BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00000948
         (1244 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007009784.1| Pseudouridine synthase family protein [Theob...   535   e-149
ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...   509   e-142
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...   504   e-140
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              504   e-140
ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [...   503   e-140
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   498   e-138
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...   498   e-138
ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   497   e-138
ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Popu...   497   e-138
ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...   494   e-137
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]           493   e-137
ref|XP_007143685.1| hypothetical protein PHAVU_007G093000g [Phas...   491   e-136
ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like...   489   e-135
ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like...   487   e-135
ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [...   483   e-134
ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like...   481   e-133
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   481   e-133
gb|EYU39826.1| hypothetical protein MIMGU_mgv1a008941mg [Mimulus...   470   e-130
ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutr...   459   e-127
ref|XP_006651272.1| PREDICTED: RNA pseudouridine synthase 5-like...   456   e-126

>ref|XP_007009784.1| Pseudouridine synthase family protein [Theobroma cacao]
            gi|508726697|gb|EOY18594.1| Pseudouridine synthase family
            protein [Theobroma cacao]
          Length = 378

 Score =  535 bits (1378), Expect = e-149
 Identities = 258/376 (68%), Positives = 305/376 (81%)
 Frame = -1

Query: 1223 VTFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGI 1044
            + FG PWP+LN+GL Y D ++P+D++ +LI+FYS+K+KNSAP QGWLQRI+NGQI++DG 
Sbjct: 10   LVFGLPWPELNDGLFYDDVIKPSDSELTLIEFYSSKYKNSAPSQGWLQRIQNGQISVDGR 69

Query: 1043 IVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQR 864
            +V D +TILR  SEL+Y RLPWKEPDAP            +ALNKPSGLQVLPGGLFQQR
Sbjct: 70   VVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPSGLQVLPGGLFQQR 129

Query: 863  TVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAY 684
            TVLTQL WR RKQ+S       +L  +ESHPVPVHRLGRGTSGILLCAKTK AK  LAAY
Sbjct: 130  TVLTQLSWRMRKQTS-------SLASQESHPVPVHRLGRGTSGILLCAKTKAAKTCLAAY 182

Query: 683  FADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLY 504
            FADGTS++G      ++   TRKISKIYRAL TGIL +D+VVINQPIG+ +Y GVAKGLY
Sbjct: 183  FADGTSLIGANSNRKMQPSCTRKISKIYRALVTGILGEDKVVINQPIGIVQYPGVAKGLY 242

Query: 503  VASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGG 324
            VAS SGKPA SKV VLEKDEQ NHTLVQV+I+SGRPHQIRIHLSFIGHPL+GDPLY++GG
Sbjct: 243  VASPSGKPALSKVEVLEKDEQQNHTLVQVQIESGRPHQIRIHLSFIGHPLLGDPLYIAGG 302

Query: 323  HPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSI 144
             P CFD+E  D+N+A DGGYQRP+NPVPGDCGYYLHAHRL+L HPTT E+I ITAPLP +
Sbjct: 303  QPRCFDSEFVDENYAQDGGYQRPVNPVPGDCGYYLHAHRLLLSHPTTDEIINITAPLPPV 362

Query: 143  LQTREEAIQIKSAVEI 96
            LQT++E  + + +  I
Sbjct: 363  LQTQDEVRRSRESQSI 378


>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
            sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED: RNA
            pseudouridine synthase 5-like isoform X3 [Citrus
            sinensis]
          Length = 389

 Score =  509 bits (1311), Expect = e-142
 Identities = 256/372 (68%), Positives = 294/372 (79%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG PWP LNEGL Y D V P+D+  +LI+FYSTKHKNSAP QGWLQRI+NGQIT+DG +V
Sbjct: 13   FGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVV 72

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
             D + IL AGSEL+Y RLPWKEPD P            +ALNKPSGLQVLPGGLFQQRTV
Sbjct: 73   NDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 132

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            L QLQWRA KQSS       +L  + SHPVPVHRLGRGTSGILLCAKTK+AK  +AAYFA
Sbjct: 133  LKQLQWRASKQSS-------SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 185

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            D TSVV D     +EL   RKI+KIYRAL  GI+D+D+V+I QPIG+ RY GVAKGLYVA
Sbjct: 186  DKTSVV-DADNTVMELSQ-RKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVA 243

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
            S SGKPA SKV+VLE+D Q N TLVQVEIQSGRPHQIRIHL+F+GHPL+GDPLYV+GG P
Sbjct: 244  SPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQP 303

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
              FD+E  D   A DGGY+RP+NPVPGDCGYYLHA++L L HPTT EVI+ITAPLPS+L+
Sbjct: 304  KSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPSVLK 363

Query: 137  TREEAIQIKSAV 102
            TREE  ++  +V
Sbjct: 364  TREEGREVDKSV 375


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
            sinensis]
          Length = 390

 Score =  504 bits (1299), Expect = e-140
 Identities = 256/373 (68%), Positives = 294/373 (78%), Gaps = 1/373 (0%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG PWP LNEGL Y D V P+D+  +LI+FYSTKHKNSAP QGWLQRI+NGQIT+DG +V
Sbjct: 13   FGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGRVV 72

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
             D + IL AGSEL+Y RLPWKEPD P            +ALNKPSGLQVLPGGLFQQRTV
Sbjct: 73   NDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 132

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            L QLQWRA KQSS       +L  + SHPVPVHRLGRGTSGILLCAKTK+AK  +AAYFA
Sbjct: 133  LKQLQWRASKQSS-------SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 185

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            D TSVV D     +EL   RKI+KIYRAL  GI+D+D+V+I QPIG+ RY GVAKGLYVA
Sbjct: 186  DKTSVV-DADNTVMELSQ-RKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVA 243

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLV-QVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGH 321
            S SGKPA SKV+VLE+D Q N TLV QVEIQSGRPHQIRIHL+F+GHPL+GDPLYV+GG 
Sbjct: 244  SPSGKPALSKVDVLERDVQRNCTLVQQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQ 303

Query: 320  PNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSIL 141
            P  FD+E  D   A DGGY+RP+NPVPGDCGYYLHA++L L HPTT EVI+ITAPLPS+L
Sbjct: 304  PKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPSVL 363

Query: 140  QTREEAIQIKSAV 102
            +TREE  ++  +V
Sbjct: 364  KTREEGREVDKSV 376


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  504 bits (1299), Expect = e-140
 Identities = 245/348 (70%), Positives = 283/348 (81%)
 Frame = -1

Query: 1220 TFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGII 1041
            TFG PWPD N+GLTY D V  +D++ +LID+YS+KHKNSAP QGWLQRI  GQIT+DG +
Sbjct: 4    TFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTV 63

Query: 1040 VTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRT 861
            VT+  TILRAGS+L+Y RLPW+EPDAP            +ALNKPSGLQVLPGGLFQQRT
Sbjct: 64   VTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRT 123

Query: 860  VLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYF 681
            VLTQLQWRA KQ+SL +        +ESH VPVHRLGRGTSGILLCAKTK+AK RLAAYF
Sbjct: 124  VLTQLQWRANKQNSLPAC-------QESHSVPVHRLGRGTSGILLCAKTKLAKTRLAAYF 176

Query: 680  ADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYV 501
            ADGTSVVG  +  +++    RKISKIYRAL  GILDKDE+VI QPIGM +Y GVAKGLYV
Sbjct: 177  ADGTSVVGGNRDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPGVAKGLYV 236

Query: 500  ASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGH 321
            AS SGKPA SKV++LE+D QG+H +VQVEIQSGRPHQIRIHLSFIGHPL+GDPLYV GG 
Sbjct: 237  ASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVPGGQ 296

Query: 320  PNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKE 177
            P C DAE  ++++A DGGYQRP+ PVPGDCGY+LHAH+L+L HPTT E
Sbjct: 297  PKCCDAEFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 344


>ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
          Length = 348

 Score =  503 bits (1294), Expect = e-140
 Identities = 246/349 (70%), Positives = 284/349 (81%), Gaps = 1/349 (0%)
 Frame = -1

Query: 1220 TFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGII 1041
            TFG PWPD N+GLTY D V  +D++ +LID+YS+KHKNSAP QGWLQRI  GQIT+DG +
Sbjct: 4    TFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTV 63

Query: 1040 VTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRT 861
            VT+  TILRAGS+L+Y RLPW+EPDAP            +ALNKPSGLQVLPGGLFQQRT
Sbjct: 64   VTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRT 123

Query: 860  VLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYF 681
            VLTQLQWRA KQ+SL +        +ESH VPVHRLGRGTSGILLCAKTK+AK RLAAYF
Sbjct: 124  VLTQLQWRANKQNSLPAC-------QESHSVPVHRLGRGTSGILLCAKTKLAKTRLAAYF 176

Query: 680  ADGTSVVGDKKKD-NLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLY 504
            ADGTSVVG  + D +++    RKISKIYRAL  GILDKDE+VI QPIGM +Y GVAKGLY
Sbjct: 177  ADGTSVVGGNRLDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPGVAKGLY 236

Query: 503  VASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGG 324
            VAS SGKPA SKV++LE+D QG+H +VQVEIQSGRPHQIRIHLSFIGHPL+GDPLYV GG
Sbjct: 237  VASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVPGG 296

Query: 323  HPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKE 177
             P C DAE  ++++A DGGYQRP+ PVPGDCGY+LHAH+L+L HPTT E
Sbjct: 297  QPKCCDAEFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 345


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  498 bits (1283), Expect = e-138
 Identities = 247/369 (66%), Positives = 285/369 (77%)
 Frame = -1

Query: 1229 TFVTFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITID 1050
            +F   G PWPDLN+GL Y D V+P D+  SLI FYS K+K+SAP +GWLQRI+N QITID
Sbjct: 6    SFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITID 65

Query: 1049 GIIVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQ 870
            G ++TD +TILR GS+L+YRRLPWKEPD P            +ALNKPSGLQVLPGG+FQ
Sbjct: 66   GEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQ 125

Query: 869  QRTVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLA 690
            QRTVLTQLQW + KQS   S         E HPVPVHRLGRGTSGILLCAKTK+A+ + A
Sbjct: 126  QRTVLTQLQWWSSKQSFSVS--------EELHPVPVHRLGRGTSGILLCAKTKLARTQFA 177

Query: 689  AYFADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKG 510
            AYFA+GTS V   +   +E G  RKISKIYRAL TGI+  DEV ++QPIG  +Y GVA+G
Sbjct: 178  AYFAEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQG 237

Query: 509  LYVASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVS 330
            LYVA+ SGKPA SKVNVLE+DEQ  HTLVQVEIQSGRPHQIRIHLS IGHPLVGDPLYV+
Sbjct: 238  LYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLVGDPLYVA 297

Query: 329  GGHPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLP 150
            GG PNC  +E  + + A DGGY+RP  PVPGDCGYYLHAH+LILYHP T EV++I APLP
Sbjct: 298  GGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLP 357

Query: 149  SILQTREEA 123
             IL+TR EA
Sbjct: 358  PILRTRIEA 366


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
            vesca]
          Length = 375

 Score =  498 bits (1282), Expect = e-138
 Identities = 242/370 (65%), Positives = 293/370 (79%)
 Frame = -1

Query: 1220 TFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGII 1041
            TFG PWPDLN+GL+Y D V+ +D++ +LI+FYS+K+K+SAP QGWLQRIRNGQIT+DG +
Sbjct: 12   TFGLPWPDLNDGLSYNDVVKSSDSELTLIEFYSSKYKSSAPLQGWLQRIRNGQITVDGEV 71

Query: 1040 VTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRT 861
            V DSDTILR GSEL+Y RLPW EPDAP            +ALNKP GLQVLPGGLFQQRT
Sbjct: 72   VRDSDTILRVGSELVYHRLPWGEPDAPYLLEVLYEDDDMIALNKPGGLQVLPGGLFQQRT 131

Query: 860  VLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYF 681
            VLTQL WR  ++          L  ++SH VPVHRLGRGTSGILLCAKTK AK +LAAYF
Sbjct: 132  VLTQLLWRESQKFD-------HLACQKSHLVPVHRLGRGTSGILLCAKTKHAKTQLAAYF 184

Query: 680  ADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYV 501
            ADGTS +GD    N +L  TRKI+KIYRAL TGI+ +DEV++ QPIG  RY GVAKGLY+
Sbjct: 185  ADGTSHIGDDSTTNTKLHTTRKITKIYRALVTGIICEDEVIVKQPIGTVRYPGVAKGLYI 244

Query: 500  ASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGH 321
            AS +GKPA SKV VL++D Q NHT+VQVEIQSGRPHQIRIHLSFIGHPL+GDPLYV+GG 
Sbjct: 245  ASPAGKPALSKVEVLDRDIQKNHTIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAGGQ 304

Query: 320  PNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSIL 141
            P C  ++  D++ A DGG++RP  PVPGDCGY LHAH+++L HP++ EVI+ITAPLP +L
Sbjct: 305  PKCLGSDLVDESFADDGGFKRPTKPVPGDCGYNLHAHQVVLSHPSSNEVIKITAPLPLVL 364

Query: 140  QTREEAIQIK 111
            +TREE  +++
Sbjct: 365  RTREEIEELR 374


>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  497 bits (1280), Expect = e-138
 Identities = 246/369 (66%), Positives = 285/369 (77%)
 Frame = -1

Query: 1229 TFVTFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITID 1050
            +F   G PWPDLN+GL Y D V+P D+  SLI FYS K+K+SAP +GWLQRI+N QITID
Sbjct: 6    SFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITID 65

Query: 1049 GIIVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQ 870
            G ++TD +TILR GS+L+YRRLPWKEPD P            +ALNKPSGLQVLPGG+FQ
Sbjct: 66   GEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQ 125

Query: 869  QRTVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLA 690
            QRTVLTQLQW + KQS   S         E HPVPVHRLGRGTSGILLCAKTK+A+ + A
Sbjct: 126  QRTVLTQLQWWSSKQSFSVS--------EELHPVPVHRLGRGTSGILLCAKTKLARTQFA 177

Query: 689  AYFADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKG 510
            AYFA+GTS V   +   +E G  RKISKIYRAL TGI+  DEV ++QPIG  +Y GVA+G
Sbjct: 178  AYFAEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQG 237

Query: 509  LYVASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVS 330
            LYVA+ SGKPA SKVNVLE+DEQ  HTLVQVEIQSGRPHQIRIHLS IGHPL+GDPLYV+
Sbjct: 238  LYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVA 297

Query: 329  GGHPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLP 150
            GG PNC  +E  + + A DGGY+RP  PVPGDCGYYLHAH+LILYHP T EV++I APLP
Sbjct: 298  GGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLP 357

Query: 149  SILQTREEA 123
             IL+TR EA
Sbjct: 358  PILRTRIEA 366


>ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Populus trichocarpa]
            gi|222851845|gb|EEE89392.1| hypothetical protein
            POPTR_0008s04160g [Populus trichocarpa]
          Length = 377

 Score =  497 bits (1279), Expect = e-138
 Identities = 252/371 (67%), Positives = 287/371 (77%), Gaps = 2/371 (0%)
 Frame = -1

Query: 1220 TFGAPWPDLNEGLTYTDFVEPN-DTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGI 1044
            +FG+PWPDLNEGL Y D V  + D+  +LI FYS+K+KNSAP QGWLQRI NGQITIDG 
Sbjct: 13   SFGSPWPDLNEGLFYNDVVSTSSDSGLTLIHFYSSKYKNSAPLQGWLQRIHNGQITIDGE 72

Query: 1043 IVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQR 864
            +V +   ILR G EL+Y RLPW+EPDAP            VALNKP GLQVLPGGLFQQR
Sbjct: 73   VVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPGLQVLPGGLFQQR 132

Query: 863  TVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAY 684
            TVL QLQWRA K SS       +L  + SHPVPVHRLGRGTSGILLCAKTKVAK  LAAY
Sbjct: 133  TVLMQLQWRASKGSS-------SLAIQGSHPVPVHRLGRGTSGILLCAKTKVAKTSLAAY 185

Query: 683  FADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLY 504
            FADGTS++GD    N+E    RKISKIYRAL  GIL++D+++I QPIG  RY GVAKGLY
Sbjct: 186  FADGTSLIGDSSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMRYPGVAKGLY 245

Query: 503  VASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGG 324
            VAS SGKPA SKV VLE+D Q N TLVQVEI+SGRPHQIRIHLSFIGHPL+GDPLY  GG
Sbjct: 246  VASPSGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYDVGG 305

Query: 323  HPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKE-VIEITAPLPS 147
             P CFD+E  D++ A DGGY+RP  PVPGDCGYYLHAH+L+L HPT  E VI+ITAPLPS
Sbjct: 306  QPMCFDSEHEDESFAEDGGYERPAKPVPGDCGYYLHAHQLVLSHPTKNEQVIKITAPLPS 365

Query: 146  ILQTREEAIQI 114
            IL+T+ E  ++
Sbjct: 366  ILRTQAETEEL 376


>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score =  494 bits (1271), Expect = e-137
 Identities = 242/370 (65%), Positives = 288/370 (77%)
 Frame = -1

Query: 1214 GAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIVT 1035
            G PWP+LN+GL+Y D V P+D   +LI+FYSTK+K+SAP QGWLQRI++ QIT+D  +VT
Sbjct: 8    GVPWPELNDGLSYNDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITVDAKVVT 67

Query: 1034 DSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTVL 855
            D +T+LRAGS+L+Y RLPWKEPDAP            +ALNKPSGLQVLPGGLFQQRTVL
Sbjct: 68   DPNTLLRAGSKLVYHRLPWKEPDAPHTIQVLYEDDDIIALNKPSGLQVLPGGLFQQRTVL 127

Query: 854  TQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFAD 675
            TQLQW    + + ++        ++ HPVPVHRLGRGTSGILLCAKTK+A+V LA+YFAD
Sbjct: 128  TQLQWETNNKCTFEA-------HQKPHPVPVHRLGRGTSGILLCAKTKLARVHLASYFAD 180

Query: 674  GTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVAS 495
            GTS +G K+  N ELG   KI+KIYRAL +GI+D D+V I+QPIGM +Y GVAKGLYVAS
Sbjct: 181  GTSRIGGKRDTNQELG---KIAKIYRALVSGIIDNDKVTIDQPIGMVKYPGVAKGLYVAS 237

Query: 494  SSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHPN 315
             SGKPA S V++LE++ + N TLVQV+IQSGRPHQIRIHLSFIGHPL+GDPLY  GG P 
Sbjct: 238  QSGKPALSVVDILERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLIGDPLYAVGGQPK 297

Query: 314  CFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQT 135
            C D +  DD+ A DGGY RP  PVPGDCGYYLHAH L+L HP T E+IEI APLPSILQT
Sbjct: 298  CLDYDFLDDSFAEDGGYPRPPKPVPGDCGYYLHAHELLLTHPITNEIIEIIAPLPSILQT 357

Query: 134  REEAIQIKSA 105
             EEA +I  A
Sbjct: 358  HEEAKEIAIA 367


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score =  493 bits (1270), Expect = e-137
 Identities = 250/365 (68%), Positives = 283/365 (77%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG  WP+LN+GL Y+D V  +D++S+LI FYS K+KNSAP QGWLQRIRNGQIT++G +V
Sbjct: 14   FGFSWPELNDGLFYSDVVRTSDSESTLIQFYSRKYKNSAPLQGWLQRIRNGQITVNGRVV 73

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
             D DTIL  GSEL+Y RLPWKEP AP            +AL+KPS LQVLPGGLFQQRTV
Sbjct: 74   RDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPSELQVLPGGLFQQRTV 133

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            LTQLQWRA KQSS       +L   E +PVPVHRLGRGTSGILLCAKTK AK +LAAYFA
Sbjct: 134  LTQLQWRATKQSS-------SLVCCEPNPVPVHRLGRGTSGILLCAKTKFAKTQLAAYFA 186

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            DGTS VG   K+NLEL   RKI KIYRAL TGI+ +D+V++ QPIG  +Y GVAKGLYVA
Sbjct: 187  DGTSYVGGNSKNNLELNARRKILKIYRALVTGIVCEDKVIVEQPIGTVQYPGVAKGLYVA 246

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
            S SGKPA SKV VLE+D + N TLV+VEIQSGRPHQIRIHLSFIGHPL+GDPLYV GG P
Sbjct: 247  SPSGKPALSKVEVLERDVEKNCTLVKVEIQSGRPHQIRIHLSFIGHPLLGDPLYVVGGRP 306

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
             CFD E  D + A DGG+ RP  PVPGDCGY LHAH + L HPTT EVIEITAPLP +L 
Sbjct: 307  RCFDPEFVDGSFAQDGGFPRPAKPVPGDCGYTLHAHHVSLSHPTTNEVIEITAPLPPVLW 366

Query: 137  TREEA 123
            TR+EA
Sbjct: 367  TRQEA 371


>ref|XP_007143685.1| hypothetical protein PHAVU_007G093000g [Phaseolus vulgaris]
            gi|561016875|gb|ESW15679.1| hypothetical protein
            PHAVU_007G093000g [Phaseolus vulgaris]
          Length = 365

 Score =  491 bits (1263), Expect = e-136
 Identities = 242/368 (65%), Positives = 285/368 (77%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG PWP+ N+GL+Y D V  +D+  +LI+FY TK+K+SAP QGWLQRI++GQIT DG +V
Sbjct: 7    FGIPWPECNDGLSYDDVVRSSDSGLTLIEFYFTKYKSSAPLQGWLQRIKSGQITFDGRVV 66

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
            TDS T+LR GS+L+Y RLPWKEPDAP            +ALNKPSGLQVLPGGLFQQRTV
Sbjct: 67   TDSSTVLRVGSKLVYHRLPWKEPDAPHMIEVLYEDDEMIALNKPSGLQVLPGGLFQQRTV 126

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            LTQLQW A                ++ HPVPVHRLGRGTSGILLCAKTK+A+ RLA+YFA
Sbjct: 127  LTQLQWEANLH-------------KKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFA 173

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            DGTS +G K+  N E+G   KI+KIYR LA+GI++ DEV INQPIG+ +Y GVAKGLYVA
Sbjct: 174  DGTSHIGGKRDTNGEIG---KIAKIYRGLASGIVENDEVTINQPIGVVKYPGVAKGLYVA 230

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
            S SGKPA S V +LE++ Q N TLVQV+IQSGRPHQIRIHLSFIGHPL+GDPLY  GG P
Sbjct: 231  SQSGKPALSVVGILERNVQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGDGGQP 290

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
             C D +S D++ A DGGYQRP  PVPGDCGY LHAH+L+L HP T E+IEITAPLPS+LQ
Sbjct: 291  KCLDCDSIDESFAEDGGYQRPTKPVPGDCGYNLHAHKLVLSHPLTNELIEITAPLPSVLQ 350

Query: 137  TREEAIQI 114
            T EEA +I
Sbjct: 351  TPEEAKEI 358


>ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like [Glycine max]
          Length = 371

 Score =  489 bits (1259), Expect = e-135
 Identities = 240/368 (65%), Positives = 287/368 (77%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG PWP+ N+GL+Y D V  +D  ++LI+FYSTK+K+SAP QGWLQRI++GQIT+DG +V
Sbjct: 7    FGIPWPECNDGLSYDDVVRASDAGATLIEFYSTKYKSSAPLQGWLQRIKSGQITVDGGVV 66

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
            TDS+T+LR GS+LIY RLPWKEPDAP            +ALNKPSGLQVLPGGL+QQRT+
Sbjct: 67   TDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLYQQRTI 126

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            LTQLQW A  Q + +         +  HPVPVHRLGRGTSGILLCAKTK+A+ RLA++FA
Sbjct: 127  LTQLQWEANNQGTCEM-------HKRLHPVPVHRLGRGTSGILLCAKTKLARARLASHFA 179

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            DGTS VG K+    ELG   KI+K+YRAL +GI++ D+V INQPIG+ +Y GVAKGLYVA
Sbjct: 180  DGTSHVGGKRDTKQELG---KIAKMYRALVSGIVENDKVTINQPIGIVKYPGVAKGLYVA 236

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
            S SGKPA S V++LE + Q N TLVQV+IQSGRPHQIRIHLSFIGHPL+GDPLY  GG P
Sbjct: 237  SESGKPALSVVDILETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGVGGQP 296

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
             C D +  D++ A DGGYQRP  PVPGDCGYYLHAH+L+L HPTT E+IEI APLPS L 
Sbjct: 297  KCLDCDFVDESFAEDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNELIEIIAPLPSALH 356

Query: 137  TREEAIQI 114
            T EEA +I
Sbjct: 357  TAEEAKEI 364


>ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X3 [Solanum
            tuberosum]
          Length = 374

 Score =  487 bits (1254), Expect = e-135
 Identities = 247/364 (67%), Positives = 277/364 (76%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG  WP+LNEGLTY D V P D    LI+FY  K+KNSAP QGWLQRI+N QITIDG +V
Sbjct: 14   FGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQGWLQRIQNKQITIDGKVV 73

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
               DT LRAG+EL+Y RLPW+EPDAP            + +NKPSGLQVLPGGL+QQRTV
Sbjct: 74   ILPDTELRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSGLQVLPGGLYQQRTV 133

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            LTQLQW A K ++  SG   T      HPVPVHRLGRGTSGILLCAKTK+ K RLAAYFA
Sbjct: 134  LTQLQWHACKPTTTSSGCQKT------HPVPVHRLGRGTSGILLCAKTKLCKSRLAAYFA 187

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            +GTSVV DK   N E    RKI KIYRAL +G++D DEVVI QPIG  +Y GVAKGLYVA
Sbjct: 188  EGTSVVEDKCT-NSECNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYPGVAKGLYVA 246

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
            S SGKPA S V VLE+D + N TLVQVEIQSGRPHQIRIHLSFIG+PL+GDPLYVSGG P
Sbjct: 247  SPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPLYVSGGQP 306

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
             CF  E  D++   DGGYQRP NPVPGDCGY LHAH++ L HP T E+I+ITAPLP+ILQ
Sbjct: 307  KCFHPELMDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITNELIKITAPLPAILQ 366

Query: 137  TREE 126
            TREE
Sbjct: 367  TREE 370


>ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [Solanum lycopersicum]
          Length = 402

 Score =  483 bits (1242), Expect = e-134
 Identities = 243/364 (66%), Positives = 277/364 (76%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG PWP  NEGL+Y D V P D   +LI+FY  K+KNSAP QGWLQRI+N QITIDG +V
Sbjct: 37   FGVPWPQRNEGLSYHDIVRPTDAGLTLIEFYFRKYKNSAPLQGWLQRIQNKQITIDGKVV 96

Query: 1037 TDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTV 858
               DT LRAG+EL+Y RLPW+EPDAP            + +NKPSGLQVLPGGL+QQRTV
Sbjct: 97   ILPDTELRAGAELVYHRLPWREPDAPYLLEVLFEDDYLIVVNKPSGLQVLPGGLYQQRTV 156

Query: 857  LTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFA 678
            LTQLQW A K ++  SG   T      HPVPVHRLGRGTSGILLCAKTK+ K RLAAYFA
Sbjct: 157  LTQLQWHACKLTTTSSGCQKT------HPVPVHRLGRGTSGILLCAKTKLCKSRLAAYFA 210

Query: 677  DGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVA 498
            +GTSVV ++K  N E    RKI KIYRAL +G++D DE VI QPIG  +Y GVAKGLYVA
Sbjct: 211  EGTSVV-EEKCTNSECNTMRKICKIYRALVSGVMDMDEAVIKQPIGTIKYPGVAKGLYVA 269

Query: 497  SSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
            S SGKPA S V VLE+D + N TLVQVEIQSGRPHQIRIHLSFIG+PL+GDPLYVSGG P
Sbjct: 270  SPSGKPALSSVRVLERDSESNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPLYVSGGQP 329

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
             CF  E  D++   DGGYQRP NPVPGDCGY LHAH++ L HP T E+I+ITAPLP+ILQ
Sbjct: 330  KCFHPELLDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITNELIKITAPLPAILQ 389

Query: 137  TREE 126
            TR+E
Sbjct: 390  TRDE 393


>ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Solanum
            tuberosum] gi|565360441|ref|XP_006346976.1| PREDICTED:
            RNA pseudouridine synthase 5-like isoform X2 [Solanum
            tuberosum]
          Length = 379

 Score =  481 bits (1238), Expect = e-133
 Identities = 247/369 (66%), Positives = 277/369 (75%), Gaps = 5/369 (1%)
 Frame = -1

Query: 1217 FGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIV 1038
            FG  WP+LNEGLTY D V P D    LI+FY  K+KNSAP QGWLQRI+N QITIDG +V
Sbjct: 14   FGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQGWLQRIQNKQITIDGKVV 73

Query: 1037 TDSDTIL-----RAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLF 873
               DT L     RAG+EL+Y RLPW+EPDAP            + +NKPSGLQVLPGGL+
Sbjct: 74   ILPDTELSFWMCRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSGLQVLPGGLY 133

Query: 872  QQRTVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRL 693
            QQRTVLTQLQW A K ++  SG   T      HPVPVHRLGRGTSGILLCAKTK+ K RL
Sbjct: 134  QQRTVLTQLQWHACKPTTTSSGCQKT------HPVPVHRLGRGTSGILLCAKTKLCKSRL 187

Query: 692  AAYFADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAK 513
            AAYFA+GTSVV DK   N E    RKI KIYRAL +G++D DEVVI QPIG  +Y GVAK
Sbjct: 188  AAYFAEGTSVVEDKCT-NSECNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYPGVAK 246

Query: 512  GLYVASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYV 333
            GLYVAS SGKPA S V VLE+D + N TLVQVEIQSGRPHQIRIHLSFIG+PL+GDPLYV
Sbjct: 247  GLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPLYV 306

Query: 332  SGGHPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPL 153
            SGG P CF  E  D++   DGGYQRP NPVPGDCGY LHAH++ L HP T E+I+ITAPL
Sbjct: 307  SGGQPKCFHPELMDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITNELIKITAPL 366

Query: 152  PSILQTREE 126
            P+ILQTREE
Sbjct: 367  PAILQTREE 375


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
            gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase
            [Medicago truncatula] gi|355481000|gb|AES62203.1| RNA
            pseudourine synthase [Medicago truncatula]
            gi|355504493|gb|AES85696.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 371

 Score =  481 bits (1238), Expect = e-133
 Identities = 238/366 (65%), Positives = 284/366 (77%), Gaps = 1/366 (0%)
 Frame = -1

Query: 1214 GAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGIIVT 1035
            G PWP+ N+GL+Y D V P+D   +LI+FYSTK+K+SAP QGWLQRI++ QIT+D  +VT
Sbjct: 8    GIPWPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVT 67

Query: 1034 DSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQRTVL 855
            D +TILR GS+L+Y R+PWKEPDAP            +ALNKPSGLQVLPGGLFQQRTVL
Sbjct: 68   DPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVL 127

Query: 854  TQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAYFAD 675
            TQLQW    +S++++        ++ HPVPVHRLGRGTSGILLCAKTK+A+ RLA+YFAD
Sbjct: 128  TQLQWETNNKSTIEA-------HQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFAD 180

Query: 674  GTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLYVAS 495
            GTS +  K   N ELG   KI+KIYRAL +GI++ D+V INQPIGM +Y GVAKGLYVAS
Sbjct: 181  GTSRIEGKGHTNQELG---KIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVAS 237

Query: 494  SSGKPASSKVNVLEKDEQGNHTLVQ-VEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGGHP 318
             SGKPA S V+VLE++ + N TLVQ V+IQSGRPHQIRIHLSFIGHPL+GDPLY  GG P
Sbjct: 238  QSGKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQP 297

Query: 317  NCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSILQ 138
             C D +  D++ A DGGY RP  PVPGDCGY+LHAHRL L HP T E+IE+ APLPSILQ
Sbjct: 298  KCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSILQ 357

Query: 137  TREEAI 120
            T EEAI
Sbjct: 358  THEEAI 363


>gb|EYU39826.1| hypothetical protein MIMGU_mgv1a008941mg [Mimulus guttatus]
          Length = 357

 Score =  470 bits (1209), Expect = e-130
 Identities = 234/368 (63%), Positives = 282/368 (76%)
 Frame = -1

Query: 1223 VTFGAPWPDLNEGLTYTDFVEPNDTDSSLIDFYSTKHKNSAPYQGWLQRIRNGQITIDGI 1044
            V+FG PWP+ N+G+ Y D + P+D  ++LI+FYS K+++SAP  GWLQRI N QIT++G 
Sbjct: 2    VSFGDPWPEFNDGIYYRDLLRPSDDGATLIEFYSRKYQSSAPLHGWLQRIHNKQITVNGG 61

Query: 1043 IVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQR 864
            +VTD +TILR G+EL+Y RLPWKEPDAP            +ALNKPSGLQVLPGGLFQQR
Sbjct: 62   VVTDPNTILRGGAELVYHRLPWKEPDAPHLVEILYEDDDVIALNKPSGLQVLPGGLFQQR 121

Query: 863  TVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAAY 684
            TVLTQLQ  A              G +E HPVPVHRLGRGTSGILLCAKTK+AK RLAA+
Sbjct: 122  TVLTQLQRHAG-------------GCQEPHPVPVHRLGRGTSGILLCAKTKLAKSRLAAF 168

Query: 683  FADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGLY 504
            FADGTSVVG  ++++ +   TR I+K+YRALA+GI+ +DEVVI+QPIG+ +Y GVA GLY
Sbjct: 169  FADGTSVVGVCRENDQQQKSTRNITKLYRALASGIIIEDEVVIDQPIGLVKYPGVANGLY 228

Query: 503  VASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSGG 324
            VAS SGKPA SKV VLE++   N TLVQVEIQSGRPHQIRIHLSFIGHPL+GDPLY +GG
Sbjct: 229  VASPSGKPAWSKVVVLERNMLNNSTLVQVEIQSGRPHQIRIHLSFIGHPLIGDPLYSTGG 288

Query: 323  HPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPLPSI 144
             P C D E  D + A DGGY+RP  PVPGDCGY+LHAHR++  HP + E+IEITAPLPSI
Sbjct: 289  QPKCSDHELVDQSFAEDGGYERPEKPVPGDCGYHLHAHRVLFTHPVSNEIIEITAPLPSI 348

Query: 143  LQTREEAI 120
            L+   + I
Sbjct: 349  LRRTVDVI 356


>ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutrema salsugineum]
            gi|557104939|gb|ESQ45273.1| hypothetical protein
            EUTSA_v10010446mg [Eutrema salsugineum]
          Length = 382

 Score =  459 bits (1182), Expect = e-127
 Identities = 237/376 (63%), Positives = 281/376 (74%), Gaps = 4/376 (1%)
 Frame = -1

Query: 1238 KTPTFVTFGAPWPDLNEGLTYTDFVEPNDTDSSLI---DFYSTKHKNSAPYQGWLQRIRN 1068
            K P+    G PWP+LN+GL Y D V    + S L    DFYSTK+K+SAP  GW+QRI+N
Sbjct: 4    KPPSLKRIGLPWPELNDGLAYKDVVSSFSSSSELTTVSDFYSTKYKSSAPLLGWIQRIQN 63

Query: 1067 GQITIDGIIVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVL 888
            GQI IDG +V D +T+LR GS+L+Y RLPWKEPD P            +ALNKPSGLQVL
Sbjct: 64   GQIQIDGEVVKDHNTLLRRGSKLVYHRLPWKEPDTPYSLEVLYEDNDLIALNKPSGLQVL 123

Query: 887  PGGLFQQRTVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKV 708
            PGGLFQQRT+LTQLQW   K+ S       + G RESHPVPVHRLGRGTSGILLCAKTK+
Sbjct: 124  PGGLFQQRTLLTQLQWCFSKKDS-------STGARESHPVPVHRLGRGTSGILLCAKTKL 176

Query: 707  AKVRLAAYFADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRY 528
            AK +LA+YFA+GTS+VG    D  E G  RKISKIYRALA GI+++DEVVI QPIG+ RY
Sbjct: 177  AKTKLASYFAEGTSLVGFGNLDQ-ECGTGRKISKIYRALADGIVEEDEVVIKQPIGVVRY 235

Query: 527  AGVAKGLYVASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVG 348
             GVAKGLYVASS GKPA SKV VLE++ Q N TLV+VEIQSGRPHQIRIHL+++GHPLVG
Sbjct: 236  PGVAKGLYVASSEGKPALSKVAVLERNMQRNCTLVKVEIQSGRPHQIRIHLAYMGHPLVG 295

Query: 347  DPLYVSGGHPNCFDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYH-PTTKEVI 171
            DPLYV+GG P CFD ++ D   A DGGY+RP   VPGDCGY+LHAH++ L +     +V+
Sbjct: 296  DPLYVAGGKPKCFDPDAVDSAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNLNKVV 355

Query: 170  EITAPLPSILQTREEA 123
            ++ APLP ILQT  EA
Sbjct: 356  KVVAPLPPILQTSSEA 371


>ref|XP_006651272.1| PREDICTED: RNA pseudouridine synthase 5-like [Oryza brachyantha]
          Length = 396

 Score =  456 bits (1173), Expect = e-126
 Identities = 234/369 (63%), Positives = 276/369 (74%), Gaps = 4/369 (1%)
 Frame = -1

Query: 1220 TFGAPWPDLNEGLTYTDFVEPNDTDSS--LIDFYSTKHKNSAPYQGWLQRIRNGQITIDG 1047
            +FG PWP+ NEG++YTD     D  ++  LI+FYST +K+SAP  GW++RIRNGQIT+DG
Sbjct: 22   SFGRPWPEFNEGISYTDTFRCADAGATMTLIEFYSTTYKSSAPLPGWIKRIRNGQITVDG 81

Query: 1046 IIVTDSDTILRAGSELIYRRLPWKEPDAPXXXXXXXXXXXXVALNKPSGLQVLPGGLFQQ 867
             +VTD D  LR GS+LIY RLPW+EP AP            +ALNKPSGLQVLP GLFQQ
Sbjct: 82   EVVTDPDMTLRQGSKLIYHRLPWQEPFAPHLLGVLYEDDDMIALNKPSGLQVLPKGLFQQ 141

Query: 866  RTVLTQLQWRARKQSSLQSGFSGTLGDRESHPVPVHRLGRGTSGILLCAKTKVAKVRLAA 687
            RTVL QLQ +  K   + S F     D +SHPVPVHRLGRGTSG+LLCAKTK+AK RLAA
Sbjct: 142  RTVLAQLQMKDWK---IPSSFCSKQKDVQSHPVPVHRLGRGTSGLLLCAKTKLAKARLAA 198

Query: 686  YFADGTSVVGDKKKDNLELGMTRKISKIYRALATGILDKDEVVINQPIGMTRYAGVAKGL 507
            YFA+GT+  G K +D  ++   RKISK YRAL TGIL+ DEV+I QPIG+  Y GVA+GL
Sbjct: 199  YFAEGTTNAG-KSRDETDMCKVRKISKFYRALVTGILENDEVMITQPIGLVHYPGVAEGL 257

Query: 506  YVASSSGKPASSKVNVLEKDEQGNHTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYVSG 327
            Y A SSGKPA SKV+VLE+ E  N TLVQVEI SGRPHQIRIHL+ IGHPLV DPLY  G
Sbjct: 258  YAACSSGKPAMSKVSVLERLEHRNQTLVQVEIHSGRPHQIRIHLACIGHPLVDDPLYGIG 317

Query: 326  GHPNC--FDAESRDDNHAGDGGYQRPMNPVPGDCGYYLHAHRLILYHPTTKEVIEITAPL 153
            G P     ++ S DD+ A DGGY+RP+ PVPGDCGY+LHAH L+L HPTT E+I+ITAPL
Sbjct: 318  GQPKFDELESSSTDDSFAYDGGYERPLQPVPGDCGYHLHAHWLVLCHPTTNEMIKITAPL 377

Query: 152  PSILQTREE 126
            P ILQTREE
Sbjct: 378  PQILQTREE 386