BLASTX nr result
ID: Akebia24_contig00000762
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00000762
(5227 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subun... 490 0.0
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatu... 491 0.0
ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucife... 553 e-154
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]... 551 e-153
gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma af... 547 e-152
ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis ... 544 e-151
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa... 538 e-149
ref|YP_008993466.1| RNA polymerase alpha subunit (chloroplast) [... 537 e-149
ref|YP_008993810.1| RNA polymerase alpha subunit (chloroplast) [... 537 e-149
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops... 537 e-149
gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus] 536 e-149
gb|ADD31228.1| RNA polymerase alpha subunit protein [Gunnera man... 536 e-149
ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac... 536 e-149
ref|YP_008993724.1| RNA polymerase alpha subunit (chloroplast) [... 535 e-149
ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [... 534 e-148
ref|YP_008993208.1| RNA polymerase alpha subunit (chloroplast) [... 533 e-148
ref|YP_740597.1| RNA polymerase alpha subunit [Platanus occident... 533 e-148
ref|YP_008993380.1| RNA polymerase alpha subunit (chloroplast) [... 532 e-148
ref|YP_008993638.1| RNA polymerase alpha subunit (chloroplast) [... 532 e-148
gb|AEX58487.1| RNA polymerase alpha subunit (chloroplast) [Theob... 532 e-148
>ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subunit alpha-like [Cucumis
sativus]
Length = 466
Score = 490 bits (1261), Expect(2) = 0.0
Identities = 243/297 (81%), Positives = 267/297 (89%), Gaps = 2/297 (0%)
Frame = +1
Query: 4342 REAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 4521
R+ + VSTRTL+WKCVESRAD+KRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGTCI
Sbjct: 136 RQKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCI 195
Query: 4522 TRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQDII 4701
TRAK EKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGTRDA ICV+GPG VTAQDII
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDII 255
Query: 4702 SPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVRNA 4881
P SVEIVD TQ IA+L EPI+LCI L+IERNRGY ++TPNN Q+ SYP+DA+FMPVRN
Sbjct: 256 LPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNV 315
Query: 4882 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--QDTHLE 5055
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE ++ HL+
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLK 375
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
+N+ +VTLP F FH++LAKLRK KKEIALK IFIDQ ELP + YNCLKR NIHTL D
Sbjct: 376 NNKKKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFD 432
Score = 211 bits (537), Expect(2) = 0.0
Identities = 107/130 (82%), Positives = 112/130 (86%)
Frame = +2
Query: 3854 MAKPISRIGSRRNGHIGSRKNGRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAXXXX 4033
MAKPI RIGSRRNG I SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSA
Sbjct: 1 MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
Query: 4034 XXXXXXXXPFAAQTAAGNAIRTVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIVLSFVR 4213
PFAAQTAAGNAIR VVDQGMQRAEV IKGPGLGRDAALRAIRRSGI+LSF+R
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
Query: 4214 DITPMPHNGC 4243
D+TPMPHNGC
Sbjct: 121 DVTPMPHNGC 130
>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
gi|355507111|gb|AES88253.1| 30S ribosomal protein S11
[Medicago truncatula]
Length = 466
Score = 491 bits (1265), Expect(2) = 0.0
Identities = 247/297 (83%), Positives = 267/297 (89%), Gaps = 2/297 (0%)
Frame = +1
Query: 4342 REAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 4521
R+ V VS RTLQWKCVESR D+KRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195
Query: 4522 TRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQDII 4701
TRAK EKIPHEYSTIVGI+ES+HEILMNLKEIVL+SNLYGTRDA IC +GPGYVTAQDII
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255
Query: 4702 SPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVRNA 4881
P SVEIVD TQ IA+LTEPI+LCI LQIER RGYR+KT NN Q+GSY IDAVFMPVRNA
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315
Query: 4882 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLEDN 5061
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE++ + E+N
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 375
Query: 5062 QNRVTLPFFPFHDRLA--KLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
Q++VTLP F FHDRL KLRKNKKEIALK IFIDQLEL + YNCLK+SNIHTLL+
Sbjct: 376 QHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLE 432
Score = 196 bits (497), Expect(2) = 0.0
Identities = 99/130 (76%), Positives = 109/130 (83%)
Frame = +2
Query: 3854 MAKPISRIGSRRNGHIGSRKNGRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAXXXX 4033
MAK I +IGSR+NG IGSRK+ R+IPKGVI+VQASFNNTIVTVTDVRGRV+SWSSA
Sbjct: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
Query: 4034 XXXXXXXXPFAAQTAAGNAIRTVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGIVLSFVR 4213
PFAAQTAA NAIRTVVDQGMQRA V IKGPGLGRDAALRAI RSGI+L F+R
Sbjct: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
Query: 4214 DITPMPHNGC 4243
D+TP+PHNGC
Sbjct: 121 DVTPIPHNGC 130
>ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucifera]
gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
[Nelumbo nucifera] gi|290489668|gb|ADD31218.1| RNA
polymerase alpha subunit protein [Nelumbo nucifera]
gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
Length = 339
Score = 553 bits (1424), Expect = e-154
Identities = 275/299 (91%), Positives = 285/299 (95%), Gaps = 2/299 (0%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE +AVSTRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA+ICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVDTTQ IASLTEPIDLCIGLQIERNRGYRMKTPNN+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL A+E+D LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLDAQEEDIQLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNK--KEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQN+VTLPFF FHDRL KLRKNK KEIALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 299
>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
[Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
polymerase alpha subunit (chloroplast) [Nelumbo lutea]
Length = 339
Score = 551 bits (1419), Expect = e-153
Identities = 274/299 (91%), Positives = 285/299 (95%), Gaps = 2/299 (0%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE +AVSTRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA+ICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVDTTQ IASLTEPIDLCIGLQIERNRGYRMKTPNN+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFL A+E+D LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLDAQEEDIQLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNK--KEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQN+VTLPFF FHDRL KLRKNK KEIALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 299
>gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma aff. cuneifolia Moore
333]
Length = 337
Score = 547 bits (1409), Expect = e-152
Identities = 272/297 (91%), Positives = 282/297 (94%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESRAD+KRLYYGRFI+SPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRADSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK E IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVRGPGYVTAQD
Sbjct: 61 CITRAKSETIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISPSSVEIVDTTQ IASLTEPI+LCIGLQIERN GYRMKTP N+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPSSVEIVDTTQHIASLTEPINLCIGLQIERNHGYRMKTPKNSQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+D +E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEDIIIE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQNR T+PFF FHDRLAKLRKNKKEIALK IFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNQNRFTVPFFTFHDRLAKLRKNKKEIALKFIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis saniculifolia]
gi|226933914|gb|ACO92047.1| RNA polymerase alpha subunit
[Megaleranthis saniculifolia]
Length = 328
Score = 544 bits (1402), Expect = e-151
Identities = 273/297 (91%), Positives = 280/297 (94%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
MLRE VAVSTRTLQWKCVESRAD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLREEVAVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVD TQ IASLTEPIDLCI LQIERNRGYRMKTPNN Q SYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWT+GSLTPKEAL+EASRNLIDLFIPFLHAEEQDT LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQ+RVTLPFF FHD L K+RKNKKEI LKCIFIDQ ELPS+TYNCLKR NIHTLLD
Sbjct: 241 DNQSRVTLPFFTFHDGLDKVRKNKKEIELKCIFIDQSELPSRTYNCLKRFNIHTLLD 297
>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
Length = 337
Score = 538 bits (1385), Expect = e-149
Identities = 266/297 (89%), Positives = 280/297 (94%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE V VSTRTL+WKCVESRAD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGI+ESVHEILMNLKE+VLRSNLYGTR+A ICV GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRNASICVSGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVD TQ IASLTEPIDLCIGLQIE+NRGYR+KTPNN Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++ HLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQ++VTLP F FHDRLAKLRKNKKEIALK IFIDQ ELP + Y CLKRSNIHTLLD
Sbjct: 241 DNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYTCLKRSNIHTLLD 297
>ref|YP_008993466.1| RNA polymerase alpha subunit (chloroplast) [Magnolia kobus]
Length = 337
Score = 537 bits (1384), Expect = e-149
Identities = 267/297 (89%), Positives = 278/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQNR T+P FPFHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNQNRFTVPLFPFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_008993810.1| RNA polymerase alpha subunit (chloroplast) [Magnolia sinica]
Length = 337
Score = 537 bits (1383), Expect = e-149
Identities = 267/297 (89%), Positives = 277/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD HLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DN NR T+PFF FHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
Length = 337
Score = 537 bits (1383), Expect = e-149
Identities = 268/297 (90%), Positives = 278/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE V VSTRTLQWKCVESRAD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGT DA ICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVD TQ IASLTEPIDLCIGLQIERNRGYR+KT NN Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++ HLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQ++ T P F FHDRLAKLRKNKKEIALK IFIDQLELP + YNCLKRSNIHTL D
Sbjct: 241 DNQHKATFPLFTFHDRLAKLRKNKKEIALKYIFIDQLELPPRIYNCLKRSNIHTLSD 297
>gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]
Length = 339
Score = 536 bits (1382), Expect = e-149
Identities = 268/298 (89%), Positives = 278/298 (93%), Gaps = 1/298 (0%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
MLR+ VAVS RTLQWKCVESRAD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLRDEVAVSARTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVDTTQ IASLTEP+D CIGLQIE NRGYRMKTPNN Q GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNE QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEQD +L+
Sbjct: 181 NANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLK 240
Query: 5056 DNQ-NRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQ N VTLPFF FHD KL+KNKKEI LKCIFIDQ ELPS+TYNCLKR+NIHTLLD
Sbjct: 241 DNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSRTYNCLKRANIHTLLD 298
>gb|ADD31228.1| RNA polymerase alpha subunit protein [Gunnera manicata]
Length = 330
Score = 536 bits (1382), Expect = e-149
Identities = 264/297 (88%), Positives = 279/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE + VSTRTLQWKCVESR D+KRLYYGRFI+SPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGI+ESVHEILMNLKEI+L+SN+YGTRDA ICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIILKSNIYGTRDASICVRGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVD TQ IASLTEPIDLCI LQIE+NRGYR+KTPN Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIQLQIEKNRGYRIKTPNTYQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNG EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++ HLE
Sbjct: 181 NANHSIHSYGNGKEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQ +VTLPFF FHDRLAKLRKNKKEIALK IFIDQ ELPS+TYNCLK SNIHTLLD
Sbjct: 241 DNQYKVTLPFFTFHDRLAKLRKNKKEIALKSIFIDQSELPSRTYNCLKSSNIHTLLD 297
>ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus]
gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit
[Ranunculus macranthus]
Length = 346
Score = 536 bits (1382), Expect = e-149
Identities = 268/298 (89%), Positives = 278/298 (93%), Gaps = 1/298 (0%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
MLR+ VAVS RTLQWKCVESRAD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLRDEVAVSARTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVEIVDTTQ IASLTEP+D CIGLQIE NRGYRMKTPNN Q GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNE QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEQD +L+
Sbjct: 181 NANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLK 240
Query: 5056 DNQ-NRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQ N VTLPFF FHD KL+KNKKEI LKCIFIDQ ELPS+TYNCLKR+NIHTLLD
Sbjct: 241 DNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSRTYNCLKRANIHTLLD 298
>ref|YP_008993724.1| RNA polymerase alpha subunit (chloroplast) [Magnolia salicifolia]
Length = 337
Score = 535 bits (1378), Expect = e-149
Identities = 266/297 (89%), Positives = 277/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DN NR T+P FPFHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNPNRFTVPLFPFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [Magnolia officinalis]
gi|452848803|ref|YP_007474484.1| RNA polymerase alpha
subunit (chloroplast) [Magnolia officinalis subsp.
biloba] gi|619275767|ref|YP_009026913.1| RNA polymerase
alpha subunit [Magnolia tripetala]
gi|372862453|gb|AEX98534.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis]
gi|372862536|gb|AEX98616.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862621|gb|AEX98700.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862706|gb|AEX98784.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|608608435|gb|AHW51989.1| RNA polymerase alpha subunit
[Magnolia tripetala]
Length = 337
Score = 534 bits (1376), Expect = e-148
Identities = 266/297 (89%), Positives = 277/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DN NR T+PFF FHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_008993208.1| RNA polymerase alpha subunit (chloroplast) [Magnolia cathcartii]
Length = 337
Score = 533 bits (1373), Expect = e-148
Identities = 265/297 (89%), Positives = 277/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA+ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDAFICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+ SYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDESYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDRNLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DN NR T+PFF FHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_740597.1| RNA polymerase alpha subunit [Platanus occidentalis]
gi|122166006|sp|Q09G14.1|RPOA_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|114054417|gb|ABI49811.1| RNA polymerase alpha subunit
[Platanus occidentalis]
Length = 337
Score = 533 bits (1373), Expect = e-148
Identities = 264/297 (88%), Positives = 279/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE V VSTRTLQWKCVESRAD+KRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTR+A IC+RGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
IISP SVE VD TQ IA+LTEPID CI L+IERNRGYRMKTPNN+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA+E++ LE
Sbjct: 181 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DNQN VTLPFF FHDRLAK+RKN+KEIALK IFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNQNGVTLPFFTFHDRLAKIRKNEKEIALKYIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_008993380.1| RNA polymerase alpha subunit (chloroplast) [Magnolia pyramidata]
Length = 337
Score = 532 bits (1371), Expect = e-148
Identities = 265/297 (89%), Positives = 276/297 (92%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+K LYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKHLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DN NR T+PFF FHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>ref|YP_008993638.1| RNA polymerase alpha subunit (chloroplast) [Magnolia odora]
Length = 337
Score = 532 bits (1370), Expect = e-148
Identities = 265/297 (89%), Positives = 276/297 (92%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE VAVSTRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVDTTQ IASLTEPIDLCI LQIER+RGYRMKTPNN Q+ SYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDESYPIDAVSMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDRNLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
DN NR T+P FPFHDRLA +RKNKK IALKCIFIDQ ELP +TYNCLKRSNIHTLLD
Sbjct: 241 DNPNRFTVPLFPFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLD 297
>gb|AEX58487.1| RNA polymerase alpha subunit (chloroplast) [Theobroma grandiflorum]
Length = 327
Score = 532 bits (1370), Expect = e-148
Identities = 262/297 (88%), Positives = 277/297 (93%)
Frame = +1
Query: 4336 MLREAVAVSTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 4515
M+RE V VSTRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 4516 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVRGPGYVTAQD 4695
CITRAK EKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGTR+A+IC +GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQD 120
Query: 4696 IISPSSVEIVDTTQQIASLTEPIDLCIGLQIERNRGYRMKTPNNTQNGSYPIDAVFMPVR 4875
II P SVEIVD TQ IASLTEPIDLCIGLQIERNRGYR+KTPNN +GSYP+DAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQNIASLTEPIDLCIGLQIERNRGYRIKTPNNFHDGSYPLDAVFMPVR 180
Query: 4876 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDTHLE 5055
NANHSIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++ HLE
Sbjct: 181 NANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 5056 DNQNRVTLPFFPFHDRLAKLRKNKKEIALKCIFIDQLELPSKTYNCLKRSNIHTLLD 5226
+NQ+ VTLPFFPFHDRLAKLRK KKEIALK IFIDQ ELP + YNCLK+SNIHTLLD
Sbjct: 241 NNQHNVTLPFFPFHDRLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKKSNIHTLLD 297