BLASTX nr result

ID: Akebia23_contig00062619 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00062619
         (299 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi...    59   7e-07
ref|XP_004234271.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-06
ref|XP_006348045.1| PREDICTED: pentatricopeptide repeat-containi...    56   5e-06
ref|XP_007152720.1| hypothetical protein PHAVU_004G153700g [Phas...    56   6e-06

>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 3   VPGCSMLEINGVVHEFSVRGSSEATMKEIEWILSGVSDEMKI 128
           +PGCSM+EING V EFS  GSSE  MKE+  +L+G+S+EMKI
Sbjct: 499 IPGCSMIEINGEVQEFSAGGSSELPMKELVLVLNGLSNEMKI 540


>ref|XP_004234271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Solanum lycopersicum]
          Length = 551

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 3   VPGCSMLEINGVVHEFSVRGSSEATMKEIEWILSGVSDEM 122
           VPGCS +E+NGVV EFSVRGSS+  M EI+++LS +SDE+
Sbjct: 501 VPGCSAIEVNGVVCEFSVRGSSQVLMTEIKFVLSSLSDEI 540


>ref|XP_006348045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Solanum tuberosum]
          Length = 539

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +3

Query: 3   VPGCSMLEINGVVHEFSVRGSSEATMKEIEWILSGVSDEM 122
           VPGCSM+E+NGVV EFSVRGS    M EI+++LS +SDE+
Sbjct: 489 VPGCSMIEVNGVVCEFSVRGSPLVLMTEIKFVLSSLSDEI 528


>ref|XP_007152720.1| hypothetical protein PHAVU_004G153700g [Phaseolus vulgaris]
           gi|561026029|gb|ESW24714.1| hypothetical protein
           PHAVU_004G153700g [Phaseolus vulgaris]
          Length = 542

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +3

Query: 3   VPGCSMLEINGVVHEFSVRGSSEATMKEIEWILSGVSDEMKI 128
           +PGCSM+EING V EFS  GSSE  MKE+  +L+ +S+EMKI
Sbjct: 501 IPGCSMIEINGEVQEFSAGGSSELPMKELVLVLNRLSNEMKI 542


Top