LPSY MRTHGARQQREA+KRA + QL+ VFEAL+TLG+TKWR+NKR+L VID
Sbjct: 462 YDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVID 521
Query: 1671 RIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKL 1850
RIWA GGRLADLVDR+D P+P EPDTEDE +N ERHSQRCD+ELKL
Sbjct: 522 RIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKL 581
Query: 1851 AVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLK 2030
AVAR+MKDE+GFFYPHNVDFRGRAYPMHP+LNHLGSD+CRG+L FAEGRPLG SGLRWLK
Sbjct: 582 AVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLK 641
Query: 2031 IHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINL 2210
IHLANL+AGGV+KLS +GRIAFTENH+DDIFDSAD+PLEGRRWWL AEDPFQCLAVCINL
Sbjct: 642 IHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINL 701
Query: 2211 SEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAA 2390
SEA RSSSP+ ++SH+PVHQDGSCNGLQHYAALGRD+LGAAAVNLVAGEKPADVYSGIAA
Sbjct: 702 SEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAA 761
Query: 2391 RVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 2570
RVL+IM++DA++DP P+A+RAR L+N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLK
Sbjct: 762 RVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 821
Query: 2571 ERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPY 2747
ER A+ D+ ELFGAACYAAK TLTALGEMF+AARSIM+WLG+CAK+IASEN+PVRWTTP
Sbjct: 822 ERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPL 881
Query: 2748 GLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVA 2927
GLPVVQPYR++GRHLIKTSLQ+LTL+++T+K+MVKRQRTAFPPNF+HSLDGSHMMMTAVA
Sbjct: 882 GLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVA 941
Query: 2928 CNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPP 3107
C +AGLNFAGVHDSYWTHACDVD +NRILREKFVELYETPILE LLESFQ S+PTL FPP
Sbjct: 942 CRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPP 1001
Query: 3108 FPERGDFDLKEVLESPYFFN 3167
PERGDFDL++VLESPYFFN
Sbjct: 1002 LPERGDFDLRDVLESPYFFN 1021
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1404 bits (3633), Expect = 0.0
Identities = 710/1038 (68%), Positives = 825/1038 (79%), Gaps = 16/1038 (1%)
Frame = +3
Query: 102 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRKLMRF 281
M+S +T I N+F DKP+ + +P + S +MWR ++KQ++S R
Sbjct: 1 MSSTKTPISLTIKLNQFT-----DKPTGLDINPYHN---SPIMWRNIIKQLSS-----RT 47
Query: 282 SQSTIFQEKTRPFEL---------KNGVNFRSFEMGICQNGKILFGEEDMGR--PGFRCF 428
Q +F K R + K+ FRS C N I+ G +++G PG
Sbjct: 48 PQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN--IVMGFQNLGEYLPGDEFL 105
Query: 429 PNPIGFSGFSNH---PKGYSS-SVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIEL 596
P+ + +N+ K Y+S + A AV STD EEDVSVVDE+ LL E+ KEE K
Sbjct: 106 SRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAF 165
Query: 597 NRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYM 776
R+ Q GMG KYQ L+RRQ+K+ET++W+QAAKEYKELL DMCEQKLAPNLPY+
Sbjct: 166 RRRKQRMLTSGMGHRKYQ--TLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYV 223
Query: 777 KSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGD 956
KSLFLGWF+PL D IA+EQELC QGK + AYA YF QLPADMMAVITMHKLMGLLMTGGD
Sbjct: 224 KSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGD 283
Query: 957 PGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVT 1136
G+ RVVQAA IG+AIE EVRIH + + VT+EQEKLR KVT
Sbjct: 284 HGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE-DGEHVTQEQEKLRKKVT 342
Query: 1137 DLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDI 1316
+LMKKQKL V IVR QDD KPWGQ+A AKVG LI+LL++TAYIQPP NQLA PPDI
Sbjct: 343 NLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDI 402
Query: 1317 RPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYD 1496
PAF+HS++ + K R+ GII+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGYD
Sbjct: 403 PPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYD 462
Query: 1497 KGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRI 1676
KG +L+LPSY MRTHGARQQREA+KRA + QL+ VFEAL+TLGNTKWR+NKR+L V+DRI
Sbjct: 463 KGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRI 522
Query: 1677 WASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAV 1856
WA GGRLADLVDR+D P+P EPDTEDE L +N ERHSQRCD+ELKLAV
Sbjct: 523 WAGGGRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAV 582
Query: 1857 ARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIH 2036
AR+MKDE+ FFYPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPLG SGLRWLKIH
Sbjct: 583 ARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIH 642
Query: 2037 LANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSE 2216
LANL+AGGV+KLS +GRI FTENH+DDIFDS+D+PLEGRRWWL AEDPFQCLAVCINLSE
Sbjct: 643 LANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSE 702
Query: 2217 AFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARV 2396
A RSSSP+ +VSH+PVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPA+ YSGIAARV
Sbjct: 703 AVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARV 762
Query: 2397 LEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 2576
L+IM++DA++DP P+A+RAR+L+N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 763 LDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 822
Query: 2577 NALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGL 2753
A+ D+ ELFGAACYAAK TLTALGEMF+AARSIM+WLG+CAK+IASEN+PVRWTTP GL
Sbjct: 823 GAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGL 882
Query: 2754 PVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACN 2933
PVVQPYR++GRHLIKTSLQ+LTL+R+T+K+MVKRQRTAFPPNF+HSLDGSHMMMTAVAC
Sbjct: 883 PVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACR 942
Query: 2934 KAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPPFP 3113
+AGLNFAGVHDSYWTHACDVD +NRILREKFVELYE PILE LLESFQ S+PTL FPP P
Sbjct: 943 RAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLP 1002
Query: 3114 ERGDFDLKEVLESPYFFN 3167
ERGDFD+++VLESPYFFN
Sbjct: 1003 ERGDFDMRDVLESPYFFN 1020
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 1403 bits (3631), Expect = 0.0
Identities = 712/1005 (70%), Positives = 813/1005 (80%), Gaps = 25/1005 (2%)
Frame = +3
Query: 228 MWRRVVKQIASSRKLMRFSQSTIFQ-----EKTRPFELKNGVNFRSFEMGICQ------- 371
MWR + KQ+ S RKL S KTRP + +R+ +G+ Q
Sbjct: 1 MWRYISKQVYS-RKLRNTHDSDFLGFAQSFRKTRPLQGLCEEGYRNPNLGVSQSSIFSRV 59
Query: 372 NGK--ILFGE-EDMGRPGFRCFPNPIGFSGFSNHPKGYSS--------SVAEAVPSTDTE 518
NGK L G ED R + F FS + S S AEA+ ST E
Sbjct: 60 NGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGVLRSYGSAAEAIASTSEE 119
Query: 519 EDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVGGMGLGKYQYQLLRRRQMKIETQS 695
+ +DEIQ L+EEM+KE N+ ++ N Q QPK VGGMG+GKY LLRRRQ+K+ET++
Sbjct: 120 D----IDEIQELIEEMNKE-NEALKTNLQPKQPKTVGGMGIGKYN--LLRRRQIKVETEA 172
Query: 696 WDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAP 875
W+ AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC +GK+RGAYAP
Sbjct: 173 WEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAP 232
Query: 876 YFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXX 1055
+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 233 FFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKN 292
Query: 1056 XXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVG 1235
+ KE+E+LR KV LMKKQKL QVR IV+ QDD KPWGQ+ KVG
Sbjct: 293 ALDGSLEETA--GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVG 350
Query: 1236 CHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQ 1415
C LI++L+ TAYIQPP +QL D PPDIRPAF+H+LK + +K R+ G+I+CDPLVR+
Sbjct: 351 CRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTVD--TVKGSRRYGVIQCDPLVRK 408
Query: 1416 GLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLE 1595
GL+KTARHMVIPYMPMLVPP NW+GYD+GAYLFLPSY MRTHGA+QQREA+KR P+KQLE
Sbjct: 409 GLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 468
Query: 1596 HVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXX 1775
VF+AL+TLGNTKWRVNKR+L ++DRIWASGGRLADLVDREDVP+P EPDTE+E E+
Sbjct: 469 PVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKW 528
Query: 1776 XXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLG 1955
+N ERHSQRCD+ELKLAVAR+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLG
Sbjct: 529 KWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 588
Query: 1956 SDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSAD 2135
SDLCRGILEF+EGRPLG SGLRWLKIHLAN+Y GGVDKLS +GR AF+ENH++DIFDSAD
Sbjct: 589 SDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSAD 648
Query: 2136 RPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGR 2315
RPLEGRRWWLGAEDPFQCLA CI++SEA RS SP+ ++SHMP+HQDGSCNGLQHYAALGR
Sbjct: 649 RPLEGRRWWLGAEDPFQCLATCISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGR 708
Query: 2316 DKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLV 2495
DKLGAAAVNLVAG+KPADVYSGIAARVL+IM++DA+KDP DPN +RARLLIN VDRKLV
Sbjct: 709 DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLV 768
Query: 2496 KQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARS 2672
KQTVMTSVYGVTYIGARDQIKRRLKER A+ D+ ELF AACYAAKTTLTALGEMF+AARS
Sbjct: 769 KQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARS 828
Query: 2673 IMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVK 2852
IMSWLGDCAK+IA ENQPVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R+TDK+MVK
Sbjct: 829 IMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 888
Query: 2853 RQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVE 3032
RQRTAFPPNFVHSLDGSHMMMTA+AC +AGL+FAGVHDSYWTHA DVD MN+ILREKFVE
Sbjct: 889 RQRTAFPPNFVHSLDGSHMMMTAIACKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVE 948
Query: 3033 LYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
LY+ PILENLLESFQQSFP L FPP PERGDFDL+EVLESPYFFN
Sbjct: 949 LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 1403 bits (3631), Expect = 0.0
Identities = 696/967 (71%), Positives = 802/967 (82%), Gaps = 5/967 (0%)
Frame = +3
Query: 282 SQSTIFQEKTRPFELKNGV---NFRSFEMGICQNGKILFGEEDMGRPGFRCFPNPIGFSG 452
SQ++IF +R G+ + ++ +G+ QN + D G R SG
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRG-------SG 106
Query: 453 FSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVGG 629
+ Y S+ AEA+ ST E+ +DEIQ L+EEM KE N+ ++ N Q QPK +GG
Sbjct: 107 SLGRLRSYGSA-AEAIVSTSEED----IDEIQELIEEMDKE-NEALKANLQPKQPKTIGG 160
Query: 630 MGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPL 809
MG+GKY + LRRRQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL
Sbjct: 161 MGVGKYNF--LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPL 218
Query: 810 CDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAAC 989
D IA EQ+LC +GK+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA
Sbjct: 219 RDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAAS 278
Query: 990 HIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQV 1169
+IGEAIEHE RIH D + KE+E+LR KV LMKKQKL QV
Sbjct: 279 YIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD-MMKERERLRKKVKILMKKQKLRQV 337
Query: 1170 RLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMI 1349
R IV+ QDD KPWGQ+ KVGC LI++LM TAYIQPP +QL DGPPDIRPAF+H+LK +
Sbjct: 338 RKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV 397
Query: 1350 KKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYC 1529
+ MK R+ G+I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKG YLFLPSY
Sbjct: 398 E--TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 1530 MRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLV 1709
MRTHGA+QQREA+KR P+KQLE VF+AL+TLGNTKWRVN+++L ++DRIWASGGRLADLV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLV 515
Query: 1710 DREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFF 1889
DREDVP+P PDTEDE E+ +N ERHSQRCD+ELKLAVAR+MKDEDGF+
Sbjct: 516 DREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 1890 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDK 2069
YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDK
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDK 635
Query: 2070 LSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAV 2249
LSY+GR+AF+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+
Sbjct: 636 LSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 2250 SHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKD 2429
S+MP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSGIAARVL+IM++DA KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 2430 PVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFG 2606
P DPN +RARLLIN VDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER + D+ ELF
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFA 815
Query: 2607 AACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGR 2786
AACYAAKTTLTALGEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGR
Sbjct: 816 AACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGR 875
Query: 2787 HLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHD 2966
HLIKTSLQ+LTL+R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHD
Sbjct: 876 HLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHD 935
Query: 2967 SYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVL 3146
SYWTHACDVD MN+ILREKFVELY+ PILENLLESFQQSFP L FPP PERGDFDL+EVL
Sbjct: 936 SYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVL 995
Query: 3147 ESPYFFN 3167
ESPYFFN
Sbjct: 996 ESPYFFN 1002
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1401 bits (3626), Expect = 0.0
Identities = 695/967 (71%), Positives = 802/967 (82%), Gaps = 5/967 (0%)
Frame = +3
Query: 282 SQSTIFQEKTRPFELKNGV---NFRSFEMGICQNGKILFGEEDMGRPGFRCFPNPIGFSG 452
SQ++IF +R G+ + ++ +G+ QN + D G R SG
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRG-------SG 106
Query: 453 FSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVGG 629
+ Y S+ AEA+ ST E+ +DEIQ L+EEM KE N+ ++ N Q QPK +GG
Sbjct: 107 SLGRLRSYGSA-AEAIVSTSEED----IDEIQELIEEMDKE-NEALKANLQPKQPKTIGG 160
Query: 630 MGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPL 809
MG+GKY + LRRRQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL
Sbjct: 161 MGVGKYNF--LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPL 218
Query: 810 CDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAAC 989
D IA EQ+LC +GK+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA
Sbjct: 219 RDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAAS 278
Query: 990 HIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQV 1169
+IGEAIEHE RIH D + KE+E+LR KV LMKKQKL QV
Sbjct: 279 YIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD-MMKERERLRKKVKILMKKQKLRQV 337
Query: 1170 RLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMI 1349
R IV+ QDD KPWGQ+ KVGC LI++LM TAYIQPP +QL DGPPDIRPAF+H+LK +
Sbjct: 338 RKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV 397
Query: 1350 KKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYC 1529
+ MK R+ G+I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKG YLFLPSY
Sbjct: 398 E--TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 1530 MRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLV 1709
MRTHGA+QQREA+KR P+KQLE VF+AL+TLGNTKWRVN+++L +++RIWASGGRLADLV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLV 515
Query: 1710 DREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFF 1889
DREDVP+P PDTEDE E+ +N ERHSQRCD+ELKLAVAR+MKDEDGF+
Sbjct: 516 DREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 1890 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDK 2069
YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDK
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDK 635
Query: 2070 LSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAV 2249
LSY+GR+AF+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+
Sbjct: 636 LSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 2250 SHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKD 2429
S+MP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSGIAARVL+IM++DA KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 2430 PVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFG 2606
P DPN +RARLLIN VDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER + D+ ELF
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFA 815
Query: 2607 AACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGR 2786
AACYAAKTTLTALGEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGR
Sbjct: 816 AACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGR 875
Query: 2787 HLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHD 2966
HLIKTSLQ+LTL+R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHD
Sbjct: 876 HLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHD 935
Query: 2967 SYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVL 3146
SYWTHACDVD MN+ILREKFVELY+ PILENLLESFQQSFP L FPP PERGDFDL+EVL
Sbjct: 936 SYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVL 995
Query: 3147 ESPYFFN 3167
ESPYFFN
Sbjct: 996 ESPYFFN 1002
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 1399 bits (3622), Expect = 0.0
Identities = 706/1000 (70%), Positives = 808/1000 (80%), Gaps = 12/1000 (1%)
Frame = +3
Query: 204 SSKQKSTVMWRRVVKQIASSRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEM-------- 359
S ++ S+VMWR V KQ S FS++ F ++ L+ V F +M
Sbjct: 39 SPEKISSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEV 98
Query: 360 GICQNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVD 539
G + G+IL E+ MGR F N + P+GY++ VAEAV STD EEDVS+V+
Sbjct: 99 GSGRIGEILNHEDYMGRTSFGVLKNDNFWC-----PRGYAT-VAEAVSSTDVEEDVSIVE 152
Query: 540 EIQVLLEEMSKEENKIIELNR-QNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKE 716
EIQ LL+EM KEE + E +N+ + GMG GKY+ +L+ RQ+KIET++W+QAA E
Sbjct: 153 EIQELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYR--MLKMRQVKIETEAWEQAANE 210
Query: 717 YKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPA 896
Y+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA+EQE CR KH+ AYAPYFDQLPA
Sbjct: 211 YRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPA 270
Query: 897 DMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXX 1076
DMMAVITMHKLMGLLMTGG+ G RVVQAAC IG+AIE EVRIH
Sbjct: 271 DMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKE 330
Query: 1077 XXV--EVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIE 1250
E + VT EQEKLR KVTDL+KKQKL VR IV+GQDD KPWGQ+A AKVG +IE
Sbjct: 331 DEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIE 390
Query: 1251 LLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKT 1430
LL +TAYIQ P +QL D PPDI PAF H+L+ + K +K G+IEC+PLV +GLE+T
Sbjct: 391 LLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERT 450
Query: 1431 ARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEA 1610
ARHMVIPYMPMLVPP+ WTGYDKGA+ FLPSY MRTHGA+QQR+ +KR P+KQLE VFEA
Sbjct: 451 ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
Query: 1611 LNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXX 1790
L+TLGNTKWRVN R+L V+DRIW+ GGRLADLVDR DVP+P +P+TEDE +L
Sbjct: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVR 570
Query: 1791 XXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCR 1970
+N ERHSQRCD+ELKL+VAR+MKDE+GF+YPHNVDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
Query: 1971 GILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEG 2150
GILEFAEGR LG SGL WLKIHLANLYAGGVDKLS++GR+AFTENHLDDIFDSAD+PLEG
Sbjct: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
Query: 2151 RRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGA 2330
RRWWL AEDPFQCLAVCINL+EA RSSSP+ +SH+PVHQDGSCNGLQHYAALGRD LGA
Sbjct: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
Query: 2331 AAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVM 2510
AAVNLVA EKPADVYSGIAARVL I+R+DA++DP V P+ALRA+LL++ VDRKLVKQTVM
Sbjct: 751 AAVNLVAREKPADVYSGIAARVLVIIRRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
Query: 2511 TSVYGVTYIGARDQIKRRLKERNA-LPDEELFGAACYAAKTTLTALGEMFQAARSIMSWL 2687
TSVYGVTYIGARDQIKRRLKER A + + ELFGA+CYAAK TLTALGEMFQAAR IMSWL
Sbjct: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
Query: 2688 GDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTA 2867
G+CAK+IASENQPVRWTTP GLPVVQPYR+LGRH +KTSLQ+LTL+R+T+K+MVKRQRTA
Sbjct: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTA 930
Query: 2868 FPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETP 3047
FPPNFVHSLDGSHMMMTAVAC KAGL FAGVHDSYWTHACDVD MNRILREKFVELYE P
Sbjct: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
Query: 3048 ILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
ILENLL+SFQ+SFP L PP PERGDFDL+EVL SPYFFN
Sbjct: 991 ILENLLDSFQKSFPKLVLPPLPERGDFDLREVLGSPYFFN 1030
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 1399 bits (3620), Expect = 0.0
Identities = 705/999 (70%), Positives = 808/999 (80%), Gaps = 11/999 (1%)
Frame = +3
Query: 204 SSKQKSTVMWRRVVKQIASSRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEM-------- 359
S ++ S+VMWR V KQ S FS++ F ++ L+ V F +M
Sbjct: 39 SPEKISSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEV 98
Query: 360 GICQNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVD 539
G + G+IL E+ MGR F N + P+GY++ VAEAV STD EEDVS+V+
Sbjct: 99 GSGRIGEILNHEDYMGRTSFGVLKNDNFWC-----PRGYAT-VAEAVSSTDVEEDVSIVE 152
Query: 540 EIQVLLEEMSKEENKIIELNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEY 719
EIQ LL+EM KE+ NR+ +G MG GKY+ +L+ RQ+KIET++W++AA EY
Sbjct: 153 EIQELLQEMKKEQQSGGGRNRRRVARG---MGSGKYR--MLKMRQVKIETEAWEKAANEY 207
Query: 720 KELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPAD 899
+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA+EQE CR KH+ AYAPYFDQLPAD
Sbjct: 208 RELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPAD 267
Query: 900 MMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXX 1079
MMAVITMHKLMGLLMTGG+ G RVVQAAC IG+AIE EVRIH
Sbjct: 268 MMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKED 327
Query: 1080 XV--EVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIEL 1253
E + VT EQEKLR KVTDL+KKQKL VR IV+GQDD KPWGQ+A AKVG +IEL
Sbjct: 328 EEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIEL 387
Query: 1254 LMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTA 1433
L +TAYIQ P +QLAD PPDI PAF H+L+ + K +K G+IEC+PLV +GLE+TA
Sbjct: 388 LTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA 447
Query: 1434 RHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEAL 1613
RHMVIPYMPMLVPP+ WTGYDKGA+ FLPSY MRTHGA+QQR+ +KR P+KQLE VFEAL
Sbjct: 448 RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEAL 507
Query: 1614 NTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXX 1793
+TLGNTKWRVN R+L V+DRIW+ GGRLADLVDR DVP+P +P+TEDE +L
Sbjct: 508 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRN 567
Query: 1794 XXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRG 1973
+N ERHSQRCD+ELKL+VAR+MKDE+GF+YPHNVDFRGRAYPMHPYLNHLGSDLCRG
Sbjct: 568 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 627
Query: 1974 ILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGR 2153
ILEFAEGR LG SGL WLKIHLANLYAGGVDKLS++GR+AFTENHLDDIFDSAD+PLEGR
Sbjct: 628 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 687
Query: 2154 RWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAA 2333
RWWL AEDPFQCLAVCINL+EA RSSSP+ +SH+PVHQDGSCNGLQHYAALGRD LGAA
Sbjct: 688 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 747
Query: 2334 AVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMT 2513
AVNLVA EKPADVYSGIAARVL I+++DA++DP V P+ALRA+LL++ VDRKLVKQTVMT
Sbjct: 748 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 807
Query: 2514 SVYGVTYIGARDQIKRRLKERNA-LPDEELFGAACYAAKTTLTALGEMFQAARSIMSWLG 2690
SVYGVTYIGARDQIKRRLKER A + + ELFGA+CYAAK TLTALGEMFQAAR IMSWLG
Sbjct: 808 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 867
Query: 2691 DCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAF 2870
+CAK+IASENQPVRWTTP GLPVVQPYR+LGRH +KTSLQ+LTL+R+T+K+MVKRQRTAF
Sbjct: 868 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAF 927
Query: 2871 PPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPI 3050
PPNFVHSLDGSHMMMTAVAC KAGL FAGVHDSYWTHACDVD MNRILREKFVELYE PI
Sbjct: 928 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 987
Query: 3051 LENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
LENLL+SFQ+SFP L FPP PERGDFDL+EVL SPYFFN
Sbjct: 988 LENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1026
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 1398 bits (3618), Expect = 0.0
Identities = 713/1006 (70%), Positives = 809/1006 (80%), Gaps = 26/1006 (2%)
Frame = +3
Query: 228 MWRRVVKQIA----------------SSRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEM 359
MWR +VKQ A SS FSQ ++F K R E + +
Sbjct: 1 MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60
Query: 360 GICQNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVD 539
G Q G ++D+G+ +P+ FSG + KGY+S+ AEAV ST EED+S +
Sbjct: 61 GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASA-AEAVIST--EEDMSGSE 117
Query: 540 EIQVLLEEMSKEENKIIELNRQNQPKGVG-GMGLGKYQYQLLRRRQMKIETQSWDQAAKE 716
EI L+E M++EE K+ L QPK V GMG+ KY L++RQ+KIET++W++AAKE
Sbjct: 118 EIHELMEAMAREEKKMSFLV---QPKKVAEGMGVAKYN--TLKKRQIKIETEAWEEAAKE 172
Query: 717 YKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPA 896
Y+ELL DMCE KLAPNLPY+KSLFLGWF+PL D I EQELC++ R ++A YF++L A
Sbjct: 173 YQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSA 231
Query: 897 DMMAVITMHKLMGLLMTG-GDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXX 1073
DMMAV+TMHKLMGLLMT G RVVQAAC IGEAIEHE +I
Sbjct: 232 DMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKK 291
Query: 1074 XXXVEVDPVT-------KEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKV 1232
E +PVT K+QEKLR KVT L+KKQK+HQVR IV+G D K WGQEAH KV
Sbjct: 292 PDG-ESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKV 350
Query: 1233 GCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVR 1412
GC LI+LL+ AYIQPPV+QL D PPDIRPAF+HSLK I K K R+ G+IECD LVR
Sbjct: 351 GCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVR 410
Query: 1413 QGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQL 1592
+GLEKTARHMVIPYMPMLVPP NWTGYD+GAYLFLPSY MRTHGA+QQRE +KR P+KQL
Sbjct: 411 KGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQL 470
Query: 1593 EHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXX 1772
E +FEAL+TLGNTKWR+NKR+L V+DR+WA+GGR+A LVDREDVP+P +PDTEDE E+
Sbjct: 471 EPIFEALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQK 530
Query: 1773 XXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHL 1952
QN+ERHS RCDVELKLAVAR+M+DEDGF+YPHN+DFRGRAYPMHPYLNHL
Sbjct: 531 WKWKVKAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHL 590
Query: 1953 GSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSA 2132
GSDLCRG+LEFAEGRPLG SGLRWLKIHLANLYAGGVDKLSY+GRIAFTENHLDDIFDSA
Sbjct: 591 GSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSA 650
Query: 2133 DRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALG 2312
DRPLEGRRWWL AEDPFQCLA CINLSEA RSSSP+ +SHMPVHQDGSCNGLQHYAALG
Sbjct: 651 DRPLEGRRWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALG 710
Query: 2313 RDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKL 2492
RDKLGAA+VNLVAGEKPADVYSGIAARV++IMR+DAEKDP ++P+AL ARLLIN VDRKL
Sbjct: 711 RDKLGAASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKL 770
Query: 2493 VKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAAR 2669
VKQTVMTSVYGVTYIGARDQIKRRLKER A+ D+ E+F A+CYAA+TTLTALGEMFQAAR
Sbjct: 771 VKQTVMTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAAR 830
Query: 2670 SIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMV 2849
SIM+WLG+CAKVI+SENQPVRW TP GLPVVQPYRQLGRHLIKTSLQVLTL+R+TDK+M
Sbjct: 831 SIMNWLGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMA 890
Query: 2850 KRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFV 3029
KRQRTAFPPNFVHSLDGSHMMMTAVAC KAGLNFAGVHDSYWTHACDVD MNRILREKFV
Sbjct: 891 KRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFV 950
Query: 3030 ELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
ELYE PILENLLESFQ+SFP+L FPP PERGDFDL+EVLESPYFFN
Sbjct: 951 ELYEAPILENLLESFQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1397 bits (3616), Expect = 0.0
Identities = 707/1014 (69%), Positives = 815/1014 (80%), Gaps = 34/1014 (3%)
Frame = +3
Query: 228 MWRRVVKQIASSRK--------LMRFSQSTIFQEKTRPFELKNGVNFRSFEMGICQNG-- 377
MWR + KQ A SRK L+ FSQ + KTRP + + + +G+ QN
Sbjct: 1 MWRYISKQ-AYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIF 59
Query: 378 -------KILFG--EEDMGRPGFRCFPNPIGFS-------------GFSNHPKGYSSSVA 491
+ L G EE P N + S G + Y S+ A
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA-A 118
Query: 492 EAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVGGMGLGKYQYQLLRR 668
EA+ ST E+ +DEIQ L+EEM+KE N+ ++ N Q QPK +GGMG+GKY LLRR
Sbjct: 119 EAIASTSEED----IDEIQELIEEMNKE-NEALKTNLQPKQPKTIGGMGVGKYN--LLRR 171
Query: 669 RQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQ 848
RQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA EQ+LC +
Sbjct: 172 RQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDE 231
Query: 849 GKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIH 1028
GK+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 232 GKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIH 291
Query: 1029 XXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPW 1208
D + KE+E++R KV LMKKQKL QVR IV+ QDD KPW
Sbjct: 292 RFLEKTKKSNALSGDLEDTPGD-IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPW 350
Query: 1209 GQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGI 1388
GQ+ KVGC LI++LM TAYIQPP +QL D PPDIRPAF+H+LK ++ MK R+ G+
Sbjct: 351 GQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVE--TMKGSRRYGV 408
Query: 1389 IECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAI 1568
I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGAYLFLPSY MRTHGA+QQREA+
Sbjct: 409 IQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAV 468
Query: 1569 KRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDT 1748
KR P+KQLE VF+AL+TLGNTKWR+N+++L ++DRIWASGGRLADLVDREDVP+P EPD
Sbjct: 469 KRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDA 528
Query: 1749 EDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYP 1928
EDE ++ +N ERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYP
Sbjct: 529 EDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYP 588
Query: 1929 MHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENH 2108
MHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+ENH
Sbjct: 589 MHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENH 648
Query: 2109 LDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNG 2288
++DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S+MP+HQDGSCNG
Sbjct: 649 VEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNG 708
Query: 2289 LQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLL 2468
LQHYAALGRD LGAAAVNLVAG+KPADVYSGIAARVL+IM++DA KDP DPN +RARLL
Sbjct: 709 LQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLL 768
Query: 2469 INHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTAL 2645
IN VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER + D+ ELF AACYAAKTTLTAL
Sbjct: 769 INQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTAL 828
Query: 2646 GEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLK 2825
GEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+
Sbjct: 829 GEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQ 888
Query: 2826 RDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMN 3005
R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDSYWTHA DVD MN
Sbjct: 889 RETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMN 948
Query: 3006 RILREKFVELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
+ILREKFVELY+ PILENLLESFQQSFP L FPP PERGDFDL+EVLESPYFFN
Sbjct: 949 KILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1397 bits (3615), Expect = 0.0
Identities = 696/968 (71%), Positives = 803/968 (82%), Gaps = 6/968 (0%)
Frame = +3
Query: 282 SQSTIFQEKTRPFELKNGV---NFRSFEMGICQNGKILFGEEDMGRPGFR-CFPNPIGFS 449
SQ++IF +R G+ + ++ +G+ QN + D FR C G
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGD-----FRVCGKRGSGSL 108
Query: 450 GFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVG 626
GF + Y S+ AEA+ ST E+ +DEIQ L+EEM+KE N+ ++ N Q QPK +G
Sbjct: 109 GFL---RSYGSA-AEAIASTSEED----IDEIQELIEEMNKE-NEALKTNLQPKQPKTIG 159
Query: 627 GMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQP 806
GMG+GKY LLRRRQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+P
Sbjct: 160 GMGVGKYN--LLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEP 217
Query: 807 LCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAA 986
L D IA EQ+LC +GK+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA
Sbjct: 218 LRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAA 277
Query: 987 CHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQ 1166
HIGEAIEHE RIH D + KE+E+LR KV LMKKQKL Q
Sbjct: 278 SHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGD-IMKERERLRKKVKILMKKQKLQQ 336
Query: 1167 VRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKM 1346
VR IV+ QDD KPWGQ+ KVGC LI++LM TAYIQPP +QL D PPDIRPAF+H+LK
Sbjct: 337 VRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKT 396
Query: 1347 IKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSY 1526
++ MK R+ G+I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGAYLFLPSY
Sbjct: 397 VE--TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSY 454
Query: 1527 CMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADL 1706
MRTHGA+QQREA+KR P+KQLE VF+AL+TLGNTKWR+N+++L ++DRIWASGGRLADL
Sbjct: 455 IMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADL 514
Query: 1707 VDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGF 1886
VDREDVP+P EPD EDE ++ +N ERHSQRCD+ELKLAVAR+MKDEDGF
Sbjct: 515 VDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGF 574
Query: 1887 FYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVD 2066
+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVD
Sbjct: 575 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVD 634
Query: 2067 KLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDA 2246
KLSY+GR+AF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A
Sbjct: 635 KLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETA 694
Query: 2247 VSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEK 2426
+S+MP+HQDGSCNGLQHYAALGRD LGAAAVNLVAG+KPADVYSGIAARVL+IM++DA K
Sbjct: 695 ISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAK 754
Query: 2427 DPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELF 2603
DP DPN +RARLLIN VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER + D+ ELF
Sbjct: 755 DPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELF 814
Query: 2604 GAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLG 2783
AACYAAKTTLTALGEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LG
Sbjct: 815 AAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLG 874
Query: 2784 RHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVH 2963
RHLIKTSLQ+LTL+R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVH
Sbjct: 875 RHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVH 934
Query: 2964 DSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEV 3143
DSYWTHA DVD MN+ILREKFVELY+ PILENLLESFQQSFP L FPP PERGDFDL+EV
Sbjct: 935 DSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREV 994
Query: 3144 LESPYFFN 3167
LESPYFFN
Sbjct: 995 LESPYFFN 1002
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1390 bits (3598), Expect = 0.0
Identities = 705/1014 (69%), Positives = 812/1014 (80%), Gaps = 34/1014 (3%)
Frame = +3
Query: 228 MWRRVVKQIASSRK--------LMRFSQSTIFQEKTRPFELKNGVNFRSFEMGICQNG-- 377
MWR + KQ A SRK L+ FSQ + KTRP + + + +G+ QN
Sbjct: 1 MWRYISKQ-AYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIF 59
Query: 378 -------KILFG--EEDMGRPGFRCFPNPIGFS-------------GFSNHPKGYSSSVA 491
+ L G EE P N + S G + Y S+ A
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA-A 118
Query: 492 EAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIELNRQ-NQPKGVGGMGLGKYQYQLLRR 668
EA+ ST E+ DEIQ L+EEM+KE N+ ++ N Q QPK +GGMG+GKY LLRR
Sbjct: 119 EAIASTSEED----TDEIQELIEEMNKE-NEALKTNLQPKQPKTIGGMGVGKYN--LLRR 171
Query: 669 RQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQ 848
RQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA EQ+LC +
Sbjct: 172 RQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDE 231
Query: 849 GKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIH 1028
GK+RGA AP+FDQLPA+MMAVITMHKLMG LMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 232 GKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIH 291
Query: 1029 XXXXXXXXXXXXXXXXXXVEVDPVTKEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPW 1208
D + KE+E++R KV LMKKQKL QVR IV+ QDD KPW
Sbjct: 292 RFLEKTKKSNALSGDLEDTPGD-IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPW 350
Query: 1209 GQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGI 1388
GQ+ KVGC LI++LM TAYIQPP +QL D PPDIRPAF+H+LK ++ MK R+ G+
Sbjct: 351 GQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVE--TMKGSRRYGV 408
Query: 1389 IECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAI 1568
I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGAYLFLPSY MRTHGA+QQREA+
Sbjct: 409 IQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAV 468
Query: 1569 KRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDT 1748
KR P+KQLE VF+AL+TLGNTKWR+N+++L ++DRIWASGGRLADLVDREDVP+P EPD
Sbjct: 469 KRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDA 528
Query: 1749 EDEPELXXXXXXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYP 1928
EDE ++ +N ERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYP
Sbjct: 529 EDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYP 588
Query: 1929 MHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENH 2108
MHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+ENH
Sbjct: 589 MHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENH 648
Query: 2109 LDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNG 2288
++DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S+MP+HQDGSCNG
Sbjct: 649 VEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNG 708
Query: 2289 LQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLL 2468
LQHYAALGRD LGAAAVNLVAG+KPADVYSGIAARVL+IM++DA KDP DPN +RARLL
Sbjct: 709 LQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLL 768
Query: 2469 INHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTAL 2645
IN VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER + D+ ELF AACYAAKTTLTAL
Sbjct: 769 INQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTAL 828
Query: 2646 GEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLK 2825
GEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+
Sbjct: 829 GEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQ 888
Query: 2826 RDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMN 3005
R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDSYWTHA DVD MN
Sbjct: 889 RETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMN 948
Query: 3006 RILREKFVELYETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
+ILREKFVELY+ PILENLLESFQQSFP L FPP PERGDFDL+EVLESPYFFN
Sbjct: 949 KILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 1383 bits (3579), Expect = 0.0
Identities = 690/1004 (68%), Positives = 798/1004 (79%), Gaps = 24/1004 (2%)
Frame = +3
Query: 228 MWRRVVKQIASSRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEMGICQNGKILFGEEDMG 407
MWR ++ + S K + FS + + ++ V + +C L G
Sbjct: 1 MWRNFARRTSLSSKKLNFSSDCT--QLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISG 58
Query: 408 ---------RPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLE 560
+P F NP GFS F KGY+++ A+ + STD E D S DE+Q +E
Sbjct: 59 LSSQNHEFIKPSFTNLTNPFGFSHFLF--KGYATAAAQVIASTD-ESDFSGCDELQEQIE 115
Query: 561 EMSKEENKIIELNRQNQP-----KGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKE 725
E++K K+ RQ Q K + GMG+GKY +L++RQ+K+ET++W++AA+EY+E
Sbjct: 116 EINKHHKKMDAHFRQQQQQQQRKKTIAGMGIGKYT--ILKKRQIKMETEAWEEAAREYQE 173
Query: 726 LLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMM 905
LL DMCEQKLAPNLPY+KSLFLGWF+PL D IA+EQEL R+ ++ ++ PYFD LPADMM
Sbjct: 174 LLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMM 233
Query: 906 AVITMHKLMGLLMT-GGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXX 1082
AVITMHKLMGLLMT G GS RVVQAAC +GEAIEHE RIH
Sbjct: 234 AVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEP 293
Query: 1083 V-EVDPVT-------KEQEKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGC 1238
+++PVT KEQEKLR KVT+LMKKQK+ QVR + +G DD PWGQEA KVGC
Sbjct: 294 EGKLEPVTSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGC 353
Query: 1239 HLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQG 1418
LI+LL+ TAYIQPPVNQL DG PDIRPAF+H+LK + K KT R+ G+IECDP+VR G
Sbjct: 354 RLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNG 413
Query: 1419 LEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEH 1598
LEK+ARHMVIPYMPMLVPP+NW GYD+GAYLFLPSY MRTHGA+QQR A+KR P KQLE
Sbjct: 414 LEKSARHMVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEP 473
Query: 1599 VFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXX 1778
V+EALNTLGNTKWR+NK++L V+DRIWA+GGRLA L+DRED P+P E +TEDE E+
Sbjct: 474 VYEALNTLGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWK 533
Query: 1779 XXXXXXXXQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGS 1958
+NSERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYPMHP+LNHLGS
Sbjct: 534 WKVKNVKKENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGS 593
Query: 1959 DLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADR 2138
D+CRGILEFAEGRPLG SG RWLKIHLAN+YAGGVDKLSY+GR+AFTENHLD IFDSADR
Sbjct: 594 DMCRGILEFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADR 653
Query: 2139 PLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRD 2318
PLEGRRWWLGAEDPFQCLA C NL+EAFRSSSP+ +SHMP+HQDGSCNGLQHYAALGRD
Sbjct: 654 PLEGRRWWLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRD 713
Query: 2319 KLGAAAVNLVAGEKPADVYSGIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVK 2498
KLGAAAVNLV+GEKPADVYSGIAARVL+IMR DAEKDP +PNAL A+LLIN VDRKLVK
Sbjct: 714 KLGAAAVNLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVK 773
Query: 2499 QTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSI 2675
QTVMTSVYGVTYIGARDQIKRRLKER+A+ D+ L+ A+CYAAKTTL AL EMF+ ARSI
Sbjct: 774 QTVMTSVYGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSI 833
Query: 2676 MSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKR 2855
M+WLG+CAKVIASENQPV+WTTP GLPVVQPYRQLGRHLIKTSLQ+L L+++TDKIMVKR
Sbjct: 834 MAWLGECAKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKR 893
Query: 2856 QRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVEL 3035
QRTAFPPNFVHSLDGSHMMMTAVAC AGLNFAGVHDSYWTHACDVD MNRILRE FVEL
Sbjct: 894 QRTAFPPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVEL 953
Query: 3036 YETPILENLLESFQQSFPTLTFPPFPERGDFDLKEVLESPYFFN 3167
YE PILENLLE FQ+SFP L FPP P+RGDFDL++VLESPYFFN
Sbjct: 954 YEAPILENLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997
>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1100
Score = 1377 bits (3565), Expect = 0.0
Identities = 708/1035 (68%), Positives = 819/1035 (79%), Gaps = 22/1035 (2%)
Frame = +3
Query: 102 MTSYRTIIFSANLTNKFNLSISIDK--PSLIIFHPISSKQKSTVMWRRVVKQIASSR--- 266
M+ T + S+NL +KF+ + +D PS++ +P + S VMWR + K S R
Sbjct: 1 MSIIETPLISSNLLDKFDHFVPLDNRNPSILYQNP---PKISIVMWRNIAKHAISRRTHS 57
Query: 267 --------KLMRFSQSTIFQEKTRPFELKNGV---NFRSFEMGICQNGKILFGEEDMGRP 413
+ SQ +IF EK++ LK G N R +MG + G++L E +G+
Sbjct: 58 FQCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSRFLDMGGRRIGEVLTNVEYIGKQ 117
Query: 414 GFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVLLEEMSKEENKIIE 593
F N IG SG P+GY S VAEAV STD EEDVSVV+EI+ LL+EM KE+ + E
Sbjct: 118 SFGSPRNEIGCSGLC--PRGYVS-VAEAVSSTDVEEDVSVVEEIKELLDEMKKEQRR--E 172
Query: 594 LNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPY 773
+ + + G+G+ +Y+ LRRRQ+KIET++W+QAAKEY+ELL DMCE KLAPNLPY
Sbjct: 173 TGNRRRRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPY 232
Query: 774 MKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGG 953
+KSLFLGWF+PL D I +EQEL R GK R YA Y DQLPADM AVITMHKLMGLLMTGG
Sbjct: 233 IKSLFLGWFEPLRDAIIKEQELYRLGKLRAGYAGYLDQLPADMTAVITMHKLMGLLMTGG 292
Query: 954 DPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXXVEV-DPVTKEQEKLRHK 1130
+ G RVVQAAC IG+AIE EVRIH + + KEQEKLR K
Sbjct: 293 EHGCARVVQAACLIGDAIEQEVRIHKFLEKTKKKRVDKKNEDEGDKPNAEIKEQEKLRKK 352
Query: 1131 VTDLMKKQKLHQVRLIVRGQDDMKPWGQEAHAKVGCHLIELLMRTAYIQPPVNQLADGPP 1310
VTDL+KKQKL VR IV+GQDD KPWGQ+A AKVG HLIELLM+TAYIQPP +QLAD PP
Sbjct: 353 VTDLIKKQKLPAVRQIVKGQDDTKPWGQDAKAKVGSHLIELLMQTAYIQPPADQLADCPP 412
Query: 1311 DIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVP----PI 1478
D+RPAF+HSL+ + K KTGR+ G+IEC+PLVR+GLE+T+ + L +
Sbjct: 413 DVRPAFVHSLRTVVKENKKTGRRYGVIECNPLVRKGLERTSMDPCKAHGDSLYANVGVKV 472
Query: 1479 NWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRML 1658
WTGYD+GAYLF+PSY MRTHG +QQREA+KR P+KQLE VFEAL+TLG TKWRVNKR+L
Sbjct: 473 KWTGYDRGAYLFIPSYIMRTHGVKQQREAVKRTPRKQLEPVFEALDTLGCTKWRVNKRVL 532
Query: 1659 DVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXXQNSERHSQRCDV 1838
+V+DRIW SGGRLADLVDR+DVP+P +PD+EDE L +N ERHS RCDV
Sbjct: 533 NVVDRIWTSGGRLADLVDRKDVPLPEKPDSEDEAVLRKWKWKVRSVKKENRERHSLRCDV 592
Query: 1839 ELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGL 2018
ELKLAVAR+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEF EGRPLG SGL
Sbjct: 593 ELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFGEGRPLGKSGL 652
Query: 2019 RWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAV 2198
RWLKIHLANLYAGGVDKLS+ GR+AF ENHLDDIFDSADRPLEG+RWWL AEDPFQCLAV
Sbjct: 653 RWLKIHLANLYAGGVDKLSHGGRLAFAENHLDDIFDSADRPLEGKRWWLKAEDPFQCLAV 712
Query: 2199 CINLSEAFRSSSPQDAVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYS 2378
CINL+EA RSSSP+ VSH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLVAGEKPADVYS
Sbjct: 713 CINLAEALRSSSPETFVSHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEKPADVYS 772
Query: 2379 GIAARVLEIMRKDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIK 2558
GIAARVL+I+R+DA+KDP V P+AL A++L+N VDRKLVKQTVMTSVYGVTYIGARDQIK
Sbjct: 773 GIAARVLDIIRRDAQKDPAVFPDALHAKVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIK 832
Query: 2559 RRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRW 2735
RRLKER + D+ E+FGA+CYAAKTTLTALGEMFQAAR+IM+WLG+CAK+IASENQPVRW
Sbjct: 833 RRLKERGVITDDKEIFGASCYAAKTTLTALGEMFQAARAIMNWLGECAKIIASENQPVRW 892
Query: 2736 TTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMM 2915
TTP GLPVVQPYR LGRHLIKTSLQVLTL+R+T+K+MVKRQRTAFPPNFVHSLDGSHMMM
Sbjct: 893 TTPLGLPVVQPYRVLGRHLIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 952
Query: 2916 TAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQQSFPTL 3095
TAVAC KAGL FAGVHDSYWTHA DVD MNRILREKFVELYE PILENLLESFQQSFPTL
Sbjct: 953 TAVACKKAGLTFAGVHDSYWTHASDVDKMNRILREKFVELYEVPILENLLESFQQSFPTL 1012
Query: 3096 TFPPFPERGDFDLKE 3140
FPP PERGDFDL++
Sbjct: 1013 CFPPLPERGDFDLRD 1027